Query psy5929
Match_columns 286
No_of_seqs 105 out of 157
Neff 3.7
Searched_HMMs 13730
Date Fri Aug 16 22:03:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5929.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5929hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1j2ga1 d.96.1.4 (A:7-158) Ura 44.2 2.3 0.00017 34.3 0.1 27 246-274 33-60 (152)
2 d2yzca1 d.96.1.4 (A:11-141) Ur 23.5 8.3 0.0006 30.2 0.1 28 246-275 24-51 (131)
3 d1xhca3 d.87.1.1 (A:290-351) N 16.7 28 0.002 24.0 1.7 16 250-265 14-29 (62)
4 d2d0ob1 c.51.3.2 (B:5-112) Dio 16.5 14 0.001 27.9 0.1 7 127-133 102-108 (108)
5 d2gu3a1 d.17.1.6 (A:99-161) Un 14.2 1.1E+02 0.008 20.6 4.3 25 16-41 36-60 (63)
6 d1nbwb_ c.51.3.2 (B:) Glycerol 11.0 23 0.0017 26.9 -0.2 7 127-133 104-110 (113)
7 d2ibaa1 d.96.1.4 (A:1-136) Ura 10.3 30 0.0022 27.0 0.2 25 248-274 26-50 (136)
8 d1sgja_ c.1.12.5 (A:) Citrate 7.4 62 0.0045 25.8 1.0 17 104-120 64-80 (231)
9 d1fnha2 b.1.2.1 (A:93-182) Fib 6.9 1E+02 0.0074 19.8 1.8 27 89-115 11-37 (90)
10 d1kt7a_ b.60.1.1 (A:) Retinol 6.8 39 0.0029 24.9 -0.5 16 237-253 14-29 (175)
No 1
>d1j2ga1 d.96.1.4 (A:7-158) Urate oxidase (uricase) {Bacillus sp., strain TB-90 [TaxId: 1409]}
Probab=44.19 E-value=2.3 Score=34.33 Aligned_cols=27 Identities=30% Similarity=0.439 Sum_probs=23.9
Q ss_pred cceeeccceeeeeeccCCc-CCCccccccc
Q psy5929 246 GRWHEVEDLAVAVVGNLSG-DFDDNFTEGL 274 (286)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 274 (286)
|+||++-|+-|-|. |.| ||+..||+|-
T Consensus 33 g~~H~I~e~~V~v~--L~G~d~~~syt~GD 60 (152)
T d1j2ga1 33 GRDHILFGVNVKIS--VGGTKLLTSFTKGD 60 (152)
T ss_dssp CBCCSEEEEEEEEE--EECGGGHHHHHTCC
T ss_pred CCccEEEEEEEEEE--EecCcchhhhccCC
Confidence 89999999988874 899 7999999985
No 2
>d2yzca1 d.96.1.4 (A:11-141) Urate oxidase (uricase) {Arthrobacter globiformis [TaxId: 1665]}
Probab=23.49 E-value=8.3 Score=30.23 Aligned_cols=28 Identities=39% Similarity=0.603 Sum_probs=24.0
Q ss_pred cceeeccceeeeeeccCCcCCCcccccccc
Q psy5929 246 GRWHEVEDLAVAVVGNLSGDFDDNFTEGLG 275 (286)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (286)
|.+|++-|+-|.|. |.|||+..+|+|-.
T Consensus 24 ~~~H~i~e~~V~v~--L~gd~~~syt~gDN 51 (131)
T d2yzca1 24 TARHEIQDLNVTSQ--LRGDFEAAHTAGDN 51 (131)
T ss_dssp SSSCEEEEEEEEEE--EEECCHHHHHTCCC
T ss_pred CCCcEEEEEEEEEE--EEeccchheeecCC
Confidence 67999999988774 89999999999853
No 3
>d1xhca3 d.87.1.1 (A:290-351) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}
Probab=16.72 E-value=28 Score=24.02 Aligned_cols=16 Identities=31% Similarity=0.729 Sum_probs=13.7
Q ss_pred eccceeeeeeccCCcC
Q psy5929 250 EVEDLAVAVVGNLSGD 265 (286)
Q Consensus 250 ~~~~~~~~~~~~~~~~ 265 (286)
..-|+.+|++|++.|+
T Consensus 14 Kfgd~~iAiiG~~~g~ 29 (62)
T d1xhca3 14 KFGKLQIAIIGNTKGE 29 (62)
T ss_dssp EETTEEEEEEECCSSC
T ss_pred eeCCccEEEEEeccCc
Confidence 4579999999999885
No 4
>d2d0ob1 c.51.3.2 (B:5-112) Diol dehydratase-reactivating factor small subunit DdrB {Klebsiella oxytoca [TaxId: 571]}
Probab=16.53 E-value=14 Score=27.93 Aligned_cols=7 Identities=71% Similarity=1.440 Sum_probs=6.0
Q ss_pred ccCceeE
Q psy5929 127 EKGVPFR 133 (286)
Q Consensus 127 vKGVPfR 133 (286)
|||+||+
T Consensus 102 vKG~Pfk 108 (108)
T d2d0ob1 102 VKGIPFR 108 (108)
