BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5929
(286 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3UNW5|TF2L1_MOUSE Transcription factor CP2-like protein 1 OS=Mus musculus GN=Tfcp2l1
PE=1 SV=2
Length = 479
Score = 180 bits (457), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 89/155 (57%), Positives = 112/155 (72%), Gaps = 12/155 (7%)
Query: 16 LTYLNQGQSYELKLK--------QDCGVKCLLMSVIRVSFHDRRLQYTEREQMCVWRAAH 67
LTYLNQGQSYE++L QD K + S+IRV FHDRRLQYTE +Q+ WR +
Sbjct: 66 LTYLNQGQSYEIRLLENRKLGDFQDLNTK-YVKSIIRVVFHDRRLQYTEYQQLEGWRWSR 124
Query: 68 PGHRILEVDLPLSYGIHDVLQDSATVNSVQFNWDPNKETGVYIKVNCISTEFTPKKHGGE 127
PG RIL++D+PLS GI D +N+V+F WDP+K +I+V+CISTEFTP+KHGGE
Sbjct: 125 PGDRILDIDIPLSVGILDPRASPTQLNAVEFLWDPSKRASAFIQVHCISTEFTPRKHGGE 184
Query: 128 KGVPFRIQVDTFVQDTT---HRHLHSASCQVKVFK 159
KGVPFR+Q+DTF Q+ + HLHSASCQ+KVFK
Sbjct: 185 KGVPFRVQIDTFKQNESGDYSEHLHSASCQIKVFK 219
>sp|Q9NZI6|TF2L1_HUMAN Transcription factor CP2-like protein 1 OS=Homo sapiens GN=TFCP2L1
PE=2 SV=1
Length = 479
Score = 179 bits (455), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 89/155 (57%), Positives = 110/155 (70%), Gaps = 12/155 (7%)
Query: 16 LTYLNQGQSYELKLK--------QDCGVKCLLMSVIRVSFHDRRLQYTEREQMCVWRAAH 67
LTYLNQGQSYE++L QD K + S+IRV FHDRRLQYTE +Q+ WR +
Sbjct: 66 LTYLNQGQSYEIRLLENRKLGDFQDLNTK-YVKSIIRVVFHDRRLQYTEHQQLEGWRWSR 124
Query: 68 PGHRILEVDLPLSYGIHDVLQDSATVNSVQFNWDPNKETGVYIKVNCISTEFTPKKHGGE 127
PG RIL++D+PLS GI D +N+V+F WDP K +I+V+CISTEFTP+KHGGE
Sbjct: 125 PGDRILDIDIPLSVGILDPRASPTQLNAVEFLWDPAKRASAFIQVHCISTEFTPRKHGGE 184
Query: 128 KGVPFRIQVDTFVQDTTH---RHLHSASCQVKVFK 159
KGVPFR+Q+DTF Q+ HLHSASCQ+KVFK
Sbjct: 185 KGVPFRVQIDTFKQNENGEYTEHLHSASCQIKVFK 219
>sp|Q9NZI7|UBIP1_HUMAN Upstream-binding protein 1 OS=Homo sapiens GN=UBP1 PE=2 SV=1
Length = 540
Score = 179 bits (453), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 86/154 (55%), Positives = 112/154 (72%), Gaps = 10/154 (6%)
Query: 16 LTYLNQGQSYELKLKQDCGVK-------CLLMSVIRVSFHDRRLQYTEREQMCVWRAAHP 68
LTYLNQGQSYE+++ + + L+ S+IRV FHDRRLQYTE +Q+ W+ P
Sbjct: 83 LTYLNQGQSYEIRMLDNRKMGDMPEINGKLVKSIIRVVFHDRRLQYTEHQQLEGWKWNRP 142
Query: 69 GHRILEVDLPLSYGIHDVLQDSATVNSVQFNWDPNKETGVYIKVNCISTEFTPKKHGGEK 128
G R+L++D+P+S GI D + + +N+V+F WDP K T +I+V+CISTEFTP+KHGGEK
