Query psy5930
Match_columns 2426
No_of_seqs 173 out of 248
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 22:07:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5930.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5930hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0889|consensus 100.0 0E+00 0E+00 4083.7 175.3 2208 1-2426 290-2533(3550)
2 COG5032 TEL1 Phosphatidylinosi 100.0 1.6E-39 3.5E-44 469.5 44.6 1175 814-2426 2-1200(2105)
3 KOG0889|consensus 100.0 1.2E-33 2.7E-38 392.1 54.3 1876 1-2426 892-2796(3550)
4 KOG1824|consensus 97.7 0.41 9E-06 64.9 42.0 310 680-1110 813-1155(1233)
5 KOG2171|consensus 96.3 9.9 0.00021 53.9 51.8 664 331-1140 52-831 (1075)
6 COG5181 HSH155 U2 snRNP splice 92.3 28 0.00061 46.2 24.6 385 660-1111 295-745 (975)
7 KOG1242|consensus 92.0 42 0.0009 45.3 26.5 411 662-1155 112-541 (569)
8 PF01602 Adaptin_N: Adaptin N 91.5 17 0.00036 49.2 23.6 340 730-1155 46-387 (526)
9 PF12348 CLASP_N: CLASP N term 91.3 1.5 3.2E-05 52.5 11.9 162 727-914 54-217 (228)
10 PF01602 Adaptin_N: Adaptin N 90.7 76 0.0017 42.9 31.7 291 1499-1907 126-424 (526)
11 PF08163 NUC194: NUC194 domain 89.8 0.24 5.2E-06 63.8 3.6 110 1500-1640 270-381 (394)
12 PTZ00429 beta-adaptin; Provisi 89.7 1.2E+02 0.0025 43.2 30.6 193 727-958 141-333 (746)
13 PF12348 CLASP_N: CLASP N term 87.9 3.3 7.2E-05 49.6 11.3 110 785-906 17-126 (228)
14 KOG1242|consensus 87.1 86 0.0019 42.4 23.8 140 727-897 217-356 (569)
15 PF12755 Vac14_Fab1_bd: Vacuol 85.9 11 0.00024 39.6 12.2 94 791-901 2-95 (97)
16 KOG0890|consensus 85.0 4.2 9E-05 61.0 11.4 107 2262-2399 1371-1478(2382)
17 KOG0915|consensus 82.9 6.4 0.00014 56.8 11.4 127 772-907 1036-1164(1702)
18 PF05918 API5: Apoptosis inhib 81.9 8.4 0.00018 51.8 11.6 171 954-1156 47-226 (556)
19 KOG2023|consensus 81.5 54 0.0012 44.4 18.0 318 760-1111 385-795 (885)
20 KOG1248|consensus 80.1 91 0.002 45.0 20.5 91 799-901 75-165 (1176)
21 KOG0212|consensus 79.9 1E+02 0.0022 41.2 19.6 268 727-1052 85-410 (675)
22 KOG1824|consensus 78.3 85 0.0019 44.2 18.8 155 727-909 48-209 (1233)
23 PF08167 RIX1: rRNA processing 77.4 24 0.00051 40.6 12.1 80 771-853 21-100 (165)
24 PF10274 ParcG: Parkin co-regu 76.5 4.2 9.2E-05 47.2 5.7 119 430-553 36-169 (183)
25 KOG1943|consensus 75.0 2.3E+02 0.0049 41.0 21.8 325 726-1090 341-746 (1133)
26 PF12895 Apc3: Anaphase-promot 74.5 10 0.00023 37.9 7.4 77 2296-2396 2-84 (84)
27 PLN03076 ARF guanine nucleotid 73.7 4.5E+02 0.0098 41.1 26.2 81 771-855 1133-1217(1780)
28 PF11707 Npa1: Ribosome 60S bi 72.1 2.3E+02 0.005 36.4 20.2 203 1812-2031 16-240 (330)
29 PF08767 CRM1_C: CRM1 C termin 71.3 94 0.002 39.7 16.4 64 678-759 132-198 (319)
30 KOG1241|consensus 68.9 1.5E+02 0.0032 41.3 17.4 314 731-1090 95-438 (859)
31 PF10508 Proteasom_PSMB: Prote 65.3 4.2E+02 0.009 36.2 21.5 302 731-1087 43-366 (503)
32 KOG2274|consensus 64.9 5.5E+02 0.012 36.8 21.7 143 876-1046 6-155 (1005)
33 cd00020 ARM Armadillo/beta-cat 64.7 27 0.00059 36.5 8.4 112 776-903 8-120 (120)
34 KOG1248|consensus 64.2 5.3E+02 0.012 37.9 22.0 216 1778-2026 635-874 (1176)
35 PF12719 Cnd3: Nuclear condens 63.8 3.9E+02 0.0085 33.7 21.1 45 1017-1061 112-157 (298)
36 PF13176 TPR_7: Tetratricopept 63.7 9 0.00019 32.4 3.6 24 2375-2398 4-27 (36)
37 KOG0212|consensus 62.8 5.4E+02 0.012 35.0 28.0 343 737-1183 54-427 (675)
38 PF12755 Vac14_Fab1_bd: Vacuol 62.3 63 0.0014 34.0 10.2 94 743-850 3-96 (97)
39 KOG2171|consensus 61.5 7.6E+02 0.017 36.3 40.1 352 727-1153 119-478 (1075)
40 PF14500 MMS19_N: Dos2-interac 59.0 2.4E+02 0.0052 35.1 16.1 188 1805-2046 3-200 (262)
41 PF13174 TPR_6: Tetratricopept 57.0 15 0.00032 29.6 3.7 25 2375-2399 5-29 (33)
42 PF12460 MMS19_C: RNAPII trans 56.2 6.2E+02 0.013 33.6 26.1 118 726-849 271-393 (415)
43 PF00515 TPR_1: Tetratricopept 53.1 19 0.00042 29.5 3.8 27 2373-2399 4-30 (34)
44 KOG2956|consensus 53.0 1.8E+02 0.0039 38.5 13.7 159 727-920 330-491 (516)
45 PTZ00429 beta-adaptin; Provisi 52.9 9.2E+02 0.02 34.6 29.3 220 883-1153 188-413 (746)
46 PF14911 MMS22L_C: S-phase gen 51.6 5E+02 0.011 34.0 17.5 179 1688-1906 163-346 (373)
47 KOG2259|consensus 50.4 8.9E+02 0.019 33.7 20.0 312 725-1134 233-552 (823)
48 COG1660 Predicted P-loop-conta 48.5 6.7 0.00015 47.5 0.5 25 484-510 7-35 (286)
49 PF02985 HEAT: HEAT repeat; I 48.1 28 0.0006 28.6 3.9 28 877-904 3-30 (31)
50 PF11864 DUF3384: Domain of un 48.1 8.6E+02 0.019 32.9 30.8 253 1501-1829 43-329 (464)
51 PF13374 TPR_10: Tetratricopep 47.7 24 0.00052 29.9 3.7 27 2374-2400 6-32 (42)
52 KOG1240|consensus 46.2 9.4E+02 0.02 35.8 19.6 207 673-916 526-739 (1431)
53 PF13424 TPR_12: Tetratricopep 45.0 1.4E+02 0.003 29.2 9.1 41 2352-2399 35-75 (78)
54 PF03378 CAS_CSE1: CAS/CSE pro 44.9 7.7E+02 0.017 33.1 18.4 290 818-1157 46-347 (435)
55 PF01603 B56: Protein phosphat 43.5 9.4E+02 0.02 32.0 20.7 107 1777-1900 273-381 (409)
56 KOG1943|consensus 41.2 3.1E+02 0.0068 39.7 14.1 160 721-905 668-839 (1133)
57 KOG1967|consensus 40.9 1.1E+02 0.0024 43.2 9.7 124 1775-1914 883-1015(1030)
58 PRK09687 putative lyase; Provi 40.4 1.6E+02 0.0034 37.0 10.6 29 874-902 192-220 (280)
59 PF12460 MMS19_C: RNAPII trans 39.9 4.1E+02 0.009 35.2 15.0 91 430-524 321-412 (415)
60 PF07719 TPR_2: Tetratricopept 38.6 42 0.00092 27.2 3.7 26 2374-2399 5-30 (34)
61 PF12717 Cnd1: non-SMC mitotic 37.9 1.7E+02 0.0037 34.0 9.8 73 999-1073 41-115 (178)
62 PF13181 TPR_8: Tetratricopept 37.6 48 0.001 27.0 3.8 26 2374-2399 5-30 (34)
63 PF12074 DUF3554: Domain of un 37.0 1E+03 0.022 30.5 18.6 164 1803-1983 63-255 (339)
64 PF02985 HEAT: HEAT repeat; I 36.5 55 0.0012 26.8 3.9 29 727-755 1-29 (31)
65 PF01603 B56: Protein phosphat 35.8 4.8E+02 0.01 34.6 14.6 152 1427-1639 216-371 (409)
66 PF12612 TFCD_C: Tubulin foldi 35.5 1.9E+02 0.004 34.2 9.7 96 1012-1107 80-183 (193)
67 PF08506 Cse1: Cse1; InterPro 34.7 1E+02 0.0022 40.3 8.0 121 276-399 16-147 (370)
68 KOG2549|consensus 32.0 5.8E+02 0.013 34.7 13.8 143 1754-1916 239-394 (576)
69 PF03668 ATP_bind_2: P-loop AT 31.4 16 0.00035 45.4 0.0 28 485-514 8-39 (284)
70 COG5240 SEC21 Vesicle coat com 30.6 2.2E+02 0.0047 38.3 9.5 138 745-902 356-515 (898)
71 KOG2274|consensus 29.7 2E+03 0.043 31.7 20.1 117 771-904 486-603 (1005)
72 KOG0213|consensus 28.9 1.9E+03 0.041 31.2 27.7 143 1019-1180 841-1004(1172)
73 COG5181 HSH155 U2 snRNP splice 28.8 8.1E+02 0.017 33.7 14.1 153 722-907 761-916 (975)
74 PF13428 TPR_14: Tetratricopep 28.6 71 0.0015 28.1 3.6 25 2375-2399 6-30 (44)
75 PF05804 KAP: Kinesin-associat 27.9 2E+03 0.043 31.2 20.3 127 1195-1336 466-604 (708)
76 PF10508 Proteasom_PSMB: Prote 27.4 1.7E+03 0.038 30.3 25.5 268 1729-2030 134-422 (503)
77 KOG1062|consensus 27.2 2.1E+03 0.045 31.1 23.6 263 1766-2083 114-397 (866)
78 PRK13800 putative oxidoreducta 27.1 2E+03 0.043 32.1 19.7 60 727-804 622-681 (897)
79 PRK09687 putative lyase; Provi 26.5 3.9E+02 0.0085 33.5 10.9 57 728-802 25-81 (280)
80 cd02679 MIT_spastin MIT: domai 26.5 91 0.002 31.7 4.3 36 2370-2405 8-43 (79)
81 KOG4653|consensus 25.2 1.1E+03 0.024 33.9 15.0 204 1876-2110 678-902 (982)
82 TIGR02552 LcrH_SycD type III s 25.0 2.9E+02 0.0063 29.7 8.5 58 2342-2399 51-114 (135)
83 PF13001 Ecm29: Proteasome sta 25.0 4.6E+02 0.0099 35.8 11.9 146 1377-1560 294-450 (501)
84 smart00299 CLH Clathrin heavy 23.8 3.7E+02 0.008 29.5 9.1 85 2285-2395 10-94 (140)
85 PF10521 DUF2454: Protein of u 23.8 7.1E+02 0.015 31.3 12.5 212 874-1108 1-266 (282)
86 PF13424 TPR_12: Tetratricopep 23.2 93 0.002 30.4 3.8 26 2374-2399 9-34 (78)
87 smart00028 TPR Tetratricopepti 22.9 1E+02 0.0022 23.0 3.3 25 2375-2399 6-30 (34)
88 PF14500 MMS19_N: Dos2-interac 22.8 2.4E+02 0.0052 35.1 8.0 81 1027-1110 7-90 (262)
89 KOG3961|consensus 22.1 1E+02 0.0022 36.6 4.2 71 430-504 112-183 (262)
90 PF12074 DUF3554: Domain of un 21.6 1.5E+03 0.031 29.1 15.1 109 673-804 26-136 (339)
91 PRK13800 putative oxidoreducta 21.5 1.1E+03 0.024 34.7 15.4 75 727-801 653-740 (897)
92 PF11838 ERAP1_C: ERAP1-like C 21.3 1.7E+03 0.036 27.9 16.6 97 1943-2066 166-262 (324)
93 KOG2023|consensus 20.8 9.6E+02 0.021 33.4 12.8 173 727-921 129-301 (885)
94 PF11864 DUF3384: Domain of un 20.7 2.2E+03 0.047 29.0 29.8 112 998-1110 44-186 (464)
No 1
>KOG0889|consensus
Probab=100.00 E-value=0 Score=4083.67 Aligned_cols=2208 Identities=37% Similarity=0.600 Sum_probs=0.0
Q ss_pred CCCcCcccccccccccccccchhhHHHHHHHHHHhhcCCCChHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHH
Q psy5930 1 MSQLFEEDFQLGSGWTTHESLRPLVYSTLADLVHHVRQLLPMSDLIKAVHLFSKNIHDETLPTTIHTMSCKLLLNLVDFI 80 (2426)
Q Consensus 1 id~Llde~vLiG~g~t~~e~LRplays~lADliHhvR~~L~~~qi~~~v~~~~~~lhD~~l~~s~q~ms~kLllnLve~i 80 (2426)
||+|+||+||||+|+|++||||||||||||||+||||++|+++||.|+|++||+||||++++.+||||||||+|||||||
T Consensus 290 id~L~de~iLiG~G~t~~e~lRplays~LAdllHhvR~~L~~~~i~~~i~l~s~~l~D~~l~~~iq~m~akLllNlve~i 369 (3550)
T KOG0889|consen 290 IDKLLDERILIGTGFTAQESLRPLAYSMLADLLHHVRESLSLTQIIKVISLFSRNLHDSSLSSGIQTMSAKLLLNLVERI 369 (3550)
T ss_pred hHHHhccceeecCCcchhhhccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhcCcchHHHHHHHHHHHHHHHHHHH
Q ss_pred HhcChhhhhhccCCCchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhcCCCCCCCCCCCCCCCCCCCCCccCCCC
Q psy5930 81 RTKNQAEIEQGRIGDNIGQELLERMLETMVLKFKTIAKLQLPVLTAKAKTQLALPAPELPSTTEDVKPVVNPQTNLIDSP 160 (2426)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~r~lL~~il~~~v~Kf~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (2426)
..+..++..++ |++|++|||+||+||+++++++.|+++.+++++.+..+..++.. ..+.|
T Consensus 370 ~~~~~~s~~~~-------~~lL~~il~~~v~kf~t~~~~~~~~~~~~~~~e~~~~~~~~~~~-------------~~~~P 429 (3550)
T KOG0889|consen 370 EELGCQSVDRA-------RDLLLRILESFVSKFKTFARYRDSAQFQKCKYEIKIGELKNSLP-------------KIERP 429 (3550)
T ss_pred HHhcCCchhHH-------HHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhhHhhhccccc-------------cCCCc
Q ss_pred ccccCCcccCCCccCCCCCCCCCCCccchHHHHHHHHhhhHHHhhccccccCCCCCCCCCCCCCCCCCCchhHHHHHHHH
Q psy5930 161 AKTTAGVEKQKPKLGISNSPAANYNVNDCRSIVKILICGVKTVTMGLAASKVNASGGEGPTTPPFGQFQPKDTKVYIRLV 240 (2426)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~v~d~r~l~k~l~~g~kti~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~lf 240 (2426)
...+....+ |+|+|+|+||+++|+|||+|||++|+.|+++ +...++ ....+..+..+..++
T Consensus 430 ~~~~~~~~k----------------v~d~~~L~k~l~~G~Kti~~~i~~~~~p~~~--~~v~~~-~~~~~~~~~~~~~~~ 490 (3550)
T KOG0889|consen 430 AEVPSFGSK----------------VNDCRFLFKTLVSGLKTIIWGIKVAKSPPPS--GFVFNR-LWKYVMHTCSYISLV 490 (3550)
T ss_pred cccCccccc----------------chhHHHHHHHHHhhhHHhhHHhhhccCCCcc--ccccch-hhhhhhHHHHHHHHH
Q ss_pred HHHHhhccccccCCCCCCCCCCcccCCccccccCChHHHHHHHHHHHHHHccChhhHHHHHHhhHHHHHHHHhhcccHHH
Q psy5930 241 KWALKALDVYTLNPSSSSLLPNNLQRTPLQQASRTKEEKEVLEHFAGVFSLMTPQTFREIFASTIDYMVDRMAHNYTLQV 320 (2426)
Q Consensus 241 ~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eeke~le~fa~vF~~ld~~~F~Ei~~~~i~~l~e~~~~n~~L~~ 320 (2426)
++....+.+|..+...+. .++....++++|||||++|+||++|++|||++|.|||++++|++||||++|.+|+|
T Consensus 491 ~~~me~l~~~~~~~~~~~------~~~~~~~s~r~keEke~lE~fa~vF~~i~~s~f~eIfe~~~p~iferi~~n~~l~~ 564 (3550)
T KOG0889|consen 491 RDAMEVLEIYPVNKEDNY------DNPSNSSSPRTKEEKEALEEFATVFEMIDPSVFYEIFETNSPFIFERILKNNALFH 564 (3550)
T ss_pred HHHHhHhhhhheeecccc------ccccccccccchhHHHHHHHHHHHHHHhCcHhHHHHHHHhhHHHHHHHhccCcHHH
Q ss_pred HhHHhhcCCCChhhHHHHHHHHHHHHhhhcCCCCccchhHHHHHHHHHhhhcccCCCCCcccccchHHHHHHHHHHHHHh
Q psy5930 321 ISNSFLVTRDTSPVFATVLVEYLLEHMEEMGNGNVERSNLCLKLFKLVFGSVSFYPAENEHMLRPHLHQIVNRSMELAMT 400 (2426)
Q Consensus 321 i~q~fL~~~~~s~~F~~ill~fL~~~l~~lg~~~~~~~~~~lrLfkl~F~sv~~~~~~nE~vl~phl~~ii~~~~~~a~~ 400 (2426)
|+|+||+||.||+.|++||++||++||+++|+++..+++++|||||++||+|++||.+||+||+||+++||.+||++|++
T Consensus 565 i~n~~l~n~~ts~~fa~ill~fll~rl~e~gs~~~~~s~l~LrLFkl~F~sv~~f~~~nervl~phv~~Ii~~smela~~ 644 (3550)
T KOG0889|consen 565 IANTLLSNESTSVNFANILLSFLLSRLKELGSNDLLDSKLLLRLFKLIFGSVSKFPSENERVLRPHVHDIISTSMELATT 644 (3550)
T ss_pred HHHHHHhCcccchhHHHHHHHHHHHHHHHHccCccccchhhHhhhhhhhhhhhcccccchhhcccchhHHHHHHHHHHhc
Q ss_pred hcCchhHHHHHHHHHHhhcCCchhhHhhhHHHHHHHHHHHHHHhhhcCccchhhhHHhhhhhccccccccccCCcchhhH
Q psy5930 401 AKEPYNYFLLLRALFRSIGGGSHDLLYQEFLPLLRNLLQGLNSLQSGLHKQQMKDLFVELCLTVPVRLSSLLPYLPMLMD 480 (2426)
Q Consensus 401 a~ep~~Y~~LLR~lFRSiggg~fe~LYkeilPLLp~lLe~Ln~Ll~~~~~~~~RdL~VELCLTVPvRLS~LLPyL~~LM~ 480 (2426)
|+||+|||+|||+||||||||+||.||+||+|+||++||.||+|+.++|+++|||||||||||||||||+||||||+||+
T Consensus 645 a~eplnYf~LLraLFRsigGg~~d~ly~e~lplL~~lLe~ln~l~~~~~s~~mkdLfvELclTvPvRLS~Llpylp~LM~ 724 (3550)
T KOG0889|consen 645 APEPLNYFQLLRALFRSIGGGAFDSLYREVLPLLPNLLEILNHLLSSFHSQGMKDLFVELCLTLPVRLSSLLPYLPLLMK 724 (3550)
T ss_pred CCcchhHHHHHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHHHhhhHHHHHhhhhhhhhhh
Q ss_pred HHHHHhcCCchhHHhhhhhhhhhhccCCcchhhhccchHHHHHHHHHHhhcCCC-CchhhHHHHHHhhccCCCccccccc
Q psy5930 481 PLVSALNGSSTLISQGLRTLELCVDNLQPDFLYDHIQPVRADLMQALWRSLRSP-NEQVAHVAYRVLGKFGGGNRKMMIE 559 (2426)
Q Consensus 481 PLV~AL~~~~eLvsqGLRTLElcVDNLtpdfLdp~~~pV~~elm~ALw~~Lkp~-~~~~~~~a~RILGKLGGrNR~~L~~ 559 (2426)
|||.||+|+|+||+||||||||||||||||||||||+||++++|+|||+||||. +++++|.|+|||||||||||+|+++
T Consensus 725 PLv~aLkgs~~lvsQgLRtlelcvDnltPefL~~~mepv~~~lmqaLw~~l~~~~~~s~s~~a~rILGKlgG~NRq~l~~ 804 (3550)
T KOG0889|consen 725 PLVFALKGSPELVSQGLRTLELCVDNLTPEFLDPIMEPVRDDLMQALWSHLRPVPNYSYSHRALRILGKLGGRNRQFLKR 804 (3550)
T ss_pred HHHHHhcCCHHHHHHHHhHHHHHHhcCChHhhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHhhcCcchhhccc
Q ss_pred CCCCccccccCCCCeEEEEecCCCcccccchhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhcccCC-CChhHHHhh
Q psy5930 560 PQKLDYNIRRSNGPAVVVHFPEHQKTINLSVEKAIDVAITVLKNPAVDMFYRKQGWKVVKGYIISSMNLS-DNRSTIQKL 638 (2426)
Q Consensus 560 p~~L~~~~~~~~~~~~~~~f~~~~~~~~lpl~~~i~~A~~~l~~~~~d~~yr~~A~~~l~~~l~~~l~~~-~~~~~~~~~ 638 (2426)
|++|++.++.+.++++.+.|.|..+++.+|+++.|..|.+++.++..|.|||+|||+++++.+..+++.+ +.......+
T Consensus 805 ~q~l~~~~~~~~~~~l~~s~~~~~~~~~lp~~~~i~sA~~~l~s~~~d~~~~~qa~~~l~~~~~~~~~~~~~~~~~~~~l 884 (3550)
T KOG0889|consen 805 PQDLEEIDEDDIDIRLVFSFKGLAHPLLLPLSKLIRSAFDALVSPNSDPFYRKQAFKYLRCDLLLMVNLSADFKSSIRQL 884 (3550)
T ss_pred ccccccccCccccceEEEeccccCccccCchHHHHHHHHHHHhCccCCcchHHHHHHHHHHHHHHHHhhhccchhhHHHH
Q ss_pred hcCCC--------CCCCCCCCCcccccCChhHHHHHHHHHHHHHHHhcchhHHHhHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy5930 639 FSHPS--------FGNTESSQGTMYKYADPTIRNTHQNALTGIFMVYLIKELRKDSLLYTVLVVRHYTLVAITQQTGPFP 710 (2426)
Q Consensus 639 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~f~a~~~~~l~~~a~~f~~~v~rhf~l~~i~~~~~~~~ 710 (2426)
..... ......+..+.+++++..++.+|.+++.++|+|.+++|++++|.+|+..++|||+++.+..+.++..
