Query psy5929
Match_columns 286
No_of_seqs 105 out of 157
Neff 3.7
Searched_HMMs 29240
Date Fri Aug 16 22:03:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5929.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5929hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zou_A Spondin-1; beta-sandwic 68.9 36 0.0012 27.9 9.5 108 20-137 36-147 (149)
2 3coo_A Spondin-1; reelin-N dom 45.7 1.1E+02 0.0037 26.2 8.8 115 15-140 47-165 (180)
3 3rgh_A Filamin-A; cell adhesio 14.8 3.2E+02 0.011 20.3 5.5 34 94-137 63-98 (100)
4 2yzc_A Uricase; oxidoreductase 14.0 39 0.0013 31.7 0.1 27 246-274 34-60 (302)
5 3l8w_A Uricase, urate oxidase; 10.4 64 0.0022 30.1 0.3 28 246-275 25-52 (296)
6 2xsk_A CSGC; chaperone; 1.70A 9.4 1.5E+02 0.0051 24.1 2.1 17 145-161 23-39 (110)
7 4go6_A HCF N-terminal chain 1; 8.9 1.9E+02 0.0066 20.1 2.2 21 90-110 17-37 (45)
8 1nbw_B Glycerol dehydratase re 8.0 75 0.0026 25.8 -0.2 7 127-133 108-114 (117)
9 3pes_A Uncharacterized protein 6.5 1.9E+02 0.0066 22.3 1.4 28 113-144 2-29 (85)
10 1wft_A 1700129L13RIK protein; 6.0 7.5E+02 0.026 20.4 4.8 45 90-141 55-102 (123)
No 1
>2zou_A Spondin-1; beta-sandwich, extracellular protein, cell adhesion, extrace matrix, glycoprotein, secreted; 1.45A {Homo sapiens}
Probab=68.85 E-value=36 Score=27.93 Aligned_cols=108 Identities=10% Similarity=0.179 Sum_probs=59.7
Q ss_pred cCCceEEEEEeecCCCceeEeEEEEEEEecCccccChHHHhhcccccCCCC-cEEEEeccCc-ccccccccCccccceEE
Q psy5929 20 NQGQSYELKLKQDCGVKCLLMSVIRVSFHDRRLQYTEREQMCVWRAAHPGH-RILEVDLPLS-YGIHDVLQDSATVNSVQ 97 (286)
Q Consensus 20 NKGQ~Y~ItL~d~~~~~~~vKSvIrV~F~d~k~r~~e~eq~~~W~~w~pg~-RiLdID~~~S-~Gi~d~~~~~~~lNavs 97 (286)
.-|+.|.|+|.... . ..+|.++...+..........+.+-.|+.-..+. ++++ +| ..+.+. ....-..++
T Consensus 36 ~pG~~~~VtL~~~~-~-~~F~GFllqAr~~~~~~~~~~~~vG~F~~~~~~~tk~~~----~C~naVTH~--~~~~K~~v~ 107 (149)
T 2zou_A 36 KPGTSYRVTLSAAP-P-SYFRGFTLIALRENREGDKEEDHAGTFQIIDEEETQFMS----NCPVAVTES--TPRRRTRIQ 107 (149)
T ss_dssp CTTCEEEEEEEECT-T-CCBSEEEEEEEETTCCSCSGGGBCSEEEESCTTTEEEET----TEEEEEEES--SCCCBSEEE
