Query psy593
Match_columns 70
No_of_seqs 108 out of 592
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 22:03:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy593.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/593hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ryc_B Tubulin beta chain; alp 99.6 2.8E-16 9.5E-21 117.6 2.5 45 1-45 388-432 (445)
2 3ryc_A Tubulin alpha chain; al 99.5 1.9E-15 6.5E-20 113.2 2.0 43 1-43 398-440 (451)
3 2bto_A Tubulin btuba; bacteria 99.4 4.4E-14 1.5E-18 105.9 1.6 42 1-42 393-434 (473)
4 2btq_B Tubulin btubb; structur 99.4 6E-14 2E-18 103.9 1.8 38 1-38 388-425 (426)
5 3cb2_A Gamma-1-tubulin, tubuli 99.3 2.3E-13 7.9E-18 102.2 0.6 42 1-42 398-442 (475)
6 2e4h_B Tubulin alpha-ubiquitou 97.5 6.3E-05 2.2E-09 38.7 2.8 24 19-42 1-24 (36)
7 2plg_A TLL0839 protein; hypoth 15.7 1.4E+02 0.0048 19.2 3.1 28 13-40 123-150 (163)
8 3t9o_A DGC, diguanylate cyclas 12.8 1.6E+02 0.0056 17.6 2.7 20 19-38 105-124 (135)
9 4e17_B Catenin alpha-1; four h 12.3 1.5E+02 0.005 15.1 2.0 13 24-36 24-36 (40)
10 2w84_A Peroxisomal membrane pr 12.3 39 0.0013 19.2 -0.3 22 4-28 38-59 (70)
No 1
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3ut5_B* 4eb6_B* 4f6r_B* 4f61_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 4aqv_B* 4aqw_B* 4atu_A* ...
Probab=99.59 E-value=2.8e-16 Score=117.55 Aligned_cols=45 Identities=69% Similarity=1.200 Sum_probs=42.4
Q ss_pred CccccccccccccCCCCcccHHHHHHhHHHHHHHHHHHHHhcccc
Q psy593 1 MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASIED 45 (70)
Q Consensus 1 LykrkAfLh~Y~~egme~~eF~ea~e~l~~li~eY~~~~~~~~~~ 45 (70)
||+||||||||+++||++++|.||+++|.+|+.+|++++.++.++
T Consensus 388 m~~krAFvHwY~~eGmee~eF~EA~e~l~~L~~eY~~~~~~~~~~ 432 (445)
T 3ryc_B 388 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADE 432 (445)
T ss_dssp HHTTTTTTHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHCCTTC
T ss_pred hhhcccchhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 689999999999999999999999999999999999999887654
No 2
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3ut5_A* 4eb6_A* 4f61_A* 4f6r_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* ...
Probab=99.52 E-value=1.9e-15 Score=113.19 Aligned_cols=43 Identities=40% Similarity=0.760 Sum_probs=39.5
Q ss_pred CccccccccccccCCCCcccHHHHHHhHHHHHHHHHHHHHhcc
Q psy593 1 MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASI 43 (70)
Q Consensus 1 LykrkAfLh~Y~~egme~~eF~ea~e~l~~li~eY~~~~~~~~ 43 (70)
||+||||||||+++||++++|.||+++|.+|+++|++++.++.
T Consensus 398 m~~krAFvHwY~~eGmee~eF~EA~e~l~~L~~eY~~~~~~~~ 440 (451)
T 3ryc_A 398 MYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSV 440 (451)
T ss_dssp HHTTTTTTHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred HhhcceeHhhhcCCccchhhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 6899999999999999999999999999999999999987653
No 3
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A*
Probab=99.40 E-value=4.4e-14 Score=105.92 Aligned_cols=42 Identities=36% Similarity=0.671 Sum_probs=38.5
Q ss_pred CccccccccccccCCCCcccHHHHHHhHHHHHHHHHHHHHhc
Q psy593 1 MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEAS 42 (70)
Q Consensus 1 LykrkAfLh~Y~~egme~~eF~ea~e~l~~li~eY~~~~~~~ 42 (70)
||+||||||||+++||++++|.||+++|.+|+++|++++...
T Consensus 393 m~~rrAflH~Y~~eGmee~eF~EA~e~l~~l~~eY~~~~~~~ 434 (473)
T 2bto_A 393 LWQRKAFANWYLNEGMSEEQINVLRASAQELVQSYQVAEESG 434 (473)
T ss_dssp HHTTTTTHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HhhhcchhHHhhccCCcHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 689999999999999999999999999999999999987654
No 4
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii}
Probab=99.39 E-value=6e-14 Score=103.85 Aligned_cols=38 Identities=26% Similarity=0.547 Sum_probs=36.7
Q ss_pred CccccccccccccCCCCcccHHHHHHhHHHHHHHHHHH
Q psy593 1 MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQY 38 (70)
Q Consensus 1 LykrkAfLh~Y~~egme~~eF~ea~e~l~~li~eY~~~ 38 (70)
||+||||||||+++||++++|.||+++|.+|+++|+++
T Consensus 388 m~~rrAflh~Y~~eGmee~eF~ea~~~l~~l~~eY~~~ 425 (426)
T 2btq_B 388 MFDNHAYTHWYENAGVSRDMMAKARNQIATLAQSYRDA 425 (426)
T ss_dssp HHHTTSSHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcccchhhhccCCccHHHHHHHHHHHHHHHHHHHhc
Confidence 68999999999999999999999999999999999986
No 5
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A*
Probab=99.31 E-value=2.3e-13 Score=102.21 Aligned_cols=42 Identities=29% Similarity=0.380 Sum_probs=38.5
Q ss_pred CccccccccccccCCCCc---ccHHHHHHhHHHHHHHHHHHHHhc
Q psy593 1 MFRRKAFLHWYTVEGMDE---FEFHEAGANVEDLICEYQQYQEAS 42 (70)
Q Consensus 1 LykrkAfLh~Y~~egme~---~eF~ea~e~l~~li~eY~~~~~~~ 42 (70)
||+||||||||+++||++ ++|.||+++|.+|+++|++++...
