Query psy593
Match_columns 70
No_of_seqs 108 out of 592
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 22:03:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy593.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/593hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5023 Tubulin [Cytoskeleton] 99.5 1.8E-14 3.9E-19 108.1 1.5 46 1-46 391-436 (443)
2 PTZ00010 tubulin beta chain; P 99.4 7.9E-14 1.7E-18 104.8 3.0 44 1-44 388-431 (445)
3 PLN00220 tubulin beta chain; P 99.4 1.4E-13 3E-18 103.4 3.3 42 1-42 388-429 (447)
4 PLN00221 tubulin alpha chain; 99.4 3.1E-13 6.7E-18 101.9 2.9 42 1-42 398-439 (450)
5 PTZ00335 tubulin alpha chain; 99.3 3.6E-13 7.8E-18 101.5 2.6 42 1-42 398-439 (448)
6 KOG1375|consensus 99.3 3.7E-13 8.1E-18 100.0 2.3 44 1-44 312-356 (369)
7 cd02186 alpha_tubulin The tubu 99.3 9.1E-13 2E-17 98.8 1.7 37 1-37 397-433 (434)
8 cd02190 epsilon_tubulin The tu 99.3 1.2E-12 2.5E-17 96.8 2.0 38 1-38 342-379 (379)
9 cd02187 beta_tubulin The tubul 99.3 1.4E-12 3.1E-17 97.4 2.2 38 1-38 387-424 (425)
10 cd06059 Tubulin The tubulin su 99.2 4.6E-12 1E-16 93.0 1.5 37 1-37 346-382 (382)
11 PTZ00387 epsilon tubulin; Prov 99.2 8.7E-12 1.9E-16 94.6 2.5 40 1-41 413-452 (465)
12 PLN00222 tubulin gamma chain; 99.2 1.3E-11 2.9E-16 93.2 2.8 41 1-41 400-444 (454)
13 cd02189 delta_tubulin The tubu 99.2 9.8E-12 2.1E-16 93.5 2.0 36 1-36 410-445 (446)
14 cd02188 gamma_tubulin Gamma-tu 99.1 1.4E-11 3E-16 92.6 1.5 35 1-35 394-431 (431)
15 KOG1376|consensus 98.5 2.9E-08 6.3E-13 74.6 1.4 32 1-32 375-406 (407)
16 KOG1374|consensus 98.4 7.2E-08 1.6E-12 73.0 1.1 40 1-40 399-441 (448)
17 cd06060 misato Human Misato sh 75.6 2.2 4.7E-05 33.3 2.1 29 8-36 464-492 (493)
18 COG1528 Ftn Ferritin-like prot 52.6 2.1 4.6E-05 29.3 -1.6 30 4-39 116-145 (167)
19 COG3105 Uncharacterized protei 40.8 58 0.0013 21.7 3.8 27 18-44 58-84 (138)
20 PF13174 TPR_6: Tetratricopept 39.7 28 0.00061 15.6 1.7 19 18-36 13-31 (33)
21 PF05906 DUF865: Herpesvirus-7 29.4 23 0.00051 18.1 0.4 12 59-70 14-25 (35)
22 PF04695 Pex14_N: Peroxisomal 26.7 14 0.0003 23.8 -0.9 27 3-32 25-51 (136)
23 PF12910 RelB_N: Antitoxin of 24.8 87 0.0019 16.5 2.2 20 18-37 3-22 (46)
No 1
>COG5023 Tubulin [Cytoskeleton]
Probab=99.45 E-value=1.8e-14 Score=108.10 Aligned_cols=46 Identities=50% Similarity=0.828 Sum_probs=42.6
Q ss_pred CccccccccccccCCCCcccHHHHHHhHHHHHHHHHHHHHhccccc
Q psy593 1 MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASIEDT 46 (70)
Q Consensus 1 LykrkAfLh~Y~~egme~~eF~ea~e~l~~li~eY~~~~~~~~~~~ 46 (70)
||+||||||||+++||++++|+||+++|++|+.+|+++++++.+++
T Consensus 391 mf~krAFlhwY~~egmee~EFsEare~~~~L~~eY~~~~~~s~~~~ 436 (443)