Sbjct: 143 GDRLLDLDIPMSVGIIDTRTNPSQLNAVEFLWDPAKRTSAFIQVHCISTEFTPRKHGGEK 202
Query: 129 GVPFRIQVDTFVQDTTHR---HLHSASCQVKVFK 159
GVPFRIQVDTF Q+ HLHSASCQ+KVFK
Sbjct: 203 GVPFRIQVDTFKQNENGEYTDHLHSASCQIKVFK 236
>sp|Q811S7|UBIP1_MOUSE Upstream-binding protein 1 OS=Mus musculus GN=Ubp1 PE=1 SV=1
Length = 540
Score = 179 bits (453), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 86/154 (55%), Positives = 112/154 (72%), Gaps = 10/154 (6%)
Query: 16 LTYLNQGQSYELKLKQDCGVK-------CLLMSVIRVSFHDRRLQYTEREQMCVWRAAHP 68
LTYLNQGQSYE+++ + + L+ S+IRV FHDRRLQYTE +Q+ W+ P
Sbjct: 83 LTYLNQGQSYEIRMLDNRKMGDMPELSGKLVKSIIRVVFHDRRLQYTEHQQLEGWKWNRP 142
Query: 69 GHRILEVDLPLSYGIHDVLQDSATVNSVQFNWDPNKETGVYIKVNCISTEFTPKKHGGEK 128
G R+L++D+P+S GI D + + +N+V+F WDP K T +I+V+CISTEFTP+KHGGEK
Sbjct: 143 GDRLLDLDIPMSVGIIDTRTNPSQLNAVEFLWDPAKRTSAFIQVHCISTEFTPRKHGGEK 202
Query: 129 GVPFRIQVDTFVQDTTHR---HLHSASCQVKVFK 159
GVPFRIQVDTF Q+ HLHSASCQ+KVFK
Sbjct: 203 GVPFRIQVDTFKQNENGEYTDHLHSASCQIKVFK 236
>sp|Q5RB16|TF2L1_PONAB Transcription factor CP2-like protein 1 OS=Pongo abelii GN=TFCP2L1
PE=2 SV=1
Length = 457
Score = 177 bits (449), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 88/155 (56%), Positives = 110/155 (70%), Gaps = 12/155 (7%)
Query: 16 LTYLNQGQSYELKLK--------QDCGVKCLLMSVIRVSFHDRRLQYTEREQMCVWRAAH 67
LTYLNQGQSYE++L QD K + S+IRV F+DRRLQYTE +Q+ WR +
Sbjct: 66 LTYLNQGQSYEIRLLENRKLGDFQDLNTK-YVKSIIRVVFNDRRLQYTEHQQLEGWRWSR 124
Query: 68 PGHRILEVDLPLSYGIHDVLQDSATVNSVQFNWDPNKETGVYIKVNCISTEFTPKKHGGE 127
PG RIL++D+PLS GI D +N+V+F WDP K +I+V+CISTEFTP+KHGGE
Sbjct: 125 PGDRILDIDIPLSVGILDPRASPTQLNAVEFLWDPAKRASAFIQVHCISTEFTPRKHGGE 184
Query: 128 KGVPFRIQVDTFVQDTTH---RHLHSASCQVKVFK 159
KGVPFR+Q+DTF Q+ HLHSASCQ+KVFK
Sbjct: 185 KGVPFRVQIDTFKQNENGEYTEHLHSASCQIKVFK 219
>sp|Q7T2U9|TFCP2_CHICK Transcription factor CP2 OS=Gallus gallus GN=TFCP2 PE=2 SV=1
Length = 496
Score = 174 bits (442), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 84/154 (54%), Positives = 111/154 (72%), Gaps = 10/154 (6%)
Query: 16 LTYLNQGQSYELKLKQDCGVK-------CLLMSVIRVSFHDRRLQYTEREQMCVWRAAHP 68
LTYLNQGQSYE+++ + + L+ S+ RV FHDRRLQYTE +Q+ WR P
Sbjct: 86 LTYLNQGQSYEIRMLDNRKIGELPEINGKLVKSIFRVVFHDRRLQYTEHQQLEGWRWNRP 145