T Consensus 885 ~~~~~~~i~~~~e~~~~n~~~~~~~~~~~~a~~~~~~~~l~~~~~a~~~~elr~~a~~~~~~il~~f~~~~~~~~~~~~~ 964 (3550)
T KOG0889|consen 885 LTLVVWSIDLRLECCEINLDLTERYKSQDYSDRSIFVNALISLFYATSCKELRDEAQDFLEAILRHFALHGVVLYTGSNQ 964 (3550)
T ss_pred HHhhcchHHHhhHhhhccccccccccccchhHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHhhcchh
Q ss_pred CCcccc----cccCCCChHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHhhCCchhhcchhhHHHHHHHHHHhccC
Q psy5930 711 LYGKSA----LLEGTMDPLVLIDAIAVILGHEDKELCKPGYIALKCIMETATCITGSIENACNLPLMEYLAERMCNLCYE 786 (2426)
Q Consensus 711 ~~~~~~----~~~~~ld~~vl~DAi~~~l~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~p~~~~L~~rf~~~Cy~ 786 (2426)
...... ....++||.+++|||++||++++++++++|..++..|++++..++|+.+.++++|+|.+|+++|||+||+
T Consensus 965 ~~~~~~~~~~~~~~~lD~~i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~ 1044 (3550)
T KOG0889|consen 965 LKHSNFGSNLQYKKMLDPSTFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYD 1044 (3550)
T ss_pred ccccccccccccccccCHHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhcc
Q ss_pred chhhhhHhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhhh
Q psy5930 787 RAWYAKLGGCYAIKFFYNTMAIKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAETLT 866 (2426)
Q Consensus 787 ~~w~~K~gG~~gi~~l~~~~~~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~ 866 (2426)
+.||+|.|||.||++|+++++..|+.++|.++++|++||+||++.|+|++..+.|.+.+..+++.|++....+ +
T Consensus 1045 ~~wy~k~gG~~gI~~l~~~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~------~ 1118 (3550)
T KOG0889|consen 1045 STWYAKDGGVNGIKCLIESMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAE------E 1118 (3550)
T ss_pred HhHHHHcCCCceeeeehhhchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhh------H
Q ss_pred hhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhCCchhhccccchhhhhccCCCCccccccCchhhhHhhhhhh
Q psy5930 867 VQSKALSEVTNELTRNITLPNDLLREQSMYLLQVFAETQGKSVVQVMEPHKDVLADIIPPKKLLIRNHSANAQIGLMEGN 946 (2426)
Q Consensus 867 ~~~~~~~~~~~~lv~eL~s~n~~VR~~aq~~L~~lae~t~~~v~ell~p~k~~Ll~~I~~Kpl~lRalpf~~QIG~idai 946 (2426)
.+.+.++++++.+|.||+|||+.||+++|.+|..+++.+|.||++||+|+|++++.|+|+||+ |++||++|||+|||+
T Consensus 1119 ~~~~~~~~~~~~lv~eL~npN~~VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~l--r~~p~~~qig~vd~~ 1196 (3550)
T KOG0889|consen 1119 ERAKSAMNVFSPLVLELFNPNSDVREFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPL--RALPFTIQIGHLDAI 1196 (3550)
T ss_pred HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhcccccccc--ccCCHHHHhhhHHHH
Q ss_pred hhhcccCCCccccCcchhhHHHHHHHHHHhhccCchhh---hcCCCCCCccccchHHHHHHHHHHhhhcCCch-------
Q psy5930 947 TFCQSLTPRLFTTDMSIHEHSSFFQEITNICESSDQAL---MKLPCYKPISSLVPLRKAAMRALASWHYVPNC------- 1016 (2426)
Q Consensus 947 tfcl~L~p~~l~~~~~~~el~rll~E~l~LadadD~~l---~k~~~~k~~~~lv~LRv~ci~lL~~~~~~~~~------- 1016 (2426)
|||++++|++|+|+ +|+.++.++..+|||+||+.+ .|.++||+...+++||++|+++|++|++..+|
T Consensus 1197 ~fC~~l~p~~f~~~---~~l~~l~~~~~~La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~ 1273 (3550)
T KOG0889|consen 1197 TFCLSLGPCLFDFT---EELYRLKRFLIALADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAE 1273 (3550)
T ss_pred HHHHHcCCcccCch---HHHHHHHHHHHHhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhcccccchhhhh
Q ss_pred -hhHHHHHHHHhhcCCCHHHHHHHHHHHHHHHcc-CCCChhhHHHhhHHHHhhhcCCCCCCHhHHHHHHHhhhhCCCccc
Q psy5930 1017 -SQKIFNTLFAALERPNPELQEAAFQAMKTFVNG-SPIDLKSVYEVMKPLLLTLGDYRNLNLVTARKLSYIVQPFPSSFS 1094 (2426)
Q Consensus 1017 -~~rIi~vfFKsL~s~s~ei~~aA~~gLk~vL~~-~~~~~e~L~q~LRPiL~nLsD~k~Ltv~gLegLarLLeLL~nyFk 1094 (2426)
|.||++||||+||++++||+++|.+||+.|+++ ++.++|.+|.+|||+||||+||++|+|||++||+|+++|++||||
T Consensus 1274 ~r~kii~v~fk~l~~~~~Ei~~~~~~~l~~v~~~~~~~~ke~lq~~lrplL~~l~d~~~lsv~~l~~ls~l~~ll~~~f~ 1353 (3550)
T KOG0889|consen 1274 LREKIIAVFFKSLYKRSSELIEVALEGLRKVLAQDVKLPKELLQSHLRPLLMNLSDHNNLSVPGLEGLSRLLRLLINYFK 1353 (3550)
T ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhhccccccHHHHHhhHHHHHHhhhHhhhhhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhhhhhhhh-cCCCCCCcchhHHHHHHHhhccCchhHHhhHHHHHHHHHHHHHhcCCCCCCCCcchH
Q psy5930 1095 EKLCEQLLVNLKNLFENIVAQK-ENPPKNSETEKIIVVIIGIFKESPAAKAQFIEPLISLILENEHALSIGPYSPYREPL 1173 (2426)
Q Consensus 1095 veiG~KLLdHLk~~~e~~~~~~-~~~~~~~~~~kii~aIinIFHLLP~aa~~Fle~Lv~~Vl~lE~~L~~~~~SPfR~PL 1173 (2426)
||||+||+||+++|.++.+.+. ...++.+.++||+++|+|+||++|+++++|+++|+.+|+.+|+.|+.+.+||||+||
T Consensus 1354 ~e~~rkll~hl~~~~~~~~~~y~~~~l~~~~~~~i~~~~i~~f~~lp~~~~~~~~~Ll~~v~~~e~~L~~~~~sp~r~pl 1433 (3550)
T KOG0889|consen 1354 VEIGRKLLQHLKKWLEDEVLDYLSGALKAGPEMKIIVVIINLFHLLPPAADKFLDELLLCVVLLEEVLRKEENSPFREPL 1433 (3550)
T ss_pred HHHHHHHHHhhHHhhhHHHHHHHhhhhccCccchhhhHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhHH
Q ss_pred HHHHhhCcHHHHHHhhcccCCCchhHHHHHHHHhhCCCCHHHHHHHHHhhHHHHHHHHhhcCCCCCCCcchHHHhHHHHH
Q psy5930 1174 VKYLLRYPTETLQSMLSEIHMKDPLWRNFFVYLIKHQEGKCFRDALQTQFVDRLILYTFSAINPNCTNLTTAEKLEMQYI 1253 (2426)
Q Consensus 1174 ~kfLnRyp~e~~~~Fl~~~~l~~~~~~~~f~~il~~~~a~~Lr~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 1253 (2426)
.|||||||.+||+||+ .++.+++|.++|.++++.+.+.+||+++.++ +.++.............+ ..+.+.+++
T Consensus 1434 ~kfl~r~~~~tv~~f~--~~~~~~~~~~~f~~~~~~~~~~~l~e~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 1507 (3550)
T KOG0889|consen 1434 LKFLNRFANPTVDYFL--AQLDEPDLYRMFVYALRIDDLLPLREVLAKE-WLEFYTLLDPEISSYTVP---NMASDIQFQ 1507 (3550)
T ss_pred HHHHHHccCchHHHHH--HHcchHHHHHHHHHHHcccchhHHHHHHhhh-HHHHHHhccCccCccccc---hhhcchhhh
Q ss_pred HHHHHHHHHhcCchhhhcChhHHHHHHHHhhchHHHHhhcccccccccccchHHHHHHHHHHHHhhCCCchhhHHHHHHH
Q psy5930 1254 GIRLVSILIKLDTKWLSSQNQLISVMQKIWCDDEYLQRHRNVENISYVHWKEPKLLVKILLHYFSHHRHIIDLLFFILRA 1333 (2426)
Q Consensus 1254 ~l~lv~~l~k~~~~WL~~~~~~v~~L~~~w~~~~~~~r~~~~~~~~~~~~~~~~~l~~i~l~yl~~~~~~~dlLF~ll~~ 1333 (2426)
++.++.++.|+.++|+.++..++.+++.+|....+..|+.....+- ...+++||++|++.+.+|++++|+++++
T Consensus 1508 ~v~~i~~~vk~~~e~~~s~~~iv~~l~~v~~~~~~~~~~~~~~~l~------~~~~~~~lL~~~~~~~~~~~l~~~il~~ 1581 (3550)
T KOG0889|consen 1508 MVPLISTMVKNDDEWLLSSQFIVLALRRIWKLESILERLFLEDRLC------LNSIVKCLLEYLSLNKYDLELLLQILSF 1581 (3550)
T ss_pred hhHHHHHHHhccHHHhhccchHHHHHHHHhhhhHHHHHHHHHHHHH------HHHHHHHHHHHHhhccccHHHHHHHHHH
Q ss_pred HhhccCCCchHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhhHhhHhhhcCCCcccccCCCC
Q psy5930 1334 VTERLLPDFTFLREFLETTVAQTYSIEWKRKAFLRFLELFKLALVSQELKAKILQLVLIPCLTVCFERGEGDKLIGGTGL 1413 (2426)
Q Consensus 1334 ~~~~~~~d~~fl~~F~~~~V~~~~s~e~kr~il~~fl~~f~~~~~~~~~k~~~L~~iv~P~L~~~f~~~~~~~~i~~~~~ 1413 (2426)
|..++.+|.+|+++|+..+|+++++..|||+.|.+|++.|.++....++|++.++++|+|++.++|++|+.++++|
T Consensus 1582 ~~~~~~~d~~~l~~~l~~~vi~~~~~~~kr~~f~~~l~~f~~~~~~~~~~~~~l~~li~p~l~~~~~kge~~~i~~---- 1657 (3550)
T KOG0889|consen 1582 FEGNDNIDLTFLKEFLEHEVIKSYSYNMKRNLFLVFLNLFGDKDLGADHKAQVLQGLINPCLNYSFEKGETNEILG---- 1657 (3550)
T ss_pred HhccCCccHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhcCCcccchhHHHHHHHHhhhHHHhhcccccccccccC----
Q ss_pred CCcccccchhHHHHHHHHhcCCCCCCCCccCCChhHHHHHHHHHHHHHhhcccccccccccchhhhcccchhcccCCccc
Q psy5930 1414 PEDEDNKNANLVNEFIAKIISPITESPPVFVISDNVRILLLQMCCLIVEQSYHYVYNVSQGKILVNKAKPLIMFAWQLSL 1493 (2426)
Q Consensus 1414 ~~~~~~~~~~~v~~~~~ki~~~~~~~~~~~~~~D~lrieLLQLstlLvk~~~~~i~~~~~~~~l~~~rK~lIkFaW~~i~ 1493 (2426)
++..++++..++++.|+|. ..++|++||++||++|++||++|+|||+ +++++|||||||++
T Consensus 1658 ----~d~~~~~~~~~~~~~~~~~------~~~dd~~~i~~lqL~t~~ik~ase~i~d---------~~~~li~f~w~cl~ 1718 (3550)
T KOG0889|consen 1658 ----PDIVKKIDEVFVNKPLDPS------YAYDDGLRIELLQLATLLIKYASEHIHD---------QRKSLIKFAWNCLK 1718 (3550)
T ss_pred ----CccchhhhhhhccCCCchh------hhccchHHHHHHHHHHHHHhccHHHHHH---------hhHHHHHHHHhhhc
Q ss_pred CCCCCCChhhhHHHHHHHHHHHHhhccCcchhhHhhHHhhhhcCcchHHHHHHHHHhhcCCCCCCCCCchhhHHHHHHHH
Q psy5930 1494 LGKNFVDPATRYHGHLLLAHMIAKFGVSQRVVVQVFLGLLRAHASEVRPIVRQALEILTPAFPGRVDDGQRMLLVYTKKI 1573 (2426)
Q Consensus 1494 l~~~~~D~~~K~~Ayvlia~fI~~f~~P~KIVlQVfvaLLra~q~E~R~LVrqALDIL~P~Lp~R~~~~~~~w~~~tkki 1573 (2426)
. +||+.||+||+++||||++|++|+|||+|||++|||++|+|+|++||||||+|+|++|.||++|+.+|..|+|||
T Consensus 1719 ~----eD~~~k~~~~~~i~~fI~~~~~~~kiV~qvf~~LlkT~~~E~R~~vk~aLdil~p~l~~rm~~g~~~~~~w~kki 1794 (3550)
T KOG0889|consen 1719 S----EDPMIKQSAYLVIAHFIERFQIPPKIVLQVFVALLKTYQPEARAIVKQALDILTPALPARMELGDSKIPIWVKKI 1794 (3550)
T ss_pred c----cchHHHHHHHHHHHHHHHHhccChhHhHHHHHHHhhcccHHHHHHHHHHHHHhchhhhhhccCcccchHHHHHHH
Q ss_pred HhccCCChhhHHHHHHHHhcCCccchhhhhhhHHHHHHHHhhhCCCCCc-chhhHHHHHHHHHHHHhhhhhhhhhhccCC
Q psy5930 1574 LVEEGHSNPQLSHVLTLIVKHYKVYYPVRHGLIQQMIASMQRLGFSSSA-MDHKKLSVELADVIIKWELQRVKEEAEGTS 1652 (2426)
Q Consensus 1574 L~EEgh~~~Ql~hI~qlIVRH~dlFY~~R~~fvp~mInsl~kLg~~~n~-~E~r~LAiDL~elIi~WE~~r~~~~~~~~~ 1652 (2426)
++||||+++|++|||||||||||+||++|++|+++|||+|+|+|+++|+ .|+|+||||+|++|++||.+|.+.+..++.
T Consensus 1795 ivee~~~i~~~~~i~qliv~h~~~~~~~r~~fv~~lv~~~~rl~~~pn~~~e~r~laiel~~~ii~We~~rl~~~~~e~~ 1874 (3550)
T KOG0889|consen 1795 IVEEGHSISQLLHVYQLIVRHSDLFYSSRVRFVTPLVNSLPRLGSMPNSNSENRKLALELAGVIIKWELKRLKDTDSETT 1874 (3550)
T ss_pred HHHhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q ss_pred CCCCCCCCcccccccccCCCCCCCCccCCCCCCCCcchhhHHHHHHHHHHH-HhccCCCCCCCCCcccccccCCchhHHH
Q psy5930 1653 GGKAIQEPPRKKMALESFAPGESSMKYDIPTASKPIEKVHADAVINFLARL-SCQVSDLPPNLSSSMQSQVIQTPGEMLA 1731 (2426)
Q Consensus 1653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~vvnfLiR~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 1731 (2426)
..+..+. .+...++++. .+..+.+..+ ++... -+
T Consensus 1875 ~~~~~e~----------------------------------~~~~s~~~~r~~~~~~~~~~~----------~~~~~-~~ 1909 (3550)
T KOG0889|consen 1875 LFSDSES----------------------------------LMSLSASIKRGFSAIPKRYTP----------GPTNH-EG 1909 (3550)
T ss_pred hcccchh----------------------------------hhhhhhcchhHHHhccCCCCC----------Ccchh-hh
Q ss_pred HHHHHHHHHhcCCCCCCCCccccchhhHHHhhccCCCCCccHHHHHHHHHHHHHHHhcCChhHHHHhhHHHHHHHHHHHh
Q psy5930 1732 RRCVSLIRMALKPEVWSHQNTEFKLTWLDKVLSSIDQPTANLGNISIALELLTLLITILDEGQILHIIKPLQRGLVACIS 1811 (2426)
Q Consensus 1732 ~r~l~LLk~~L~p~~W~~~~v~vkl~~feK~L~~~d~~~~n~~~~~naLevL~il~~~~~~~~il~nl~~lq~lL~kcl~ 1811 (2426)
+|+++++..++|+.|+ ++++||+||||+++..|.+..|.++++|+|+||++++++.+++||.+|+.++|++|++|++
T Consensus 1910 -~~~~~l~~~~~~~~w~--~~~~kL~~~eK~lt~~d~~~~~~~~~~~~ld~l~~v~~~~~~~~i~~n~~~vq~~le~cl~ 1986 (3550)
T KOG0889|consen 1910 -RCVNLDLVSLRPETWP--SVNVKLNYFEKVLTDMDLPENNLGNYANGLDVLSVVLENVPKEWIRENLNQIQALLEKCLK 1986 (3550)
T ss_pred -hHHhHHHHhccccchh--hcchHHHHHHHHhcCCCCcccHHHHHHhhHHHHHHHHhcCCcHHHHHhHHHHHHHHHHHHh
Q ss_pred cCchhHHHHHHHHHHHHHhcCCCCCCCCCccCchhhHHHHHHHHHHHHHhhhccccCCCCCCcchHHHHHHHHHHHhhhC
Q psy5930 1812 SSITKVIRLVHALLCRLMSTFPTEPISSNVASKREELDHLYVCVSKVIYEGLSNYEKNPTATCSTLYGTVMMLKAACMNH 1891 (2426)
Q Consensus 1812 ~~n~~i~~~l~~ll~rll~~~p~~~~~~~~~~~~~e~~~f~~~l~~~i~e~L~~~~~~~~~~~~~~~~~l~lL~~~~~~~ 1891 (2426)
|+|.+++++++++++++|+++| .+++|.+..++.+.+.|.+++++|++++.++.++++|+++++|++|.++
T Consensus 1987 ~~~~~v~~~~~~~l~~~~~~~~---------~~~~e~e~~~~~v~~~i~~~l~s~~~~~~~~~~~~~~~~~~l~~~~~~~ 2057 (3550)
T KOG0889|consen 1987 SGNLKVTEALNQLLSRLLSIFP---------NTHESLELLYQVVSKLIDELLTSVTTVPLQLASNVFGTLTLLKTLCSNN 2057 (3550)
T ss_pred ccChhHHHHHHHHHHHHHHhcC---------CCchhHHHHhhHHHHHHHhhhhheecccccchHHHHHHHHHHHHHhccC
Q ss_pred chhhhHhhHHHHHHHHHHHHHhhcc-----CCCCCCccchHHHHHHHHHHHhHhhhcCCHHHHHHHHHHHHHHHhccCCC
Q psy5930 1892 PAYVDRFILEFMRVIQRMAREHIAT-----STADAPQQVGGELLIYCLDLVKTRFCSMSQETRKQFIGTIILGLIDKTPD 1966 (2426)
Q Consensus 1892 p~~iD~~l~~lmk~l~kl~keHl~~-----~~~~~~~~~~~~ll~~~leLl~~Rv~~lg~d~Rr~fls~l~~~LiekS~d 1966 (2426)
|+|+|++++++||+|+|+||||++. ...+.+....++++++++++++.|+.++|.+.||.+.++++++|||||+|
T Consensus 2058 ~~~~drLl~~~~r~~~k~a~dhl~~~~~~~~~~~~a~k~~~ell~~slel~~~ri~~l~~~~r~~~~~~~l~~lieks~d 2137 (3550)
T KOG0889|consen 2058 PDYLDRLLPGFMRCFSKAAKDHLSCGAVLNSQLGDASKGRSELLIKSVELGRERIFYLGDSRRKSLSQSVLVLLIEKSSD 2137 (3550)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHhhcccchhhHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHhhcch
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCCCChhHHHHHHHHHHHHHh-h-cCccHHHHHHHHHHHHhcCCcccCchhhhchhHH
Q psy5930 1967 IKVMKAIIKMTEEWLKVNKVEQNNVPNLKEKCIILVKLMHFVE-K-RFPDLNTMFLEIVLYVYMDENLKNSELVTKLEPA 2044 (2426)
Q Consensus 1967 ~~ll~~Il~iv~~Wv~~~~~~~~~~PtlKEKa~lL~KM~~fe~-r-~~~~L~~~flelV~~Iy~d~~~~~tElt~rLE~a 2044 (2426)
.++|++|++|+++||+++ +.+||.|||+++|+||++|+. | .++++.++|+++|..||+++.+++||+|.|||++
T Consensus 2138 ~~i~~~il~~~~~wi~~~----~~~~t~~ek~all~km~~~~~krf~~~~L~~~~l~~v~~vy~~~~~~~tE~t~rle~~ 2213 (3550)
T KOG0889|consen 2138 ASILRCILKMLKEWIMND----DSFPTVREKLALLLKMLTFEDKRFEDNELLAEFLDLVFTIYRDEIFSNTELTARLERA 2213 (3550)
T ss_pred HHHHHHHHHHHHHHHhcc----ccccchHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhcccchhHHHHHH
Q ss_pred HhhccCCCChHHHHHHHHHHhhhhccCHHHHHHHHhhhcCCCccCCcccHHHHHHHHHhhhccccccccccccCCCCCcc
Q psy5930 2045 FLSGLRCSNPALRAKFFQLLNGSIRRLLHDRLLYIFSSQNWEPMGPHYWLKQCIELILVSAISSSKIKLAEETGVLPNIS 2124 (2426)
Q Consensus 2045 FL~Glrs~d~~iR~kF~~i~d~sl~~~l~~RL~YIi~~QnWe~lad~~WLkqal~LLL~~~~~~~~i~l~~~~~~lp~~s 2124 (2426)
||+|||++||.+|+|||++||+|+|++++.||+||+++|+||+++++||||||++||+++++...++++.+++..+.|..
T Consensus 2214 Fl~Glr~s~~~lR~kF~~i~d~S~~~~~~~RL~yil~~q~W~~~~~~~wikqa~~lL~~~~~~~~~~~~~~~~~~v~~~~ 2293 (3550)
T KOG0889|consen 2214 FLLGLRSSDPGIRSKFFDILDSSLPRDLYSRLLYILDSQDWEAISDVFWIKQALMLLLGTINEVKPISLYPNSERVSPLS 2293 (3550)
T ss_pred HHhhhccCCccHHHHHHHHHHhhcchhHHHHHHHHhccccccccccchHHHHHHHHHHHhhhccCCccCCCCcccccCcc
Q ss_pred ccccccCCchhhhhhhhhhhccccccCCCCCCccchhhhhhhcccccccccchhhhhchHHHHHHHHHHHHHHhhccchh
Q psy5930 2125 SVISLAEDPVERENYFNVVLNAADLKTEPNLNGENILESLEEYEFDVDEFGNCRIQQLSREDLLNKQNKFLENAREYNTS 2204 (2426)
Q Consensus 2125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~h~~fl~~~~~~~~~ 2204 (2426)
..........+...-.+ ..+....+++.+|.+|++..++++++
T Consensus 2294 ~~~~~~~~~~~~~s~~~-------------------------------------~~~~~~~~~~~~~~efl~~~~~~~~~ 2336 (3550)
T KOG0889|consen 2294 PSEEQEPSSVESVSKQS-------------------------------------GSELVLSDFVKGHIEFLEANSEYRVA 2336 (3550)
T ss_pred ccccccccccchhhhcc-------------------------------------cHHHHHHHHHHHHHHhhhhhhhhhHH
Q ss_pred hhHHHHHHHhhcChHHHHHHHHHhHHHHhhcCCHHHHHHHhhhhHhhhccccccccccCCCChHHHHHHHhhhcCCCCCC
Q psy5930 2205 DLLVSLAQLCHLDTHLAEKVWLDMFPQMWSILSETQQQNLTDEIIPFIVSGIHVVQKDVHPSSINTIYESLAHCNPPLPI 2284 (2426)
Q Consensus 2205 dil~pL~~L~~~D~~lA~~lWv~lFp~iW~~L~~~eq~~l~~~li~lLsk~~H~rQ~~~~pnviqtlLegi~~c~p~i~l 2284 (2426)
|++.|+.++||.|+.+|+++|+.+||.+|++++++|+.++++++|+|||++||.+|.+++|||+++|++|+++|.|++++
T Consensus 2337 ~~l~~l~~i~~~~~~~a~~~w~~~Fp~~w~~l~~de~~~~~~~~i~flS~~~h~~q~~~~pnvln~~v~s~~~~~~~~~l 2416 (3550)
T KOG0889|consen 2337 DFLDPLLQIQHHDDKVAEKLWVGLFPIVWSSLSKDEIRNLAGSIIPFLSSGYHIKQQGCRPNVLNALVESLVKIVPPIEL 2416 (3550)
T ss_pred hhHHHHHHHHhcCHHHHHHHHHHHHHHHHhhcCHhhhhcccchhccccccchhhhhhccchhHHHHHHHHHHhhccCCCC
Q ss_pred ChHHHHHHhhhcCcHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHhcCccHHHHHH
Q psy5930 2285 KPAIMTYLGKAQGLWHRVTLSLEKMAVEGLLKQNRMQNRAPSVADCYDFEPDHAPQQQDIIDQLAEMYSALREEDMWFGL 2364 (2426)
Q Consensus 2285 PP~LikyLgkt~naW~~ai~~LE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DaL~eLY~~L~E~D~~~Gl 2364 (2426)
||||+||+||+||+||++|.+||+++. +...++.+.++++.|||+|||++|+|+|||||+
T Consensus 2417 pp~Li~yl~kt~~~wh~~I~lLE~~~~--------------------~~~~~~~~~~~~~~dsl~elY~~L~E~Dm~~Gl 2476 (3550)
T KOG0889|consen 2417 PPHLIKYLGKTYNLWHTSIRLLEDHQS--------------------NKEMENTKGDESCLDSLAELYRSLNEEDMFYGL 2476 (3550)
T ss_pred CHHHHHHHhccchHHHHHHHHHHHHHH--------------------HHHhhhhhhhHHHHHHHHHHHHhhhHHHHHHHH
Q ss_pred HhhhcCchhhHHHHHHHHhccHHHHHHHHHHHHHhhhhcccCCCCCCCChhHHHHHHhhcCC
Q psy5930 2365 WQKNAKHKETLYALAYEQQGFYEQALKAYEVTIKKGLEEYANSPAPISHNSELRLREKQWLR 2426 (2426)
Q Consensus 2365 Wrrra~~~ET~~ALs~EQ~G~w~~AQ~~YE~a~~k~~~~~a~~~~~~~~esEy~LWEdhWi~ 2426 (2426)
|||||+|+||++|+||||+|+|++||+.||+||.| +++++.|++++||++||||||+
T Consensus 2477 wrrr~~~~eT~~a~s~eQ~G~~e~AQ~lyekaq~K-----a~~~~~~~~~~Ey~lWed~WI~ 2533 (3550)
T KOG0889|consen 2477 WRRRAKFPETMVALSYEQLGFWEEAQSLYEKAQVK-----AREGAIPYSESEYKLWEDHWIR 2533 (3550)
T ss_pred HHHhhccHHHHHHHHHHHhhhHHHHhhHHHHHHHH-----HhcccCCCCcHHHHHHHHHHHH
No 2
>COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=100.00 E-value=1.6e-39 Score=469.48 Aligned_cols=1175 Identities=17% Similarity=0.173 Sum_probs=706.1
Q ss_pred HHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhhhhhhhhHHHHHHHHhhhcCCCChHHHHH
Q psy5930 814 HMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAETLTVQSKALSEVTNELTRNITLPNDLLREQ 893 (2426)
Q Consensus 814 ~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~eL~s~n~~VR~~ 893 (2426)
++..+.-++.++++|...+++....+ ....+-.++...+.. .....-. +++.|..||..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~-------------------~k~~~~~-~~~~~~~~~~~ 60 (2105)
T COG5032 2 RLAQIIYALPSLLKDCFTEILLRKSD-VRSSLFDLLHVSFLD-------------------YKEKDER-LSNVNDLVRNS 60 (2105)
T ss_pred cchHHhhhhhhhccccccccccchHH-HHHHHHHHHHHHHHH-------------------HHHHHhh-hcchHHHHHhh
Confidence 46778899999999999999998776 776666666544322 1111111 89999999999
Q ss_pred HHHHHHHHHHHhCCchhhccccchhhhhccCCCCccccccCchhhhHhhhhhhhhhcccCCCccccCcchhhHHHHHHHH
Q psy5930 894 SMYLLQVFAETQGKSVVQVMEPHKDVLADIIPPKKLLIRNHSANAQIGLMEGNTFCQSLTPRLFTTDMSIHEHSSFFQEI 973 (2426)
Q Consensus 894 aq~~L~~lae~t~~~v~ell~p~k~~Ll~~I~~Kpl~lRalpf~~QIG~idaitfcl~L~p~~l~~~~~~~el~rll~E~ 973 (2426)
+|+.+..++..++ +...+-|.++++++|+|.| + ||+|++. ||+++|.+||.++.+.
T Consensus 61 ~~~~~~~~~~~~~--~~~~~l~~~~~~~s~~f~~-~--~~~~~~~-i~~~~~~~~~~~~~~~------------------ 116 (2105)
T COG5032 61 TQSLLNTISNLIK--IVKFVLPLKSFFLSPIFAK-L--RALPMTK-ILCISADTYCLSLSIK------------------ 116 (2105)
T ss_pred hhhhhhhhhhhhh--HHHHHHHHHHhhccHHHHH-H--hccchhH-Hhhhhhhhhhhcccch------------------
Confidence 9999999999988 9999999999999999999 8 9999999 9999999999998764
Q ss_pred HHhhccCchhh---hcCCCCCCccccchHHHHHHHHHHhhhcCCchhhHHHHHHHHhhcCCCHHHHHHHHHHHHHHHccC
Q psy5930 974 TNICESSDQAL---MKLPCYKPISSLVPLRKAAMRALASWHYVPNCSQKIFNTLFAALERPNPELQEAAFQAMKTFVNGS 1050 (2426)
Q Consensus 974 l~LadadD~~l---~k~~~~k~~~~lv~LRv~ci~lL~~~~~~~~~~~rIi~vfFKsL~s~s~ei~~aA~~gLk~vL~~~ 1050 (2426)
+++ +|+++ .+......+..+.++| +..++.+.....|.+-.-+-+|+.+++..+++..+|.++++..+.++
T Consensus 117 -~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~e~ 190 (2105)
T COG5032 117 -ALA--DDESLTTILKTIRELLSKFLLRLR---LLFLFIGLLAQKFSEAQSKLFFKLLLSILKEILSDAYEALLNDLLEN 190 (2105)
T ss_pred -hhh--ccHHHhHHHHHHHHHhHHHHHHHH---HHHHHHHHHhhhhhHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHhh
Confidence 222 44443 1222222255556666 66666666666666655555599999999999999999999999885
Q ss_pred -CCChhhHHHhhHHHHhhhcCCCCCCHhHHHHHHHhhhhCCCcccHHHHHHHHHHHHHhhhhhhhhhcCCCCCCcchhHH
Q psy5930 1051 -PIDLKSVYEVMKPLLLTLGDYRNLNLVTARKLSYIVQPFPSSFSEKLCEQLLVNLKNLFENIVAQKENPPKNSETEKII 1129 (2426)
Q Consensus 1051 -~~~~e~L~q~LRPiL~nLsD~k~Ltv~gLegLarLLeLL~nyFkveiG~KLLdHLk~~~e~~~~~~~~~~~~~~~~kii 1129 (2426)
+.+.+.+|+.++|+|+|..|+ +||+|++|.+.++|++.| .+........|+.
T Consensus 191 ~~~~~~~~~~~l~~~l~~~~~~-------------------~~F~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~ 243 (2105)
T COG5032 191 LKSLKETLQNRLLPLLFNISDG-------------------NYFKVEIGRKLLDHLNAL--------GQILDCQKIAKIT 243 (2105)
T ss_pred cccchHHHHHHHHHHHHhhcCc-------------------cceeccccccchhhHHHh--------hhhhhccchhhhh
Confidence 555666666699999999999 999999999999999999 2344555667777
Q ss_pred HHHHHhhccCchhHHhhHHHHHHHHHHHHHhcCCCCCCCCcchHHHHHhhCcHHHHHHhhcccCCCchhHHHHHHHHhhC
Q psy5930 1130 VVIIGIFKESPAAKAQFIEPLISLILENEHALSIGPYSPYREPLVKYLLRYPTETLQSMLSEIHMKDPLWRNFFVYLIKH 1209 (2426)
Q Consensus 1130 ~aIinIFHLLP~aa~~Fle~Lv~~Vl~lE~~L~~~~~SPfR~PL~kfLnRyp~e~~~~Fl~~~~l~~~~~~~~f~~il~~ 1209 (2426)
.+ ||.+|+.+.+|++.+..++. ....+++|+|.+.|+++++.+.+++|... ...-+++.-+..
T Consensus 244 ~~----~~~~~~~~~~F~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~k~~~~~------~~~~~~~~~i~~ 306 (2105)
T COG5032 244 KS----FRSLPVIIKKFLNLLLIKVS-------YYLPSFFRLSLLSYLDHFETDLFKTFLVT------SCFLFFVDEICK 306 (2105)
T ss_pred hh----hcCChhHHHHHHHHhhhHhe-------eeccchhhhhhhHhhcCcchhHHHHHHhh------heeeeeeccccC
Confidence 77 99999999999999988887 77889999999999999999999999932 155677888999
Q ss_pred CCCHHHHHHHHHhhHHHHHHHHhhcCCCCCCCcchHHHhHHHHHHHHHHHHHH--hcCchhhhcChhHHHHHHHHhhchH
Q psy5930 1210 QEGKCFRDALQTQFVDRLILYTFSAINPNCTNLTTAEKLEMQYIGIRLVSILI--KLDTKWLSSQNQLISVMQKIWCDDE 1287 (2426)
Q Consensus 1210 ~~a~~Lr~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~~l~--k~~~~WL~~~~~~v~~L~~~w~~~~ 1287 (2426)
+++..+.+.+... ...+.. ..... ..+ .+.+- ... ...-+|-..+++.+.....--....