T COG5023 391 MFKKRAFLHWYVGEGMEEGEFSEAREDVADLEEEYEAAEQDSYLDD 436 (443)
T ss_pred HHHhhHHHHHHhhccCcccchhhHHHHHHHHHHHHHHhccccccch
Confidence 6899999999999999999999999999999999999998875543
No 2
>PTZ00010 tubulin beta chain; Provisional
Probab=99.42 E-value=7.9e-14 Score=104.82 Aligned_cols=44 Identities=73% Similarity=1.243 Sum_probs=40.7
Q ss_pred CccccccccccccCCCCcccHHHHHHhHHHHHHHHHHHHHhccc
Q psy593 1 MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASIE 44 (70)
Q Consensus 1 LykrkAfLh~Y~~egme~~eF~ea~e~l~~li~eY~~~~~~~~~ 44 (70)
||+||||||||+++||++++|.||+++|++|+++|+.+.....+
T Consensus 388 m~~rrAflh~Y~~eGmee~ef~EA~~~l~~li~~Y~~~~~~~~~ 431 (445)
T PTZ00010 388 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATVE 431 (445)
T ss_pred HHhcCchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 78999999999999999999999999999999999998776533
No 3
>PLN00220 tubulin beta chain; Provisional
Probab=99.40 E-value=1.4e-13 Score=103.41 Aligned_cols=42 Identities=74% Similarity=1.249 Sum_probs=39.5
Q ss_pred CccccccccccccCCCCcccHHHHHHhHHHHHHHHHHHHHhc
Q psy593 1 MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEAS 42 (70)
Q Consensus 1 LykrkAfLh~Y~~egme~~eF~ea~e~l~~li~eY~~~~~~~ 42 (70)
||+||||||||+++||++++|.||+++|++|+++|++++...
T Consensus 388 m~~rkAflh~Y~~~Gmee~ef~ea~~~l~~li~~Y~~~~~~~ 429 (447)
T PLN00220 388 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 429 (447)
T ss_pred HHhcCcchhhhcccCCchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 789999999999999999999999999999999999987654
No 4
>PLN00221 tubulin alpha chain; Provisional
Probab=99.36 E-value=3.1e-13 Score=101.92 Aligned_cols=42 Identities=40% Similarity=0.772 Sum_probs=39.8
Q ss_pred CccccccccccccCCCCcccHHHHHHhHHHHHHHHHHHHHhc
Q psy593 1 MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEAS 42 (70)
Q Consensus 1 LykrkAfLh~Y~~egme~~eF~ea~e~l~~li~eY~~~~~~~ 42 (70)
||+||||||||+++||++++|.||+++|++||++|+++++..
T Consensus 398 mf~rkAflh~Y~~eGmee~eF~EA~~~l~~li~~Y~~~~~~~ 439 (450)
T PLN00221 398 MYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAES 439 (450)
T ss_pred HHhhcchhhhhhccCCchHHHHHHHHHHHHHHHHHHHHhccc
Confidence 789999999999999999999999999999999999987654
No 5
>PTZ00335 tubulin alpha chain; Provisional
Probab=99.35 E-value=3.6e-13 Score=101.51 Aligned_cols=42 Identities=40% Similarity=0.772 Sum_probs=39.3
Q ss_pred CccccccccccccCCCCcccHHHHHHhHHHHHHHHHHHHHhc
Q psy593 1 MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEAS 42 (70)
Q Consensus 1 LykrkAfLh~Y~~egme~~eF~ea~e~l~~li~eY~~~~~~~ 42 (70)
||+||||||||+++||++++|.||+++|++||++|+++++..