Query: 69 GHRILEVDLPLSYGIHDVLQDSATVNSVQFNWDPNKETGVYIKVNCISTEFTPKKHGGEK 128
G RIL++D+P+S GI D + +N+V+F WDP+K T V+I+V+CISTEFT +KHGGEK
Sbjct: 146 GDRILDIDIPMSVGIIDPRANPTQLNTVEFLWDPSKRTSVFIQVHCISTEFTMRKHGGEK 205
Query: 129 GVPFRIQVDTFVQDTTH---RHLHSASCQVKVFK 159
GVPFR+Q+DTF ++ HLHSASCQ+KVFK
Sbjct: 206 GVPFRVQIDTFKENENGEYTEHLHSASCQIKVFK 239
>sp|Q6NZH6|TFCP2_XENTR Transcription factor CP2 OS=Xenopus tropicalis GN=tfcp2 PE=2 SV=1
Length = 507
Score = 173 bits (438), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/154 (54%), Positives = 110/154 (71%), Gaps = 10/154 (6%)
Query: 16 LTYLNQGQSYELKLKQDCGVK-------CLLMSVIRVSFHDRRLQYTEREQMCVWRAAHP 68
LTYLNQGQSYE+++ + + L+ S+ RV FHDRRLQYTE +Q+ WR P
Sbjct: 86 LTYLNQGQSYEIRMLDNRKMGELPELNGKLVKSIFRVVFHDRRLQYTEHQQLEGWRWNRP 145
Query: 69 GHRILEVDLPLSYGIHDVLQDSATVNSVQFNWDPNKETGVYIKVNCISTEFTPKKHGGEK 128
G RIL++D+P+S GI D + +N+V+F WDP K T V+I+V+CISTEFT +KHGGEK
Sbjct: 146 GDRILDIDIPMSVGIIDPRANPTQLNTVEFLWDPAKRTSVFIQVHCISTEFTMRKHGGEK 205
Query: 129 GVPFRIQVDTFVQDTTH---RHLHSASCQVKVFK 159
GVPFR+Q+DTF ++ HLHSASCQ+KVFK
Sbjct: 206 GVPFRVQIDTFKENENGEYTEHLHSASCQIKVFK 239
>sp|Q9ERA0|TFCP2_MOUSE Alpha-globin transcription factor CP2 OS=Mus musculus GN=Tfcp2 PE=1
SV=1
Length = 502
Score = 173 bits (438), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 83/154 (53%), Positives = 111/154 (72%), Gaps = 10/154 (6%)
Query: 16 LTYLNQGQSYELKLKQDCGVK-------CLLMSVIRVSFHDRRLQYTEREQMCVWRAAHP 68
LTYLNQGQSYE+++ + + L+ S+ RV FHDRRLQYTE +Q+ WR P
Sbjct: 86 LTYLNQGQSYEIRMLDNRKLGELPELNGKLVKSIFRVVFHDRRLQYTEHQQLEGWRWNRP 145
Query: 69 GHRILEVDLPLSYGIHDVLQDSATVNSVQFNWDPNKETGVYIKVNCISTEFTPKKHGGEK 128
G RIL++D+P+S G+ D + +N+V+F WDP+K T V+I+V+CISTEFT +KHGGEK
Sbjct: 146 GDRILDIDIPMSVGVIDPRANPTQLNTVEFLWDPSKRTSVFIQVHCISTEFTMRKHGGEK 205
Query: 129 GVPFRIQVDTFVQDTTH---RHLHSASCQVKVFK 159
GVPFR+Q+DTF ++ HLHSASCQ+KVFK
Sbjct: 206 GVPFRVQIDTFKENGNGEYTEHLHSASCQIKVFK 239
>sp|Q12800|TFCP2_HUMAN Alpha-globin transcription factor CP2 OS=Homo sapiens GN=TFCP2 PE=1
SV=2
Length = 502
Score = 172 bits (437), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 84/154 (54%), Positives = 110/154 (71%), Gaps = 10/154 (6%)
Query: 16 LTYLNQGQSYELKLKQDCGVK-------CLLMSVIRVSFHDRRLQYTEREQMCVWRAAHP 68
LTYLNQGQSYE+++ + + L+ S+ RV FHDRRLQYTE +Q+ WR P
