RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5929
         (286 letters)



>d1q32a1 d.136.1.3 (A:79-293) Tyrosyl-DNA phosphodiesterase TDP1
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 215

 Score = 26.7 bits (59), Expect = 3.1
 Identities = 10/98 (10%), Positives = 31/98 (31%), Gaps = 20/98 (20%)

Query: 83  IHDVLQDSATVNSVQFN--WDPNKETGVYIKVNCISTEFTPKKHGGEKGVPFRIQVDTFV 140
           + D+        S+ F+  ++          ++ +  +F        + +    Q  T +
Sbjct: 27  LKDIFGTETLKRSILFSFQYE----------LDFLLRQFHQNV----ENITIVGQKGTIM 72

Query: 141 QDTTHRHLHSASCQVKVFKVSFLHK----TSHNKIMTL 174
                    + +  +K  K+  +      + H K++  
Sbjct: 73  PIEARAMDATLAVILKKVKLIEITMPPFASHHTKLIIN 110


>d1twfb_ e.29.1.1 (B:) RBP2 {Baker's yeast (Saccharomyces cerevisiae)
            [TaxId: 4932]}
          Length = 1207

 Score = 26.8 bits (58), Expect = 3.8
 Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 64   RAAHPGHRI--LEVDLPLSYGIHDVLQDSATVNSVQFNWDPNKETGVY 109
            R+   G R   +E D  +++G    L++     S  F        G+ 
Sbjct: 1105 RSRDGGLRFGEMERDCMIAHGAASFLKERLMEASDAFRVHICGICGLM 1152


>d1so9a_ b.146.1.1 (A:) Cytochrome C oxidase assembly protein CtaG
           {Rhizobium meliloti (Sinorhizobium meliloti) [TaxId:
           382]}
          Length = 131

 Score = 26.0 bits (57), Expect = 3.8
 Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 1/65 (1%)

Query: 87  LQDSATVNSVQFNWDPNKETGVYIKVNCISTEFTPKKHGGEKGVPFRIQVD-TFVQDTTH 145
           L  + T     FN  P      + KV C     T  + G E  +P    VD   V+    
Sbjct: 53  LASTPTTGQATFNVTPMAAGAYFNKVQCFCFTETTLEPGEEMEMPVVFFVDPEIVKPVET 112

Query: 146 RHLHS 150
           + + +
Sbjct: 113 QGIKT 117


>d1smyc_ e.29.1.1 (C:) RNA-polymerase beta {Thermus thermophilus
            [TaxId: 274]}
          Length = 1119

 Score = 26.7 bits (58), Expect = 4.0
 Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 2/34 (5%)

Query: 64   RAAHPGHRI--LEVDLPLSYGIHDVLQDSATVNS 95
            +A   G R   +EV    +YG    LQ+  T+ S
Sbjct: 1024 KAQFGGQRFGEMEVWALEAYGAAHTLQEMLTLKS 1057


>d2ibaa1 d.96.1.4 (A:1-136) Urate oxidase (uricase) {Aspergillus
           flavus [TaxId: 5059]}
          Length = 136

 Score = 25.5 bits (56), Expect = 4.5
 Identities = 6/28 (21%), Positives = 14/28 (50%), Gaps = 2/28 (7%)

Query: 246 GRWHEVEDLAVAVVGNLSGDFDDNFTEG 273
                V ++ V V+  L G+ + ++T+ 
Sbjct: 24  TGVQTVYEMTVCVL--LEGEIETSYTKA 49


>d2be3a1 d.218.1.8 (A:1-203) Putative GTP pyrophosphokinase SP1097
           {Streptococcus pneumoniae [TaxId: 1313]}
          Length = 203

 Score = 25.5 bits (55), Expect = 6.4
 Identities = 15/84 (17%), Positives = 33/84 (39%), Gaps = 2/84 (2%)

Query: 69  GHRILEVDLPLSYGIHDVLQDSATVNSVQF-NWDPNKETGVYIKVNCISTEFTPKKHGGE 127
           G R++   +     + D+L     +  +Q  ++  +++   Y   + +  E+T     G 
Sbjct: 75  GLRVMVQFVDDVKEVVDILHKRQDMRIIQERDYITHRKASGYRSYHVVV-EYTVDTINGA 133

Query: 128 KGVPFRIQVDTFVQDTTHRHLHSA 151
           K +   IQ+ T   +      HS 
Sbjct: 134 KTILAEIQIRTLAMNFWATIEHSL 157


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.135    0.424 

Gapped
Lambda     K      H
   0.267   0.0676    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,077,875
Number of extensions: 47744
Number of successful extensions: 126
Number of sequences better than 10.0: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 8
Length of query: 286
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 202
Effective length of database: 1,254,276
Effective search space: 253363752
Effective search space used: 253363752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (23.9 bits)