T Consensus 307 ~~~~~~~e~~~~~-~~~~~~--~~~~~----~~~----------~~~~~-~~~~~~~~fd~~~~~~~~~~~~~~~~~~~~ 368 (2105)
T COG5032 307 PESEHLAEEVSEK-LSKFLT--IEIID----SFP----------EIRIS-ALSSLLVIFDYHLALPDAVRLLFGESNDKV 368 (2105)
T ss_pred cccccchHHHHHH-HHHHHh--hhccc----ccH----------HHHHH-HHhccccccCccccCHHHHHhhhHHHHHHH
Confidence 9999999988887 676764 11111 111 11111 111 1111343333333221111000000
Q ss_pred HHHhhcccccccccccchHHHHHHHHHHHHhhCCCchh-hHHHHHHHHhhccCCCchHHHHHHHhhhcCCCCHHHHHHHH
Q psy5930 1288 YLQRHRNVENISYVHWKEPKLLVKILLHYFSHHRHIID-LLFFILRAVTERLLPDFTFLREFLETTVAQTYSIEWKRKAF 1366 (2426)
Q Consensus 1288 ~~~r~~~~~~~~~~~~~~~~~l~~i~l~yl~~~~~~~d-lLF~ll~~~~~~~~~d~~fl~~F~~~~V~~~~s~e~kr~il 1366 (2426)
+...... + .....|++..+.++- -+|..+.....-...- +-...|.. .-
T Consensus 369 f~~~~~~--------------~-~~~~~~~~v~~~~~~p~~~~~l~~~~~~l~~~-~~~~~~~~--------------~~ 418 (2105)
T COG5032 369 FLISELA--------------L-DSTGRLLRVLPARVLPSLFEFLLSLLTVLKIS-GLILEFEI--------------SA 418 (2105)
T ss_pred HHHHHHH--------------H-HhhhhhhhccHHhhhhHHHHHHHHhhhhhhhc-chHHHHHH--------------HH
Confidence 0000000 0 111122222221111 1222221110000000 00000000 00
Q ss_pred HHHHHHhhccCCCHHHHHHH--HHHHHhhHhhHhhhcCCCcccccCCCCCCcccccchhHHHHHHHHh-cCCCCCCCCcc
Q psy5930 1367 LRFLELFKLALVSQELKAKI--LQLVLIPCLTVCFERGEGDKLIGGTGLPEDEDNKNANLVNEFIAKI-ISPITESPPVF 1443 (2426)
Q Consensus 1367 ~~fl~~f~~~~~~~~~k~~~--L~~iv~P~L~~~f~~~~~~~~i~~~~~~~~~~~~~~~~v~~~~~ki-~~~~~~~~~~~ 1443 (2426)
....++|.+ .++..+... .-+.+.|-..-.+ +......+.+-. ..... .....
T Consensus 419 ~~~~~~i~~--~~~l~~~~~~~~~~~~l~~~~d~~---------------------~~~~~~~~~~l~~~~~~~-~~~~~ 474 (2105)
T COG5032 419 QLLCNLIRS--SNQLLTSLISPYFLFILPKCIDSS---------------------NSEISYRVENLGELKDIL-GLDRI 474 (2105)
T ss_pred HHHHHHHhh--hHHhhhhhcchhHHhhhhHhhccc---------------------cHHHHHHHHHHHHHHHHh-hhhhc
Confidence 001111110 000000000 0111111111000 000111110000 00000 00000
Q ss_pred CCChhHHHHHHHHHHHHHhhcccccccccccchhhhcccchhcccCCcccCCCCCCChhhhHHHHHHHHHHHHhhccCcc
Q psy5930 1444 VISDNVRILLLQMCCLIVEQSYHYVYNVSQGKILVNKAKPLIMFAWQLSLLGKNFVDPATRYHGHLLLAHMIAKFGVSQR 1523 (2426)
Q Consensus 1444 ~~~D~lrieLLQLstlLvk~~~~~i~~~~~~~~l~~~rK~lIkFaW~~i~l~~~~~D~~~K~~Ayvlia~fI~~f~~P~K 1523 (2426)
...-....-+.+.+..+ ..-+ .......+..+++++ ..+.. .|...| ++.+|.+
T Consensus 475 ~~~~~~~~~l~~~~~~~-~~~~------~~~~~~~~~~~~l~~---~~~~~----~l~~~~------------~~~~p~~ 528 (2105)
T COG5032 475 TDYQALSLRLIIVSIQL-RSFV------FKREAINQIFKQLAS---IVIKP----FLDYPK------------RLDLPIK 528 (2105)
T ss_pred cHHHHHhhhHhHHHHHH-hhcc------chhhHHHHHHHHHHH---hhhhh----hhhhHH------------HhCccee
Confidence 00001111111111111 1100 023345566666766 32222 343333 9999999
Q ss_pred hhhHhhHHhhhhcCcchHHHHHHHHHhhcCCCCCCCC----CchhhHHHHHHHHHhccCCChhhHHHHHHHHhcCCccch
Q psy5930 1524 VVVQVFLGLLRAHASEVRPIVRQALEILTPAFPGRVD----DGQRMLLVYTKKILVEEGHSNPQLSHVLTLIVKHYKVYY 1599 (2426)
Q Consensus 1524 IVlQVfvaLLra~q~E~R~LVrqALDIL~P~Lp~R~~----~~~~~w~~~tkkiL~EEgh~~~Ql~hI~qlIVRH~dlFY 1599 (2426)
|+..++++++ ..+++.+..|+.|+|- ..+.+.+ +..+ |.+-+-.+ |..++++.+-.|+|.|.
T Consensus 529 I~~~~~~~~~-~~~~~~~~~v~~~i~~---~~~~~~~~~s~~~~~-~~~~~~~l---------~~~~~~~~~~~~~~~~~ 594 (2105)
T COG5032 529 IVTVVYVALL-RRPTEKLSGVLGSIDK---YSHIESEEMSSSDFP-WTKNPVGL---------QLLAVYGFIRSIDDLYF 594 (2105)
T ss_pred EEEeecchhh-hHHHHHHHHHHHHhhH---HHHHHHhcccccCCh-hHhcchhh---------HHHHHhccccccchhhh
Confidence 9999999999 8899999999999998 4444422 2222 55544444 58889999999999999
Q ss_pred hhhhhhHHHHHHHHhhhCCCCCc-chhhHHHHHHHHHHHHhhhhhhhhhhccCCCCCCCCCCcccccccccCCCCCCCCc
Q psy5930 1600 PVRHGLIQQMIASMQRLGFSSSA-MDHKKLSVELADVIIKWELQRVKEEAEGTSGGKAIQEPPRKKMALESFAPGESSMK 1678 (2426)
Q Consensus 1600 ~~R~~fvp~mInsl~kLg~~~n~-~E~r~LAiDL~elIi~WE~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1678 (2426)
.++.+ .+++.|....+..+. . . ..|+.++...+.|+...-+... + .-.....
T Consensus 595 ~~~~~---~l~~~l~~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~-----------~-~~~~i~~---------- 647 (2105)
T COG5032 595 TVSDP---TLIEILKLPVLSIVHSA-I-IEAIMLIKLSLGSESSQFEDLN-----------P-SFLYIFS---------- 647 (2105)
T ss_pred hhhhH---HHHHHhhhHHhhcccCc-h-HHHHHHHHHHHHhhhccccccC-----------c-hHHHHHH----------
Confidence 99998 899999998765444 4 6 9999999999999854322110 0 0000000
Q ss_pred cCCCCCCCCcchhhH-HHHHHHHHHHHhccCCCCCCCCCcccccccCCchhHHHHHHHHHHHHhcCCCCCCCCccccch-
Q psy5930 1679 YDIPTASKPIEKVHA-DAVINFLARLSCQVSDLPPNLSSSMQSQVIQTPGEMLARRCVSLIRMALKPEVWSHQNTEFKL- 1756 (2426)
Q Consensus 1679 ~~~~~~~~~i~~~~~-d~vvnfLiR~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~r~l~LLk~~L~p~~W~~~~v~vkl- 1756 (2426)
+ -..... --..++|-.+.-...+.. .+ --..+......++.. |.. ..+.+
T Consensus 648 ------n--~~~~~i~~~~~~~l~~~~~~~~~~~---------------~~--~~~~i~~~~~~~~~~-~~~--~~~~~~ 699 (2105)
T COG5032 648 ------N--NSISDILFYFQNFLELIVIAFFPLI---------------RS--EIIGIVLISSLFSKT-WIL--LKLLLI 699 (2105)
T ss_pred ------h--ccHhHHHHHHHHHHHHHHHhhccch---------------HH--HHHhHHHHHHHHHHh-hhh--hHhhHH
Confidence 0 000000 112333333332222210 11 112344444444433 652 33433
Q ss_pred hhHHHhhccCCCCCccHHHHHHHHHHHHHHHhcCChhHHHHhhHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHhcCCCC
Q psy5930 1757 TWLDKVLSSIDQPTANLGNISIALELLTLLITILDEGQILHIIKPLQRGLVACISSS-ITKVIRLVHALLCRLMSTFPTE 1835 (2426)
Q Consensus 1757 ~~feK~L~~~d~~~~n~~~~~naLevL~il~~~~~~~~il~nl~~lq~lL~kcl~~~-n~~i~~~l~~ll~rll~~~p~~ 1835 (2426)
++|++.....+. +.-.....+-.+.+.+. + ++.+. ...+.. +.++..++..
T Consensus 700 ~~i~~~~~~~~~---e~~~~~~~~~~~~~~l~------------------~-~~~~~~~s~~~~------~~i~~~~~~~ 751 (2105)
T COG5032 700 AFISKLISALQG---ELKMLAPTLFTLFLVLV------------------E-RYLDVEYSSVSF------KLLLVILVYF 751 (2105)
T ss_pred HHHHHHHHHhcc---chhhhHHHHHHHHHHHH------------------H-HhhhhhHHHHHH------HHHHhhhccc
Confidence 477777654221 11111111111111111 1 00000 000111 2222222211
Q ss_pred CCCCCccCchhhHHHHHHHHHHHHHhhhccccCCCCCCcchHHHHHHHHHHHhhhCchhhhHhhHHHHHHHHHHHHHhhc
Q psy5930 1836 PISSNVASKREELDHLYVCVSKVIYEGLSNYEKNPTATCSTLYGTVMMLKAACMNHPAYVDRFILEFMRVIQRMAREHIA 1915 (2426)
Q Consensus 1836 ~~~~~~~~~~~e~~~f~~~l~~~i~e~L~~~~~~~~~~~~~~~~~l~lL~~~~~~~p~~iD~~l~~lmk~l~kl~keHl~ 1915 (2426)
. ...+...-.....+.....+...+.+. .+.+ +...-.+-.++.+++.+++++++|+.+++. |..
T Consensus 752 ~-----~~l~~~~~~~l~~i~~~~e~~~~~l~~-----~~~i--~~~~~f~~~~n~~~~~~~l~~~l~~~l~~~---~~l 816 (2105)
T COG5032 752 G-----GNLESLVLLILDLIVMLVEYTELGLQE-----SIFI--ERLSQFFKFKNLSENASRLLPPLMDNLSKS---HEL 816 (2105)
T ss_pred C-----hhHHHHHHHHHHHHHHHhhhhccccHH-----HhHH--HHHHHHHHhhhhHHHHHHHHHHHHHHHhhh---HHH
Confidence 0 000000001111111111111111100 1111 112223344677899999999999999998 333
Q ss_pred cCCCCCCc--cchHHHHHHHHHHHhHhhhcCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhccccCCCCCCC
Q psy5930 1916 TSTADAPQ--QVGGELLIYCLDLVKTRFCSMSQETRKQFIGTIILGLIDKTPDIKVMKAIIKMTEEWLKVNKVEQNNVPN 1993 (2426)
Q Consensus 1916 ~~~~~~~~--~~~~~ll~~~leLl~~Rv~~lg~d~Rr~fls~l~~~LiekS~d~~ll~~Il~iv~~Wv~~~~~~~~~~Pt 1993 (2426)
........ .....+....++.+..++..|| +++|+|.+.+.+ |++++...+.|...+.+.+.|.+ .+.++|
T Consensus 817 ~~~~~~~~~~l~~~~~~~~~~~fi~~~~~~l~-~~~~~~~~~l~~-l~~~~~k~~~~~~~l~~~~~~~~-----~~~~~~ 889 (2105)
T COG5032 817 RCVSEDDVSALLIQLLTDRVICFIPVINSSLG-DSRRIFLSLLAQ-LLDDSLKEESLPYNLNVDRGTDL-----REFFQT 889 (2105)
T ss_pred HhhhHhhHHHHHHHHhhhhhhhhhhhHHHhhH-HHHHHHHHHHHH-Hhhcccccccchhhcceeeceec-----cccccC
Confidence 21111000 0001122233334446777999 999999998777 99999999999999999999975 357999
Q ss_pred hhHHHHHHHHHHHHHhh-cCccHHHHHHHHHHHHhcCCcccCchhhhchhHHHhhccCCCChHHHHHHHHHHhhhhccCH
Q psy5930 1994 LKEKCIILVKLMHFVEK-RFPDLNTMFLEIVLYVYMDENLKNSELVTKLEPAFLSGLRCSNPALRAKFFQLLNGSIRRLL 2072 (2426)
Q Consensus 1994 lKEKa~lL~KM~~fe~r-~~~~L~~~flelV~~Iy~d~~~~~tElt~rLE~aFL~Glrs~d~~iR~kF~~i~d~sl~~~l 2072 (2426)
.++|+.++. |..+++. ..+.|. +.+.+...+...... .++.|+ .....|+.+.|.|+...
T Consensus 890 ~~~~~~v~~-~~~~~~~~~~~~~~--~~~~~~~~~~q~~~~----------~~~~~~-----~~~~~~~~l~~~s~l~~- 950 (2105)
T COG5032 890 VKSKAEVLS-MLPFVQSILFEAWN--RVDFLLKDFWQEELD----------NLLVAL-----LKELPFMALRDCSILSD- 950 (2105)
T ss_pred hHHHHHHHH-HHHHHHHHhHHHHH--HHHHhhhHHHHHHHH----------HHHHHH-----HhccchHHhhhcchhHH-
Confidence 999999999 8888654 444455 777777776644332 778888 44448999999998887
Q ss_pred HHHHHHHhhhcCCCccCCcccHHHHH---HHHHhhhccccccccccccCCCCCccccccccCCchhhhhhhhhhhccccc
Q psy5930 2073 HDRLLYIFSSQNWEPMGPHYWLKQCI---ELILVSAISSSKIKLAEETGVLPNISSVISLAEDPVERENYFNVVLNAADL 2149 (2426)
Q Consensus 2073 ~~RL~YIi~~QnWe~lad~~WLkqal---~LLL~~~~~~~~i~l~~~~~~lp~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 2149 (2426)
++|.++.+.|.+....+|+.+.- .++...... ...+++........ ...
T Consensus 951 ---~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~s~~~---------~~~~~~~~~~~~~~------~~~---------- 1002 (2105)
T COG5032 951 ---LYFMLGRELWNSVSFECWLELMNSYKRLLIKSLKS---------KLHLPTIPILILQM------LLD---------- 1002 (2105)
T ss_pred ---HHhhccHHHHhHHhHHHHHHHhhhhhHHHHHhHHH---------HhhcCCCCchhhhh------hhh----------
Confidence 89999999999999999999986 555544322 11111111110000 000
Q ss_pred cCCCCCCccchhhhhhhcccccccccchhhhhchHHHHHHHHHHHHHHhhccchhhhHHHHHHHhhcChHHHHHHHHHhH
Q psy5930 2150 KTEPNLNGENILESLEEYEFDVDEFGNCRIQQLSREDLLNKQNKFLENAREYNTSDLLVSLAQLCHLDTHLAEKVWLDMF 2229 (2426)
Q Consensus 2150 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~h~~fl~~~~~~~~~dil~pL~~L~~~D~~lA~~lWv~lF 2229 (2426)
. .+..+ ...|..+.-.+.....+ +..++...+. ..+|+.|..+|
T Consensus 1003 ----~---------------------------~n~~e-~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~ 1046 (2105)
T COG5032 1003 ----S---------------------------KNLTE-FTEHQLKNLPLPSLSIG-FYESLCSFLA---KLLHDEELYFF 1046 (2105)
T ss_pred ----h---------------------------cchhh-hhhhhhheecchhhhhh-HHHHHHHHHH---HHhHHHHHHhc
Confidence 0 00000 01111111112222222 4444444444 99999999999
Q ss_pred HHHhhcCCHHHHHHHhhhhHhhhccccccccccCCCChHHHHHHHhhhcCCCCCCChHHHHHHhhhcCcHHHHHHHHHHH
Q psy5930 2230 PQMWSILSETQQQNLTDEIIPFIVSGIHVVQKDVHPSSINTIYESLAHCNPPLPIKPAIMTYLGKAQGLWHRVTLSLEKM 2309 (2426)
Q Consensus 2230 p~iW~~L~~~eq~~l~~~li~lLsk~~H~rQ~~~~pnviqtlLegi~~c~p~i~lPP~LikyLgkt~naW~~ai~~LE~~ 2309 (2426)
|.. ..+.+.++|+..+|.+|.+.+|| +.....+..+|.-. |+..+|+++.+++||.-..+++..
T Consensus 1047 ~~~-----------~~~si~t~ls~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~~~~~l~~~~~~l~~~~~~~~~~ 1110 (2105)
T COG5032 1047 PLL-----------FVSSLETLLSVNYHINQLDLRPN-ILKHFGSFVRFQLK----PHLVKYLQRWYEALNRYFELLSKG 1110 (2105)
T ss_pred ccc-----------hHHHHHHHHhhhhhhhhhhhccC-cchhhhhhhHHhhh----HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 988 77899999999999999999999 88888888877642 999999999999999999999873
Q ss_pred HHhhhhhhhhcccCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHhcCccHHHHHHHhhhcCchhhHHHHHHHHhccHHHH
Q psy5930 2310 AVEGLLKQNRMQNRAPSVADCYDFEPDHAPQQQDIIDQLAEMYSALREEDMWFGLWQKNAKHKETLYALAYEQQGFYEQA 2389 (2426)
Q Consensus 2310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DaL~eLY~~L~E~D~~~GlWrrra~~~ET~~ALs~EQ~G~w~~A 2389 (2426)
. . ...+.....+....+...++|..|.+.|+++|.|++| ++.||..|.+|+|.|.|..|
T Consensus 1111 ~-~-------------------~~~~~~~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~r-~~~~~~~~~~~~~~~~~~~~ 1169 (2105)
T COG5032 1111 D-R-------------------LFAISFTKLRNVDALGKLELYSSLAEIDMFLSLHRRR-KLLETLVATAYEQVGEWYKA 1169 (2105)
T ss_pred c-c-------------------hhHHHHhhhhhhhHHHHHHHHHHHHHHhhhhccCcch-hhhhHHHHHHHHHHHhHHHH
Confidence 1 1 1111122334455677899999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHhhhhcccCCCCCCCChhHHHHHHhhcCC
Q psy5930 2390 LKAYEVTIKKGLEEYANSPAPISHNSELRLREKQWLR 2426 (2426)
Q Consensus 2390 Q~~YE~a~~k~~~~~a~~~~~~~~esEy~LWEdhWi~ 2426 (2426)
|++||.++.| ++.+..+++ .||..|+++|++
T Consensus 1170 q~~~e~~~~k-----~~~~~~~~s-~~~~~~~~~~~~ 1200 (2105)
T COG5032 1170 QQLYEVAQRK-----ARSKEFPFS-LQYLYWHINDID 1200 (2105)
T ss_pred HHHHHHHhhh-----cccccCchh-hHHHHHcccchh
Confidence 9999999999 777788887 999999999984
No 3
>KOG0889|consensus
Probab=100.00 E-value=1.2e-33 Score=392.07 Aligned_cols=1876 Identities=8% Similarity=-0.116 Sum_probs=0.0
Q ss_pred CCCcCcccccccccccccccchhhHHHHHHHHHHhhcCCCChHHHHHHHHHhhcccCCCCCchhHHHHHHHHHHHHHHHH
Q psy5930 1 MSQLFEEDFQLGSGWTTHESLRPLVYSTLADLVHHVRQLLPMSDLIKAVHLFSKNIHDETLPTTIHTMSCKLLLNLVDFI 80 (2426)
Q Consensus 1 id~Llde~vLiG~g~t~~e~LRplays~lADliHhvR~~L~~~qi~~~v~~~~~~lhD~~l~~s~q~ms~kLllnLve~i 80 (2426)
||.++++.+..|.|-+ +.+-|++| ++.+||.+......-.+... +...+.|+-..-...+||.+.++.+.+.+.
T Consensus 892 i~~~~e~~~~n~~~~~-~~~~~~~a----~~~~~~~~l~~~~~a~~~~e-lr~~a~~~~~~il~~f~~~~~~~~~~~~~~ 965 (3550)
T KOG0889|consen 892 IDLRLECCEINLDLTE-RYKSQDYS----DRSIFVNALISLFYATSCKE-LRDEAQDFLEAILRHFALHGVVLYTGSNQL 965 (3550)
T ss_pred HHHhhHhhhccccccc-cccccchh----HHHHHHHHHHHHHHHHhhHH-HHhhhHHHHHHHHHHHHHHHHHHhhcchhc
Q ss_pred HhcChhhhhhccCCCchhHHHHHHHHHHHH---HHHHHHHHhhhHHHHHHHhhhhcCCCCCCCCCCCCCCCCCCCCCccC
Q psy5930 81 RTKNQAEIEQGRIGDNIGQELLERMLETMV---LKFKTIAKLQLPVLTAKAKTQLALPAPELPSTTEDVKPVVNPQTNLI 157 (2426)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~r~lL~~il~~~v---~Kf~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (2426)
+.....+......+-.. .-+|-.|.+++. ..+......-+..+.......-..+...-.
T Consensus 966 ~~~~~~~~~~~~~~lD~-~i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~----------------- 1027 (3550)
T KOG0889|consen 966 KHSNFGSNLQYKKMLDP-STFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFK----------------- 1027 (3550)
T ss_pred cccccccccccccccCH-HHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhc-----------------
Q ss_pred CCCccccCCcccCCCccCCCCCCCCCCCccchHHHHHHHHhhhHHHhhccccccCCCCCCCCCCCCCCCCCCchhHHHHH
Q psy5930 158 DSPAKTTAGVEKQKPKLGISNSPAANYNVNDCRSIVKILICGVKTVTMGLAASKVNASGGEGPTTPPFGQFQPKDTKVYI 237 (2426)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~r~l~k~l~~g~kti~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 237 (2426)
+-=+.+|+..+.+++.+=.|.-+. +....-.-.....-...+-
T Consensus 1028 ----------------------------lpi~~~l~~k~~~lCy~~~wy~k~---------gG~~gI~~l~~~~~~~~l~ 1070 (3550)
T KOG0889|consen 1028 ----------------------------LPMFEYLLEKLCHLCYDSTWYAKD---------GGVNGIKCLIESMPSLWLL 1070 (3550)
T ss_pred ----------------------------cchHHHHHHHHHHHhccHhHHHHc---------CCCceeeeehhhchHHHHH
Q ss_pred HHHHHHHhhccccccCCCCCCCCCCcccCCccccccCChHHHHHHHHHHHHHHccChhhHHHHHHhhHHHHHHHHhhccc
Q psy5930 238 RLVKWALKALDVYTLNPSSSSLLPNNLQRTPLQQASRTKEEKEVLEHFAGVFSLMTPQTFREIFASTIDYMVDRMAHNYT 317 (2426)
Q Consensus 238 ~lf~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eeke~le~fa~vF~~ld~~~F~Ei~~~~i~~l~e~~~~n~~ 317 (2426)
+....-++|+-++-....+ +.+++++.+.+|..+|...--.+ .+...-++...+..
T Consensus 1071 d~~~d~~~~l~fvl~d~~~-----------------e~~~~~~~~~~~~l~~ll~~~~~-------~~~~~~~~~~~~~~ 1126 (3550)
T KOG0889|consen 1071 DFQVDILKALFFVLKDTES-----------------EVSSLPLDEAKDILMDILRVIFI-------DELAEEERAKSAMN 1126 (3550)
T ss_pred HHHHHHhhhHHHhhcCCcc-----------------ccccchHHHHHHHHHHHHHHHHH-------HhhhhHHHHHHHHH
Q ss_pred HHHHhHHhhcCCCChhhHHHHHHHHHHHHhhhcCCCCccchhHHHHHHHHHhhhcccCCCCCcccccchHHHHHHHHHHH
Q psy5930 318 LQVISNSFLVTRDTSPVFATVLVEYLLEHMEEMGNGNVERSNLCLKLFKLVFGSVSFYPAENEHMLRPHLHQIVNRSMEL 397 (2426)
Q Consensus 318 L~~i~q~fL~~~~~s~~F~~ill~fL~~~l~~lg~~~~~~~~~~lrLfkl~F~sv~~~~~~nE~vl~phl~~ii~~~~~~ 397 (2426)
+++.....|+|+.+ .+......+|-..++..|. ..++++.|+++++ .+..|+..++.+..+|....|...+-+
T Consensus 1127 ~~~~lv~eL~npN~--~VR~~~~~~L~~i~~~s~~---~v~~L~~p~K~~l--l~p~f~k~lr~~p~~~qig~vd~~~fC 1199 (3550)
T KOG0889|consen 1127 VFSPLVLELFNPNS--DVREFSQKLLRLISELSGK---SVVKLLEPFKDVL--LSPIFKKPLRALPFTIQIGHLDAITFC 1199 (3550)
T ss_pred HHHHHHHHHcCCch--HHHHHHHHHHHHHHHHcCC---cHHHHHHHHHHHH--hccccccccccCCHHHHhhhHHHHHHH
Q ss_pred HHhhcCchhHHHHHHHHHHhhcCCchhhHhhhHHHHHHHHHHHHHHhhhcCccchhhhHHhhhhhccccccccccCCcch
Q psy5930 398 AMTAKEPYNYFLLLRALFRSIGGGSHDLLYQEFLPLLRNLLQGLNSLQSGLHKQQMKDLFVELCLTVPVRLSSLLPYLPM 477 (2426)
Q Consensus 398 a~~a~ep~~Y~~LLR~lFRSiggg~fe~LYkeilPLLp~lLe~Ln~Ll~~~~~~~~RdL~VELCLTVPvRLS~LLPyL~~ 477 (2426)
++..++|.+|+..|+.+||.++++.-...|+++. +++......++. .+.++++.++|+++.|+++|+|.++++||...
T Consensus 1200 ~~l~p~~f~~~~~l~~l~~~~~~La~~~~~~~~~-i~k~~~~k~~~~-l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~k 1277 (3550)
T KOG0889|consen 1200 LSLGPCLFDFTEELYRLKRFLIALADAEEDELAT-IQKTSDYKNSSS-LVRLRVACIKLLAACMKLSDFRTPQHAELREK 1277 (3550)
T ss_pred HHcCCcccCchHHHHHHHHHHHHhhhhhhhhhhh-hhcccccccccc-cccchhHHHHHHHHHHhcccccchhhhhhhhH
Q ss_pred hhHHHHHHhcCCchhHHhhhhhhhhhhccCCcchhhhccchHHHHHHHHHHhhcCCCCchhhHHHHHHhhccCCCccccc
Q psy5930 478 LMDPLVSALNGSSTLISQGLRTLELCVDNLQPDFLYDHIQPVRADLMQALWRSLRSPNEQVAHVAYRVLGKFGGGNRKMM 557 (2426)
Q Consensus 478 LM~PLV~AL~~~~eLvsqGLRTLElcVDNLtpdfLdp~~~pV~~elm~ALw~~Lkp~~~~~~~~a~RILGKLGGrNR~~L 557 (2426)
.|-+++.+|.|.+..+++|+++.+.||||.++.+.+..++++++-+|.+||+|.+ ...+.+-.++-||+++...
T Consensus 1278 ii~v~fk~l~~~~~Ei~~~~~~~l~~v~~~~~~~~ke~lq~~lrplL~~l~d~~~------lsv~~l~~ls~l~~ll~~~ 1351 (3550)
T KOG0889|consen 1278 IIAVFFKSLYKRSSELIEVALEGLRKVLAQDVKLPKELLQSHLRPLLMNLSDHNN------LSVPGLEGLSRLLRLLINY 1351 (3550)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhhhhccccccHHHHHhhHHHHHHhhhHhhh------hhHHHHHHHHHHHHHHHHH
Q ss_pred ccCCCCccccccCCCCeEEEEecCCCcccccchhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhcccCCCChhHHHh
Q psy5930 558 IEPQKLDYNIRRSNGPAVVVHFPEHQKTINLSVEKAIDVAITVLKNPAVDMFYRKQGWKVVKGYIISSMNLSDNRSTIQK 637 (2426)
Q Consensus 558 ~~p~~L~~~~~~~~~~~~~~~f~~~~~~~~lpl~~~i~~A~~~l~~~~~d~~yr~~A~~~l~~~l~~~l~~~~~~~~~~~ 637 (2426)
-. ..+-.+-..--...+...+-+..... ++.+.+.......+..||...+...+.+....+...+....+
T Consensus 1352 f~-~e~~rkll~hl~~~~~~~~~~y~~~~-------l~~~~~~~i~~~~i~~f~~lp~~~~~~~~~Ll~~v~~~e~~L-- 1421 (3550)
T KOG0889|consen 1352 FK-VEIGRKLLQHLKKWLEDEVLDYLSGA-------LKAGPEMKIIVVIINLFHLLPPAADKFLDELLLCVVLLEEVL-- 1421 (3550)
T ss_pred HH-HHHHHHHHHhhHHhhhHHHHHHHhhh-------hccCccchhhhHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH--
Q ss_pred hhcCCCCCCCCCCCCcccccCChhHHHHHHHHHHHHHHHhcchhHHHhHHHHHHHHHHHHHHHHHHhhcCCCCCCccccc
Q psy5930 638 LFSHPSFGNTESSQGTMYKYADPTIRNTHQNALTGIFMVYLIKELRKDSLLYTVLVVRHYTLVAITQQTGPFPLYGKSAL 717 (2426)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~f~a~~~~~l~~~a~~f~~~v~rhf~l~~i~~~~~~~~~~~~~~~ 717 (2426)
.........+.-............+....+ .+.-..++--...-...+......+|.......+...++.+......