Sbjct: 86 LTYLNQGQSYEIRMLDNRKLGELPEINGKLVKSIFRVVFHDRRLQYTEHQQLEGWRWNRP 145
Query: 69 GHRILEVDLPLSYGIHDVLQDSATVNSVQFNWDPNKETGVYIKVNCISTEFTPKKHGGEK 128
G RIL++D+P+S GI D + +N+V+F WDP K T V+I+V+CISTEFT +KHGGEK
Sbjct: 146 GDRILDIDIPMSVGIIDPRANPTQLNTVEFLWDPAKRTSVFIQVHCISTEFTMRKHGGEK 205
Query: 129 GVPFRIQVDTFVQDTTH---RHLHSASCQVKVFK 159
GVPFR+Q+DTF ++ HLHSASCQ+KVFK
Sbjct: 206 GVPFRVQIDTFKENENGEYTEHLHSASCQIKVFK 239
>sp|Q4V860|TFCP2_XENLA Transcription factor CP2 OS=Xenopus laevis GN=tfcp2 PE=2 SV=1
Length = 506
Score = 170 bits (430), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 82/154 (53%), Positives = 109/154 (70%), Gaps = 10/154 (6%)
Query: 16 LTYLNQGQSYELKLKQDCGVK-------CLLMSVIRVSFHDRRLQYTEREQMCVWRAAHP 68
LTYLNQGQSYE+++ + + L+ S+ RV FHDRRLQYTE +Q+ WR P
Sbjct: 86 LTYLNQGQSYEIRMLDNRKIGELPELNGKLVKSIFRVVFHDRRLQYTEHQQLEGWRWNRP 145
Query: 69 GHRILEVDLPLSYGIHDVLQDSATVNSVQFNWDPNKETGVYIKVNCISTEFTPKKHGGEK 128
G RIL++D+P+S GI D + +N+++F WDP K T V+I+V+CISTEFT +KHGGEK
Sbjct: 146 GDRILDIDIPMSVGIIDPRANPTQLNTIEFLWDPAKRTSVFIQVHCISTEFTMRKHGGEK 205
Query: 129 GVPFRIQVDTFVQDTTH---RHLHSASCQVKVFK 159
GVPFR+Q+DTF ++ HLHSAS Q+KVFK
Sbjct: 206 GVPFRVQIDTFKENENGEYTEHLHSASSQIKVFK 239
>sp|Q5M7R9|GRHL2_XENTR Grainyhead-like protein 2 homolog OS=Xenopus tropicalis GN=grhl2
PE=2 SV=1
Length = 619
Score = 85.1 bits (209), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 87/156 (55%), Gaps = 19/156 (12%)
Query: 16 LTYLNQGQSYELKLKQDCGVKCL------LMSVIRVSFHDRRLQYTEREQMCVWRAAH-- 67
+TYLN+GQ Y + L + KC + SVI V F + + EQ+ W+ H
Sbjct: 262 MTYLNKGQFYAITLSETGANKCFRHPISKVRSVIMVVFSEDK---NRDEQLKYWKYWHSR 318
Query: 68 ---PGHRILEV-DLPLSYGIHDVLQDSATVNSVQFNWDPNKETGVYIKVNCISTEFTPKK 123
R+L++ D S+ +++ A N+V F WD N+E ++I VNC+ST+F+ +K
Sbjct: 319 QHTAKQRVLDIADYKESFNTIGNIEEIA-YNAVSFTWDVNEEAKIFITVNCLSTDFSSQK 377
Query: 124 HGGEKGVPFRIQVDTF-VQDTTHRHLHSASCQVKVF 158
G KG+P IQ+DT+ + +++ +H A CQ+KVF
Sbjct: 378 --GVKGLPLMIQIDTYSYNNRSNKPIHRAYCQIKVF 411
>sp|Q6ISB3|GRHL2_HUMAN Grainyhead-like protein 2 homolog OS=Homo sapiens GN=GRHL2 PE=1
SV=1
Length = 625
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 87/156 (55%), Gaps = 19/156 (12%)
Query: 16 LTYLNQGQSYELKLKQDCGVKCL------LMSVIRVSFHDRRLQYTEREQMCVWRAAH-- 67
+TYLN+GQ Y + L + KC + SV+ V F + + EQ+ W+ H