T ss_pred cCCCcEEEEEeccC-C-CceEEEEEEEEecCCccCCCCcceEEEEeCCCCcccccc----CCcCccEec--CCCCCcEeE
Confidence 48999999998643 2 4689998888876553222333466777654443 5543 12 122221 222345789
Q ss_pred EEecCCC--ceeEEEEEeeeecccCCCCCCcccCceeEEEee
Q psy5929 98 FNWDPNK--ETGVYIKVNCISTEFTPKKHGGEKGVPFRIQVD 137 (286)
Q Consensus 98 F~Wdp~~--ea~I~IrvNCLSTDFS~~KhGGvKGVPfRLqID 137 (286)
|.|.+.+ .-.|.++.=.+=....=-. ..-++-.|||.+
T Consensus 108 v~W~AP~~~~G~V~F~ATVvq~~~~~~~--d~g~ltk~~C~~ 147 (149)
T 2zou_A 108 VFWIAPPAGTGCVILKASIVQKRIIYFQ--DEGSLTKKLCEQ 147 (149)
T ss_dssp EEEECCCTTCCCEEEEEEEESSSEECCC--SSSTTEEEECBC
T ss_pred EEEeCCCCCCccEEEEEEEEeccCEEEe--cCCcHHhhhccC
Confidence 9998754 3346666544433311111 222566666654
No 2
>3coo_A Spondin-1; reelin-N domain, cell adhesion, extracellular MAT glycoprotein, secreted; 2.00A {Homo sapiens} PDB: 2zot_A
Probab=45.74 E-value=1.1e+02 Score=26.23 Aligned_cols=115 Identities=10% Similarity=0.162 Sum_probs=65.1
Q ss_pred ceeEecCCceEEEEEeecCCCceeEeEEEEEEEecCccccChHHHhhcccccCCCC-cEEEEeccCcc-cccccccCccc
Q psy5929 15 DLTYLNQGQSYELKLKQDCGVKCLLMSVIRVSFHDRRLQYTEREQMCVWRAAHPGH-RILEVDLPLSY-GIHDVLQDSAT 92 (286)
Q Consensus 15 plTYLNKGQ~Y~ItL~d~~~~~~~vKSvIrV~F~d~k~r~~e~eq~~~W~~w~pg~-RiLdID~~~S~-Gi~d~~~~~~~ 92 (286)
+-+| .-||.|.|+|.... + ..+|.++-..+..........+.+-.|+.-..+. |+++ +|. .+.+. ....
T Consensus 47 ~~~y-~pG~~~~VtL~g~~-~-~~F~GFlLqAr~~~~~~~~~~~~vGtF~~~~~~~tk~~~----~C~naVTHt--n~~~ 117 (180)
T 3coo_A 47 PDFY-KPGTSYRVTLSAAP-P-SYFRGFTLIALRENREGDKEEDHAGTFQIIDEEETQFMS----NCPVAVTES--TPRR 117 (180)
T ss_dssp CSEE-CTTCEEEEEEEECT-T-CCBSCCEEEEEETTCCSSSGGGBCSEEECSCTTTEEEET----TEEEEEEES--SCCC
T ss_pred Ccee-cCCCcEEEEEeccC-C-CceeEEEEEEEcCCCCccCCCCceeEEEecCCccccccc----cCcCccEec--CCCC
Confidence 3344 58999999998542 2 4688888888776543222333466777654333 5442 121 22221 2223
Q ss_pred cceEEEEecCCC--ceeEEEEEeeeecccCCCCCCcccCceeEEEeeeee
Q psy5929 93 VNSVQFNWDPNK--ETGVYIKVNCISTEFTPKKHGGEKGVPFRIQVDTFV 140 (286)
Q Consensus 93 lNavsF~Wdp~~--ea~I~IrvNCLSTDFS~~KhGGvKGVPfRLqIDT~~ 140 (286)
-..++|.|.+.+ .-.|.++.=.+=.... - .+=+-++.-+||.+.-.