T Consensus 1422 -~~~~~sp~r~pl~kfl~r~~~~tv~~f~~~--~~~~~~~~~f~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~ 1498 (3550)
T KOG0889|consen 1422 -RKEENSPFREPLLKFLNRFANPTVDYFLAQ--LDEPDLYRMFVYALRIDDLLPLREVLAKEWLEFYTLLDPEISSYTVP 1498 (3550)
T ss_pred -HHhcCChhhhHHHHHHHHccCchHHHHHHH--cchHHHHHHHHHHHcccchhHHHHHHhhhHHHHHHhccCccCccccc
Q ss_pred ccCCCChHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHhhCCchhhcchhhHHHHHHHHHHhccCchhhhhHhHHH
Q psy5930 718 LEGTMDPLVLIDAIAVILGHEDKELCKPGYIALKCIMETATCITGSIENACNLPLMEYLAERMCNLCYERAWYAKLGGCY 797 (2426)
Q Consensus 718 ~~~~ld~~vl~DAi~~~l~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~p~~~~L~~rf~~~Cy~~~w~~K~gG~~ 797 (2426)
..++..+++....++.+ + ++..+.+.+.||...|+++.|||
T Consensus 1499 ------------------------------------~~~~~~~~~~v~~i~~~-v-k~~~e~~~s~~~iv~~l~~v~~~- 1539 (3550)
T KOG0889|consen 1499 ------------------------------------NMASDIQFQMVPLISTM-V-KNDDEWLLSSQFIVLALRRIWKL- 1539 (3550)
T ss_pred ------------------------------------hhhcchhhhhhHHHHHH-H-hccHHHhhccchHHHHHHHHhhh-
Q ss_pred HHHHHHHhchHHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCC-CCCchhhhhhhhhhHHHHH
Q psy5930 798 AIKFFYNTMAIKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIK-EPVDAETLTVQSKALSEVT 876 (2426)
Q Consensus 798 gi~~l~~~~~~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 876 (2426)
..++-..+...-++..++ +..|+.++++.-++ .+...+.+....-.|.++.+ -...-+....++++....-
T Consensus 1540 -~~~~~~~~~~~~l~~~~~--~~~lL~~~~~~~~~-----~~l~~~il~~~~~~~~~d~~~l~~~l~~~vi~~~~~~~kr 1611 (3550)
T KOG0889|consen 1540 -ESILERLFLEDRLCLNSI--VKCLLEYLSLNKYD-----LELLLQILSFFEGNDNIDLTFLKEFLEHEVIKSYSYNMKR 1611 (3550)
T ss_pred -hHHHHHHHHHHHHHHHHH--HHHHHHHHhhcccc-----HHHHHHHHHHHhccCCccHHHHHHHHHHHHhhcCCHHHHH
Q ss_pred HHHhhhcCCCChHHHHHHHHHHHHHHHHhCCchhhccccchhhhhccCCCCccccccCchhhhHhhhhhhhhhcccCCCc
Q psy5930 877 NELTRNITLPNDLLREQSMYLLQVFAETQGKSVVQVMEPHKDVLADIIPPKKLLIRNHSANAQIGLMEGNTFCQSLTPRL 956 (2426)
Q Consensus 877 ~~lv~eL~s~n~~VR~~aq~~L~~lae~t~~~v~ell~p~k~~Ll~~I~~Kpl~lRalpf~~QIG~idaitfcl~L~p~~ 956 (2426)
..++.-+.++|..++..-.++..+..-..- ....+++| .....|++ .-+...+++..+..++ .+-
T Consensus 1612 ~~f~~~l~~f~~~~~~~~~~~~~l~~li~p---~l~~~~~k-ge~~~i~~------~d~~~~~~~~~~~~~~-----~~~ 1676 (3550)
T KOG0889|consen 1612 NLFLVFLNLFGDKDLGADHKAQVLQGLINP---CLNYSFEK-GETNEILG------PDIVKKIDEVFVNKPL-----DPS 1676 (3550)
T ss_pred HHHHHHHhhcCCcccchhHHHHHHHHhhhH---HHhhcccc-cccccccC------CccchhhhhhhccCCC-----chh
Q ss_pred cccCcchhhHHHHHHHHHHhhccCchhhhcCCCCCCccccchHHHHHHHHHHhhhcCCchhhHHHHHH----HHhhcCCC
Q psy5930 957 FTTDMSIHEHSSFFQEITNICESSDQALMKLPCYKPISSLVPLRKAAMRALASWHYVPNCSQKIFNTL----FAALERPN 1032 (2426)
Q Consensus 957 l~~~~~~~el~rll~E~l~LadadD~~l~k~~~~k~~~~lv~LRv~ci~lL~~~~~~~~~~~rIi~vf----FKsL~s~s 1032 (2426)
..++ +..|+...-|+....++.+..... .|..-|+....|++..|-..|.-+.| |=.-+..+
T Consensus 1677 ~~~d----d~~~i~~lqL~t~~ik~ase~i~d----------~~~~li~f~w~cl~~eD~~~k~~~~~~i~~fI~~~~~~ 1742 (3550)
T KOG0889|consen 1677 YAYD----DGLRIELLQLATLLIKYASEHIHD----------QRKSLIKFAWNCLKSEDPMIKQSAYLVIAHFIERFQIP 1742 (3550)
T ss_pred hhcc----chHHHHHHHHHHHHHhccHHHHHH----------hhHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhccC
Q ss_pred HHHHHHHHHHHHHHHccCCCChhhHHHhhHHHHhhhcCCCCCCHhHHHHHHHhhhhCCCcccHHHH--HHHHHHHHHhhh
Q psy5930 1033 PELQEAAFQAMKTFVNGSPIDLKSVYEVMKPLLLTLGDYRNLNLVTARKLSYIVQPFPSSFSEKLC--EQLLVNLKNLFE 1110 (2426)
Q Consensus 1033 ~ei~~aA~~gLk~vL~~~~~~~e~L~q~LRPiL~nLsD~k~Ltv~gLegLarLLeLL~nyFkveiG--~KLLdHLk~~~e 1110 (2426)
++||---+.+|-. .-.+|--+.-.+++ .-|+|.+++-.+- .++.-|.|+..-
T Consensus 1743 ~kiV~qvf~~Llk-----T~~~E~R~~vk~aL---------------------dil~p~l~~rm~~g~~~~~~w~kkiiv 1796 (3550)
T KOG0889|consen 1743 PKIVLQVFVALLK-----TYQPEARAIVKQAL---------------------DILTPALPARMELGDSKIPIWVKKIIV 1796 (3550)
T ss_pred hhHhHHHHHHHhh-----cccHHHHHHHHHHH---------------------HHhchhhhhhccCcccchHHHHHHHHH
Q ss_pred hhhhhhcCCCCCCcchhHHHHHHHhhccCchhHHhhHHH----HHHHHHHHHHhcCCCCCCCCcchHHHHHhhCcHHHHH
Q psy5930 1111 NIVAQKENPPKNSETEKIIVVIIGIFKESPAAKAQFIEP----LISLILENEHALSIGPYSPYREPLVKYLLRYPTETLQ 1186 (2426)
Q Consensus 1111 ~~~~~~~~~~~~~~~~kii~aIinIFHLLP~aa~~Fle~----Lv~~Vl~lE~~L~~~~~SPfR~PL~kfLnRyp~e~~~ 1186 (2426)
++...+.-+++||+++=....-|.+. +..++-.+++..-+...+++ =-|-+-|=+.
T Consensus 1797 -------------ee~~~i~~~~~i~qliv~h~~~~~~~r~~fv~~lv~~~~rl~~~pn~~~e-------~r~laiel~~ 1856 (3550)
T KOG0889|consen 1797 -------------EEGHSISQLLHVYQLIVRHSDLFYSSRVRFVTPLVNSLPRLGSMPNSNSE-------NRKLALELAG 1856 (3550)
T ss_pred -------------HhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhcCCCccchH-------HHHHHHHHHH
Q ss_pred HhhcccCCCchhHHHHHHHHhhCCCCHHHHHHHHHhhHHHHHHHHhhcCCCCCCCcchHHHhHHHHHHHHHHHHHHhcCc
Q psy5930 1187 SMLSEIHMKDPLWRNFFVYLIKHQEGKCFRDALQTQFVDRLILYTFSAINPNCTNLTTAEKLEMQYIGIRLVSILIKLDT 1266 (2426)
Q Consensus 1187 ~Fl~~~~l~~~~~~~~f~~il~~~~a~~Lr~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~~l~k~~~ 1266 (2426)
-+. .|-+.=.-+--.+..-..-++.-.. ....+...+...+....+.+
T Consensus 1857 ~ii--------~We~~rl~~~~~e~~~~~~~e~~~~-~s~~~~r~~~~~~~~~~~~~----------------------- 1904 (3550)
T KOG0889|consen 1857 VII--------KWELKRLKDTDSETTLFSDSESLMS-LSASIKRGFSAIPKRYTPGP----------------------- 1904 (3550)
T ss_pred HHH--------HHHHHHhhhhhhhhhhcccchhhhh-hhhcchhHHHhccCCCCCCc-----------------------
Q ss_pred hhhhcChhHHHHHHHHhhchHHHHhhcccccccccccchHHHHHHHHHHHHhhCCCchhhHHHHHHHHhhccCCCchHHH
Q psy5930 1267 KWLSSQNQLISVMQKIWCDDEYLQRHRNVENISYVHWKEPKLLVKILLHYFSHHRHIIDLLFFILRAVTERLLPDFTFLR 1346 (2426)
Q Consensus 1267 ~WL~~~~~~v~~L~~~w~~~~~~~r~~~~~~~~~~~~~~~~~l~~i~l~yl~~~~~~~dlLF~ll~~~~~~~~~d~~fl~ 1346 (2426)
.....+.............=+. +..=+.|++..-.+.|.. ...+..+.+
T Consensus 1905 -------------------~~~~~~~~~~l~~~~~~~~w~~--~~~kL~~~eK~lt~~d~~----------~~~~~~~~~ 1953 (3550)
T KOG0889|consen 1905 -------------------TNHEGRCVNLDLVSLRPETWPS--VNVKLNYFEKVLTDMDLP----------ENNLGNYAN 1953 (3550)
T ss_pred -------------------chhhhhHHhHHHHhccccchhh--cchHHHHHHHHhcCCCCc----------ccHHHHHHh
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhhHhhHhhhcCCCcccccCCCCCCcccccchhHHH
Q psy5930 1347 EFLETTVAQTYSIEWKRKAFLRFLELFKLALVSQELKAKILQLVLIPCLTVCFERGEGDKLIGGTGLPEDEDNKNANLVN 1426 (2426)
Q Consensus 1347 ~F~~~~V~~~~s~e~kr~il~~fl~~f~~~~~~~~~k~~~L~~iv~P~L~~~f~~~~~~~~i~~~~~~~~~~~~~~~~v~ 1426 (2426)
.+..-.|+.+-.+.+++....+.+..+.++..+. +.+-.+..++|++...|+.+ |.+..+.......+.
T Consensus 1954 ~ld~l~~v~~~~~~~~i~~n~~~vq~~le~cl~~--~~~~v~~~~~~~l~~~~~~~---------~~~~~e~e~~~~~v~ 2022 (3550)
T KOG0889|consen 1954 GLDVLSVVLENVPKEWIRENLNQIQALLEKCLKS--GNLKVTEALNQLLSRLLSIF---------PNTHESLELLYQVVS 2022 (3550)
T ss_pred hHHHHHHHHhcCCcHHHHHhHHHHHHHHHHHHhc--cChhHHHHHHHHHHHHHHhc---------CCCchhHHHHhhHHH
Q ss_pred HHHHHhcCCCCCCCCccCCChhHHHHHHHHHHHHHhhcccccccccccchhhhcccchhcccCCcccCCCCCCChhhhHH
Q psy5930 1427 EFIAKIISPITESPPVFVISDNVRILLLQMCCLIVEQSYHYVYNVSQGKILVNKAKPLIMFAWQLSLLGKNFVDPATRYH 1506 (2426)
Q Consensus 1427 ~~~~ki~~~~~~~~~~~~~~D~lrieLLQLstlLvk~~~~~i~~~~~~~~l~~~rK~lIkFaW~~i~l~~~~~D~~~K~~ 1506 (2426)
..+..... ....+.++....+++++.+.+ +|...++ +.+.+|+.++|. |....-.++++..
T Consensus 2023 ~~i~~~l~--------s~~~~~~~~~~~~~~~~~~l~----~~~~~~~----~~~drLl~~~~r-~~~k~a~dhl~~~-- 2083 (3550)
T KOG0889|consen 2023 KLIDELLT--------SVTTVPLQLASNVFGTLTLLK----TLCSNNP----DYLDRLLPGFMR-CFSKAAKDHLSCG-- 2083 (3550)
T ss_pred HHHHhhhh--------heecccccchHHHHHHHHHHH----HHhccCH----HHHHHHHHHHHH-HHHHHHHhhhhhh--
Q ss_pred HHHHHHHHHHhhccCcchhhHhhHHhhhhcCcchHHHHHHHHHhhcCCCCCCCCCchhhHHHHHHHHHhccCCChhhHHH
Q psy5930 1507 GHLLLAHMIAKFGVSQRVVVQVFLGLLRAHASEVRPIVRQALEILTPAFPGRVDDGQRMLLVYTKKILVEEGHSNPQLSH 1586 (2426)
Q Consensus 1507 Ayvlia~fI~~f~~P~KIVlQVfvaLLra~q~E~R~LVrqALDIL~P~Lp~R~~~~~~~w~~~tkkiL~EEgh~~~Ql~h 1586 (2426)
.+..++.=++..++|.+++.++++.+.-.++-.+ +.+-.+|..+.|+-.+..+-.+|+|+|+.+.|+=+.+.
T Consensus 2084 ----~~~~~~~~~a~k~~~ell~~slel~~~ri~~l~~--~~r~~~~~~~l~~lieks~d~~i~~~il~~~~~wi~~~-- 2155 (3550)
T KOG0889|consen 2084 ----AVLNSQLGDASKGRSELLIKSVELGRERIFYLGD--SRRKSLSQSVLVLLIEKSSDASILRCILKMLKEWIMND-- 2155 (3550)
T ss_pred ----HHHHhhcccchhhHHHHHHHHHHHhHHHHHHHHH--HHhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHHHhcc--
Q ss_pred HHHHHhcCCccchhhhhhhHHHHHHHHhhhCCCCCc-chhhHHHHHHHHHHHHhhhh------hhhhhhccCCCCCCCCC
Q psy5930 1587 VLTLIVKHYKVYYPVRHGLIQQMIASMQRLGFSSSA-MDHKKLSVELADVIIKWELQ------RVKEEAEGTSGGKAIQE 1659 (2426)
Q Consensus 1587 I~qlIVRH~dlFY~~R~~fvp~mInsl~kLg~~~n~-~E~r~LAiDL~elIi~WE~~------r~~~~~~~~~~~~~~~~ 1659 (2426)
.+++| .+.+...+.+|++.+.|.+ +. ..+...+..+++++.+|+-. |.+..-.
T Consensus 2156 ---~~~~t----~~ek~all~km~~~~~krf---~~~~L~~~~l~~v~~vy~~~~~~~tE~t~rle~~Fl---------- 2215 (3550)
T KOG0889|consen 2156 ---DSFPT----VREKLALLLKMLTFEDKRF---EDNELLAEFLDLVFTIYRDEIFSNTELTARLERAFL---------- 2215 (3550)
T ss_pred ---ccccc----hHHHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHH----------
Q ss_pred CcccccccccCCCCCCCCccCCCCCCCCcchhhHHHHHHHHHHHHhccCCCCCCCCCcccccccCCchhHHHHHHHHHHH
Q psy5930 1660 PPRKKMALESFAPGESSMKYDIPTASKPIEKVHADAVINFLARLSCQVSDLPPNLSSSMQSQVIQTPGEMLARRCVSLIR 1739 (2426)
Q Consensus 1660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~vvnfLiR~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~r~l~LLk 1739 (2426)
..-+..+...|+....-+ ...+.+++-..|+
T Consensus 2216 -----------------------~Glr~s~~~lR~kF~~i~--------------------------d~S~~~~~~~RL~ 2246 (3550)
T KOG0889|consen 2216 -----------------------LGLRSSDPGIRSKFFDIL--------------------------DSSLPRDLYSRLL 2246 (3550)
T ss_pred -----------------------hhhccCCccHHHHHHHHH--------------------------HhhcchhHHHHHH
Q ss_pred HhcCCCCCCCCccccchhhHHHhhccCCCCCccHHHHHHHHHHHHHHHhcCChhHHHHhhHHHHHHHHHHHhcCchhHHH
Q psy5930 1740 MALKPEVWSHQNTEFKLTWLDKVLSSIDQPTANLGNISIALELLTLLITILDEGQILHIIKPLQRGLVACISSSITKVIR 1819 (2426)
Q Consensus 1740 ~~L~p~~W~~~~v~vkl~~feK~L~~~d~~~~n~~~~~naLevL~il~~~~~~~~il~nl~~lq~lL~kcl~~~n~~i~~ 1819 (2426)
.++.++.|+.+ .++...++...+.....+..+..+++ ...-...+...-.+.....+..+.+|.-+++...
T Consensus 2247 yil~~q~W~~~-~~~~wikqa~~lL~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~s~~~~~~~~~~-- 2317 (3550)
T KOG0889|consen 2247 YILDSQDWEAI-SDVFWIKQALMLLLGTINEVKPISLY------PNSERVSPLSPSEEQEPSSVESVSKQSGSELVLS-- 2317 (3550)
T ss_pred HHhcccccccc-ccchHHHHHHHHHHHhhhccCCccCC------CCcccccCccccccccccccchhhhcccHHHHHH--
Q ss_pred HHHHHHHHHHhcCCCCCCCCCccCchhhHHHHHHHHHHHHHhhhccccCCCCCCcchHHHHHHHHHHHhhhCchhhhHh-
Q psy5930 1820 LVHALLCRLMSTFPTEPISSNVASKREELDHLYVCVSKVIYEGLSNYEKNPTATCSTLYGTVMMLKAACMNHPAYVDRF- 1898 (2426)
Q Consensus 1820 ~l~~ll~rll~~~p~~~~~~~~~~~~~e~~~f~~~l~~~i~e~L~~~~~~~~~~~~~~~~~l~lL~~~~~~~p~~iD~~- 1898 (2426)
++ ..+.++..+......+++++..+..++.+++.-...+
T Consensus 2318 -------~~---------------------------------~~~~~efl~~~~~~~~~~~l~~l~~i~~~~~~~a~~~w 2357 (3550)
T KOG0889|consen 2318 -------DF---------------------------------VKGHIEFLEANSEYRVADFLDPLLQIQHHDDKVAEKLW 2357 (3550)
T ss_pred -------HH---------------------------------HHHHHHhhhhhhhhhHHhhHHHHHHHHhcCHHHHHHHH
Q ss_pred ---hHHHHHHHHHHHHHhhccCCCCCCccchHHHHHHHHHHHhHhhhcCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHH
Q psy5930 1899 ---ILEFMRVIQRMAREHIATSTADAPQQVGGELLIYCLDLVKTRFCSMSQETRKQFIGTIILGLIDKTPDIKVMKAIIK 1975 (2426)
Q Consensus 1899 ---l~~lmk~l~kl~keHl~~~~~~~~~~~~~~ll~~~leLl~~Rv~~lg~d~Rr~fls~l~~~LiekS~d~~ll~~Il~ 1975 (2426)
.|.+.+.|.+=.+.-++....+--+...-.....|...+..++-..-.+.++++...--+..+.++++..-.+.|..
T Consensus 2358 ~~~Fp~~w~~l~~de~~~~~~~~i~flS~~~h~~q~~~~pnvln~~v~s~~~~~~~~~lpp~Li~yl~kt~~~wh~~I~l 2437 (3550)
T KOG0889|consen 2358 VGLFPIVWSSLSKDEIRNLAGSIIPFLSSGYHIKQQGCRPNVLNALVESLVKIVPPIELPPHLIKYLGKTYNLWHTSIRL 2437 (3550)
T ss_pred HHHHHHHHhhcCHhhhhcccchhccccccchhhhhhccchhHHHHHHHHHHhhccCCCCCHHHHHHHhccchHHHHHHHH
Q ss_pred HHHHHhhccccCCCCCCChhHHHHHHHHHHHHHhhcCcc--HHHHHHHHHHHHhcCCcccCchhhhchhHHHhhccCCCC
Q psy5930 1976 MTEEWLKVNKVEQNNVPNLKEKCIILVKLMHFVEKRFPD--LNTMFLEIVLYVYMDENLKNSELVTKLEPAFLSGLRCSN 2053 (2426)
Q Consensus 1976 iv~~Wv~~~~~~~~~~PtlKEKa~lL~KM~~fe~r~~~~--L~~~flelV~~Iy~d~~~~~tElt~rLE~aFL~Glrs~d 2053 (2426)
+-..|... +.++ .+|..-.-..-.+ .+-+..|+.+.+|++.....++.+...+.++..|-|+|+
T Consensus 2438 LE~~~~~~---------~~~~-----~~~~~~~~dsl~elY~~L~E~Dm~~Glwrrr~~~~eT~~a~s~eQ~G~~e~AQ~ 2503 (3550)
T KOG0889|consen 2438 LEDHQSNK---------EMEN-----TKGDESCLDSLAELYRSLNEEDMFYGLWRRRAKFPETMVALSYEQLGFWEEAQS 2503 (3550)
T ss_pred HHHHHHHH---------Hhhh-----hhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhccHHHHHHHHHHHhhhHHHHhh
Q ss_pred hHHHHHHHHHHhhhhccCHHHHHHHHhhhcCCCccCCcccHHHHHHHHHhhhccccccccccccCCCCCccccccccCCc
Q psy5930 2054 PALRAKFFQLLNGSIRRLLHDRLLYIFSSQNWEPMGPHYWLKQCIELILVSAISSSKIKLAEETGVLPNISSVISLAEDP 2133 (2426)
Q Consensus 2054 ~~iR~kF~~i~d~sl~~~l~~RL~YIi~~QnWe~lad~~WLkqal~LLL~~~~~~~~i~l~~~~~~lp~~s~~~~~~~~~ 2133 (2426)
+--+..+...-+.+. |+...-.+|..|++...--.-.=+--++++ -..-++...+.... ..
T Consensus 2504 lyekaq~Ka~~~~~~----------------~~~~Ey~lWed~WI~Ca~eL~QWdvl~e~~--k~~~~~~llle~aW-rl 2564 (3550)
T KOG0889|consen 2504 LYEKAQVKAREGAIP----------------YSESEYKLWEDHWIRCASELQQWDVLTEFG--KHEGNYELLLECAW-RL 2564 (3550)
T ss_pred HHHHHHHHHhcccCC----------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH--hccCCceeeeehhc-cC
Q ss_pred hhhhhhhhhhhccccccCCCCCCccchhhhhhhcccccccccchhhhhchHHHHHHHHHHHHHHhhccchhhhHHHHHHH
Q psy5930 2134 VERENYFNVVLNAADLKTEPNLNGENILESLEEYEFDVDEFGNCRIQQLSREDLLNKQNKFLENAREYNTSDLLVSLAQL 2213 (2426)
Q Consensus 2134 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~h~~fl~~~~~~~~~dil~pL~~L 2213 (2426)
.+=.....+....+..-.....-.....+.+.-..-.... .-...+...+..+..+.++...+.++....-+.-|.++
T Consensus 2565 sdw~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~i~e~~~l~i~~w~~lP~~v~~~h~~lL~~~ 2642 (3550)
T KOG0889|consen 2565 SDWNDQKDALEQKAKSLSDVPGFRKELYDAFLALQKKNSN--GVGEFERLIGEAIQLAIREWRQLPERVNHGHVPLLQAF 2642 (3550)
T ss_pred CcchhHHHHHHHhhhccCCCCcHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHHHHHhCccccchhhHHHHHHH
Q ss_pred hhcChHHHHHHHHHhHHHHhhcCCHHHHHHHhhhhHhhhccccccccccCCCChHHHHHHHhhhcCCCCCCChHHHHHHh
Q psy5930 2214 CHLDTHLAEKVWLDMFPQMWSILSETQQQNLTDEIIPFIVSGIHVVQKDVHPSSINTIYESLAHCNPPLPIKPAIMTYLG 2293 (2426)
Q Consensus 2214 ~~~D~~lA~~lWv~lFp~iW~~L~~~eq~~l~~~li~lLsk~~H~rQ~~~~pnviqtlLegi~~c~p~i~lPP~LikyLg 2293 (2426)
|+.+.-.....|-.-++..| ...+...+..+.|...--|++.+.++-.-++.+.+-.|.+++.. +|-+.+
T Consensus 2643 QqivEl~Ea~~I~s~l~~~n-------~~n~~~~~~d~Ksil~~Wr~RlP~~~Dd~~~Wsdl~~WRq~~y~---~I~~~~ 2712 (3550)
T KOG0889|consen 2643 QQIVELQEAAQIYSDLNDGN-------VQNLDNKAQDIKSILQTWRDRLPNVWDDMNQWSDLITWRQHAYS---MINKAY 2712 (3550)
T ss_pred HHHHHHHHHHHHHHhccccc-------ccccchhHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHH---HHHHHh
Q ss_pred hhcCcHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCcchhhhHHHH--HHHHHHhcCccHHHHHHHhhhcCc
Q psy5930 2294 KAQGLWHRVTLSLEKMAVEGLLKQNRMQNRAPSVADCYDFEPDHAPQQQDIIDQ--LAEMYSALREEDMWFGLWQKNAKH 2371 (2426)
Q Consensus 2294 kt~naW~~ai~~LE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Da--L~eLY~~L~E~D~~~GlWrrra~~ 2371 (2426)
+.++.|+ ++-.. + +.-.|.++.+.+.++|.|-| +
T Consensus 2713 ~~~~~~~------~~~~n-----------------------------------s~~~~~Gyhe~A~~in~fakvAr---k 2748 (3550)
T KOG0889|consen 2713 LPLVPYK------QNASN-----------------------------------SNNLYRGYHELAWAINRFAKVAR---K 2748 (3550)
T ss_pred cccchhh------hccCC-----------------------------------cchHHHhHHHHHHHHHHHHHHHH---h
Q ss_pred hhhHHHHHHHHhccHHHHHHHHHHHHHhhhhcccCCCCCCCChhHHHHHHhhcCC
Q psy5930 2372 KETLYALAYEQQGFYEQALKAYEVTIKKGLEEYANSPAPISHNSELRLREKQWLR 2426 (2426)
Q Consensus 2372 ~ET~~ALs~EQ~G~w~~AQ~~YE~a~~k~~~~~a~~~~~~~~esEy~LWEdhWi~ 2426 (2426)
.++..+..+++.|.|.-++--|..|+.|.|++.......+ .|+.+|+|
T Consensus 2749 h~l~~vcl~~L~~iytlp~veiqdaF~K~req~~c~l~~~-------~e~~~gLe 2796 (3550)
T KOG0889|consen 2749 HGLPDVCLNQLAKIYTLPNVEIQDAFQKLREQAKCYLQNK-------NELKTGLE 2796 (3550)
T ss_pred cCChHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcCh-------HHHHHHHH
No 4
>KOG1824|consensus
Probab=97.70 E-value=0.41 Score=64.85 Aligned_cols=310 Identities=15% Similarity=0.226 Sum_probs=180.0
Q ss_pred hhHHHhHHHHHHH--------HHHHHHHHHHHhhcCCCCCCcccccccCCCChHHHHHHHHHhhcCCChhhhhHHHHHHH
Q psy5930 680 KELRKDSLLYTVL--------VVRHYTLVAITQQTGPFPLYGKSALLEGTMDPLVLIDAIAVILGHEDKELCKPGYIALK 751 (2426)
Q Consensus 680 ~~l~~~a~~f~~~--------v~rhf~l~~i~~~~~~~~~~~~~~~~~~~ld~~vl~DAi~~~l~~~~~~~~~~~~~~l~ 751 (2426)
++-+.-|..+... -++||+++.+|+- |- .....-..-+-|-|++++++++.++..+|..|+.
T Consensus 813 ~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGEl-gr---------~~~~s~~~e~~~~iieaf~sp~edvksAAs~ALG 882 (1233)
T KOG1824|consen 813 QKSKSLATKLIQDLQSPKSSDSIKVFALLSLGEL-GR---------RKDLSPQNELKDTIIEAFNSPSEDVKSAASYALG 882 (1233)
T ss_pred ccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhh-cc---------CCCCCcchhhHHHHHHHcCCChHHHHHHHHHHhh
Confidence 3444455555444 3699999999852 11 1111111237789999999999999999998886
Q ss_pred HHHHHHHHhhCCchhhcchhhHHHHHHHHHHhccCchhhhhHhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhcCCCc
Q psy5930 752 CIMETATCITGSIENACNLPLMEYLAERMCNLCYERAWYAKLGGCYAIKFFYNTMAIKWVYSHMFVFVKALLFVMMDLTG 831 (2426)
Q Consensus 752 ~~~~~~~~i~~~~~~~~~~p~~~~L~~rf~~~Cy~~~w~~K~gG~~gi~~l~~~~~~~wl~~~~~~ivraLlfvlkD~p~ 831 (2426)
.+-- |+-++ -+|| +++.+.. =-.+|.-++.+|..||+....