Sbjct: 267 MTYLNKGQFYAITLSETGDNKCFRHPISKVRSVVMVVFSEDK---NRDEQLKYWKYWHSR 323
Query: 68 ---PGHRILEV-DLPLSYGIHDVLQDSATVNSVQFNWDPNKETGVYIKVNCISTEFTPKK 123
R+L++ D S+ +++ A N+V F WD N+E ++I VNC+ST+F+ +K
Sbjct: 324 QHTAKQRVLDIADYKESFNTIGNIEEIA-YNAVSFTWDVNEEAKIFITVNCLSTDFSSQK 382
Query: 124 HGGEKGVPFRIQVDTF-VQDTTHRHLHSASCQVKVF 158
G KG+P IQ+DT+ + +++ +H A CQ+KVF
Sbjct: 383 --GVKGLPLMIQIDTYSYNNRSNKPIHRAYCQIKVF 416
>sp|Q8K5C0|GRHL2_MOUSE Grainyhead-like protein 2 homolog OS=Mus musculus GN=Grhl2 PE=2
SV=1
Length = 625
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 87/156 (55%), Gaps = 19/156 (12%)
Query: 16 LTYLNQGQSYELKLKQDCGVKCL------LMSVIRVSFHDRRLQYTEREQMCVWRAAH-- 67
+TYLN+GQ Y + L + KC + SV+ V F + + EQ+ W+ H
Sbjct: 267 MTYLNKGQFYAITLSETGDNKCFRHPISKVRSVVMVVFSEDK---NRDEQLKYWKYWHSR 323
Query: 68 ---PGHRILEV-DLPLSYGIHDVLQDSATVNSVQFNWDPNKETGVYIKVNCISTEFTPKK 123
R+L++ D S+ +++ A N+V F WD N+E ++I VNC+ST+F+ +K
Sbjct: 324 QHTAKQRVLDIADYKESFNTIGNIEEIA-YNAVSFTWDVNEEAKIFITVNCLSTDFSSQK 382
Query: 124 HGGEKGVPFRIQVDTF-VQDTTHRHLHSASCQVKVF 158
G KG+P IQ+DT+ + +++ +H A CQ+KVF
Sbjct: 383 --GVKGLPLMIQIDTYSYNNRSNKPIHRAYCQIKVF 416
>sp|Q8TE85|GRHL3_HUMAN Grainyhead-like protein 3 homolog OS=Homo sapiens GN=GRHL3 PE=1
SV=3
Length = 626
Score = 78.2 bits (191), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 92/167 (55%), Gaps = 22/167 (13%)
Query: 5 YVKSWEKSKSDLTYLNQGQSYELKLKQDCGVKCLLMS------VIRVSFHDRRLQYTERE 58
++KS E S + YLN+GQ Y + L+ G K L +S V+ V F + ++ E
Sbjct: 242 HIKSGE---SPMAYLNKGQFYPVTLRTPAGGKGLALSSNKVKSVVMVVFDNEKVPV---E 295
Query: 59 QMCVW-----RAAHPGHRILEV-DLPLSYGIHDVLQDSATVNSVQFNWDPNKETGVYIKV 112
Q+ W R R+++V D ++ + +++ A N++ F W+ N+E V+I V
Sbjct: 296 QLRFWKHWHSRQPTAKQRVIDVADCKENFNTVEHIEEVA-YNALSFVWNVNEEAKVFIGV 354
Query: 113 NCISTEFTPKKHGGEKGVPFRIQVDTF-VQDTTHRHLHSASCQVKVF 158
NC+ST+F+ +K G KGVP +Q+DT+ T R +H A CQ+K+F
Sbjct: 355 NCLSTDFSSQK--GVKGVPLNLQIDTYDCGLGTERLVHRAVCQIKIF 399
>sp|Q9NZI5|GRHL1_HUMAN Grainyhead-like protein 1 homolog OS=Homo sapiens GN=GRHL1 PE=1
SV=2
Length = 618
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 88/158 (55%), Gaps = 19/158 (12%)
Query: 14 SDLTYLNQGQSYELKLKQDCGVKCL------LMSVIRVSFHDRRLQYTEREQMCVWRAAH 67
S +TYLN+GQ Y + LK+ + + + SVI V F + + + +Q+ W+ H