T Consensus 118 K~~V~v~W~AP~~~~G~V~FrATVvq~~~v-W-~~~~g~Ltk~~C~~~~~ 165 (180)
T 3coo_A 118 RTRIQVFWIAPPAGTGCVILKASIVQKRII-Y-FQDEGSLTKKLCEQDST 165 (180)
T ss_dssp BSEEEEEEECCCTTCCCEEEEEECCCSSSE-E-ECSSSTTEEEEEECC--
T ss_pred CceeEEEEeCCCCCCccEEEEEEEEeCCCE-E-EecCCchhhhhhccccc
Confidence 357899998754 3346666555444333 2 12345788899998864
No 3
>3rgh_A Filamin-A; cell adhesion, cytoskeleton-complex, disease mutation, immun like, cytoskeleton, actin-binding, cell junction, shape; HET: CME; 2.44A {Homo sapiens} SCOP: b.1.18.0
Probab=14.78 E-value=3.2e+02 Score=20.31 Aligned_cols=34 Identities=21% Similarity=0.239 Sum_probs=22.1
Q ss_pred ceEEEEecCCCce--eEEEEEeeeecccCCCCCCcccCceeEEEee
Q psy5929 94 NSVQFNWDPNKET--GVYIKVNCISTEFTPKKHGGEKGVPFRIQVD 137 (286)
Q Consensus 94 NavsF~Wdp~~ea--~I~IrvNCLSTDFS~~KhGGvKGVPfRLqID 137 (286)
....+.+.|.... .|.|++| . + =++|=||++.|+
T Consensus 63 Gty~V~Y~p~~~G~y~i~V~~~-------g-~--~V~gSPf~v~V~ 98 (100)
T 3rgh_A 63 GTHTITYIPLCPGAYTVTIKYG-------G-Q--PVPNFPSKLQVE 98 (100)
T ss_dssp SEEEEEEECCSSEEEEEEEEET-------T-E--ECTTCSEEEEEE
T ss_pred CEEEEEEEeCCCeeEEEEEEEC-------C-E--ECCCCCEEEEEe
Confidence 4567778886644 3444432 1 2 288999999986
No 4
>2yzc_A Uricase; oxidoreductase, allantoate; HET: 1AL; 1.88A {Arthrobacter globiformis} SCOP: d.96.1.4 d.96.1.4 PDB: 2yzb_A* 2yzd_A* 2yze_A 1vax_A 1vay_A*
Probab=14.04 E-value=39 Score=31.69 Aligned_cols=27 Identities=41% Similarity=0.620 Sum_probs=23.7
Q ss_pred cceeeccceeeeeeccCCcCCCccccccc
Q psy5929 246 GRWHEVEDLAVAVVGNLSGDFDDNFTEGL 274 (286)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (286)
|+.|++-++-|.|. |.|||+..||+|=
T Consensus 34 ~~~H~i~e~~V~v~--L~Gd~~~syt~gD 60 (302)
T 2yzc_A 34 TARHEIQDLNVTSQ--LRGDFEAAHTAGD 60 (302)
T ss_dssp SSSCEEEEEEEEEE--EEECCHHHHHTCC
T ss_pred CCccEEEEEEEEEE--Eeecchhhhhccc
Confidence 67899999998875 8999999999984
No 5
>3l8w_A Uricase, urate oxidase; oxidoreductase, URIC acid degradation, xanthine, inhibition aspergillus flavus, peroxisome, purine metabolism; HET: XAN 4PO; 1.00A {Aspergillus flavus} PDB: 3l9g_A* 3lbg_A* 3ld4_A* 3bk8_A* 1r4s_A* 1r51_A* 1r56_A 1r4u_A* 1ws2_A* 1ws3_A 1xt4_A* 1xxj_A* 1xy3_A* 2fub_A* 2fxl_A* 3bjp_A* 1wrr_A* 3gko_A* 3p9o_A 2ic0_A* ...
Probab=10.44 E-value=64 Score=30.11 Aligned_cols=28 Identities=21% Similarity=0.431 Sum_probs=23.6
Q ss_pred cceeeccceeeeeeccCCcCCCcccccccc
Q psy5929 246 GRWHEVEDLAVAVVGNLSGDFDDNFTEGLG 275 (286)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (286)
|.+|++-++-|.|. |.|||+..||+|=.
