RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy5929
         (286 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 38.5 bits (89), Expect = 0.002
 Identities = 40/231 (17%), Positives = 68/231 (29%), Gaps = 61/231 (26%)

Query: 62   VWRAAHPGHRILEVDLPLSYG--IHDVLQDSATVNSVQFNWDPNKETGVYIKVNCISTEF 119
            VW  A       +     +YG  I D++ ++    ++ F      E G  I+ N  +  F
Sbjct: 1645 VWNRA-------DNHFKDTYGFSILDIVINNPVNLTIHFG----GEKGKRIRENYSAMIF 1693

Query: 120  TPKKHGGEKGVPFRIQVDTFVQDTTHRH----LHS-ASCQVKVFKVSFLHKTSHNKIM-- 172
                 G  K      +++      T R     L +    Q  +  +      +  + +  
Sbjct: 1694 ETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEK----AAFEDLKS 1749

Query: 173  --TLPNLAFLLGHSL-----LWAWLLLSRETVTVCS----SFWNFCHVV------VQFEP 215
               +P  A   GHSL     L                   S  +   VV      +Q   
Sbjct: 1750 KGLIPADATFAGHSLGEYAAL------------ASLADVMSIESLVEVVFYRGMTMQVAV 1797

Query: 216  EIQCVIEVGQIRKQLQFRTTTAISKERMVWGRWHEVEDLAVAVVGNLSGDF 266
                  E+G+    +      AI+  R+      E     V  VG  +G  
Sbjct: 1798 PRD---ELGRSNYGM-----IAINPGRVAASFSQEALQYVVERVGKRTGWL 1840


>2yzc_A Uricase; oxidoreductase, allantoate; HET: 1AL; 1.88A {Arthrobacter
           globiformis} SCOP: d.96.1.4 d.96.1.4 PDB: 2yzb_A*
           2yzd_A* 2yze_A 1vax_A 1vay_A*
          Length = 302

 Score = 30.2 bits (68), Expect = 0.71
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)

Query: 246 GRWHEVEDLAVAVVGNLSGDFDDNFTEG 273
              HE++DL V     L GDF+   T G
Sbjct: 34  TARHEIQDLNVTSQ--LRGDFEAAHTAG 59


>3l8w_A Uricase, urate oxidase; oxidoreductase, URIC acid degradation,
           xanthine, inhibition aspergillus flavus, peroxisome,
           purine metabolism; HET: XAN 4PO; 1.00A {Aspergillus
           flavus} PDB: 3l9g_A* 3lbg_A* 3ld4_A* 3bk8_A* 1r4s_A*
           1r51_A* 1r56_A 1r4u_A* 1ws2_A* 1ws3_A 1xt4_A* 1xxj_A*
           1xy3_A* 2fub_A* 2fxl_A* 3bjp_A* 1wrr_A* 3gko_A* 3p9o_A
           2ic0_A* ...
          Length = 296

 Score = 27.5 bits (61), Expect = 4.9
 Identities = 6/26 (23%), Positives = 14/26 (53%), Gaps = 2/26 (7%)

Query: 248 WHEVEDLAVAVVGNLSGDFDDNFTEG 273
              V ++ V V+  L G+ + ++T+ 
Sbjct: 27  VQTVYEMTVCVL--LEGEIETSYTKA 50


>3sxx_A Peroxisomal primary amine oxidase; oxidoreductase, peroxisome; HET:
           GOL; 1.27A {Pichia angusta} PDB: 3sx1_A* 3t0u_A 3n9h_A*
           3nbj_A* 3nbb_A* 2oqe_C* 2oov_C* 2oqe_A* 2oov_A* 1ekm_A
           1a2v_A*
          Length = 692

 Score = 27.2 bits (59), Expect = 6.9
 Identities = 23/151 (15%), Positives = 40/151 (26%), Gaps = 13/151 (8%)

Query: 11  KSKSDLTYLNQGQ-SYELKLKQDCGVKCLLMSVIRVSFHDRRLQYTEREQMCVWRAAHPG 69
           K   D+     G  +  L L  DC      +      F DR       +          G
Sbjct: 315 KHALDIGEYGAGYMTNPLSLGCDCKGVIHYLDA---HFSDRAGDPITVKNAVCIHEEDDG 371

Query: 70  ----HRILEVDLPLSYGIHDVLQDSATVNSV-----QFNWDPNKETGVYIKVNCISTEFT 120
               H     +   S          + + +         W   ++  + + +       T
Sbjct: 372 LLFKHSDFRDNFATSLVTRATKLVVSQIFTAANYEYCLYWVFMQDGAIRLDIRLTGILNT 431

Query: 121 PKKHGGEKGVPFRIQVDTFVQDTTHRHLHSA 151
                 E+  P+  +V   V    H+HL S 
Sbjct: 432 YILGDDEEAGPWGTRVYPNVNAHNHQHLFSL 462


>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1,
           RAB gtpases, APPL1, endocytic PATH golgi complex,
           hydrolase-protein binding complex; 2.30A {Homo sapiens}
           PDB: 2qv2_A
          Length = 366

 Score = 27.2 bits (60), Expect = 7.2
 Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 5/32 (15%)

Query: 160 VSFLHK----TSHNKIMTLPNLAFLLGHSLLW 187
           ++FL +    + +N  +    +A L    LL 
Sbjct: 305 MAFLRELLKFSEYNS-VNANMIATLFTSLLLR 335


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.322    0.135    0.424 

Gapped
Lambda     K      H
   0.267   0.0715    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,313,783
Number of extensions: 240757
Number of successful extensions: 618
Number of sequences better than 10.0: 1
Number of HSP's gapped: 618
Number of HSP's successfully gapped: 10
Length of query: 286
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 193
Effective length of database: 4,105,140
Effective search space: 792292020
Effective search space used: 792292020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.8 bits)