T Consensus 883 sl~v------gnl~~--yLpf-----------------------------il~qi~s--qpk~QyLLLhSlkevi~~~sv 923 (1233)
T KOG1824|consen 883 SLAV------GNLPK--YLPF-----------------------------ILEQIES--QPKRQYLLLHSLKEVIVSASV 923 (1233)
T ss_pred hhhc------CchHh--HHHH-----------------------------HHHHHhc--chHhHHHHHHHHHHHHHHhcc
Confidence 5511 22221 2232 2222200 024577889999999988777
Q ss_pred ccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhhhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhCCchhh
Q psy5930 832 EVSSGAIDEARRNLKQLIVLCATPIKEPVDAETLTVQSKALSEVTNELTRNITLPNDLLREQSMYLLQVFAETQGKSVVQ 911 (2426)
Q Consensus 832 e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~eL~s~n~~VR~~aq~~L~~lae~t~~~v~e 911 (2426)
+ +....+.+....+.+.|-.. ..-+|...-.||..+.- .+-.+
T Consensus 924 d---~~~~~v~~IW~lL~k~cE~~-------------------------------eegtR~vvAECLGkL~l---~epes 966 (1233)
T KOG1824|consen 924 D---GLKPYVEKIWALLFKHCECA-------------------------------EEGTRNVVAECLGKLVL---IEPES 966 (1233)
T ss_pred c---hhhhhHHHHHHHHHHhcccc-------------------------------hhhhHHHHHHHhhhHHh---CChHH
Confidence 6 33334444444445555321 11135555556665542 23333
Q ss_pred ccccchhhhhccCCCCccccccCchhhhHhhhhhhhhhcccCCCccccCcchhhHHHHHHHHHHhhccCchhhhcCCCCC
Q psy5930 912 VMEPHKDVLADIIPPKKLLIRNHSANAQIGLMEGNTFCQSLTPRLFTTDMSIHEHSSFFQEITNICESSDQALMKLPCYK 991 (2426)
Q Consensus 912 ll~p~k~~Ll~~I~~Kpl~lRalpf~~QIG~idaitfcl~L~p~~l~~~~~~~el~rll~E~l~LadadD~~l~k~~~~k 991 (2426)
|+-.-+..+ |.=..++---.+-|+.|-++.+|+-+. .-++-.+.+.+.+-...|-.
T Consensus 967 LlpkL~~~~-----------~S~a~~~rs~vvsavKfsisd~p~~id-----~~lk~~ig~fl~~~~dpDl~-------- 1022 (1233)
T KOG1824|consen 967 LLPKLKLLL-----------RSEASNTRSSVVSAVKFSISDQPQPID-----PLLKQQIGDFLKLLRDPDLE-------- 1022 (1233)
T ss_pred HHHHHHHHh-----------cCCCcchhhhhhheeeeeecCCCCccC-----HHHHHHHHHHHHHHhCCchh--------
Confidence 332222222 333344556678899999999997654 23466778888887666644
Q ss_pred CccccchHHHHHHHHHH-hhhcCCch------------------hhHHHHH----HHHhhcCCCHHHHHHHHHHHHHHHc
Q psy5930 992 PISSLVPLRKAAMRALA-SWHYVPNC------------------SQKIFNT----LFAALERPNPELQEAAFQAMKTFVN 1048 (2426)
Q Consensus 992 ~~~~lv~LRv~ci~lL~-~~~~~~~~------------------~~rIi~v----fFKsL~s~s~ei~~aA~~gLk~vL~ 1048 (2426)
-|.+++.++. ++++.|.. +.-.|.. =||+---..-++..+|+|||-..|.
T Consensus 1023 -------VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLLd 1095 (1233)
T KOG1824|consen 1023 -------VRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLD 1095 (1233)
T ss_pred -------HHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHHHHHHHHH
Confidence 3444444443 23333332 1122222 2888888888999999999998885
Q ss_pred c--CCCChhhHHHhhHHHHhhhcCCCCCCHhHHHHHHHhhhhCCCcccHHHHHHHHHHHHHhhh
Q psy5930 1049 G--SPIDLKSVYEVMKPLLLTLGDYRNLNLVTARKLSYIVQPFPSSFSEKLCEQLLVNLKNLFE 1110 (2426)
Q Consensus 1049 ~--~~~~~e~L~q~LRPiL~nLsD~k~Ltv~gLegLarLLeLL~nyFkveiG~KLLdHLk~~~e 1110 (2426)
. .+...-+. +--+-+.|.||--+-+-..--|+||.-|=|+---..+ +++.+-||+.+.
T Consensus 1096 scld~~dit~F---l~~~~~GL~DhydiKmlt~l~l~rLa~lcPs~Vlqrl-D~l~EpLr~t~~ 1155 (1233)
T KOG1824|consen 1096 SCLDRLDITEF---LNHVEDGLEDHYDIKMLTFLMLARLADLCPSAVLQRL-DRLVEPLRKTCT 1155 (1233)
T ss_pred hhhhhccHHHH---HHHHHhhcchhhHHHHHHHHHHHHHHhhCcHHHHHHH-HHHHHHHHHHhh
Confidence 4 23433333 4467789999976666666667777777665432222 445555555554
No 5
>KOG2171|consensus
Probab=96.30 E-value=9.9 Score=53.90 Aligned_cols=664 Identities=14% Similarity=0.136 Sum_probs=368.0
Q ss_pred ChhhHHHHHHHHHHHHh-hhcCCCCccchhHHHHHHHHHhhhcccCCCCCcccccchHHHHHHHHHHHHHhhcCchhHHH
Q psy5930 331 TSPVFATVLVEYLLEHM-EEMGNGNVERSNLCLKLFKLVFGSVSFYPAENEHMLRPHLHQIVNRSMELAMTAKEPYNYFL 409 (2426)
Q Consensus 331 ~s~~F~~ill~fL~~~l-~~lg~~~~~~~~~~lrLfkl~F~sv~~~~~~nE~vl~phl~~ii~~~~~~a~~a~ep~~Y~~ 409 (2426)
.-+.||.|++|-|..|+ +.|.. ..+.+|--.|...++ .+.|..++--+-++|..
T Consensus 52 ~~Rq~aaVl~Rkl~~~~w~~l~~--e~~~siks~lL~~~~-------~E~~~~vr~k~~dviAe---------------- 106 (1075)
T KOG2171|consen 52 QVRQLAAVLLRKLLTKHWSRLSA--EVQQSIKSSLLEIIQ-------SETEPSVRHKLADVIAE---------------- 106 (1075)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCH--HHHHHHHHHHHHHHH-------hccchHHHHHHHHHHHH----------------
Confidence 34789999999999762 33332 234555555555443 26666666666555554
Q ss_pred HHHHHHHhhcCCchhhHhhhHHHHHHHHHHHHHHhhhcCccchhhhHHhhhhhccccc-cccccCCcchhhHHHHHHhcC
Q psy5930 410 LLRALFRSIGGGSHDLLYQEFLPLLRNLLQGLNSLQSGLHKQQMKDLFVELCLTVPVR-LSSLLPYLPMLMDPLVSALNG 488 (2426)
Q Consensus 410 LLR~lFRSiggg~fe~LYkeilPLLp~lLe~Ln~Ll~~~~~~~~RdL~VELCLTVPvR-LS~LLPyL~~LM~PLV~AL~~ 488 (2426)
++|.++-++ -|.+|+.|=.=.++.+ +..|+.-+=+.-+||-- =..+-||+.-+-+=+.-.+..
T Consensus 107 ----ia~~~l~e~-----------WPell~~L~q~~~S~~-~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d 170 (1075)
T KOG2171|consen 107 ----IARNDLPEK-----------WPELLQFLFQSTKSPN-PSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTD 170 (1075)
T ss_pred ----HHHhccccc-----------hHHHHHHHHHHhcCCC-cchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccC
Confidence 444444431 2222332222222232 46677666665566644 345667888888888888865
Q ss_pred Cc-hhHHhhhhhhh---hhhccCCcchhhhccchHHHHHHHHHHhhcCCCCchhhHHHHHHhhccCCCcccccccCCCCc
Q psy5930 489 SS-TLISQGLRTLE---LCVDNLQPDFLYDHIQPVRADLMQALWRSLRSPNEQVAHVAYRVLGKFGGGNRKMMIEPQKLD 564 (2426)
Q Consensus 489 ~~-eLvsqGLRTLE---lcVDNLtpdfLdp~~~pV~~elm~ALw~~Lkp~~~~~~~~a~RILGKLGGrNR~~L~~p~~L~ 564 (2426)
++ .+-..++|++= .+.||=+. .-+.+++.+.-++..|-+.++--+.-.+..++..|--|-+.-=+++
T Consensus 171 ~s~~vr~~a~rA~~a~~~~~~~~~~--~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l------- 241 (1075)
T KOG2171|consen 171 PSSPVRVAAVRALGAFAEYLENNKS--EVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLL------- 241 (1075)
T ss_pred CcchHHHHHHHHHHHHHHHhccchH--HHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHH-------
Confidence 33 35555666554 44442111 2244555555555555555554444456667766655542211111
Q ss_pred cccccCCCCeEEEEecCCCcccccchhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHh---cccCCCCh--hHHHhh-
Q psy5930 565 YNIRRSNGPAVVVHFPEHQKTINLSVEKAIDVAITVLKNPAVDMFYRKQGWKVVKGYIIS---SMNLSDNR--STIQKL- 638 (2426)
Q Consensus 565 ~~~~~~~~~~~~~~f~~~~~~~~lpl~~~i~~A~~~l~~~~~d~~yr~~A~~~l~~~l~~---~l~~~~~~--~~~~~~- 638 (2426)
.=-+..+|.....+..++.-|.-.|..|.+||.++.-. +.....+. ..+..+
T Consensus 242 ----------------------~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l 299 (1075)
T KOG2171|consen 242 ----------------------RPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLL 299 (1075)
T ss_pred ----------------------HHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHH
Confidence 11245678888999999999999999999999886543 11111110 011111
Q ss_pred --hcCCCCCCCCCCCCcccccCChhHHHHHHHHHHHHHHHhcchhHHHhHHHHHHHHHHHHHHHHHHhhcCCCCCCcccc
Q psy5930 639 --FSHPSFGNTESSQGTMYKYADPTIRNTHQNALTGIFMVYLIKELRKDSLLYTVLVVRHYTLVAITQQTGPFPLYGKSA 716 (2426)
Q Consensus 639 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~f~a~~~~~l~~~a~~f~~~v~rhf~l~~i~~~~~~~~~~~~~~ 716 (2426)
..+.... +... ...+.+ ++ ...+.....+.+.+++. .| ++
T Consensus 300 ~~mte~~~D--~ew~----~~d~~d-ed----------~~~~~~~~A~~~lDrlA---~~---------L~--------- 341 (1075)
T KOG2171|consen 300 AMMTEEEDD--DEWS----NEDDLD-ED----------DEETPYRAAEQALDRLA---LH---------LG--------- 341 (1075)
T ss_pred HhcCCcccc--hhhc----cccccc-cc----------cccCcHHHHHHHHHHHH---hc---------CC---------
Confidence 1110000 0000 000000 00 00011111112222111 01 11
Q ss_pred cccCCCChHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHhhCCchhhcchhhHHHHHHHHHHhccCchhhhhHhHH
Q psy5930 717 LLEGTMDPLVLIDAIAVILGHEDKELCKPGYIALKCIMETATCITGSIENACNLPLMEYLAERMCNLCYERAWYAKLGGC 796 (2426)
Q Consensus 717 ~~~~~ld~~vl~DAi~~~l~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~p~~~~L~~rf~~~Cy~~~w~~K~gG~ 796 (2426)
...+- -++..++...+.|++-..|.+|..||..+.| |+.+.+. +.+..++.-.++.--+++-..|+|+|
T Consensus 342 --g~~v~-p~~~~~l~~~l~S~~w~~R~AaL~Als~i~E------Gc~~~m~--~~l~~Il~~Vl~~l~DphprVr~AA~ 410 (1075)
T KOG2171|consen 342 --GKQVL-PPLFEALEAMLQSTEWKERHAALLALSVIAE------GCSDVMI--GNLPKILPIVLNGLNDPHPRVRYAAL 410 (1075)
T ss_pred --hhheh-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHc------ccHHHHH--HHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 11122 2378999999999999999999999998877 5554433 36778888999999999999999999
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhhhhhhhhHHHHH
Q psy5930 797 YAIKFFYNTMAIKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAETLTVQSKALSEVT 876 (2426)
Q Consensus 797 ~gi~~l~~~~~~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 876 (2426)
.+|+-|.+++++..-+.|.-.+..||++.+.|.-.. . +...|-..+......|-++ .-...+..+.
T Consensus 411 naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~--r-V~ahAa~al~nf~E~~~~~-----------~l~pYLd~lm 476 (1075)
T KOG2171|consen 411 NAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNV--R-VQAHAAAALVNFSEECDKS-----------ILEPYLDGLM 476 (1075)
T ss_pred HHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCch--H-HHHHHHHHHHHHHHhCcHH-----------HHHHHHHHHH
Confidence 999999999999988899999999999988665432 2 3345555565555555432 1123577777
Q ss_pred HHHh-hhcCCCChHHHHHHHHHHHHHHHHhCCchhhccccchhhhhcc-------CCCCccccccCchhhhHhhhhhhhh
Q psy5930 877 NELT-RNITLPNDLLREQSMYLLQVFAETQGKSVVQVMEPHKDVLADI-------IPPKKLLIRNHSANAQIGLMEGNTF 948 (2426)
Q Consensus 877 ~~lv-~eL~s~n~~VR~~aq~~L~~lae~t~~~v~ell~p~k~~Ll~~-------I~~Kpl~lRalpf~~QIG~idaitf 948 (2426)
+..+ .=+.|.++.||++|..++..+|+..+.. ..||.++++.- -=.|-+ |.|-... +-++-.+.|
T Consensus 477 ~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~----F~pY~d~~Mp~L~~~L~n~~~~d~--r~Lrgkt-mEcisli~~ 549 (1075)
T KOG2171|consen 477 EKKLLLLLQSSKPYVQEQAVTAIASVADAAQEK----FIPYFDRLMPLLKNFLQNADDKDL--RELRGKT-MECLSLIAR 549 (1075)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhh----hHhHHHHHHHHHHHHHhCCCchhh--HHHHhhH-HHHHHHHHH
Confidence 7444 4456777799999999999999988743 33555555311 112333 5444444 555666666
Q ss_pred hcccCCCccccCcchhhHHHHHHHHH-HhhccCchh-----------------------------hhcCCCCCCc-----
Q psy5930 949 CQSLTPRLFTTDMSIHEHSSFFQEIT-NICESSDQA-----------------------------LMKLPCYKPI----- 993 (2426)
Q Consensus 949 cl~L~p~~l~~~~~~~el~rll~E~l-~LadadD~~-----------------------------l~k~~~~k~~----- 993 (2426)
-++ +-+|.++. +|+..++.+.- ...+.||.. +.+...++.-
T Consensus 550 AVG-ke~F~~~a---~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d 625 (1075)
T KOG2171|consen 550 AVG-KEKFLPLA---EELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSD 625 (1075)
T ss_pred Hhh-hhhhhHhH---HHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcC
Confidence 666 45566655 55544444442 122223321 0011111110
Q ss_pred --------------------cccchHHHHHHH-------HHH-hhhcC-CchhhHH---HH-HHHHhhcCCCHHHHHHHH
Q psy5930 994 --------------------SSLVPLRKAAMR-------ALA-SWHYV-PNCSQKI---FN-TLFAALERPNPELQEAAF 1040 (2426)
Q Consensus 994 --------------------~~lv~LRv~ci~-------lL~-~~~~~-~~~~~rI---i~-vfFKsL~s~s~ei~~aA~ 1040 (2426)
...+..|.+.+. +|. -|... ..|...+ .. +.+.....-...+..||.
T Consensus 626 ~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~ 705 (1075)
T KOG2171|consen 626 EEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAA 705 (1075)
T ss_pred chhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 012334433332 222 22211 2233322 22 234555556778888888
Q ss_pred HHHHHHHcc----CCCChhhHHH---hhHHHHh-hhc--CCCCCCHhHHHHHHHhhhhCC-Cccc--------HHHHHHH
Q psy5930 1041 QAMKTFVNG----SPIDLKSVYE---VMKPLLL-TLG--DYRNLNLVTARKLSYIVQPFP-SSFS--------EKLCEQL 1101 (2426)
Q Consensus 1041 ~gLk~vL~~----~~~~~e~L~q---~LRPiL~-nLs--D~k~Ltv~gLegLarLLeLL~-nyFk--------veiG~KL 1101 (2426)
+++=..+.- .+.-|..+.+ ..+|.++ ++. .-+......+++++-.++-.. ++.+ ..+..++
T Consensus 706 ~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~ 785 (1075)
T KOG2171|consen 706 ESMPQLLTCALKACQGGPEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGLLAQL 785 (1075)
T ss_pred HHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHH
Confidence 877666622 2233434444 4555444 333 246667788999999998776 4433 4567888
Q ss_pred HHHHHHhhhhhhhhhcCCC--CCCcc-----hhHHHHHHHhhccCc
Q psy5930 1102 LVNLKNLFENIVAQKENPP--KNSET-----EKIIVVIIGIFKESP 1140 (2426)
Q Consensus 1102 LdHLk~~~e~~~~~~~~~~--~~~~~-----~kii~aIinIFHLLP 1140 (2426)
++|.+.-.+........+. .+.+. .-+..++.+|+|.+=
T Consensus 786 l~~~~~~~~r~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~~l~ 831 (1075)
T KOG2171|consen 786 LQHFKRMQDRQEEDDEEDDDIEEEEDLDEQDAYLLDAISDILAALA 831 (1075)
T ss_pred HHHHHHHHhhhhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 9999888775433221111 11122 235566666666553
No 6
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=92.33 E-value=28 Score=46.23 Aligned_cols=385 Identities=17% Similarity=0.217 Sum_probs=209.7
Q ss_pred hhHHHHHHHHHHHHHHHhcchhHHHhHHHHHHHHHHHH-------HHHHHHhhcCCCCCCcccccccCCCCh-HHHHHHH
Q psy5930 660 PTIRNTHQNALTGIFMVYLIKELRKDSLLYTVLVVRHY-------TLVAITQQTGPFPLYGKSALLEGTMDP-LVLIDAI 731 (2426)
Q Consensus 660 ~~~~~~~~~ll~~~f~a~~~~~l~~~a~~f~~~v~rhf-------~l~~i~~~~~~~~~~~~~~~~~~~ld~-~vl~DAi 731 (2426)
...|++-.++...+..|-..+++ .+|+..+|+.= |=+.+.++..-+. +...|.- .-+++.|
T Consensus 295 eYVRnvt~ra~~vva~algv~~l----lpfl~a~c~SrkSw~aRhTgiri~qqI~~ll-------G~s~l~hl~~l~~ci 363 (975)
T COG5181 295 EYVRNVTGRAVGVVADALGVEEL----LPFLEALCGSRKSWEARHTGIRIAQQICELL-------GRSRLSHLGPLLKCI 363 (975)
T ss_pred HHHHHHHHHHHHHHHHhhCcHHH----HHHHHHHhcCccchhhhchhhHHHHHHHHHh-------CccHHhhhhhHHHHH
Confidence 44566666666666566555554 45888887531 2233333333221 1111110 1188999
Q ss_pred HHhhcCCChhhhhHHHHHHHHHHHHHHHhhCCchhhcchhhHHHHHHHHHHhccCchhh--hhHhHH------HHHHHHH
Q psy5930 732 AVILGHEDKELCKPGYIALKCIMETATCITGSIENACNLPLMEYLAERMCNLCYERAWY--AKLGGC------YAIKFFY 803 (2426)
Q Consensus 732 ~~~l~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~p~~~~L~~rf~~~Cy~~~w~--~K~gG~------~gi~~l~ 803 (2426)
-.+|.++..-+|-.+..++....+.+.- +|- --|. +.||- -|- ...||- .++.+++
T Consensus 364 ~~~l~D~~~~vRi~tA~alS~lae~~~P-ygi-------e~fd---~vl~p-----Lw~g~~~hrgk~l~sfLkA~g~ii 427 (975)
T COG5181 364 SKLLKDRSRFVRIDTANALSYLAELVGP-YGI-------EQFD---EVLCP-----LWEGASQHRGKELVSFLKAMGFII 427 (975)
T ss_pred HHHhhccceeeeehhHhHHHHHHHhcCC-cch-------HHHH---HHHHH-----HHHHHHhcCCchHHHHHHHhcccc
Confidence 9999999998887677777766663311 111 1111 22221 121 122222 2344445
Q ss_pred HhchHHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhhhhhhhhHHHHHHHHhhhc
Q psy5930 804 NTMAIKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAETLTVQSKALSEVTNELTRNI 883 (2426)
Q Consensus 804 ~~~~~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~eL 883 (2426)
--|.+.+.+.+--+..+-++.-+ +.|. ++-+..+..+.+.|....+.. ..+ +-.++.+|+
T Consensus 428 plm~peYa~h~tre~m~iv~ref-~spd-------eemkk~~l~v~~~C~~v~~~t--------p~~----lr~~v~pef 487 (975)
T COG5181 428 PLMSPEYACHDTREHMEIVFREF-KSPD-------EEMKKDLLVVERICDKVGTDT--------PWK----LRDQVSPEF 487 (975)
T ss_pred ccCChHhhhhhHHHHHHHHHHHh-CCch-------hhcchhHHHHHHHHhccCCCC--------HHH----HHHhhcHHh
Confidence 55566777666666555544433 2232 234445667777776442211 112 233445666
Q ss_pred CCCChHHHHHH--------HHHHHHHHHHhCCc--hhhccccchhhhhccCCCCccccccCchhhhHhhhhhhhhhcccC
Q psy5930 884 TLPNDLLREQS--------MYLLQVFAETQGKS--VVQVMEPHKDVLADIIPPKKLLIRNHSANAQIGLMEGNTFCQSLT 953 (2426)
Q Consensus 884 ~s~n~~VR~~a--------q~~L~~lae~t~~~--v~ell~p~k~~Ll~~I~~Kpl~lRalpf~~QIG~idaitfcl~L~ 953 (2426)
.+|--.=|.+. -..-..+|+.-|.+ +..+++++++. +.|. |.+ -.|.++-+---+
T Consensus 488 F~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v~~kil~~~~De------~ep~--r~m----~a~~vsri~~~l--- 552 (975)
T COG5181 488 FSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPRVSRKILEYYSDE------PEPY--RKM----NAGLVSRIFSRL--- 552 (975)
T ss_pred hchHHHhhhcccccccceeehhHHHHHHHcCChHHHHHHHhhccCC------cchh--hhh----hhHHHHHHHHhc---
Confidence 66543333322 13345677777764 45677777764 4444 754 445555443222
Q ss_pred CCccccCcchhhHHHHHHHHH-HhhccCchhhhcCCCCCCc---------cccch---------------HHHHHHHHHH
Q psy5930 954 PRLFTTDMSIHEHSSFFQEIT-NICESSDQALMKLPCYKPI---------SSLVP---------------LRKAAMRALA 1008 (2426)
Q Consensus 954 p~~l~~~~~~~el~rll~E~l-~LadadD~~l~k~~~~k~~---------~~lv~---------------LRv~ci~lL~ 1008 (2426)
+-..|++..+ .|++.-.+ |+++.+...-.=.+||-++ ..+-+ .|.-+..+.+
T Consensus 553 -g~~~~dErle--erl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~ 629 (975)
T COG5181 553 -GRLGFDERLE--ERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMG 629 (975)
T ss_pred -ccccccHHHH--HHHHHHHHHHHHhccccccEEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 2356774322 23443332 2333322221222344333 11111 2333332222
Q ss_pred hhh----cCCchh--hHHHHHHHHhhcCCCHHHHHHHHHHHHHHHcc---C--CCChhhHHHhhHHHHhhhcCCCCCCHh
Q psy5930 1009 SWH----YVPNCS--QKIFNTLFAALERPNPELQEAAFQAMKTFVNG---S--PIDLKSVYEVMKPLLLTLGDYRNLNLV 1077 (2426)
Q Consensus 1009 ~~~----~~~~~~--~rIi~vfFKsL~s~s~ei~~aA~~gLk~vL~~---~--~~~~e~L~q~LRPiL~nLsD~k~Ltv~ 1077 (2426)
.-- .+.++. .+.-.+++.+|-..-||+..---.|++...+- . +-|-..++-+|.|||.| .|+|.-.+
T Consensus 630 sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrn--kh~Kv~~n 707 (975)
T COG5181 630 SLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRN--KHQKVVAN 707 (975)
T ss_pred HHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhh--hhHHHhhh
Confidence 110 122332 36777899999999999876666666555432 2 23557788899999987 79999999
Q ss_pred HHHHHHHhhhhCCCcccH----HHHHHHHHHHHHhhhh
Q psy5930 1078 TARKLSYIVQPFPSSFSE----KLCEQLLVNLKNLFEN 1111 (2426)
Q Consensus 1078 gLegLarLLeLL~nyFkv----eiG~KLLdHLk~~~e~ 1111 (2426)
++.-+...-.+-|.|-.+ .||=.|+|-||.|-..
T Consensus 708 ti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKe 745 (975)
T COG5181 708 TIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKE 745 (975)
T ss_pred HHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999999999987 4999999999999753
No 7
>KOG1242|consensus
Probab=92.04 E-value=42 Score=45.27 Aligned_cols=411 Identities=14% Similarity=0.098 Sum_probs=215.7
Q ss_pred HHHHHHHHHHHHHHHhcchhHHHhHHHHHHHHHHHHHHHHHHhhcCCC--CCCcccccccCCCChHHHHHHHHHhhcCCC
Q psy5930 662 IRNTHQNALTGIFMVYLIKELRKDSLLYTVLVVRHYTLVAITQQTGPF--PLYGKSALLEGTMDPLVLIDAIAVILGHED 739 (2426)
Q Consensus 662 ~~~~~~~ll~~~f~a~~~~~l~~~a~~f~~~v~rhf~l~~i~~~~~~~--~~~~~~~~~~~~ld~~vl~DAi~~~l~~~~ 739 (2426)
.++++.+.+..+.... -......+...+.++++.-.+..+.+.. -...-.+.+...+-+.-|+|++..+..+.+
T Consensus 112 ~q~~~~~~l~~~~~~~----~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~ 187 (569)
T KOG1242|consen 112 VQRAVSTCLPPLVVLS----KGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKK 187 (569)
T ss_pred HHHHHHHHhhhHHHHh----hccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccc
Confidence 3455555444433322 2233344666677777766665544322 000011233334566779999999999997
Q ss_pred hhhh-hHHHHHHHHHHHHHHHhhCCchhhcchhhHHHHHHHHHHhccCchhhhhHhHHHHHHHHHHhchHHHHHHHHHHH
Q psy5930 740 KELC-KPGYIALKCIMETATCITGSIENACNLPLMEYLAERMCNLCYERAWYAKLGGCYAIKFFYNTMAIKWVYSHMFVF 818 (2426)
Q Consensus 740 ~~~~-~~~~~~l~~~~~~~~~i~~~~~~~~~~p~~~~L~~rf~~~Cy~~~w~~K~gG~~gi~~l~~~~~~~wl~~~~~~i 818 (2426)
+..+ +.+..+... +...+| ...-|.+-.++...+.+-++..=+.+-+..-+.+.++..++.-=+.......
T Consensus 188 ~~~~re~~~~a~~~----~~~~Lg----~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsl 259 (569)
T KOG1242|consen 188 SALNREAALLAFEA----AQGNLG----PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSL 259 (569)
T ss_pred hhhcHHHHHHHHHH----HHHhcC----CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhh
Confidence 7655 434333332 223445 2344677777788888888999999999999999999999887777777777
Q ss_pred HHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhhhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHH
Q psy5930 819 VKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAETLTVQSKALSEVTNELTRNITLPNDLLREQSMYLL 898 (2426)
Q Consensus 819 vraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~eL~s~n~~VR~~aq~~L 898 (2426)
+.++.+. |.=+ ...+-+.+. .+--|.. ..-+-.+.+++-.+..-+.+..+-||++++.||
T Consensus 260 l~~l~~~-kWrt-------K~aslellg-~m~~~ap-----------~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l 319 (569)
T KOG1242|consen 260 LGSLLEA-KWRT-------KMASLELLG-AMADCAP-----------KQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETL 319 (569)
T ss_pred HHHHHHH-hhhh-------HHHHHHHHH-HHHHhch-----------HHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHH
Confidence 7777775 2222 112222232 2222211 111234677788888889999999999999999
Q ss_pred HHHHHHhCCchhhccccchhhhhccCCCCccccccCchhhhHhhhh---hhhhhcccCCCccccCcchhhHHHHHHHHHH
Q psy5930 899 QVFAETQGKSVVQVMEPHKDVLADIIPPKKLLIRNHSANAQIGLME---GNTFCQSLTPRLFTTDMSIHEHSSFFQEITN 975 (2426)
Q Consensus 899 ~~lae~t~~~v~ell~p~k~~Ll~~I~~Kpl~lRalpf~~QIG~id---aitfcl~L~p~~l~~~~~~~el~rll~E~l~ 975 (2426)
..+.+....+. |.++--.|++-+-.. - +.. +-++| +-||.-...+| +.+-+.-+++..++
T Consensus 320 ~~~~svidN~d---I~~~ip~Lld~l~dp-~--~~~-----~e~~~~L~~ttFV~~V~~p------sLalmvpiL~R~l~ 382 (569)
T KOG1242|consen 320 LKFGSVIDNPD---IQKIIPTLLDALADP-S--CYT-----PECLDSLGATTFVAEVDAP------SLALMVPILKRGLA 382 (569)
T ss_pred HHHHHhhccHH---HHHHHHHHHHHhcCc-c--cch-----HHHHHhhcceeeeeeecch------hHHHHHHHHHHHHh
Confidence 99998887665 444444554333221 1 111 11111 11222222121 11111222332222
Q ss_pred hhccCchhhhcCCCCCCccccchHHHHHHHHHHhhhcCCc------hhhHHHHHHHHhhcCCCHHHHHHHHHHHHHHHcc
Q psy5930 976 ICESSDQALMKLPCYKPISSLVPLRKAAMRALASWHYVPN------CSQKIFNTLFAALERPNPELQEAAFQAMKTFVNG 1049 (2426)
Q Consensus 976 LadadD~~l~k~~~~k~~~~lv~LRv~ci~lL~~~~~~~~------~~~rIi~vfFKsL~s~s~ei~~aA~~gLk~vL~~ 1049 (2426)
-.+++ +- |.+|+-.=-.|--++| |-..++--+-+.++-.-||+...|..+|-..+..