T ss_dssp HTTCCCC
T ss_pred HhCCCCC
Confidence 7999986
No 5
>d2gu3a1 d.17.1.6 (A:99-161) Uncharacterized protein YpmB {Bacillus subtilis [TaxId: 1423]}
Probab=14.20 E-value=1.1e+02 Score=20.63 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=16.0
Q ss_pred eeEecCCceEEEEEeecCCCceeEeE
Q psy5929 16 LTYLNQGQSYELKLKQDCGVKCLLMS 41 (286)
Q Consensus 16 lTYLNKGQ~Y~ItL~d~~~~~~~vKS 41 (286)
|||+|+..-|+-.+.+-..+ ..+|+
T Consensus 36 VtY~~~~~~l~Y~~~~F~~G-~~lk~ 60 (63)
T d2gu3a1 36 VTYLDKEGQYSLSYVDFTTG-KILKN 60 (63)
T ss_dssp EEEECTTSCEEEEEEETTTC-CEEEE
T ss_pred EEEEeCCCCEEEEEEEecCC-cEEee
Confidence 68999888777666653222 34554
No 6
>d1nbwb_ c.51.3.2 (B:) Glycerol dehydratase reactivase, beta subunit {Klebsiella pneumoniae [TaxId: 573]}
Probab=11.03 E-value=23 Score=26.91 Aligned_cols=7 Identities=29% Similarity=0.439 Sum_probs=6.0
Q ss_pred ccCceeE
Q psy5929 127 EKGVPFR 133 (286)
Q Consensus 127 vKGVPfR 133 (286)
|||+||+
T Consensus 104 vKg~Pf~ 110 (113)
T d1nbwb_ 104 VKVLPLS 110 (113)
T ss_dssp HHTCCCC
T ss_pred HhcCCCc
Confidence 7999986
No 7
>d2ibaa1 d.96.1.4 (A:1-136) Urate oxidase (uricase) {Aspergillus flavus [TaxId: 5059]}
Probab=10.32 E-value=30 Score=27.00 Aligned_cols=25 Identities=24% Similarity=0.505 Sum_probs=21.4
Q ss_pred eeeccceeeeeeccCCcCCCccccccc
Q psy5929 248 WHEVEDLAVAVVGNLSGDFDDNFTEGL 274 (286)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (286)
.|++-|+-|.+. |.|||++.||+|=
T Consensus 26 ~H~I~E~~V~v~--L~gd~~~syt~GD 50 (136)
T d2ibaa1 26 VQTVYEMTVCVL--LEGEIETSYTKAD 50 (136)
T ss_dssp CEEEEEEEEEEE--EEESCHHHHHSCC
T ss_pred cEEEEEEEEEEE--EEecchhhhhcCC
Confidence 399999888774 8999999999984
No 8
>d1sgja_ c.1.12.5 (A:) Citrate lyase, beta subunit {Deinococcus radiodurans [TaxId: 1299]}
Probab=7.36 E-value=62 Score=25.81 Aligned_cols=17 Identities=18% Similarity=0.540 Sum_probs=13.7
Q ss_pred CceeEEEEEeeeecccC
Q psy5929 104 KETGVYIKVNCISTEFT 120 (286)
Q Consensus 104 ~ea~I~IrvNCLSTDFS 120 (286)
+...++||||.++|.+-
T Consensus 64 ~~~~~~VRIN~~~t~~~ 80 (231)
T d1sgja_ 64 PHLAVFVRVNALHSPYF 80 (231)
T ss_dssp TTSEEEEECCCTTSTTH
T ss_pred CCcceEEeeccCcchHH
Confidence 45679999999998753
No 9
>d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.86 E-value=1e+02 Score=19.79 Aligned_cols=27 Identities=22% Similarity=0.429 Sum_probs=16.5
Q ss_pred CccccceEEEEecCCCceeEEEEEeee
Q psy5929 89 DSATVNSVQFNWDPNKETGVYIKVNCI 115 (286)
Q Consensus 89 ~~~~lNavsF~Wdp~~ea~I~IrvNCL 115 (286)
..+.-+++.+.|+|..+.-...++.+-
T Consensus 11 ~~~~~~si~v~W~~p~~~~~~Y~i~~~ 37 (90)
T d1fnha2 11 TDATETTITISWRTKTETITGFQVDAV 37 (90)
T ss_dssp EEECSSEEEEEEECCSSCCCCEEEEEE
T ss_pred EEecCCEEEEEEECCCCCCceeEEEEE
Confidence 345678899999976543233344444
No 10
>d1kt7a_ b.60.1.1 (A:) Retinol binding protein {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.78 E-value=39 Score=24.90 Aligned_cols=16 Identities=25% Similarity=0.653 Sum_probs=12.4
Q ss_pred cceeeeeeecceeeccc
Q psy5929 237 AISKERMVWGRWHEVED 253 (286)
Q Consensus 237 ~~~~~~~~~~~~~~~~~ 253 (286)
-+.++|+. |+|+|+.-
T Consensus 14 nFDl~kf~-G~WYeia~ 29 (175)
T d1kt7a_ 14 NFDKARFA-GTWYAMAK 29 (175)
T ss_dssp TCCHHHHC-EEEEEEEE
T ss_pred CCCHHHcC-EEhheEEE
Confidence 35678888 99999853
Done!