T Consensus 398 mf~rkAflh~Y~~eGmee~eF~EA~~~l~~li~~Y~~~~~~~ 439 (448)
T PTZ00335 398 MYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAES 439 (448)
T ss_pred HHhhcchhhhhhccCCchHHHHHHHHHHHHHHHHHHHHhccc
Confidence 789999999999999999999999999999999999986543
No 6
>KOG1375|consensus
Probab=99.34 E-value=3.7e-13 Score=100.01 Aligned_cols=44 Identities=73% Similarity=1.214 Sum_probs=40.0
Q ss_pred CccccccccccccCCCCcccHHHHHHhHHHHHHHHHHH-HHhccc
Q psy593 1 MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQY-QEASIE 44 (70)
Q Consensus 1 LykrkAfLh~Y~~egme~~eF~ea~e~l~~li~eY~~~-~~~~~~ 44 (70)
||+||||||||+++||++++|+||..++++||.+|+++ +.+..+
T Consensus 312 mfrrkAflhwy~~egMde~EFtEAes~~ndLi~eyqQy~~~~~~~ 356 (369)
T KOG1375|consen 312 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQQDATAE 356 (369)
T ss_pred HHHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhhcccc
Confidence 68999999999999999999999999999999999999 554433
No 7
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=99.29 E-value=9.1e-13 Score=98.78 Aligned_cols=37 Identities=43% Similarity=0.879 Sum_probs=35.9
Q ss_pred CccccccccccccCCCCcccHHHHHHhHHHHHHHHHH
Q psy593 1 MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQ 37 (70)
Q Consensus 1 LykrkAfLh~Y~~egme~~eF~ea~e~l~~li~eY~~ 37 (70)
||+||||||||+++||++++|.||+++|++|+++|++
T Consensus 397 mf~rkAflh~Y~~~Gmee~ef~ea~~~l~~li~~Y~~ 433 (434)
T cd02186 397 MYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 433 (434)
T ss_pred HHhhcchhhhhcCcCCchHHHHHHHHHHHHHHHHHhh
Confidence 7899999999999999999999999999999999986
No 8
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=99.28 E-value=1.2e-12 Score=96.80 Aligned_cols=38 Identities=42% Similarity=0.700 Sum_probs=36.2
Q ss_pred CccccccccccccCCCCcccHHHHHHhHHHHHHHHHHH
Q psy593 1 MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQY 38 (70)
Q Consensus 1 LykrkAfLh~Y~~egme~~eF~ea~e~l~~li~eY~~~ 38 (70)
||+||||||||+++||++++|++|+++|++||++|+++
T Consensus 342 mf~krAflh~Y~~eG~ee~ef~ea~~~l~~li~~Y~~l 379 (379)
T cd02190 342 LYKRKAHLHHYTQVGMEQGDFTEALESISNLIDEYDYL 379 (379)
T ss_pred HHhcccchhhhhCCCCcHHHHHHHHHHHHHHHHHHHhC
Confidence 78999999999999999999999999999999999863
No 9
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=99.28 E-value=1.4e-12 Score=97.45 Aligned_cols=38 Identities=76% Similarity=1.299 Sum_probs=36.7
Q ss_pred CccccccccccccCCCCcccHHHHHHhHHHHHHHHHHH
Q psy593 1 MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQY 38 (70)
Q Consensus 1 LykrkAfLh~Y~~egme~~eF~ea~e~l~~li~eY~~~ 38 (70)
||+||||||||+++||++++|.||+++|++||++|+++
T Consensus 387 m~~kkAflh~Y~~~G~ee~ef~Ea~~~l~~li~~Y~~~ 424 (425)
T cd02187 387 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 424 (425)
T ss_pred HHhcCcchhhhhccCCchHHHHHHHHHHHHHHHHHHhh
Confidence 78999999999999999999999999999999999975
No 10
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=99.20 E-value=4.6e-12 Score=93.04 Aligned_cols=37 Identities=62% Similarity=1.128 Sum_probs=35.4
Q ss_pred CccccccccccccCCCCcccHHHHHHhHHHHHHHHHH
Q psy593 1 MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQ 37 (70)