T Consensus 383 eRst~---------------~k--r~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~ 445 (569)
T KOG1242|consen 383 ERSTS---------------IK--RKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLER 445 (569)
T ss_pred hccch---------------hh--hhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHH
Confidence 22111 11 5555443223333322 3335566666677777899999999999544432
Q ss_pred CCCChhhHHHhhHHHHhhhc-CCCCCC--HhHHHHHHHhhhhCCCcccHHHHHHHHHHHHHhhhhhhhhhcCCCCCCcch
Q psy5930 1050 SPIDLKSVYEVMKPLLLTLG-DYRNLN--LVTARKLSYIVQPFPSSFSEKLCEQLLVNLKNLFENIVAQKENPPKNSETE 1126 (2426)
Q Consensus 1050 ~~~~~e~L~q~LRPiL~nLs-D~k~Lt--v~gLegLarLLeLL~nyFkveiG~KLLdHLk~~~e~~~~~~~~~~~~~~~~ 1126 (2426)
-..... -.+-|-|+... +++.+- .--+++|+..+.=+ =.+|+.+|.-...... .......
T Consensus 446 ~g~~~f---~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~-----------~v~~~~~~~~~~~a~~---~~~~~~~ 508 (569)
T KOG1242|consen 446 LGEVSF---DDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGL-----------GVEKVEDILPEILANA---SSVLIDE 508 (569)
T ss_pred HHhhcc---cccccHHHHhhccchhhhhhHHHhhhHHHHHhcc-----------cchHHHHHHHHHHHHH---hhccchh
Confidence 111111 23455555544 444332 22344444443322 1344445543211111 1111223
Q ss_pred hHHHHHHHhhccCchh----HHhhHHHHHHHHH
Q psy5930 1127 KIIVVIIGIFKESPAA----KAQFIEPLISLIL 1155 (2426)
Q Consensus 1127 kii~aIinIFHLLP~a----a~~Fle~Lv~~Vl 1155 (2426)
.+.-..+-+||++|.. ...|+.+++..+.
T Consensus 509 ~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~ 541 (569)
T KOG1242|consen 509 RIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFL 541 (569)
T ss_pred hhccCeeehhhccchhhhHHhHHHHHHHHHHHH
Confidence 4555667789999943 2344555554443
No 8
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=91.54 E-value=17 Score=49.17 Aligned_cols=340 Identities=15% Similarity=0.205 Sum_probs=183.5
Q ss_pred HHHHhhcCCChhhhhHHHHHHHHHHHHHHHhhCCchhhcchhhHHHHHHHHHHhccCchhhhhHhHHHHHHHHHHhchHH
Q psy5930 730 AIAVILGHEDKELCKPGYIALKCIMETATCITGSIENACNLPLMEYLAERMCNLCYERAWYAKLGGCYAIKFFYNTMAIK 809 (2426)
Q Consensus 730 Ai~~~l~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~p~~~~L~~rf~~~Cy~~~w~~K~gG~~gi~~l~~~~~~~ 809 (2426)
.++..+++.+.+....|..++..+.+ .+.+ .+--....+.+-+-++.-+.+ ++|+++|..--...
T Consensus 46 ~vi~l~~s~~~~~Krl~yl~l~~~~~------~~~~------~~~l~~n~l~kdl~~~n~~~~---~lAL~~l~~i~~~~ 110 (526)
T PF01602_consen 46 EVIKLISSKDLELKRLGYLYLSLYLH------EDPE------LLILIINSLQKDLNSPNPYIR---GLALRTLSNIRTPE 110 (526)
T ss_dssp HHHCTCSSSSHHHHHHHHHHHHHHTT------TSHH------HHHHHHHHHHHHHCSSSHHHH---HHHHHHHHHH-SHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHhh------cchh------HHHHHHHHHHHhhcCCCHHHH---HHHHhhhhhhcccc
Confidence 44556667788888888887776643 1111 111234445555555554444 56666666533333
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhhhhhhhhHHH-HHHHHhhhcCCCCh
Q psy5930 810 WVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAETLTVQSKALSE-VTNELTRNITLPND 888 (2426)
Q Consensus 810 wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~lv~eL~s~n~ 888 (2426)
-+. .++..+...+.|-. .-++..|--++.++.+.+..- +.. ++..+..-|.+++.
T Consensus 111 ~~~----~l~~~v~~ll~~~~----~~VRk~A~~~l~~i~~~~p~~----------------~~~~~~~~l~~lL~d~~~ 166 (526)
T PF01602_consen 111 MAE----PLIPDVIKLLSDPS----PYVRKKAALALLKIYRKDPDL----------------VEDELIPKLKQLLSDKDP 166 (526)
T ss_dssp HHH----HHHHHHHHHHHSSS----HHHHHHHHHHHHHHHHHCHCC----------------HHGGHHHHHHHHTTHSSH
T ss_pred hhh----HHHHHHHHHhcCCc----hHHHHHHHHHHHHHhccCHHH----------------HHHHHHHHHhhhccCCcc
Confidence 332 23333333444333 356777777777777663211 111 35555666688889
Q ss_pred HHHHHHHHHHHHHHHHhCCchhhccccchhhhhccC-CCCccccccCchhhhHhhhhhhhhhcccCCCccccCcchhhHH
Q psy5930 889 LLREQSMYLLQVFAETQGKSVVQVMEPHKDVLADII-PPKKLLIRNHSANAQIGLMEGNTFCQSLTPRLFTTDMSIHEHS 967 (2426)
Q Consensus 889 ~VR~~aq~~L~~lae~t~~~v~ell~p~k~~Ll~~I-~~Kpl~lRalpf~~QIG~idaitfcl~L~p~~l~~~~~~~el~ 967 (2426)
.|+.+|-.++..+ +..+.....++.++...|...+ .+-|+ .|+-.+..++.+....+... +. .
T Consensus 167 ~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~--------~q~~il~~l~~~~~~~~~~~------~~-~ 230 (526)
T PF01602_consen 167 SVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPW--------LQIKILRLLRRYAPMEPEDA------DK-N 230 (526)
T ss_dssp HHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHH--------HHHHHHHHHTTSTSSSHHHH------HH-H
T ss_pred hhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchH--------HHHHHHHHHHhcccCChhhh------hH-H
Confidence 9998888887777 1111111144555555544332 12222 68888887776654332111 00 2
Q ss_pred HHHHHHHHhhccCchhhhcCCCCCCccccchHHHHHHHHHHhhhcCCchhhHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q psy5930 968 SFFQEITNICESSDQALMKLPCYKPISSLVPLRKAAMRALASWHYVPNCSQKIFNTLFAALERPNPELQEAAFQAMKTFV 1047 (2426)
Q Consensus 968 rll~E~l~LadadD~~l~k~~~~k~~~~lv~LRv~ci~lL~~~~~~~~~~~rIi~vfFKsL~s~s~ei~~aA~~gLk~vL 1047 (2426)
+++..+..+....+. ..+-.|++++......++..++++..+-+-|.++++++.-+|-++|....
T Consensus 231 ~~i~~l~~~l~s~~~---------------~V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~ 295 (526)
T PF01602_consen 231 RIIEPLLNLLQSSSP---------------SVVYEAIRLIIKLSPSPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLA 295 (526)
T ss_dssp HHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhcccc---------------HHHHHHHHHHHHhhcchHHHHhhHHHHHHHhhcccchhehhHHHHHHHhh
Confidence 344444444432222 25667888877655555567799999999999999999999999999987
Q ss_pred ccCCCChhhHHHhhHHHHhhhcCCCCCCHhHHHHHHHhhhhCCCcccHHHHHHHHHHHHHhhhhhhhhhcCCCCCCcchh
Q psy5930 1048 NGSPIDLKSVYEVMKPLLLTLGDYRNLNLVTARKLSYIVQPFPSSFSEKLCEQLLVNLKNLFENIVAQKENPPKNSETEK 1127 (2426)
Q Consensus 1048 ~~~~~~~e~L~q~LRPiL~nLsD~k~Ltv~gLegLarLLeLL~nyFkveiG~KLLdHLk~~~e~~~~~~~~~~~~~~~~k 1127 (2426)
+.. ++.+. ....++-.+.-....++ -..+|.-|..+.+..=-.+|-+.|+.+++...|+. -..+
T Consensus 296 ~~~---~~~v~-~~~~~~~~l~~~~d~~I-r~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~-----------~~~~ 359 (526)
T PF01602_consen 296 QSN---PPAVF-NQSLILFFLLYDDDPSI-RKKALDLLYKLANESNVKEILDELLKYLSELSDPD-----------FRRE 359 (526)
T ss_dssp CHC---HHHHG-THHHHHHHHHCSSSHHH-HHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HH-----------HHHH
T ss_pred ccc---chhhh-hhhhhhheecCCCChhH-HHHHHHHHhhcccccchhhHHHHHHHHHHhccchh-----------hhhh
Confidence 665 55555 33333334431112222 22344444444444444445555555553333322 1123
Q ss_pred HHHHHHHhhccCchhHHhhHHHHHHHHH
Q psy5930 1128 IIVVIIGIFKESPAAKAQFIEPLISLIL 1155 (2426)
Q Consensus 1128 ii~aIinIFHLLP~aa~~Fle~Lv~~Vl 1155 (2426)
++.+|..+..-.|+.+..+++-++..+-
T Consensus 360 ~i~~I~~la~~~~~~~~~~v~~l~~ll~ 387 (526)
T PF01602_consen 360 LIKAIGDLAEKFPPDAEWYVDTLLKLLE 387 (526)
T ss_dssp HHHHHHHHHHHHGSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCchHHHHHHHHHHhhh
Confidence 4444555544447777777777665543
No 9
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=91.34 E-value=1.5 Score=52.55 Aligned_cols=162 Identities=14% Similarity=0.124 Sum_probs=97.4
Q ss_pred HHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHhhCCchhhcchhhHHHHHHHHHHhccCchhhhhHhHHHHHHHHHHhc
Q psy5930 727 LIDAIAVILGHEDKELCKPGYIALKCIMETATCITGSIENACNLPLMEYLAERMCNLCYERAWYAKLGGCYAIKFFYNTM 806 (2426)
Q Consensus 727 l~DAi~~~l~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~p~~~~L~~rf~~~Cy~~~w~~K~gG~~gi~~l~~~~ 806 (2426)
++++|...+.+....+...|..++..+.... |.. =-|++..++.-+...|-+..=.-+..+...|..+++..
T Consensus 54 ~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l----~~~----~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~ 125 (228)
T PF12348_consen 54 LLDAIIKQLSDLRSKVSKTACQLLSDLARQL----GSH----FEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESC 125 (228)
T ss_dssp --HHHHH-S-HH---HHHHHHHHHHHHHHHH----GGG----GHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH----hHh----HHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHC
Confidence 5678888888888888888888888776643 322 12677889999999999988788888889999999987
Q ss_pred h-HHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhhhhh-hhhHHHHHHHHhhhcC
Q psy5930 807 A-IKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAETLTVQ-SKALSEVTNELTRNIT 884 (2426)
Q Consensus 807 ~-~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~lv~eL~ 884 (2426)
+ .. .+ ++..+.....+=+..++..+-..+..++...... .. ... ...+..++..+..-+.
T Consensus 126 ~~~~-------~~---~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~--~~------~l~~~~~~~~l~~~l~~~l~ 187 (228)
T PF12348_consen 126 SYSP-------KI---LLEILSQGLKSKNPQVREECAEWLAIILEKWGSD--SS------VLQKSAFLKQLVKALVKLLS 187 (228)
T ss_dssp -H---------HH---HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-------G------GG--HHHHHHHHHHHHHHHT
T ss_pred CcHH-------HH---HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccch--Hh------hhcccchHHHHHHHHHHHCC
Confidence 7 21 11 1222222334445556666666666666554411 01 111 1236778889999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCchhhccc
Q psy5930 885 LPNDLLREQSMYLLQVFAETQGKSVVQVME 914 (2426)
Q Consensus 885 s~n~~VR~~aq~~L~~lae~t~~~v~ell~ 914 (2426)
++++.||++|++++..+.+..|.....++.
T Consensus 188 D~~~~VR~~Ar~~~~~l~~~~~~~a~~~~~ 217 (228)
T PF12348_consen 188 DADPEVREAARECLWALYSHFPERAESILS 217 (228)
T ss_dssp SS-HHHHHHHHHHHHHHHHHH-HHH-----
T ss_pred CCCHHHHHHHHHHHHHHHHHCCHhhccchh
Confidence 999999999999999999888866555554
No 10
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=90.75 E-value=76 Score=42.85 Aligned_cols=291 Identities=14% Similarity=0.141 Sum_probs=164.6
Q ss_pred CChhhhHHHHHHHHHHHHhhccCcch-hhHhhHHhhhhcCcchHHHHHHHHHhhcCCCCCCCCCch--hhHHHHHHHHH-
Q psy5930 1499 VDPATRYHGHLLLAHMIAKFGVSQRV-VVQVFLGLLRAHASEVRPIVRQALEILTPAFPGRVDDGQ--RMLLVYTKKIL- 1574 (2426)
Q Consensus 1499 ~D~~~K~~Ayvlia~fI~~f~~P~KI-VlQVfvaLLra~q~E~R~LVrqALDIL~P~Lp~R~~~~~--~~w~~~tkkiL- 1574 (2426)
.++.+|..|.+.+++++..+.--..- +.+....||+...+ .++..|+-.+.-. |..++. .......+++.
T Consensus 126 ~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~---~V~~~a~~~l~~i---~~~~~~~~~~~~~~~~~L~~ 199 (526)
T PF01602_consen 126 PSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKDP---SVVSAALSLLSEI---KCNDDSYKSLIPKLIRILCQ 199 (526)
T ss_dssp SSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSSH---HHHHHHHHHHHHH---HCTHHHHTTHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCcc---hhHHHHHHHHHHH---ccCcchhhhhHHHHHHHhhh
Confidence 58899999999999999985433222 56666677744443 4445566555555 322222 22233333322
Q ss_pred -hccCCChhhHHHHHHHHhcCCccchhhh--hhhHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHHHhhhhhhhhhhccC
Q psy5930 1575 -VEEGHSNPQLSHVLTLIVKHYKVYYPVR--HGLIQQMIASMQRLGFSSSAMDHKKLSVELADVIIKWELQRVKEEAEGT 1651 (2426)
Q Consensus 1575 -~EEgh~~~Ql~hI~qlIVRH~dlFY~~R--~~fvp~mInsl~kLg~~~n~~E~r~LAiDL~elIi~WE~~r~~~~~~~~ 1651 (2426)
+...... -.+.+.+++.+.....+... ..+++.+.+.++ ..+.....+.+.+|++|...
T Consensus 200 ~l~~~~~~-~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~--------s~~~~V~~e~~~~i~~l~~~--------- 261 (526)
T PF01602_consen 200 LLSDPDPW-LQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQ--------SSSPSVVYEAIRLIIKLSPS--------- 261 (526)
T ss_dssp HHTCCSHH-HHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHSSS---------
T ss_pred cccccchH-HHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhh--------ccccHHHHHHHHHHHHhhcc---------
Confidence 1222222 23468888888888877877 678888888887 34566778888888877411
Q ss_pred CCCCCCCCCcccccccccCCCCCCCCccCCCCCCCCcchhhHHHHHHHHHHHHhccCCCCCCCCCcccccccCCchhHHH
Q psy5930 1652 SGGKAIQEPPRKKMALESFAPGESSMKYDIPTASKPIEKVHADAVINFLARLSCQVSDLPPNLSSSMQSQVIQTPGEMLA 1731 (2426)
Q Consensus 1652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~vvnfLiR~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 1731 (2426)
......+++.|+++.. .++ .+ +-
T Consensus 262 --------------------------------------~~~~~~~~~~L~~lL~-s~~-----------------~n-vr 284 (526)
T PF01602_consen 262 --------------------------------------PELLQKAINPLIKLLS-SSD-----------------PN-VR 284 (526)
T ss_dssp --------------------------------------HHHHHHHHHHHHHHHT-SSS-----------------HH-HH
T ss_pred --------------------------------------hHHHHhhHHHHHHHhh-ccc-----------------ch-he
Confidence 0145788999999885 221 11 44
Q ss_pred HHHHHHHHHhcCCCCCCCCccccchhhHHHhhccCCCCCccHHHHHHHHHHHHHHHhcCChhHHHHhhHHHHHHHHHHH-
Q psy5930 1732 RRCVSLIRMALKPEVWSHQNTEFKLTWLDKVLSSIDQPTANLGNISIALELLTLLITILDEGQILHIIKPLQRGLVACI- 1810 (2426)
Q Consensus 1732 ~r~l~LLk~~L~p~~W~~~~v~vkl~~feK~L~~~d~~~~n~~~~~naLevL~il~~~~~~~~il~nl~~lq~lL~kcl- 1810 (2426)
--++..|..+.+.. .+ .+. .....-..+...+ +...-..++++|..+.+..+-.- +-.-|.+++
T Consensus 285 ~~~L~~L~~l~~~~-~~--~v~-~~~~~~~~l~~~~----d~~Ir~~~l~lL~~l~~~~n~~~-------Il~eL~~~l~ 349 (526)
T PF01602_consen 285 YIALDSLSQLAQSN-PP--AVF-NQSLILFFLLYDD----DPSIRKKALDLLYKLANESNVKE-------ILDELLKYLS 349 (526)
T ss_dssp HHHHHHHHHHCCHC-HH--HHG-THHHHHHHHHCSS----SHHHHHHHHHHHHHH--HHHHHH-------HHHHHHHHHH
T ss_pred hhHHHHHHHhhccc-ch--hhh-hhhhhhheecCCC----ChhHHHHHHHHHhhcccccchhh-------HHHHHHHHHH
Confidence 44566666666432 22 222 2222111222122 23345677888888777543333 334444466
Q ss_pred hcCchhHHHHHHHHHHHHHhcCCCCCCCCCccCchhhHHHHHHHHHHHHHhhhccccCCCCCCcchHHHHHHHHHHHhhh
Q psy5930 1811 SSSITKVIRLVHALLCRLMSTFPTEPISSNVASKREELDHLYVCVSKVIYEGLSNYEKNPTATCSTLYGTVMMLKAACMN 1890 (2426)
Q Consensus 1811 ~~~n~~i~~~l~~ll~rll~~~p~~~~~~~~~~~~~e~~~f~~~l~~~i~e~L~~~~~~~~~~~~~~~~~l~lL~~~~~~ 1890 (2426)
..+..++++.+-.-+..+...+|. +.+.+...+.+++..+=.. .....+..+..+..+
T Consensus 350 ~~~d~~~~~~~i~~I~~la~~~~~------------~~~~~v~~l~~ll~~~~~~----------~~~~~~~~i~~ll~~ 407 (526)
T PF01602_consen 350 ELSDPDFRRELIKAIGDLAEKFPP------------DAEWYVDTLLKLLEISGDY----------VSNEIINVIRDLLSN 407 (526)
T ss_dssp HC--HHHHHHHHHHHHHHHHHHGS------------SHHHHHHHHHHHHHCTGGG----------CHCHHHHHHHHHHHH
T ss_pred hccchhhhhhHHHHHHHHHhccCc------------hHHHHHHHHHHhhhhcccc----------ccchHHHHHHHHhhc
Confidence 444677888887777777777652 2345555555555541111 111345555666677
Q ss_pred CchhhhHhhHHHHHHHH
Q psy5930 1891 HPAYVDRFILEFMRVIQ 1907 (2426)
Q Consensus 1891 ~p~~iD~~l~~lmk~l~ 1907 (2426)
.|+.-+..+..+++.+.
T Consensus 408 ~~~~~~~~l~~L~~~l~ 424 (526)
T PF01602_consen 408 NPELREKILKKLIELLE 424 (526)
T ss_dssp STTTHHHHHHHHHHHHT
T ss_pred ChhhhHHHHHHHHHHHH
Confidence 77766666666666653
No 11
>PF08163 NUC194: NUC194 domain; InterPro: IPR012582 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This is domain B in the catalytic subunit of DNA-dependent protein kinases.; GO: 0003677 DNA binding, 0004677 DNA-dependent protein kinase activity, 0005524 ATP binding, 0006303 double-strand break repair via nonhomologous end joining, 0005634 nucleus
Probab=89.85 E-value=0.24 Score=63.82 Aligned_cols=110 Identities=10% Similarity=0.121 Sum_probs=85.6
Q ss_pred ChhhhHHHHHHHHHHHHhhccCcchhhHhhHHhhhhcCcchHHHHHHHHHhhcCCCCCC-CCCchhhHHHHHHHHHhccC
Q psy5930 1500 DPATRYHGHLLLAHMIAKFGVSQRVVVQVFLGLLRAHASEVRPIVRQALEILTPAFPGR-VDDGQRMLLVYTKKILVEEG 1578 (2426)
Q Consensus 1500 D~~~K~~Ayvlia~fI~~f~~P~KIVlQVfvaLLra~q~E~R~LVrqALDIL~P~Lp~R-~~~~~~~w~~~tkkiL~EEg 1578 (2426)
|-.++|---..++.+|.+..-. -++|.--.- .+...|.|++...+.+...+
T Consensus 270 DelN~HecM~~m~~li~hm~~~----------------------------~i~p~~~~~~~~~~mP~WM~~l~~~l~~~s 321 (394)
T PF08163_consen 270 DELNQHECMATMLGLIDHMHRN----------------------------KITPKGEEGSQPSEMPPWMKFLHKKLSNPS 321 (394)
T ss_pred CcCCCCccHHHHHHHHHHHHHh----------------------------CCCCCcccCcCcCCCCHHHHHHHHHhcCCC
Confidence 8888887778888777754311 122321110 12345779999999999999
Q ss_pred CChhhHHHHHHHHhcCCccchhhhhhhHHHHHHHHhhhCCCCCc-chhhHHHHHHHHHHHHhh
Q psy5930 1579 HSNPQLSHVLTLIVKHYKVYYPVRHGLIQQMIASMQRLGFSSSA-MDHKKLSVELADVIIKWE 1640 (2426)
Q Consensus 1579 h~~~Ql~hI~qlIVRH~dlFY~~R~~fvp~mInsl~kLg~~~n~-~E~r~LAiDL~elIi~WE 1640 (2426)
-.++.-..|..+|++.|++|-|+-.+|+|.++..+-.- .+. ..-+.+.+|++.++++|-
T Consensus 322 ~~~NIrLFiaKlIiN~~~vF~pyAk~wl~pL~q~vv~~---~~~~~gihY~v~Di~~~lL~W~ 381 (394)
T PF08163_consen 322 THLNIRLFIAKLIINTPEVFRPYAKFWLPPLMQLVVSE---NNGGEGIHYFVRDICVTLLSWS 381 (394)
T ss_pred CCcceeeeehhhhhcCHHHHHHHHHHHHHHHHHHHhhc---cCCCCCcceeHHHHHHHHhhcc
Confidence 99999999999999999999999999999999987732 233 667999999999999996
No 12
>PTZ00429 beta-adaptin; Provisional
Probab=89.65 E-value=1.2e+02 Score=43.23 Aligned_cols=193 Identities=10% Similarity=0.085 Sum_probs=106.1
Q ss_pred HHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHhhCCchhhcchhhHHHHHHHHHHhccCchhhhhHhHHHHHHHHHHhc
Q psy5930 727 LIDAIAVILGHEDKELCKPGYIALKCIMETATCITGSIENACNLPLMEYLAERMCNLCYERAWYAKLGGCYAIKFFYNTM 806 (2426)
Q Consensus 727 l~DAi~~~l~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~p~~~~L~~rf~~~Cy~~~w~~K~gG~~gi~~l~~~~ 806 (2426)
++++|..++.+.++-+|+.|..|+-.++...- +......+...|.+ +-.++.--....++..+.-+.+.-
T Consensus 141 l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p------elv~~~~~~~~L~~----LL~D~dp~Vv~nAl~aL~eI~~~~ 210 (746)
T PTZ00429 141 TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM------QLFYQQDFKKDLVE----LLNDNNPVVASNAAAIVCEVNDYG 210 (746)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc------ccccccchHHHHHH----HhcCCCccHHHHHHHHHHHHHHhC
Confidence 78899999999999999999999988877432 22112223333333 223555566666666565555544
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhhhhhhhhHHHHHHHHhhhcCCC
Q psy5930 807 AIKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAETLTVQSKALSEVTNELTRNITLP 886 (2426)
Q Consensus 807 ~~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~eL~s~ 886 (2426)
|..| +.-...++.|+..|.+.. +-.+-.+..++.... +.+. .....++..+..-|.|.
T Consensus 211 ~~~l--~l~~~~~~~Ll~~L~e~~--------EW~Qi~IL~lL~~y~-P~~~-----------~e~~~il~~l~~~Lq~~ 268 (746)
T PTZ00429 211 SEKI--ESSNEWVNRLVYHLPECN--------EWGQLYILELLAAQR-PSDK-----------ESAETLLTRVLPRMSHQ 268 (746)
T ss_pred chhh--HHHHHHHHHHHHHhhcCC--------hHHHHHHHHHHHhcC-CCCc-----------HHHHHHHHHHHHHhcCC
Confidence 4433 223445666777776554 222224444443321 2111 11345666677778888
Q ss_pred ChHHHHHHHHHHHHHHHHhCCchhhccccchhhhhccCCCCccccccCchhhhHhhhhhhhhhcccCCCccc
Q psy5930 887 NDLLREQSMYLLQVFAETQGKSVVQVMEPHKDVLADIIPPKKLLIRNHSANAQIGLMEGNTFCQSLTPRLFT 958 (2426)
Q Consensus 887 n~~VR~~aq~~L~~lae~t~~~v~ell~p~k~~Ll~~I~~Kpl~lRalpf~~QIG~idaitfcl~L~p~~l~ 958 (2426)
|+.|-=.|-+++-.++...+ .+++...-.++..|+.. | -.-+-.+|--.+..+...+...|.+|.
T Consensus 269 N~AVVl~Aik~il~l~~~~~---~~~~~~~~~rl~~pLv~--L--~ss~~eiqyvaLr~I~~i~~~~P~lf~ 333 (746)
T PTZ00429 269 NPAVVMGAIKVVANLASRCS---QELIERCTVRVNTALLT--L--SRRDAETQYIVCKNIHALLVIFPNLLR 333 (746)
T ss_pred CHHHHHHHHHHHHHhcCcCC---HHHHHHHHHHHHHHHHH--h--hCCCccHHHHHHHHHHHHHHHCHHHHH
Confidence 99888777777766653321 12222222222222110 0 111346777777777666666666553
No 13
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=87.91 E-value=3.3 Score=49.57 Aligned_cols=110 Identities=13% Similarity=0.119 Sum_probs=62.6
Q ss_pred cCchhhhhHhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCCCCCchhh
Q psy5930 785 YERAWYAKLGGCYAIKFFYNTMAIKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAET 864 (2426)
Q Consensus 785 y~~~w~~K~gG~~gi~~l~~~~~~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~ 864 (2426)
-+..|-.+..|..-+.-++..-.......-.++.++.++-.+...-.+.-+.+...|-.++..+...+...
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~--------- 87 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSH--------- 87 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGG---------
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHh---------
Confidence 35679999999999999887652222223334444433333222333444555556666776666655422
Q ss_pred hhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhC
Q psy5930 865 LTVQSKALSEVTNELTRNITLPNDLLREQSMYLLQVFAETQG 906 (2426)
Q Consensus 865 ~~~~~~~~~~~~~~lv~eL~s~n~~VR~~aq~~L~~lae~t~ 906 (2426)
....+..++..|+.-+.+.+..+|+.|+.||..+.+..+
T Consensus 88 ---~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~ 126 (228)
T PF12348_consen 88 ---FEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS 126 (228)
T ss_dssp ---GHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-
T ss_pred ---HHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC
Confidence 112356677788888999999999999999999998555
No 14
>KOG1242|consensus
Probab=87.12 E-value=86 Score=42.45 Aligned_cols=140 Identities=16% Similarity=0.150 Sum_probs=98.5
Q ss_pred HHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHhhCCchhhcchhhHHHHHHHHHHhccCchhhhhHhHHHHHHHHHHhc
Q psy5930 727 LIDAIAVILGHEDKELCKPGYIALKCIMETATCITGSIENACNLPLMEYLAERMCNLCYERAWYAKLGGCYAIKFFYNTM 806 (2426)
Q Consensus 727 l~DAi~~~l~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~p~~~~L~~rf~~~Cy~~~w~~K~gG~~gi~~l~~~~ 806 (2426)
++=+|+.++++..+.+++++..|++.+...... +|.+ .++....+.-.+..|+.|.|..-++..|...-
T Consensus 217 ~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~-~aVK----------~llpsll~~l~~~kWrtK~aslellg~m~~~a 285 (569)
T KOG1242|consen 217 ILPSILTNFGDKINKVREAAVEAAKAIMRCLSA-YAVK----------LLLPSLLGSLLEAKWRTKMASLELLGAMADCA 285 (569)
T ss_pred hHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc-chhh----------HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhc
Confidence 678899999999999999999999988763321 1221 13333333333448999999999999776654
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhhhhhhhhHHHHHHHHhhhcCCC
Q psy5930 807 AIKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAETLTVQSKALSEVTNELTRNITLP 886 (2426)
Q Consensus 807 ~~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~eL~s~ 886 (2426)
.+-+-....++++-+-.||-|+-.++. +.+.+++.++-.+.- ++ -++..+-.|+.-+.+|
T Consensus 286 -p~qLs~~lp~iiP~lsevl~DT~~evr----~a~~~~l~~~~svid----N~-----------dI~~~ip~Lld~l~dp 345 (569)
T KOG1242|consen 286 -PKQLSLCLPDLIPVLSEVLWDTKPEVR----KAGIETLLKFGSVID----NP-----------DIQKIIPTLLDALADP 345 (569)
T ss_pred -hHHHHHHHhHhhHHHHHHHccCCHHHH----HHHHHHHHHHHHhhc----cH-----------HHHHHHHHHHHHhcCc
Confidence 445666778999999999999987654 445555554443321 11 2666788888999999
Q ss_pred ChHHHHHHHHH
Q psy5930 887 NDLLREQSMYL 897 (2426)
Q Consensus 887 n~~VR~~aq~~ 897 (2426)
+..|.++.+..