Sbjct: 269 STMTYLNKGQFYPITLKEVSSSEGIHHPISKVRSVIMVVFAEDK---SREDQLRHWKYWH 325
Query: 68 -----PGHRILEV-DLPLSYGIHDVLQDSATVNSVQFNWDPNKETGVYIKVNCISTEFTP 121
R +++ D S+ +++ A N++ F WD N E V+I VNC+ST+F+
Sbjct: 326 SRQHTAKQRCIDIADYKESFNTISNIEEIA-YNAISFTWDINDEAKVFISVNCLSTDFSS 384
Query: 122 KKHGGEKGVPFRIQVDTF-VQDTTHRHLHSASCQVKVF 158
+K G KG+P IQVDT+ + +++ +H A CQ+KVF
Sbjct: 385 QK--GVKGLPLNIQVDTYSYNNRSNKPVHRAYCQIKVF 420
>sp|Q5EY87|GRHL1_XENLA Grainyhead-like protein 1 homolog OS=Xenopus laevis GN=grhl1 PE=2
SV=1
Length = 609
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 88/158 (55%), Gaps = 19/158 (12%)
Query: 14 SDLTYLNQGQSYELKLKQDCGVKCL------LMSVIRVSFHDRRLQYTEREQMCVWRAAH 67
S +TYLN+GQ Y + LK+ K + + SVI V F D + + +Q+ W+ H
Sbjct: 260 STMTYLNKGQFYPITLKEIGSNKGIHHPISKVRSVIMVVFADDK---SREDQLRHWKYWH 316
Query: 68 -----PGHRILEV-DLPLSYGIHDVLQDSATVNSVQFNWDPNKETGVYIKVNCISTEFTP 121
R +++ D S+ +++ A N++ F WD N E V+I VNC+ST+F+
Sbjct: 317 SRQHTAKQRCIDIADYKESFNTISNIEEIA-YNAISFTWDLNDEGKVFISVNCLSTDFSS 375
Query: 122 KKHGGEKGVPFRIQVDTF-VQDTTHRHLHSASCQVKVF 158
+K G KG+P +Q+DT+ + +++ +H A CQ+KVF
Sbjct: 376 QK--GVKGLPLNLQIDTYSYNNRSNKPVHRAYCQIKVF 411
>sp|Q921D9|GRHL1_MOUSE Grainyhead-like protein 1 homolog OS=Mus musculus GN=Grhl1 PE=1
SV=1
Length = 618
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 88/158 (55%), Gaps = 19/158 (12%)
Query: 14 SDLTYLNQGQSYELKLKQDCGVKCL------LMSVIRVSFHDRRLQYTEREQMCVWRAAH 67
S +TYLN+GQ Y + LK+ + + + SVI V F + + + +Q+ W+ H
Sbjct: 269 STMTYLNKGQFYPVTLKEGSSNEGIHHPISKVRSVIMVVFAEDK---SREDQLRHWKYWH 325
Query: 68 -----PGHRILEV-DLPLSYGIHDVLQDSATVNSVQFNWDPNKETGVYIKVNCISTEFTP 121
R +++ D S+ +++ A N++ F WD N E V+I VNC+ST+F+
Sbjct: 326 SRQHTAKQRCIDIADYKESFNTISNIEEIA-YNAISFTWDINDEAKVFISVNCLSTDFSS 384
Query: 122 KKHGGEKGVPFRIQVDTF-VQDTTHRHLHSASCQVKVF 158
+K G KG+P IQ+DT+ + +++ +H A CQ+KVF
Sbjct: 385 QK--GVKGLPLNIQIDTYSYNNRSNKPVHRAYCQIKVF 420
>sp|Q5RAR8|GRHL1_PONAB Grainyhead-like protein 1 homolog OS=Pongo abelii GN=GRHL1 PE=2
SV=1
Length = 618
Score = 74.3 bits (181), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 87/158 (55%), Gaps = 19/158 (12%)
Query: 14 SDLTYLNQGQSYELKLKQDCGVKCL------LMSVIRVSFHDRRLQYTEREQMCVWRAAH 67
S +TYLN+GQ Y + LK+ + + + SV V F + + + +Q+ W+ H