Q Consensus 1 LykrkAfLh~Y~~egme~~eF~ea~e~l~~li~eY~~ 37 (70)
||+||||||||+++||++++|.||+++|++|+++|++
T Consensus 346 m~~~rAflh~Y~~~G~ee~ef~ea~~~l~~li~~Y~~ 382 (382)
T cd06059 346 LYKRKAFLHWYLGEGMDEMEFTEAESSLEDLIQSYQE 382 (382)
T ss_pred HHhhCcchhhhcCcCCchHHHHHHHHHHHHHHHHhcC
Confidence 6899999999999999999999999999999999973
No 11
>PTZ00387 epsilon tubulin; Provisional
Probab=99.18 E-value=8.7e-12 Score=94.61 Aligned_cols=40 Identities=33% Similarity=0.598 Sum_probs=37.8
Q ss_pred CccccccccccccCCCCcccHHHHHHhHHHHHHHHHHHHHh
Q psy593 1 MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEA 41 (70)
Q Consensus 1 LykrkAfLh~Y~~egme~~eF~ea~e~l~~li~eY~~~~~~ 41 (70)
||+||||||||+ +||++++|++|+++|++|+++|++++.+
T Consensus 413 mf~rkAflH~Y~-egmee~eF~ea~~~l~~li~~Y~~~~~~ 452 (465)
T PTZ00387 413 LYKRKSHVHHYT-EYLEQAYFDETLETIQNLIDDYAYLQTA 452 (465)
T ss_pred HHhhcchHHhhh-cccchHHHHHHHHHHHHHHHHHHHHhhc
Confidence 789999999999 8999999999999999999999999744
No 12
>PLN00222 tubulin gamma chain; Provisional
Probab=99.17 E-value=1.3e-11 Score=93.23 Aligned_cols=41 Identities=32% Similarity=0.399 Sum_probs=37.8
Q ss_pred CccccccccccccCCCC----cccHHHHHHhHHHHHHHHHHHHHh
Q psy593 1 MFRRKAFLHWYTVEGMD----EFEFHEAGANVEDLICEYQQYQEA 41 (70)
Q Consensus 1 LykrkAfLh~Y~~egme----~~eF~ea~e~l~~li~eY~~~~~~ 41 (70)
||+||||||||+++||+ +++|.+|+++|++|+++|+.++.+
T Consensus 400 mf~rkAflH~Y~~~G~~~d~ee~eF~ea~~~l~~li~~Y~~~~~~ 444 (454)
T PLN00222 400 LRKKQAFLDNYRKFPMFADNDLSEFDESREIVESLVDEYKACESP 444 (454)
T ss_pred HHhhCccceeecCCCcccCcchhHHHHHHHHHHHHHHHHHHHhcc
Confidence 79999999999999993 799999999999999999998743
No 13
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=99.17 E-value=9.8e-12 Score=93.50 Aligned_cols=36 Identities=39% Similarity=0.676 Sum_probs=35.0
Q ss_pred CccccccccccccCCCCcccHHHHHHhHHHHHHHHH
Q psy593 1 MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQ 36 (70)
Q Consensus 1 LykrkAfLh~Y~~egme~~eF~ea~e~l~~li~eY~ 36 (70)
||+||||||||.++||++++|.||+++|++||++|+
T Consensus 410 mf~~rAflH~Y~~~Gmee~ef~eA~~~l~~li~~Y~ 445 (446)
T cd02189 410 MFASGAYLHQYEKYGLEEEDFLDAFATLEQIIASYK 445 (446)
T ss_pred HHhcCcchhhhhccCCcHHHHHHHHHHHHHHHHHhc
Confidence 689999999999999999999999999999999996
No 14
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=99.14 E-value=1.4e-11 Score=92.63 Aligned_cols=35 Identities=43% Similarity=0.539 Sum_probs=34.0
Q ss_pred CccccccccccccCCCC---cccHHHHHHhHHHHHHHH
Q psy593 1 MFRRKAFLHWYTVEGMD---EFEFHEAGANVEDLICEY 35 (70)
Q Consensus 1 LykrkAfLh~Y~~egme---~~eF~ea~e~l~~li~eY 35 (70)
||+||||||||+++||+ +++|.||+++|++|+++|
T Consensus 394 mf~krAflH~Y~~eGme~~~e~eF~ea~~~l~~li~~Y 431 (431)
T cd02188 394 LRKRRAFLDNYRKEDMFSDNLDEFDESREVVQSLIEEY 431 (431)
T ss_pred HHhhCchhhhccCcCccccchhHHHHHHHHHHHHHHhC
Confidence 78999999999999999 999999999999999988
No 15
>KOG1376|consensus
Probab=98.53 E-value=2.9e-08 Score=74.63 Aligned_cols=32 Identities=47% Similarity=0.896 Sum_probs=30.0
Q ss_pred CccccccccccccCCCCcccHHHHHHhHHHHH
Q psy593 1 MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLI 32 (70)
Q Consensus 1 LykrkAfLh~Y~~egme~~eF~ea~e~l~~li 32 (70)
||.||||+|||.++||++.+|.+|++.|..|.