T Consensus 346 ~~~~~e~~~~L 356 (569)
T KOG1242|consen 346 SCYTPECLDSL 356 (569)
T ss_pred ccchHHHHHhh
Confidence 98888754443
No 15
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=85.89 E-value=11 Score=39.57 Aligned_cols=94 Identities=13% Similarity=0.114 Sum_probs=75.2
Q ss_pred hhHhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhhhhhhh
Q psy5930 791 AKLGGCYAIKFFYNTMAIKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAETLTVQSK 870 (2426)
Q Consensus 791 ~K~gG~~gi~~l~~~~~~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~~ 870 (2426)
.|.||.+|+.....-++.. +.++.-+|++-++..+-|-- .-++-.|-+.+..+.+.+... . -.
T Consensus 2 ~R~ggli~Laa~ai~l~~~-~~~~l~~Il~pVL~~~~D~d----~rVRy~AcEaL~ni~k~~~~~-----------~-l~ 64 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKD-ISKYLDEILPPVLKCFDDQD----SRVRYYACEALYNISKVARGE-----------I-LP 64 (97)
T ss_pred chhHHHHHHHHHHHHchHh-HHHHHHHHHHHHHHHcCCCc----HHHHHHHHHHHHHHHHHHHHH-----------H-HH
Confidence 5889999999999888777 88899999999999887765 445667788888888776421 1 12
Q ss_pred hHHHHHHHHhhhcCCCChHHHHHHHHHHHHH
Q psy5930 871 ALSEVTNELTRNITLPNDLLREQSMYLLQVF 901 (2426)
Q Consensus 871 ~~~~~~~~lv~eL~s~n~~VR~~aq~~L~~l 901 (2426)
.|..+...|..-+..|++.||..|.-.-+++
T Consensus 65 ~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~ll 95 (97)
T PF12755_consen 65 YFNEIFDALCKLSADPDENVRSAAELLDRLL 95 (97)
T ss_pred HHHHHHHHHHHHHcCCchhHHHHHHHHHHHh
Confidence 5888999999999999999999997655544
No 16
>KOG0890|consensus
Probab=84.99 E-value=4.2 Score=61.01 Aligned_cols=107 Identities=17% Similarity=0.197 Sum_probs=83.8
Q ss_pred cCCCChHHHHHHHhhhcCCCCCCChHHHHHHhhhcCcHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCcchh
Q psy5930 2262 DVHPSSINTIYESLAHCNPPLPIKPAIMTYLGKAQGLWHRVTLSLEKMAVEGLLKQNRMQNRAPSVADCYDFEPDHAPQQ 2341 (2426)
Q Consensus 2262 ~~~pnviqtlLegi~~c~p~i~lPP~LikyLgkt~naW~~ai~~LE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2341 (2426)
+..+.-|+.||.. +|.-.+.-.+....+|++|+.++|+.-. + + -.....
T Consensus 1371 ~~~~~~v~~fL~~---------iP~~tLa~aSfrc~~y~RalmylEs~~~--~-------------------e-k~~~~~ 1419 (2382)
T KOG0890|consen 1371 GEDIEGVQSFLDL---------IPSDTLARASFRCKAYARALMYLESHRS--T-------------------E-KEKETE 1419 (2382)
T ss_pred CCchhhhHHHHhh---------ccHHHHHHHHHhhHHHHHHHHHHHHhcc--c-------------------c-chhHHH
Confidence 3445556667654 6888899999999999999999998511 0 0 011234
Q ss_pred hhHHHHHHHHHHhcCccHHHHHHHhhh-cCchhhHHHHHHHHhccHHHHHHHHHHHHHh
Q psy5930 2342 QDIIDQLAEMYSALREEDMWFGLWQKN-AKHKETLYALAYEQQGFYEQALKAYEVTIKK 2399 (2426)
Q Consensus 2342 ~~~~DaL~eLY~~L~E~D~~~GlWrrr-a~~~ET~~ALs~EQ~G~w~~AQ~~YE~a~~k 2399 (2426)
+.-...|-.+|+++.|-|-..|.-++| +...=+..=+-.|-.|.|..|+.-||.+..+
T Consensus 1420 e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl~~qil~~e~~g~~~da~~Cye~~~q~ 1478 (2382)
T KOG0890|consen 1420 EALYFLLQNLYGSIHDPDGVEGVSARRFADPSLYQQILEHEASGNWADAAACYERLIQK 1478 (2382)
T ss_pred HHHHHHHHHHHHhcCCcchhhhHHHHhhcCccHHHHHHHHHhhccHHHHHHHHHHhhcC
Confidence 455666777999999999999999954 7777888899999999999999999998766
No 17
>KOG0915|consensus
Probab=82.93 E-value=6.4 Score=56.76 Aligned_cols=127 Identities=16% Similarity=0.194 Sum_probs=86.6
Q ss_pred hHHHHHHHHHHhccCchhhhhHhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHH
Q psy5930 772 LMEYLAERMCNLCYERAWYAKLGGCYAIKFFYNTMAIKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVL 851 (2426)
Q Consensus 772 ~~~~L~~rf~~~Cy~~~w~~K~gG~~gi~~l~~~~~~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~ 851 (2426)
++.+++..+.-.|-..+|+.+-+.|+++.-|++.=|..-+.++..++--|+|.|+.|.-+. +++.|..+...+-+.
T Consensus 1036 y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEs----VR~aa~~~~~~lsKl 1111 (1702)
T KOG0915|consen 1036 YLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKES----VREAADKAARALSKL 1111 (1702)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999999999999999999999999999999877644 344444444444333
Q ss_pred HcCCCCCCCchhhhhhhhhhHHHHHHHHhh--hcCCCChHHHHHHHHHHHHHHHHhCC
Q psy5930 852 CATPIKEPVDAETLTVQSKALSEVTNELTR--NITLPNDLLREQSMYLLQVFAETQGK 907 (2426)
Q Consensus 852 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~--eL~s~n~~VR~~aq~~L~~lae~t~~ 907 (2426)
|..-.+..+. ...+.+-+++-.++- ...|--..||..+-..+--+++-.|.
T Consensus 1112 ~vr~~d~~~~-----~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~ 1164 (1702)
T KOG0915|consen 1112 CVRICDVTNG-----AKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGK 1164 (1702)
T ss_pred HhhhcccCCc-----ccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchh
Confidence 3322121111 112223333333332 22344557888887777777776664
No 18
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=81.87 E-value=8.4 Score=51.81 Aligned_cols=171 Identities=17% Similarity=0.282 Sum_probs=103.0
Q ss_pred CCccc-cCcchhhHHHHHHHHHHhhccCchhhhcCCCCCCccccchHHHHHHHHHHhh-hcCCchhhHHHHHHHHhhcCC
Q psy5930 954 PRLFT-TDMSIHEHSSFFQEITNICESSDQALMKLPCYKPISSLVPLRKAAMRALASW-HYVPNCSQKIFNTLFAALERP 1031 (2426)
Q Consensus 954 p~~l~-~~~~~~el~rll~E~l~LadadD~~l~k~~~~k~~~~lv~LRv~ci~lL~~~-~~~~~~~~rIi~vfFKsL~s~ 1031 (2426)
|.||. |. +--..-+.-.+.|||.||.. .|+.+||.|..- -..|++-.||..|+-+-|-+.
T Consensus 47 ~kffk~FP---~l~~~Ai~a~~DLcEDed~~---------------iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~td 108 (556)
T PF05918_consen 47 PKFFKHFP---DLQEEAINAQLDLCEDEDVQ---------------IRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTD 108 (556)
T ss_dssp HHHHCC-G---GGHHHHHHHHHHHHT-SSHH---------------HHHHHHHHGGGG--T--T-HHHHHHHHHHHTT--
T ss_pred HHHHhhCh---hhHHHHHHHHHHHHhcccHH---------------HHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhcc
Confidence 55555 44 22245677779999988865 799999988744 446889999999999999999
Q ss_pred CHHHHHHHHHHHHHHHccCCCChhhHHHh-hHHHHhh-hcCC--CCCCHhHHHHHHHhhhhCCCccc--HHHHHHHHHHH
Q psy5930 1032 NPELQEAAFQAMKTFVNGSPIDLKSVYEV-MKPLLLT-LGDY--RNLNLVTARKLSYIVQPFPSSFS--EKLCEQLLVNL 1105 (2426)
Q Consensus 1032 s~ei~~aA~~gLk~vL~~~~~~~e~L~q~-LRPiL~n-LsD~--k~Ltv~gLegLarLLeLL~nyFk--veiG~KLLdHL 1105 (2426)
.+.-+++.+.+|...+.+. ++--+.+ ..-|+.+ -+|- |.=.+..|. .+|-.|=+.+++ .|.=+-+.+++
T Consensus 109 d~~E~~~v~~sL~~ll~~d---~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~--~kl~~l~~~~~~p~~E~e~~i~~~i 183 (556)
T PF05918_consen 109 DPVELDAVKNSLMSLLKQD---PKGTLTGLFSQIESSKSGDEQVRERALKFLR--EKLKPLKPELLTPQKEMEEFIVDEI 183 (556)
T ss_dssp -HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH---HS-HHHHHHHHHHHH--HHGGGS-TTTS---HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcC---cHHHHHHHHHHHHhcccCchHHHHHHHHHHH--HHHhhCcHHHhhchHHHHHHHHHHH
Confidence 9999999999999887653 3333333 3333211 0121 111112222 455667778888 88888899999
Q ss_pred HHhhhhhhhhhcCCCCCCcchhHHHHHHHhhccCc-hhHHhhHHHHHHHHHH
Q psy5930 1106 KNLFENIVAQKENPPKNSETEKIIVVIIGIFKESP-AAKAQFIEPLISLILE 1156 (2426)
Q Consensus 1106 k~~~e~~~~~~~~~~~~~~~~kii~aIinIFHLLP-~aa~~Fle~Lv~~Vl~ 1156 (2426)
|+.++.. .+++.+++..++.-+++.- .++......||..|.+
T Consensus 184 kkvL~DV---------TaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~e 226 (556)
T PF05918_consen 184 KKVLQDV---------TAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEE 226 (556)
T ss_dssp HHHCTT-----------HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHH
T ss_pred HHHHHhc---------cHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHH
Confidence 9887631 2467788888888877721 1234456666666654
No 19
>KOG2023|consensus
Probab=81.47 E-value=54 Score=44.36 Aligned_cols=318 Identities=16% Similarity=0.211 Sum_probs=175.3
Q ss_pred hhCCchhhcchhhHHHHHHHHHHhccCchhhhhHhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhcCCCcccchhHHH
Q psy5930 760 ITGSIENACNLPLMEYLAERMCNLCYERAWYAKLGGCYAIKFFYNTMAIKWVYSHMFVFVKALLFVMMDLTGEVSSGAID 839 (2426)
Q Consensus 760 i~~~~~~~~~~p~~~~L~~rf~~~Cy~~~w~~K~gG~~gi~~l~~~~~~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~ 839 (2426)
+||..-...-+|+.+. .-..+.|..|=+|+++++.+.|- .+..+..|..+++.=|+-.|-|=-.=+-+.
T Consensus 385 vf~~elL~~l~PlLk~-------~L~~~~W~vrEagvLAlGAIAEG-cM~g~~p~LpeLip~l~~~L~DKkplVRsI--- 453 (885)
T KOG2023|consen 385 VFGDELLPILLPLLKE-------HLSSEEWKVREAGVLALGAIAEG-CMQGFVPHLPELIPFLLSLLDDKKPLVRSI--- 453 (885)
T ss_pred hhHHHHHHHHHHHHHH-------HcCcchhhhhhhhHHHHHHHHHH-HhhhcccchHHHHHHHHHHhccCccceeee---
Confidence 5555444444454432 22339999999999999998764 467778888888888888887765444332
Q ss_pred HHHHHHHHHHHHHcCCCC--CCCchhhhhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhCCchhhccccch
Q psy5930 840 EARRNLKQLIVLCATPIK--EPVDAETLTVQSKALSEVTNELTRNITLPNDLLREQSMYLLQVFAETQGKSVVQVMEPHK 917 (2426)
Q Consensus 840 ~a~~~l~~ll~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~lv~eL~s~n~~VR~~aq~~L~~lae~t~~~v~ell~p~k 917 (2426)
+|++-.. .-.-.+ ..++.|.-+...|...+...|+.|.|+|=.++.++-|-.|.+.. ||-
T Consensus 454 -----------TCWTLsRys~wv~~~---~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLV----p~l 515 (885)
T KOG2023|consen 454 -----------TCWTLSRYSKWVVQD---SRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELV----PYL 515 (885)
T ss_pred -----------eeeeHhhhhhhHhcC---ChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhH----HHH
Confidence 2332100 000000 02356888899999999999999999999999999999996655 455
Q ss_pred hhhhccC---C----CCccccccCchhhhHhh--------hhhhhhhcccCCCccc----cCcchhhHHHHHHHHHHhhc
Q psy5930 918 DVLADII---P----PKKLLIRNHSANAQIGL--------MEGNTFCQSLTPRLFT----TDMSIHEHSSFFQEITNICE 978 (2426)
Q Consensus 918 ~~Ll~~I---~----~Kpl~lRalpf~~QIG~--------idaitfcl~L~p~~l~----~~~~~~el~rll~E~l~Lad 978 (2426)
+.+|+.+ | .|-| + =.-.-||. .+--.|..-|=||+++ ..++-.++.-+|.=.-.+|.
T Consensus 516 ~~IL~~l~~af~kYQ~KNL--l--ILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPLLEClSsia~ 591 (885)
T KOG2023|consen 516 EYILDQLVFAFGKYQKKNL--L--ILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDLFPLLECLSSIAS 591 (885)
T ss_pred HHHHHHHHHHHHHHhhcce--e--hHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchHHHHHHHHHHHHH
Confidence 5555432 2 2222 1 12233332 2222455555677664 22111344444433333443
Q ss_pred cCchhhhcCCCCCCccccchHHHHHHHHHHhhhcCCc-------------------------------hhhHHHHHHHHh
Q psy5930 979 SSDQALMKLPCYKPISSLVPLRKAAMRALASWHYVPN-------------------------------CSQKIFNTLFAA 1027 (2426)
Q Consensus 979 adD~~l~k~~~~k~~~~lv~LRv~ci~lL~~~~~~~~-------------------------------~~~rIi~vfFKs 1027 (2426)
|=..... +.+...-..-..+-.-|.++++....-|. +++.|..++++|
T Consensus 592 AL~~gF~-P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C 670 (885)
T KOG2023|consen 592 ALGVGFL-PYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQC 670 (885)
T ss_pred HHhcccc-ccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHH
Confidence 3222110 00000000011111112333332222111 122677777888
Q ss_pred hcCCCHHHHHHHHHHHHHHHcc-----------------CCCChhh---------------------HHHhhHHHHhhhc
Q psy5930 1028 LERPNPELQEAAFQAMKTFVNG-----------------SPIDLKS---------------------VYEVMKPLLLTLG 1069 (2426)
Q Consensus 1028 L~s~s~ei~~aA~~gLk~vL~~-----------------~~~~~e~---------------------L~q~LRPiL~nLs 1069 (2426)
+--.-||+.+-|+.=|-+.-.- .+++++- -++-++|||.+|-
T Consensus 671 ~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~ 750 (885)
T KOG2023|consen 671 LQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLI 750 (885)
T ss_pred hccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHH
Confidence 8888888877777655544322 3344332 2344777777665
Q ss_pred ---CCCCCCHhHHHHHHHhhhhCCCcccHHHHHHHHHHHHHhhhh
Q psy5930 1070 ---DYRNLNLVTARKLSYIVQPFPSSFSEKLCEQLLVNLKNLFEN 1111 (2426)
Q Consensus 1070 ---D~k~Ltv~gLegLarLLeLL~nyFkveiG~KLLdHLk~~~e~ 1111 (2426)
+.++-....+|..|--.--|.-+=.++...-+=.-.|.|+..
T Consensus 751 ~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~s 795 (885)
T KOG2023|consen 751 TIINRQNTPKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTS 795 (885)
T ss_pred HHhcccCchHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHH
Confidence 345555567777776666666555556656555555889874
No 20
>KOG1248|consensus
Probab=80.09 E-value=91 Score=45.04 Aligned_cols=91 Identities=8% Similarity=0.010 Sum_probs=62.4
Q ss_pred HHHHHHhchHHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhhhhhhhhHHHHHHH
Q psy5930 799 IKFFYNTMAIKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAETLTVQSKALSEVTNE 878 (2426)
Q Consensus 799 i~~l~~~~~~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 (2426)
+..++...|-.-+....-+++..|.-++- .+.....++.-+..+|..||+.--...=.. +..++.+.+
T Consensus 75 L~li~~~VPs~vL~~kFs~~~~~l~~~~~--~~stn~svlr~~iscL~~lLraQd~~aW~~---------~~t~~~~~~- 142 (1176)
T KOG1248|consen 75 LVLILKYVPSPVLQAKFSDTLNILAPFLT--AESTNGSVLRLAISCLEDLLRAQDASAWSY---------SSTKTELFG- 142 (1176)
T ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHHHHh--hhcccchHHHHHHHHHHHHHHHcchhhhcc---------ccHHHHHHH-
Confidence 44456777888899999999999999987 667778889999999999998621100011 111222222
Q ss_pred HhhhcCCCChHHHHHHHHHHHHH
Q psy5930 879 LTRNITLPNDLLREQSMYLLQVF 901 (2426)
Q Consensus 879 lv~eL~s~n~~VR~~aq~~L~~l 901 (2426)
+..-.-|+.+.||+.||+++..+
T Consensus 143 il~~~~h~~pkvRk~a~~~i~~V 165 (1176)
T KOG1248|consen 143 ILAFAAHKKPKVRKAAQRGIAAV 165 (1176)
T ss_pred HHHHHhcCchHHHHHHHHHHHHH
Confidence 23344577889999999888654
No 21
>KOG0212|consensus
Probab=79.94 E-value=1e+02 Score=41.23 Aligned_cols=268 Identities=15% Similarity=0.168 Sum_probs=169.6
Q ss_pred HHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHhhCCchhhcchhhHHHHHHHHHHhccCchhhhhHhHHHHHHHHH---
Q psy5930 727 LIDAIAVILGHEDKELCKPGYIALKCIMETATCITGSIENACNLPLMEYLAERMCNLCYERAWYAKLGGCYAIKFFY--- 803 (2426)
Q Consensus 727 l~DAi~~~l~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~p~~~~L~~rf~~~Cy~~~w~~K~gG~~gi~~l~--- 803 (2426)
++--++.|+++.+..+|.-|.+.+-.+.+.++ ..-+++|+.++..+|..--+.+--.|.|.-+.-..+-
T Consensus 85 iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k--------~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIV 156 (675)
T KOG0212|consen 85 IVPPVLNCFSDQDSQVRYYACESLYNIAKVAK--------GEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIV 156 (675)
T ss_pred hhHHHHHhccCccceeeeHhHHHHHHHHHHhc--------cCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhc
Confidence 55567789999999999988888877766543 2456888999999999988888888888776654431
Q ss_pred -----------------Hhc----------hHHHH-----------HHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHH
Q psy5930 804 -----------------NTM----------AIKWV-----------YSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNL 845 (2426)
Q Consensus 804 -----------------~~~----------~~~wl-----------~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l 845 (2426)
+++ -.+|+ ..|..+|+.+||-.|-|-..| ++..+..++
T Consensus 157 te~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~e----Vr~~~~t~l 232 (675)
T KOG0212|consen 157 TESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDE----VRTLTDTLL 232 (675)
T ss_pred cccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHH----HHHHHHHHH
Confidence 111 13776 467788999999988776644 566778888
Q ss_pred HHHHHHHcCCCCCCCchhhhhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhCCchhhccccchhhhhccCC
Q psy5930 846 KQLIVLCATPIKEPVDAETLTVQSKALSEVTNELTRNITLPNDLLREQSMYLLQVFAETQGKSVVQVMEPHKDVLADIIP 925 (2426)
Q Consensus 846 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~eL~s~n~~VR~~aq~~L~~lae~t~~~v~ell~p~k~~Ll~~I~ 925 (2426)
...++-....+..- .+.+++..++..+.+|++-.+..| |..|-|...++-..++ |
T Consensus 233 ~~fL~eI~s~P~s~-----------d~~~~i~vlv~~l~ss~~~iq~~a---l~Wi~efV~i~g~~~l-~---------- 287 (675)
T KOG0212|consen 233 SEFLAEIRSSPSSM-----------DYDDMINVLVPHLQSSEPEIQLKA---LTWIQEFVKIPGRDLL-L---------- 287 (675)
T ss_pred HHHHHHHhcCcccc-----------CcccchhhccccccCCcHHHHHHH---HHHHHHHhcCCCcchh-h----------
Confidence 88887665332210 245568889999999999988866 6666555443333332 1
Q ss_pred CCccccccCchhhhHhhhhhhhhhcccCCCccccCcchhhHHHHHH-HHHHhhccCchh-----------hhcCCCCCCc
Q psy5930 926 PKKLLIRNHSANAQIGLMEGNTFCQSLTPRLFTTDMSIHEHSSFFQ-EITNICESSDQA-----------LMKLPCYKPI 993 (2426)
Q Consensus 926 ~Kpl~lRalpf~~QIG~idaitfcl~L~p~~l~~~~~~~el~rll~-E~l~LadadD~~-----------l~k~~~~k~~ 993 (2426)
+--|...|+-=|++-.++- ++.+..+... +++.+++.+--. +.|. -.
T Consensus 288 ------------~~s~il~~iLpc~s~~e~~-----~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~----l~ 346 (675)
T KOG0212|consen 288 ------------YLSGILTAILPCLSDTEEM-----SIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKY----LS 346 (675)
T ss_pred ------------hhhhhhhhcccCCCCCccc-----cHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHH----hh
Confidence 1123333333344433321 1233333333 334444322111 1111 01
Q ss_pred cccchHHHHHHHHHHhhh-cCCc----hhhHHHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCC
Q psy5930 994 SSLVPLRKAAMRALASWH-YVPN----CSQKIFNTLFAALERPNPELQEAAFQAMKTFVNGSPI 1052 (2426)
Q Consensus 994 ~~lv~LRv~ci~lL~~~~-~~~~----~~~rIi~vfFKsL~s~s~ei~~aA~~gLk~vL~~~~~ 1052 (2426)
..-+.=|++|++-+..-. +.|. +...|+.++-|+|-.+|.|++.-+-+-+..+-+.++-
T Consensus 347 ~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 347 DDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNS 410 (675)
T ss_pred cchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCccc
Confidence 122456888888655433 3332 4458999999999999999999999888887655443
No 22
>KOG1824|consensus
Probab=78.29 E-value=85 Score=44.18 Aligned_cols=155 Identities=12% Similarity=0.102 Sum_probs=104.0
Q ss_pred HHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHhhCCchhhcchhhHHHHHHHHHHhccCchhhhhHhHHHHHHHHHHhc
Q psy5930 727 LIDAIAVILGHEDKELCKPGYIALKCIMETATCITGSIENACNLPLMEYLAERMCNLCYERAWYAKLGGCYAIKFFYNTM 806 (2426)
Q Consensus 727 l~DAi~~~l~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~p~~~~L~~rf~~~Cy~~~w~~K~gG~~gi~~l~~~~ 806 (2426)
++++++..|++.+.++..-|+.++..+.... .-. =.+++++.+|..-..-.=+.+.=..+|+++++.++
T Consensus 48 vv~~lLklL~D~ngEVQnlAVKClg~lvsKv--------ke~---~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl 116 (1233)
T KOG1824|consen 48 VVKMLLKLLEDKNGEVQNLAVKCLGPLVSKV--------KED---QLETIVENLCSNMLSGKEQLRDISSIGLKTVIANL 116 (1233)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHhhc--------hHH---HHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcC
Confidence 8899999999999999999999998765321 111 23678888888766666677777889999999999
Q ss_pred hH-------HHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhhhhhhhhHHHHHHHH
Q psy5930 807 AI-------KWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAETLTVQSKALSEVTNEL 879 (2426)
Q Consensus 807 ~~-------~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 879 (2426)
|+ .-++.+..-.+..-+- -.+..+++.-++-+.+..++.+.-+-..+ .-..+...+
T Consensus 117 ~P~~~~~la~tV~~~~t~~l~~~i~-----~qe~~sai~~e~lDil~d~lsr~g~ll~~------------fh~~il~~l 179 (1233)
T KOG1824|consen 117 PPSSSSFLAATVCKRITPKLKQAIS-----KQEDVSAIKCEVLDILADVLSRFGTLLPN------------FHLSILKCL 179 (1233)
T ss_pred CCccccccccHHHHHHHHHHHHHhh-----hcccchhhHHHHHHHHHHHHHhhcccCcc------------hHHHHHHHH
Confidence 64 2233333322222221 11222334445556666666554332221 122356678
Q ss_pred hhhcCCCChHHHHHHHHHHHHHHHHhCCch
Q psy5930 880 TRNITLPNDLLREQSMYLLQVFAETQGKSV 909 (2426)
Q Consensus 880 v~eL~s~n~~VR~~aq~~L~~lae~t~~~v 909 (2426)
.+.|.+|...||+-|--+|..+|...+..+
T Consensus 180 ~~ql~s~R~aVrKkai~~l~~la~~~~~~l 209 (1233)
T KOG1824|consen 180 LPQLQSPRLAVRKKAITALGHLASSCNRDL 209 (1233)
T ss_pred hhcccChHHHHHHHHHHHHHHHHHhcCHHH
Confidence 899999999999999999999998877544
No 23
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=77.38 E-value=24 Score=40.62 Aligned_cols=80 Identities=19% Similarity=0.260 Sum_probs=67.3
Q ss_pred hhHHHHHHHHHHhccCchhhhhHhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHH
Q psy5930 771 PLMEYLAERMCNLCYERAWYAKLGGCYAIKFFYNTMAIKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIV 850 (2426)
Q Consensus 771 p~~~~L~~rf~~~Cy~~~w~~K~gG~~gi~~l~~~~~~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~ 850 (2426)
.-.+.+..|..++......+.|..|+.=++..++.-+..-+.++=-.++++|+-+|.. .-|..+.+.|-.++..|+.
T Consensus 21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~---~~~~~~~~~ai~~L~~l~~ 97 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEK---PDPPSVLEAAIITLTRLFD 97 (165)
T ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999999999999988888888889999999999999 2334467788888888876
Q ss_pred HHc
Q psy5930 851 LCA 853 (2426)
Q Consensus 851 ~~~ 853 (2426)
...
T Consensus 98 ~~~ 100 (165)
T PF08167_consen 98 LIR 100 (165)
T ss_pred Hhc
Confidence 544
No 24
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=76.51 E-value=4.2 Score=47.17 Aligned_cols=119 Identities=20% Similarity=0.314 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHhhhcCccchhhhHHhhhhhccccccccccCCcchhhHHHHHHhcC-CchhHHhhhhhhhhhhccCC
Q psy5930 430 FLPLLRNLLQGLNSLQSGLHKQQMKDLFVELCLTVPVRLSSLLPYLPMLMDPLVSALNG-SSTLISQGLRTLELCVDNLQ 508 (2426)
Q Consensus 430 ilPLLp~lLe~Ln~Ll~~~~~~~~RdL~VELCLTVPvRLS~LLPyL~~LM~PLV~AL~~-~~eLvsqGLRTLElcVDNLt 508 (2426)
+=|+||.+.|+|-..- .+.+---+.=+-||... --=..++|.||.|+.||-.||+. +++.+.-+|++|-.-|-.