Sbjct: 269 STMTYLNKGQFYPITLKEVSSNEGIHHPISKVRSVTMVVFAEDK---SREDQLRHWKYWH 325
Query: 68 -----PGHRILEV-DLPLSYGIHDVLQDSATVNSVQFNWDPNKETGVYIKVNCISTEFTP 121
R +++ D S+ +++ A N++ F WD N E V+I VNC+ST+F+
Sbjct: 326 SRQHTAKQRCIDIADYKESFNTISNIEEIA-YNAISFTWDINDEAKVFISVNCLSTDFSS 384
Query: 122 KKHGGEKGVPFRIQVDTF-VQDTTHRHLHSASCQVKVF 158
+K G KG+P IQ+DT+ + +++ +H A CQ+KVF
Sbjct: 385 QK--GVKGLPLNIQIDTYSYNNRSNKPVHRAYCQIKVF 420
>sp|Q6GL65|GRHL3_XENTR Grainyhead-like protein 3 homolog OS=Xenopus tropicalis GN=grhl3
PE=2 SV=1
Length = 594
Score = 74.3 bits (181), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 91/167 (54%), Gaps = 22/167 (13%)
Query: 5 YVKSWEKSKSDLTYLNQGQSYELKLKQDCGVKCL------LMSVIRVSFHDRRLQYTERE 58
++KS E S + YLN+GQ Y + L+ KC+ + SV+ V F + + E
Sbjct: 235 HIKSGE---SPMAYLNKGQFYPVNLRTAETRKCVHLTSNKVKSVVMVVFDNEK---NPEE 288
Query: 59 QMCVW-----RAAHPGHRILEV-DLPLSYGIHDVLQDSATVNSVQFNWDPNKETGVYIKV 112
Q+ W R R+++V D + + +++ A N++ F W+ N+E ++I +
Sbjct: 289 QLKRWKHWHSRQPTAKQRVIDVADYKENCNTVENIEEVA-YNALSFVWNINEEAKIFIGI 347
Query: 113 NCISTEFTPKKHGGEKGVPFRIQVDTFVQDT-THRHLHSASCQVKVF 158
NC+ST+F+ +K G KGVP +Q+DT+ +T R +H A CQ+K+F
Sbjct: 348 NCLSTDFSSQK--GVKGVPLNLQIDTYDFETGVKRLIHRAVCQIKIF 392
>sp|Q5PPL8|GRHL3_XENLA Grainyhead-like protein 3 homolog OS=Xenopus laevis GN=grhl3 PE=2
SV=1
Length = 595
Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 90/167 (53%), Gaps = 22/167 (13%)
Query: 5 YVKSWEKSKSDLTYLNQGQSYELKLKQDCGVKCL------LMSVIRVSFHDRRLQYTERE 58
++KS E S + YLN+GQ Y + L+ KC+ + SV+ V F + + E
Sbjct: 236 HIKSGE---SPMAYLNKGQFYPVNLRTAEIRKCVHLTSNKVKSVVMVVFDNEK---NPEE 289
Query: 59 QMCVW-----RAAHPGHRILEV-DLPLSYGIHDVLQDSATVNSVQFNWDPNKETGVYIKV 112
Q+ W R R+++V D + + +++ A N++ F W+ N E ++I +
Sbjct: 290 QLKRWKHWHSRQPTAKQRVIDVADYKENCNTVENIEEVA-YNALSFVWNVNDEAKIFIGL 348
Query: 113 NCISTEFTPKKHGGEKGVPFRIQVDTFVQDT-THRHLHSASCQVKVF 158
NC+ST+F+ +K G KGVP +Q+DT+ +T R +H A CQ+K+F
Sbjct: 349 NCLSTDFSSQK--GVKGVPLNLQIDTYDFETGVKRLIHRAVCQIKIF 393
>sp|Q5FWH3|GRHL3_MOUSE Grainyhead-like protein 3 homolog OS=Mus musculus GN=Grhl3 PE=2
SV=1
Length = 603
Score = 72.0 bits (175), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 83/155 (53%), Gaps = 11/155 (7%)
Query: 13 KSDLTYLNQGQSYELKLKQDCGVKCLLMSVIRVSFHDRRLQYTER---EQMCVWR---AA 66