T Consensus 375 myakrafVhwyvgegmeegef~ea~ed~a~le 406 (407)
T KOG1376|consen 375 MYAKRAFVHWYVGEGMEEGEFSEAREDLAALE 406 (407)
T ss_pred hhcchheeeeccCCCccccchhhhhhhHHhhc
Confidence 79999999999999999999999999998763
No 16
>KOG1374|consensus
Probab=98.42 E-value=7.2e-08 Score=73.01 Aligned_cols=40 Identities=30% Similarity=0.446 Sum_probs=37.4
Q ss_pred CccccccccccccCCCCcc---cHHHHHHhHHHHHHHHHHHHH
Q psy593 1 MFRRKAFLHWYTVEGMDEF---EFHEAGANVEDLICEYQQYQE 40 (70)
Q Consensus 1 LykrkAfLh~Y~~egme~~---eF~ea~e~l~~li~eY~~~~~ 40 (70)
|++|+||||.|++++++++ +|+++++.|++|+++|.++++
T Consensus 399 lrk~~AFld~y~k~~if~~~~~efdesr~ivq~lv~eY~a~~~ 441 (448)
T KOG1374|consen 399 LRKKRAFLDQYRKFDIFEDDLDEFDESREIVQQLVDEYHAAEQ 441 (448)
T ss_pred HHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHHhhcC
Confidence 5799999999999999887 999999999999999999865
No 17
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.
Probab=75.58 E-value=2.2 Score=33.32 Aligned_cols=29 Identities=24% Similarity=0.284 Sum_probs=25.5
Q ss_pred ccccccCCCCcccHHHHHHhHHHHHHHHH
Q psy593 8 LHWYTVEGMDEFEFHEAGANVEDLICEYQ 36 (70)
Q Consensus 8 Lh~Y~~egme~~eF~ea~e~l~~li~eY~ 36 (70)
++.|...|+++++|.|+.+.|.++.+.|+
T Consensus 464 ~~~~~~~g~e~de~~e~le~L~~~~~~Y~ 492 (493)
T cd06060 464 KASFFESGLEEDEYKELLEQLLDLAECYE 492 (493)
T ss_pred hhcccccccCHHHHHHHHHHHHHHHHhhc
Confidence 34677789999999999999999999886
No 18
>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism]
Probab=52.62 E-value=2.1 Score=29.29 Aligned_cols=30 Identities=17% Similarity=0.366 Sum_probs=20.1
Q ss_pred ccccccccccCCCCcccHHHHHHhHHHHHHHHHHHH
Q psy593 4 RKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQ 39 (70)
Q Consensus 4 rkAfLh~Y~~egme~~eF~ea~e~l~~li~eY~~~~ 39 (70)
.-.||+||+.+..++. ..+..|++.++.+.
