RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy593
         (70 letters)



>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa)
           [TaxId: 9823]}
          Length = 184

 Score = 78.1 bits (192), Expect = 1e-20
 Identities = 30/40 (75%), Positives = 34/40 (85%)

Query: 1   MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQE 40
           MFRRKAFLHWYT EGMDE EF EA +N+ DL+ EYQQYQ+
Sbjct: 145 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD 184


>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter
           dejongeii [TaxId: 48465]}
          Length = 180

 Score = 73.1 bits (179), Expect = 9e-19
 Identities = 15/40 (37%), Positives = 26/40 (65%)

Query: 1   MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQE 40
           +++RKAF +WY  EGM E + +   A+ ++L+  YQ  +E
Sbjct: 141 LWQRKAFANWYLNEGMSEEQINVLRASAQELVQSYQVAEE 180


>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus
           scrofa) [TaxId: 9823]}
          Length = 195

 Score = 70.4 bits (172), Expect = 1e-17
 Identities = 17/43 (39%), Positives = 28/43 (65%)

Query: 1   MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASI 43
           M+ ++AF+HWY  EGM+E EF EA  ++  L  +Y++    S+
Sbjct: 153 MYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSV 195


>d1nd9a_ a.6.1.6 (A:) N-terminal subdomain of bacterial
          translation initiation factor IF2 {Escherichia coli
          [TaxId: 562]}
          Length = 49

 Score = 22.6 bits (49), Expect = 2.1
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 3/34 (8%)

Query: 23 EAGANVEDLICEYQQYQEASIEDTVEIATSDDEK 56
          E   +VE L+   QQ+ +A I  + + + S  EK
Sbjct: 11 ERQTSVERLV---QQFADAGIRKSADDSVSAQEK 41


>d2nwva1 d.326.1.1 (A:2-113) Hypothetical protein Ava3320
          {Anabaena variabilis [TaxId: 1172]}
          Length = 112

 Score = 22.4 bits (48), Expect = 6.5
 Identities = 8/32 (25%), Positives = 13/32 (40%)

Query: 28 VEDLICEYQQYQEASIEDTVEIATSDDEKGDH 59
          ++ ++ EY      S E   E     DE  D+
Sbjct: 10 IKQVLTEYDNLSRQSPETNYETCLVFDENHDN 41


>d1gpja1 a.151.1.1 (A:303-404) Glutamyl tRNA-reductase
          dimerization domain {Archaeon Methanopyrus kandleri
          [TaxId: 2320]}
          Length = 102

 Score = 22.1 bits (47), Expect = 6.8
 Identities = 7/47 (14%), Positives = 14/47 (29%)

Query: 14 EGMDEFEFHEAGANVEDLICEYQQYQEASIEDTVEIATSDDEKGDHR 60
          E +   E          L+ +  +      +  +E A    + GD  
Sbjct: 11 EELSTVEEELEKLKERRLVADVAKSLHEIKDRELERALRRLKTGDPE 57


>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa)
          [TaxId: 9823]}
          Length = 476

 Score = 22.1 bits (46), Expect = 9.3
 Identities = 5/20 (25%), Positives = 10/20 (50%)

Query: 16 MDEFEFHEAGANVEDLICEY 35
          M+  +F   G  + D + +Y
Sbjct: 1  MNASDFRRRGKEMVDYMADY 20


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.132    0.392 

Gapped
Lambda     K      H
   0.267   0.0685    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 274,195
Number of extensions: 9680
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 10
Length of query: 70
Length of database: 2,407,596
Length adjustment: 38
Effective length of query: 32
Effective length of database: 1,885,856
Effective search space: 60347392
Effective search space used: 60347392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.0 bits)