T Consensus 398 m~~rrAflHwY~~eGm~e~~~~eF~EA~~~l~~li~eY~~~~~~~ 442 (475)
T 3cb2_A 398 LRKREAFLEQFRKEDMFKDNFDEMDTSREIVQQLIDEYHAATRPD 442 (475)
T ss_dssp HHHTTCSCHHHHTSGGGSSCCHHHHHHHHHHHHHHHHHHHTTSGG
T ss_pred HhhcccceeeecccCccccchhHHHHHHHHHHHHHHHHHHHhhcc
Confidence 689999999999999986 999999999999999999986543
No 6
>2e4h_B Tubulin alpha-ubiquitous chain; cytoskeleton, CAP-Gly, complex structure, solution structure, CLIP, structural protein; NMR {Homo sapiens}
Probab=97.53 E-value=6.3e-05 Score=38.70 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=21.3
Q ss_pred ccHHHHHHhHHHHHHHHHHHHHhc
Q psy593 19 FEFHEAGANVEDLICEYQQYQEAS 42 (70)
Q Consensus 19 ~eF~ea~e~l~~li~eY~~~~~~~ 42 (70)
++|.+|+++|.+|+.+|+++..++
T Consensus 1 ~EFsEA~edl~~L~~dYee~~~~~ 24 (36)
T 2e4h_B 1 GEFSEAREDMAALEKDYEEVGVDS 24 (36)
T ss_pred CcchHHHHHHHHHHHHHHHHhccc
Confidence 479999999999999999987654
No 7
>2plg_A TLL0839 protein; hypothetical, uncharacterized, DUF1821, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 2.60A {Synechococcus elongatus} SCOP: d.198.1.2
Probab=15.69 E-value=1.4e+02 Score=19.22 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=24.3
Q ss_pred cCCCCcccHHHHHHhHHHHHHHHHHHHH
Q psy593 13 VEGMDEFEFHEAGANVEDLICEYQQYQE 40 (70)
Q Consensus 13 ~egme~~eF~ea~e~l~~li~eY~~~~~ 40 (70)
-.+++.++|..|...|..+.++|...-.
T Consensus 123 ls~Ld~~E~~~aIt~V~~lAD~~Dd~L~ 150 (163)
T 2plg_A 123 LGGITAGEISRLITIVATLADDYDDALR 150 (163)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688999999999999999999997544
No 8
>3t9o_A DGC, diguanylate cyclase YDEH; putative zinc sensor, CZB domain, metal protein; 2.20A {Escherichia coli}
Probab=12.81 E-value=1.6e+02 Score=17.63 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=14.0
Q ss_pred ccHHHHHHhHHHHHHHHHHH
Q psy593 19 FEFHEAGANVEDLICEYQQY 38 (70)
Q Consensus 19 ~eF~ea~e~l~~li~eY~~~ 38 (70)
+.|.+|...+-..+++|+..
T Consensus 105 ~~~e~as~~~~~~ld~~k~~ 124 (135)
T 3t9o_A 105 DAFQEGLLSFTAALTDYKIY 124 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777754
No 9
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus}
Probab=12.31 E-value=1.5e+02 Score=15.08 Aligned_cols=13 Identities=31% Similarity=0.618 Sum_probs=9.5
Q ss_pred HHHhHHHHHHHHH
Q psy593 24 AGANVEDLICEYQ 36 (70)
Q Consensus 24 a~e~l~~li~eY~ 36 (70)
.+..|++|..+|.
T Consensus 24 vrqALQdLlseY~ 36 (40)
T 4e17_B 24 VRQALQDLLSEYM 36 (40)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 4667788888875
No 10
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=12.27 E-value=39 Score=19.23 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=14.7
Q ss_pred ccccccccccCCCCcccHHHHHHhH
Q psy593 4 RKAFLHWYTVEGMDEFEFHEAGANV 28 (70)
Q Consensus 4 rkAfLh~Y~~egme~~eF~ea~e~l 28 (70)
|.+||. +.|+..+|+++|....
T Consensus 38 K~~FL~---sKGLt~eEI~~Al~ra 59 (70)
T 2w84_A 38 RRAFLK---KKGLTDEEIDMAFQQS 59 (70)
T ss_dssp HHHHHH---HTTCCHHHHHHHHHHH
T ss_pred HHHHHH---HcCCCHHHHHHHHHHc
Confidence 445543 4688888888877653
Done!