T Consensus 116 T~nFLqWfv~EQ~eEe------~l~~~I~d~~~~ag 145 (167)
T COG1528 116 TFNFLQWFVAEQVEEE------KLFKTILDKLELAG 145 (167)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHcC
Confidence 4579999998886543 44556666666653
No 19
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.83 E-value=58 Score=21.74 Aligned_cols=27 Identities=15% Similarity=0.213 Sum_probs=22.3
Q ss_pred cccHHHHHHhHHHHHHHHHHHHHhccc
Q psy593 18 EFEFHEAGANVEDLICEYQQYQEASIE 44 (70)
Q Consensus 18 ~~eF~ea~e~l~~li~eY~~~~~~~~~ 44 (70)
...|.++-+-+..|+.+|+.+.+..+.
T Consensus 58 ~~HFa~sAeLlktl~~dYqklyqHmA~ 84 (138)
T COG3105 58 VKHFARSAELLKTLAQDYQKLYQHMAK 84 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467999999999999999997665444
No 20
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=39.71 E-value=28 Score=15.62 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=15.4
Q ss_pred cccHHHHHHhHHHHHHHHH
Q psy593 18 EFEFHEAGANVEDLICEYQ 36 (70)
Q Consensus 18 ~~eF~ea~e~l~~li~eY~ 36 (70)
..++.+|...++.++..|.
T Consensus 13 ~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 13 LGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HCHHHHHHHHHHHHHHHST
T ss_pred ccCHHHHHHHHHHHHHHCc
Confidence 3568899999999988774
No 21
>PF05906 DUF865: Herpesvirus-7 repeat of unknown function (DUF865)
Probab=29.38 E-value=23 Score=18.08 Aligned_cols=12 Identities=58% Similarity=0.562 Sum_probs=8.4
Q ss_pred CCCCCCCCCCCC
Q psy593 59 HRIKPEKPVKTT 70 (70)
Q Consensus 59 ~~~~~~~~~~~~ 70 (70)
|++---||||||
T Consensus 14 hnpltfkpvktt 25 (35)
T PF05906_consen 14 HNPLTFKPVKTT 25 (35)
T ss_pred CCccceeeeecc
Confidence 555556888886
No 22
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=26.74 E-value=14 Score=23.84 Aligned_cols=27 Identities=30% Similarity=0.356 Sum_probs=17.4
Q ss_pred cccccccccccCCCCcccHHHHHHhHHHHH
Q psy593 3 RRKAFLHWYTVEGMDEFEFHEAGANVEDLI 32 (70)
Q Consensus 3 krkAfLh~Y~~egme~~eF~ea~e~l~~li 32 (70)
+|.+||. +.|+..+|+++|+....+-.
T Consensus 25 ~k~~FL~---sKGLt~~EI~~al~~a~~~~ 51 (136)
T PF04695_consen 25 KKIAFLE---SKGLTEEEIDEALGRAGSPP 51 (136)
T ss_dssp HHHHHHH---HCT--HHHHHHHHHHHT--S
T ss_pred HHHHHHH---cCCCCHHHHHHHHHhcCCcc
Confidence 4556664 57999999999998877654
No 23
>PF12910 RelB_N: Antitoxin of toxin-antitoxin stability system N-terminal; PDB: 3K6Q_C.
Probab=24.79 E-value=87 Score=16.47 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=15.6
Q ss_pred cccHHHHHHhHHHHHHHHHH
Q psy593 18 EFEFHEAGANVEDLICEYQQ 37 (70)
Q Consensus 18 ~~eF~ea~e~l~~li~eY~~ 37 (70)
.-.|.+||.++..|++.-..
T Consensus 3 ~~~~~eAR~~ls~l~d~v~~ 22 (46)
T PF12910_consen 3 TVNYSEARNNLSKLIDRVVN 22 (46)
T ss_dssp EEEHHHHHHTHHHHHHHHHH
T ss_pred EEeHHHHHHhHHHHHHHHHc
Confidence 34589999999999886544
Done!