T Consensus 25 ~~~H~I~e~~V~v~--L~Gd~~~syt~gDN 52 (296)
T 3l8w_A 25 TGVQTVYEMTVCVL--LEGEIETSYTKADN 52 (296)
T ss_dssp TCCEEEEEEEEEEE--EEESCHHHHHSCCG
T ss_pred CCceEEEEEEEEEE--EeecchhhhhcccC
Confidence 45899999998885 77999999999854
No 6
>2xsk_A CSGC; chaperone; 1.70A {Escherichia coli} PDB: 2y2y_A 2y2t_A
Probab=9.36 E-value=1.5e+02 Score=24.13 Aligned_cols=17 Identities=12% Similarity=0.165 Sum_probs=13.2
Q ss_pred CCcceEeeeEeeeecCC
Q psy5929 145 HRHLHSASCQVKVFKVS 161 (286)
Q Consensus 145 ~~~lh~ayCQIKVFrdK 161 (286)
....+.|.|||.|.-.+
T Consensus 23 VTlt~aC~CqV~i~~~R 39 (110)
T 2xsk_A 23 VTLTQSXLXRVQILSLR 39 (110)
T ss_dssp EECSSCEEEEEEEEEEE
T ss_pred EEeeccceeeEEEEEEE
Confidence 35578999999998644
No 7
>4go6_A HCF N-terminal chain 1; tandem fibronectin repeat, protein interaction, transcriptio protein binding; 2.70A {Homo sapiens}
Probab=8.93 E-value=1.9e+02 Score=20.14 Aligned_cols=21 Identities=24% Similarity=0.563 Sum_probs=16.5
Q ss_pred ccccceEEEEecCCCceeEEE
Q psy5929 90 SATVNSVQFNWDPNKETGVYI 110 (286)
Q Consensus 90 ~~~lNavsF~Wdp~~ea~I~I 110 (286)
....|++++.|+|-+.|.-||
T Consensus 17 RAst~sLEv~W~~vptA~~Yi 37 (45)
T 4go6_A 17 RANTNSLEVSWGAVATADSYL 37 (45)
T ss_dssp EECSSCEEEEEECCTTCSEEE
T ss_pred EeccceEEEEcCCCcchheeE
Confidence 457899999999988775554
No 8
>1nbw_B Glycerol dehydratase reactivase beta subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.51.3.2
Probab=8.04 E-value=75 Score=25.77 Aligned_cols=7 Identities=29% Similarity=0.439 Sum_probs=6.1
Q ss_pred ccCceeE
Q psy5929 127 EKGVPFR 133 (286)
Q Consensus 127 vKGVPfR 133 (286)
|||+||+
T Consensus 108 vKG~Pfk 114 (117)
T 1nbw_B 108 VKVLPLS 114 (117)
T ss_dssp HHTCCCC
T ss_pred HhCCCCC
Confidence 7999996
No 9
>3pes_A Uncharacterized protein GP49; PSI2, structural genomics, protein structure initiative, MID center for structural genomics, MCSG; 1.30A {Pseudomonas phage yua}
Probab=6.48 E-value=1.9e+02 Score=22.28 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=21.8
Q ss_pred eeeecccCCCCCCcccCceeEEEeeeeecCCC
Q psy5929 113 NCISTEFTPKKHGGEKGVPFRIQVDTFVQDTT 144 (286)
Q Consensus 113 NCLSTDFS~~KhGGvKGVPfRLqIDT~~~~~~ 144 (286)
|..-|+|-.+ |.|||--|.+..|...+.
T Consensus 2 nami~E~~~R----VsGIPCLI~V~~~~~Y~P 29 (85)
T 3pes_A 2 NAMLAEFEDR----VAGIPCLIVVTYWEPYVP 29 (85)
T ss_dssp -CCCEEEEEE----ETTEEEEEEEEEEECCBC
T ss_pred cchhhhhhhh----ccCCceEEEEeeccccCC
Confidence 5566888774 899999999999986553
No 10
>1wft_A 1700129L13RIK protein; FN3 domain, similar to HOST cell factor 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1
Probab=6.02 E-value=7.5e+02 Score=20.38 Aligned_cols=45 Identities=11% Similarity=0.211 Sum_probs=27.1
Q ss_pred ccccceEEEEecCCCceeEEEEEeeeec---ccCCCCCCcccCceeEEEeeeeec
Q psy5929 90 SATVNSVQFNWDPNKETGVYIKVNCIST---EFTPKKHGGEKGVPFRIQVDTFVQ 141 (286)
Q Consensus 90 ~~~lNavsF~Wdp~~ea~I~IrvNCLST---DFS~~KhGGvKGVPfRLqIDT~~~ 141 (286)
+.+++.+.++=-+...|.| .-+-||+ |+|.+- -|=|||++.-...
T Consensus 55 ~~qL~FvrVYcG~~~~C~V--~~~~L~~ahid~t~kp-----AiiFRIaArNeKG 102 (123)
T 1wft_A 55 PSQLVFMRIYCGLKTSCTV--TAGQLANAHIDYTSRP-----AIVFRISAKNEKG 102 (123)
T ss_dssp SCCCEEEEEEEESCSEEEE--EHHHHTTCCCBCSSSC-----EEEEEEEEBSSSS
T ss_pred cCeeeEEEEEecCCcceEe--cccchhhhhhccCCCc-----eEEEEEEeecCCC
Confidence 4455555555544443332 2234555 888865 7889999987664
Done!