+S + YLN+GQ Y + L+ G K L +S +V + ++ EQ+ WR +
Sbjct: 247 ESPMAYLNKGQFYPVTLRTPAGGKGLALSSSKVKSVVMVVFDNDKVPVEQLRFWRHWHSR 306
Query: 67 HPGHRILEVDLPLSYGIHDVLQ--DSATVNSVQFNWDPNKETGVYIKVNCISTEFTPKKH 124
P + +D+ + +Q + N++ F W+ N+E V+I VNC+ST+F+ +K
Sbjct: 307 QPTAKQRVIDVADCKENFNTVQHIEEVAYNALSFVWNVNEEAKVFIGVNCLSTDFSSQK- 365
Query: 125 GGEKGVPFRIQVDTF-VQDTTHRHLHSASCQVKVF 158
G KGVP +Q+DT+ T R +H A CQ+K+F
Sbjct: 366 -GVKGVPLNLQIDTYDCGAGTERLVHRAVCQIKIF 399
>sp|P13002|ELF1_DROME Protein grainyhead OS=Drosophila melanogaster GN=grh PE=2 SV=3
Length = 1333
Score = 68.2 bits (165), Expect = 7e-11, Method: Composition-based stats.
Identities = 49/170 (28%), Positives = 86/170 (50%), Gaps = 20/170 (11%)
Query: 2 VDSYVKSWEKSKSD-LTYLNQGQSYELKLK---------QDCGVKCLLMSVIRVSFHDRR 51
++S + S ++ + D +TY+N+GQ Y + L+ ++ VK SVI + F + +
Sbjct: 907 LESPISSSQRREDDRITYINKGQFYGITLEYVHDAEKPIKNTTVK----SVIMLMFREEK 962
Query: 52 LQYTEREQMCVW--RAAHPGHRILEVDLPLSYGIHDVLQDSATVNSVQFNWDPNKETG-V 108
E + W R RIL+ D S G+ +++ + N++ W+P + + +
Sbjct: 963 SPEDEIKAWQFWHSRQHSVKQRILDADTKNSVGLVGCIEE-VSHNAIAVYWNPLESSAKI 1021
Query: 109 YIKVNCISTEFTPKKHGGEKGVPFRIQVDTFVQDTTHRHLHSASCQVKVF 158
I V C+ST+F+ +K G KG+P +Q+DTF H CQ+KVF
Sbjct: 1022 NIAVQCLSTDFSSQK--GVKGLPLHVQIDTFEDPRDTAVFHRGYCQIKVF 1069
>sp|Q9CLG7|RMUC_PASMU DNA recombination protein RmuC homolog OS=Pasteurella multocida
(strain Pm70) GN=rmuC PE=3 SV=2
Length = 509
Score = 32.0 bits (71), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 213 FEPEIQCVIEVGQIRKQLQFRTTTAISKERMVWGRWHEVE-DLAVAVVGNLSGD 265
E EI+ V+E+G Q T+A+ E+ G W EV+ + A+ + G L G+
Sbjct: 211 LEAEIKKVLEIGLNMSQQADNLTSALKGEKKTLGNWGEVQLERALQLAGLLEGE 264
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.135 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,969,516
Number of Sequences: 539616
Number of extensions: 4167635
Number of successful extensions: 6936
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 6859
Number of HSP's gapped (non-prelim): 24
length of query: 286
length of database: 191,569,459
effective HSP length: 116
effective length of query: 170
effective length of database: 128,974,003
effective search space: 21925580510
effective search space used: 21925580510
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)