T Consensus 36 y~~~Lpif~dGL~Et~-~Py~flA~~g~~dll~~--~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~-- 110 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETE-HPYRFLARQGIKDLLER--GGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTS-- 110 (183)
T ss_pred hhhHHHHHHhhhhccC-ccHHHHHHHHHHHHHHh--cchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh--
Confidence 4488999999885543 23333455556666655 22345899999999999999987 778999999888665432
Q ss_pred cchhhhccchHHHHHHHHHH----hhcC-------CCCch---hhHHHHHHhhccCCCc
Q psy5930 509 PDFLYDHIQPVRADLMQALW----RSLR-------SPNEQ---VAHVAYRVLGKFGGGN 553 (2426)
Q Consensus 509 pdfLdp~~~pV~~elm~ALw----~~Lk-------p~~~~---~~~~a~RILGKLGGrN 553 (2426)
.+-.-|.+-|..+.|+..|. +... -...+ .-..|++.|-+-||.+
T Consensus 111 ~~~vG~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~d 169 (183)
T PF10274_consen 111 SDMVGEALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPD 169 (183)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChh
Confidence 34455667777788877776 3211 00111 4457899999999975
No 25
>KOG1943|consensus
Probab=74.95 E-value=2.3e+02 Score=40.98 Aligned_cols=325 Identities=17% Similarity=0.160 Sum_probs=163.1
Q ss_pred HHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHhhCCchhhcchh--hHHHHHHHHHH---hcc-CchhhhhHhHHHHH
Q psy5930 726 VLIDAIAVILGHEDKELCKPGYIALKCIMETATCITGSIENACNLP--LMEYLAERMCN---LCY-ERAWYAKLGGCYAI 799 (2426)
Q Consensus 726 vl~DAi~~~l~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~p--~~~~L~~rf~~---~Cy-~~~w~~K~gG~~gi 799 (2426)
.++|-+..+|++....++=.|...+..+.. ++| +-.+.....|. =|- +.+|. |||+++
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~-------------rlp~~Lad~vi~svid~~~p~e~~~aWH---gacLaL 404 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTS-------------RLPPELADQVIGSVIDLFNPAEDDSAWH---GACLAL 404 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHc-------------cCcHHHHHHHHHHHHHhcCcCCchhHHH---HHHHHH
Confidence 378888999999999999766666655533 333 11233333333 333 56798 999999
Q ss_pred HHHHHh--chHHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcC--------------------CCC
Q psy5930 800 KFFYNT--MAIKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCAT--------------------PIK 857 (2426)
Q Consensus 800 ~~l~~~--~~~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~--------------------~~~ 857 (2426)
.-|... +.+.-+-+-..-|++||.|=-+--+--+...++|.|-=.+....|...+ +..
T Consensus 405 AELA~rGlLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDre 484 (1133)
T KOG1943|consen 405 AELALRGLLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDRE 484 (1133)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCch
Confidence 887643 2455555666667777777554444444444454443222222211110 000
Q ss_pred CC-----------------Cchhhhhh-----------h--------------hhhHHHHHHHHhhh-cCCCChHHHHHH
Q psy5930 858 EP-----------------VDAETLTV-----------Q--------------SKALSEVTNELTRN-ITLPNDLLREQS 894 (2426)
Q Consensus 858 ~~-----------------~~~~~~~~-----------~--------------~~~~~~~~~~lv~e-L~s~n~~VR~~a 894 (2426)
-. +-+-+.+. . +....-++.+++.- ++|-...+|+.+
T Consensus 485 vncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irela 564 (1133)
T KOG1943|consen 485 VNCRRAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELA 564 (1133)
T ss_pred hhHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHH
Confidence 00 00000000 0 01122345556655 889999999999
Q ss_pred HHHHHHHHHHhCCchhhccccchhhhhccCCCCccccccCchhhhHhhhhhhhhh----cccCCCccccCcchhhHHHHH
Q psy5930 895 MYLLQVFAETQGKSVVQVMEPHKDVLADIIPPKKLLIRNHSANAQIGLMEGNTFC----QSLTPRLFTTDMSIHEHSSFF 970 (2426)
Q Consensus 895 q~~L~~lae~t~~~v~ell~p~k~~Ll~~I~~Kpl~lRalpf~~QIG~idaitfc----l~L~p~~l~~~~~~~el~rll 970 (2426)
-.+|..|+...-+-+... +--.|++-+-.+ +..+++|..-|..+. ..+.|-+..+++ .+..-+.
T Consensus 565 a~aL~~Ls~~~pk~~a~~---~L~~lld~~ls~-------~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e--~~i~~l~ 632 (1133)
T KOG1943|consen 565 AYALHKLSLTEPKYLADY---VLPPLLDSTLSK-------DASMRHGVFLAAGEVIGALRKLEPVIKGLDE--NRIAGLL 632 (1133)
T ss_pred HHHHHHHHHhhHHhhccc---chhhhhhhhcCC-------ChHHhhhhHHHHHHHHHHhhhhhhhhhhhHH--HHhhhhh
Confidence 999999987654333311 111223333333 457999998887764 444443333331 1111122
Q ss_pred HHHHHhhccCchhhhcCCCCCCccccchHH-HHHHHHHHhhhc--CCch-hhHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q psy5930 971 QEITNICESSDQALMKLPCYKPISSLVPLR-KAAMRALASWHY--VPNC-SQKIFNTLFAALERPNPELQEAAFQAMKTF 1046 (2426)
Q Consensus 971 ~E~l~LadadD~~l~k~~~~k~~~~lv~LR-v~ci~lL~~~~~--~~~~-~~rIi~vfFKsL~s~s~ei~~aA~~gLk~v 1046 (2426)
+-.-.+||. .-|+....++.+= -..|+-+++... .++| ..+--.+.=+.++.+| .|.++|.++..++
T Consensus 633 ~ii~~~~~~--------~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l 703 (1133)
T KOG1943|consen 633 SIIPPICDR--------YFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDL 703 (1133)
T ss_pred hhccHHHHH--------HhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHH
Confidence 222223321 2233222222211 112232222211 1111 1122223445666666 8999999999998
Q ss_pred HccCCCChhhHHHhhHHH-HhhhcCCCCC-CHhHHHHHHHhhhhCC
Q psy5930 1047 VNGSPIDLKSVYEVMKPL-LLTLGDYRNL-NLVTARKLSYIVQPFP 1090 (2426)
Q Consensus 1047 L~~~~~~~e~L~q~LRPi-L~nLsD~k~L-tv~gLegLarLLeLL~ 1090 (2426)
.+...+..+..-+ |+ ..-|+.-++. +..--+|+.--++.|+
T Consensus 704 ~s~y~~~d~~~~~---~li~~~ls~~~~~~~~~~r~g~~lal~~lp 746 (1133)
T KOG1943|consen 704 VSTYVKADEGEEA---PLITRYLSRLTKCSEERIRRGLILALGVLP 746 (1133)
T ss_pred HHHHHhcCchhhh---HHHHHHHHHhcCchHHHHHHHHHHHHccCc
Confidence 8654332222111 22 3333444444 5555666666677666
No 26
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=74.47 E-value=10 Score=37.94 Aligned_cols=77 Identities=26% Similarity=0.246 Sum_probs=56.0
Q ss_pred cCcHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHhcCccHHHHHHHhhhcCchhhH
Q psy5930 2296 QGLWHRVTLSLEKMAVEGLLKQNRMQNRAPSVADCYDFEPDHAPQQQDIIDQLAEMYSALREEDMWFGLWQKNAKHKETL 2375 (2426)
Q Consensus 2296 ~naW~~ai~~LE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DaL~eLY~~L~E~D~~~GlWrrra~~~ET~ 2375 (2426)
.+.|..|+.+.|...... + .+ + ....+=.|+..|-.+++.+--+.+.++ .....++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~-------------------~--~~-~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~ 57 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELD-------------------P--TN-P-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN 57 (84)
T ss_dssp TT-HHHHHHHHHHHHHHH-------------------C--GT-H-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH
T ss_pred CccHHHHHHHHHHHHHHC-------------------C--CC-h-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC
Confidence 367899999999977621 0 00 1 222344589999999999999999988 5444444
Q ss_pred ------HHHHHHHhccHHHHHHHHHHH
Q psy5930 2376 ------YALAYEQQGFYEQALKAYEVT 2396 (2426)
Q Consensus 2376 ------~ALs~EQ~G~w~~AQ~~YE~a 2396 (2426)
.|-+|.+.|.|++|.++|++|
T Consensus 58 ~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 58 PDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 478999999999999999976
No 27
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=73.75 E-value=4.5e+02 Score=41.06 Aligned_cols=81 Identities=12% Similarity=0.112 Sum_probs=53.3
Q ss_pred hhHHHHHHHHHH-hccCchhhhhHhHHHHHHHHHHhc---hHHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHH
Q psy5930 771 PLMEYLAERMCN-LCYERAWYAKLGGCYAIKFFYNTM---AIKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLK 846 (2426)
Q Consensus 771 p~~~~L~~rf~~-~Cy~~~w~~K~gG~~gi~~l~~~~---~~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~ 846 (2426)
+++..+.+-|.. .|+...- ...-++-.|+-+..++ .--.-..+|-+|++.+..+|.... ..++++.+-+++.
T Consensus 1133 ~iW~~l~~hf~~vg~~~n~~-va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~---~~eVrE~ILeCv~ 1208 (1780)
T PLN03076 1133 SIWHVLSDFFVTIGCSENLS-IAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSN---AVEIRELIIRCVS 1208 (1780)
T ss_pred hHHHHHHHHHHHhcCCcchh-HHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcC---chHHHHHHHHHHH
Confidence 678889999999 4775432 2222222232333333 122446788999999999998443 4478899999999
Q ss_pred HHHHHHcCC
Q psy5930 847 QLIVLCATP 855 (2426)
Q Consensus 847 ~ll~~~~~~ 855 (2426)
.|+..+...
T Consensus 1209 qmI~s~~~n 1217 (1780)
T PLN03076 1209 QMVLSRVNN 1217 (1780)
T ss_pred HHHHHHHhh
Confidence 998876543
No 28
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=72.13 E-value=2.3e+02 Score=36.41 Aligned_cols=203 Identities=14% Similarity=0.210 Sum_probs=111.7
Q ss_pred cCchhHHHHHHHHHHHHHhcCCCCCCCCCccCchhhHHHHHHHHHHHHHhhhccccCCCCCCcchHHHHHHHHHHHhh-h
Q psy5930 1812 SSITKVIRLVHALLCRLMSTFPTEPISSNVASKREELDHLYVCVSKVIYEGLSNYEKNPTATCSTLYGTVMMLKAACM-N 1890 (2426)
Q Consensus 1812 ~~n~~i~~~l~~ll~rll~~~p~~~~~~~~~~~~~e~~~f~~~l~~~i~e~L~~~~~~~~~~~~~~~~~l~lL~~~~~-~ 1890 (2426)
.+++.+...+..+|..++..+....... ..+..=.+.+.+-=.+.|+.+|++-. ..-..++|.+|.++.. +
T Consensus 16 ~n~~~~~~~~~~~L~~~l~~ls~~~~~~--~~g~~l~~~iL~~~~k~lyr~L~~~~------~~~~~~~LrLL~~iv~f~ 87 (330)
T PF11707_consen 16 VNNHSLLSLVSSVLALLLKKLSSDLSFQ--SYGLELIRSILQNHLKLLYRSLSSSK------PSLTNPALRLLTAIVSFD 87 (330)
T ss_pred CCChhhHHHHHHHHHHHHHHhccchhHH--HHHHHHHHHHHHHHHHHHHHHhCcCc------HHHHHHHHHHHHHHHccC
Confidence 3444455555566666665555322100 00111111222222456666665521 2334478999999998 5
Q ss_pred CchhhhHhhHHH---HHHHHHHHHHhhccCCCC-----CCccchHHHHHHHHHHHhHhhhcCCHHHHHHHHH------HH
Q psy5930 1891 HPAYVDRFILEF---MRVIQRMAREHIATSTAD-----APQQVGGELLIYCLDLVKTRFCSMSQETRKQFIG------TI 1956 (2426)
Q Consensus 1891 ~p~~iD~~l~~l---mk~l~kl~keHl~~~~~~-----~~~~~~~~ll~~~leLl~~Rv~~lg~d~Rr~fls------~l 1956 (2426)
.+.....++..| +++|.|+.+---...... ....+-+..|...+-+++. .+++-|+.+|+ .+
T Consensus 88 ~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F~Lsfl~~----~~~~~~~~lL~~~~~~~~l 163 (330)
T PF11707_consen 88 GGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRFWLSFLSS----GDPELKRDLLSQKKLMSAL 163 (330)
T ss_pred CHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHHHHHHHcc----CCHHHHHHHHHcCchHHHH
Confidence 556555554444 344444432222111100 0013344567777777764 46677777764 33
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHHhhccccCCCCCCChhHH---HHHHHHHHHHHhhcCc----cHHHHHHHHHHHHhcC
Q psy5930 1957 ILGLIDKTPDIKVMKAIIKMTEEWLKVNKVEQNNVPNLKEK---CIILVKLMHFVEKRFP----DLNTMFLEIVLYVYMD 2029 (2426)
Q Consensus 1957 ~~~LiekS~d~~ll~~Il~iv~~Wv~~~~~~~~~~PtlKEK---a~lL~KM~~fe~r~~~----~L~~~flelV~~Iy~d 2029 (2426)
.-.| .+ .+.+++..||+.+++=|.. +...-++.|=| ...|.|+.+...+..+ +......++++.++.|
T Consensus 164 ~k~l-~~-D~~~~v~~iL~~l~~~Vl~---~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~ 238 (330)
T PF11707_consen 164 FKGL-RK-DPPETVILILETLKDKVLK---DSSVSRSTKCKLFNEWTLSQLASLYSRDGEDEKSSVADLVHEFLLALCTD 238 (330)
T ss_pred Hhcc-cC-CCHHHHHHHHHHHHHHhcc---CCCCChhhhhhhcCHHHHHHHHHHhcccCCcccchHHHHHHHHHHHHhcC
Confidence 3322 23 7899999999999987764 22233444422 2366778777777666 6888888888888888
Q ss_pred Cc
Q psy5930 2030 EN 2031 (2426)
Q Consensus 2030 ~~ 2031 (2426)
|.
T Consensus 239 p~ 240 (330)
T PF11707_consen 239 PK 240 (330)
T ss_pred CC
Confidence 76
No 29
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=71.29 E-value=94 Score=39.71 Aligned_cols=64 Identities=17% Similarity=0.234 Sum_probs=49.0
Q ss_pred cchhHHHhHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccccCCCCh---HHHHHHHHHhhcCCChhhhhHHHHHHHHHH
Q psy5930 678 LIKELRKDSLLYTVLVVRHYTLVAITQQTGPFPLYGKSALLEGTMDP---LVLIDAIAVILGHEDKELCKPGYIALKCIM 754 (2426)
Q Consensus 678 ~~~~l~~~a~~f~~~v~rhf~l~~i~~~~~~~~~~~~~~~~~~~ld~---~vl~DAi~~~l~~~~~~~~~~~~~~l~~~~ 754 (2426)
.-||++..-..++..+++|..-.-.. ++| ..++|+++.++.|.+.++.+.|..++..+.
T Consensus 132 ~yPe~r~~ff~LL~~i~~~~f~~l~~------------------lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll 193 (319)
T PF08767_consen 132 EYPEHRVNFFKLLRAINEHCFPALLQ------------------LPPEQFKLVIDSIVWGFKHTNREISETGLNILLELL 193 (319)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTHHHHH------------------S-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHH
T ss_pred hChHHHHHHHHHHHHHHHHhHHHHHc------------------CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 45788888888899988885321111 222 348999999999999999999999999988
Q ss_pred HHHHH
Q psy5930 755 ETATC 759 (2426)
Q Consensus 755 ~~~~~ 759 (2426)
+....
T Consensus 194 ~~~~~ 198 (319)
T PF08767_consen 194 NNVSK 198 (319)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 86654
No 30
>KOG1241|consensus
Probab=68.87 E-value=1.5e+02 Score=41.26 Aligned_cols=314 Identities=14% Similarity=0.103 Sum_probs=183.2
Q ss_pred HHHhhcCCChhhhhHHHHHHHHHHHHHHHhhCCchhhcchh--hHHHHHHHHHHh-ccCchhhhhHhHHHHHHHHHHhch
Q psy5930 731 IAVILGHEDKELCKPGYIALKCIMETATCITGSIENACNLP--LMEYLAERMCNL-CYERAWYAKLGGCYAIKFFYNTMA 807 (2426)
Q Consensus 731 i~~~l~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~p--~~~~L~~rf~~~-Cy~~~w~~K~gG~~gi~~l~~~~~ 807 (2426)
+..+|++..+..+..|..++..|... .+| .+..+...+.+. |-+++=.-|-|-|.+|+++++++.
T Consensus 95 il~tL~~~ep~~~s~Aaq~va~IA~~------------ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~ 162 (859)
T KOG1241|consen 95 ILRTLGSPEPRRPSSAAQCVAAIACI------------ELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDID 162 (859)
T ss_pred HHHHcCCCCCCccchHHHHHHHHHHh------------hCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCC
Confidence 56788999999998888888777441 223 334444555443 334444699999999999999997
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhhhhhhhhHHHHHHHHhhhcCCCC
Q psy5930 808 IKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAETLTVQSKALSEVTNELTRNITLPN 887 (2426)
Q Consensus 808 ~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~eL~s~n 887 (2426)
+.=+.++--+++-|+..-+. +.|.++.++=.|..+|..-|......-..+ ..+ +.+-..|||-++.+
T Consensus 163 pevl~~~sN~iLtaIv~gmr--k~e~s~~vRLaa~~aL~nsLef~~~nF~~E-------~er----n~iMqvvcEatq~~ 229 (859)
T KOG1241|consen 163 PEVLEQQSNDILTAIVQGMR--KEETSAAVRLAALNALYNSLEFTKANFNNE-------MER----NYIMQVVCEATQSP 229 (859)
T ss_pred HHHHHHHHhHHHHHHHhhcc--ccCCchhHHHHHHHHHHHHHHHHHHhhccH-------hhh----ceeeeeeeecccCC
Confidence 77677777777777766553 556667777788888888887765332222 112 23455577776555
Q ss_pred h-HHHHHHHHHHHHHHHHhCCchhhccccchhhhhccCCCCccccccCchhhhHhhhhhhhhhcc---------------
Q psy5930 888 D-LLREQSMYLLQVFAETQGKSVVQVMEPHKDVLADIIPPKKLLIRNHSANAQIGLMEGNTFCQS--------------- 951 (2426)
Q Consensus 888 ~-~VR~~aq~~L~~lae~t~~~v~ell~p~k~~Ll~~I~~Kpl~lRalpf~~QIG~idaitfcl~--------------- 951 (2426)
. .||.+|..||-.|..+. .+-|.||=+.=+=+|..+ +..+-+.++. +.||-|--+
T Consensus 230 d~~i~~aa~~ClvkIm~Ly----Y~~m~~yM~~alfaitl~----amks~~deVa-lQaiEFWsticeEEiD~~~e~~e~ 300 (859)
T KOG1241|consen 230 DEEIQVAAFQCLVKIMSLY----YEFMEPYMEQALFAITLA----AMKSDNDEVA-LQAIEFWSTICEEEIDLAIEYGEA 300 (859)
T ss_pred cHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH----HHcCCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 89999999998777643 344555433322122211 1112223333 234444222
Q ss_pred ----cCCCccccCc-chhhHHHHHHHHHHhhccCc--hhhhcCCCCCCccccchHHHHHHHHHHhhhcCCchhhHHHHHH
Q psy5930 952 ----LTPRLFTTDM-SIHEHSSFFQEITNICESSD--QALMKLPCYKPISSLVPLRKAAMRALASWHYVPNCSQKIFNTL 1024 (2426)
Q Consensus 952 ----L~p~~l~~~~-~~~el~rll~E~l~LadadD--~~l~k~~~~k~~~~lv~LRv~ci~lL~~~~~~~~~~~rIi~vf 1024 (2426)
++|.-+-|.. ....+.-.|.|+|.--|.+| ..+ +.-+-=-+|+.+++.|-...-.. -+==|
T Consensus 301 ~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdW----------np~kAAg~CL~l~A~~~~D~Iv~--~Vl~F 368 (859)
T KOG1241|consen 301 VDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDW----------NPAKAAGVCLMLFAQCVGDDIVP--HVLPF 368 (859)
T ss_pred hhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccC----------cHHHHHHHHHHHHHHHhcccchh--hhHHH
Confidence 2221111110 00112223444444322111 112 11112357898888876553322 12237
Q ss_pred HH-hhcCCCHHHHHHHHHHHHHHHccC--CCChhhHHHhhHHHHhhhcCCCCCCH-hHHHHHHHhhhhCC
Q psy5930 1025 FA-ALERPNPELQEAAFQAMKTFVNGS--PIDLKSVYEVMKPLLLTLGDYRNLNL-VTARKLSYIVQPFP 1090 (2426)
Q Consensus 1025 FK-sL~s~s~ei~~aA~~gLk~vL~~~--~~~~e~L~q~LRPiL~nLsD~k~Ltv-~gLegLarLLeLL~ 1090 (2426)
+| ++.+++=+=.+||-.+.-.++.+. .+++....|.|.-|+--.+|+--.-. ..--.|.|+.+.++
T Consensus 369 iee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~ 438 (859)
T KOG1241|consen 369 IEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLP 438 (859)
T ss_pred HHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhch
Confidence 77 899999999999999999999874 46677788888777666666532111 11234555555554
No 31
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=65.26 E-value=4.2e+02 Score=36.17 Aligned_cols=302 Identities=18% Similarity=0.188 Sum_probs=149.9
Q ss_pred HHHhhcCCChhhhhHHHHHHHHHHHHHHHhhCCchhhcchhhHHHHHHHHHHhccCchhhhhHhHHHHHHHHHHhch--H
Q psy5930 731 IAVILGHEDKELCKPGYIALKCIMETATCITGSIENACNLPLMEYLAERMCNLCYERAWYAKLGGCYAIKFFYNTMA--I 808 (2426)
Q Consensus 731 i~~~l~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~p~~~~L~~rf~~~Cy~~~w~~K~gG~~gi~~l~~~~~--~ 808 (2426)
|..+|...+.+..+.+..+|+.+.++... . . .......-+..+-+++.-..|.-+|..|.-++++-. .
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~---~----~---l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~ 112 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSP---D----S---LLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAA 112 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCH---H----H---HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 66777777777777777777777664211 1 0 133444555555566777888888888887776552 4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhhhhhhhhHHHH-----HHHHhhhc
Q psy5930 809 KWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAETLTVQSKALSEV-----TNELTRNI 883 (2426)
Q Consensus 809 ~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~lv~eL 883 (2426)
.|+.+ .+++..++++|.|--.++.. .|..+|..+.+ . .. .+..+ ...|..-+
T Consensus 113 ~~~~~--~~l~~~i~~~L~~~d~~Va~----~A~~~L~~l~~----~-~~------------~~~~l~~~~~~~~L~~l~ 169 (503)
T PF10508_consen 113 QLLVD--NELLPLIIQCLRDPDLSVAK----AAIKALKKLAS----H-PE------------GLEQLFDSNLLSKLKSLM 169 (503)
T ss_pred HHhcC--ccHHHHHHHHHcCCcHHHHH----HHHHHHHHHhC----C-ch------------hHHHHhCcchHHHHHHHH
Confidence 66666 56899999999876655433 44444444432 1 01 11112 55566666
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCchhhccc-cchhhhhccCCCCccccccCchhhhHhhhhhhhhhcccCCCccccCcc
Q psy5930 884 TLPNDLLREQSMYLLQVFAETQGKSVVQVME-PHKDVLADIIPPKKLLIRNHSANAQIGLMEGNTFCQSLTPRLFTTDMS 962 (2426)
Q Consensus 884 ~s~n~~VR~~aq~~L~~lae~t~~~v~ell~-p~k~~Ll~~I~~Kpl~lRalpf~~QIG~idaitfcl~L~p~~l~~~~~ 962 (2426)
.++|+.||-.+-.++-.++..+......+.. ..-+.++.-+.+.-. -.|...++-++-... .|.-..|=
T Consensus 170 ~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDi-------Lvqlnalell~~La~-~~~g~~yL-- 239 (503)
T PF10508_consen 170 SQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDI-------LVQLNALELLSELAE-TPHGLQYL-- 239 (503)
T ss_pred hccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccH-------HHHHHHHHHHHHHHc-ChhHHHHH--
Confidence 6779999975555554444322211111100 011111111111111 123333333322222 22111100
Q ss_pred hhhHHHHHHHHHHhhc--cCchhhhcCCCCCCccccchHHHHHHHHHHhhhcCCchh---hHHHHHHHHhhcCCCHHHHH
Q psy5930 963 IHEHSSFFQEITNICE--SSDQALMKLPCYKPISSLVPLRKAAMRALASWHYVPNCS---QKIFNTLFAALERPNPELQE 1037 (2426)
Q Consensus 963 ~~el~rll~E~l~Lad--adD~~l~k~~~~k~~~~lv~LRv~ci~lL~~~~~~~~~~---~rIi~vfFKsL~s~s~ei~~ 1037 (2426)
+-..++..+..+.. .+|+ +...-+++=+....--++.. ..+++. ..++..+|..+.+.++.+..
T Consensus 240 --~~~gi~~~L~~~l~~~~~dp--------~~~~~~l~g~~~f~g~la~~-~~~~v~~~~p~~~~~l~~~~~s~d~~~~~ 308 (503)
T PF10508_consen 240 --EQQGIFDKLSNLLQDSEEDP--------RLSSLLLPGRMKFFGNLARV-SPQEVLELYPAFLERLFSMLESQDPTIRE 308 (503)
T ss_pred --HhCCHHHHHHHHHhccccCC--------cccchhhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHhCCCChhHHH
Confidence 00012222222211 1111 11111222121111112111 111222 15677888999999999999
Q ss_pred HHHHHHHHHHccCCCChhhH-HH---hhHHHHhhhcCCCC-----CCHhHHHHHHHhhh
Q psy5930 1038 AAFQAMKTFVNGSPIDLKSV-YE---VMKPLLLTLGDYRN-----LNLVTARKLSYIVQ 1087 (2426)
Q Consensus 1038 aA~~gLk~vL~~~~~~~e~L-~q---~LRPiL~nLsD~k~-----Ltv~gLegLarLLe 1087 (2426)
+|.+++=.+ ..+.--++.| ++ .++-+|...+++.+ +-+..|+.|+.++.
T Consensus 309 ~A~dtlg~i-gst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~ 366 (503)
T PF10508_consen 309 VAFDTLGQI-GSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILT 366 (503)
T ss_pred HHHHHHHHH-hCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh
Confidence 999999854 3333335555 22 27788887777532 34566777776664
No 32
>KOG2274|consensus
Probab=64.85 E-value=5.5e+02 Score=36.76 Aligned_cols=143 Identities=17% Similarity=0.196 Sum_probs=86.2
Q ss_pred HHHHhhhcCCCChHHHHHHHHHHHHHHHHhCCchhhccccchhhhhccCCCC--ccccccCchhhhHhhhhhhhhhcccC
Q psy5930 876 TNELTRNITLPNDLLREQSMYLLQVFAETQGKSVVQVMEPHKDVLADIIPPK--KLLIRNHSANAQIGLMEGNTFCQSLT 953 (2426)
Q Consensus 876 ~~~lv~eL~s~n~~VR~~aq~~L~~lae~t~~~v~ell~p~k~~Ll~~I~~K--pl~lRalpf~~QIG~idaitfcl~L~ 953 (2426)
+-++.....||+++||.+|...++.+...-| +..-|...+-++ +|++| |+..|---.|.-..-
T Consensus 6 ii~~L~~~ls~d~~vr~~AE~~l~qle~~~~---------f~~aL~~va~~~~~sl~lR------Q~A~v~L~~yie~hW 70 (1005)
T KOG2274|consen 6 IIELLSGSLSADQNVRSQAETQLKQLELTEG---------FGVALAEVAANKDASLPLR------QIALVLLKRYIEKHW 70 (1005)
T ss_pred HHHHHHhhcCCChhHHHHHHHHHhccccchH---------HHHHHHHHHhCcccCchHH------HHHHHHHHHHHHHhC
Confidence 3345567789999999999999977653222 222222222222 34445 777776666665443
Q ss_pred CCccc-cC--c-chhhHHHHHHHH-HHhhccCchhhhcCCCCCCccccchHHHHHHHHHHhhhcCCchhhHHHHHHHHhh
Q psy5930 954 PRLFT-TD--M-SIHEHSSFFQEI-TNICESSDQALMKLPCYKPISSLVPLRKAAMRALASWHYVPNCSQKIFNTLFAAL 1028 (2426)
Q Consensus 954 p~~l~-~~--~-~~~el~rll~E~-l~LadadD~~l~k~~~~k~~~~lv~LRv~ci~lL~~~~~~~~~~~rIi~vfFKsL 1028 (2426)
-+.++ |- . ..++.++++.|. +.+++ ++.+-.+ .-+.-+++.|. +.-+|+.--..+.+..|++
T Consensus 71 ~~~~E~fr~~~~~~e~~K~~IRe~Ll~~l~-~sn~ki~--------~~vay~is~Ia----~~D~Pd~WpElv~~i~~~l 137 (1005)
T KOG2274|consen 71 SPNFEAFRYPLIVSEEVKALIREQLLNLLD-DSNSKIR--------SAVAYAISSIA----AVDYPDEWPELVPFILKLL 137 (1005)
T ss_pred CChHhhccCCCcccHHHHHHHHHHHHhhhh-ccccccc--------hHHHHHHHHHH----hccCchhhHHHHHHHHHHH
Confidence 33333 22 1 235788888887 45676 3333221 22334444443 4456665556888999999
Q ss_pred cCCCHHHHHHHHHHHHHH
Q psy5930 1029 ERPNPELQEAAFQAMKTF 1046 (2426)
Q Consensus 1029 ~s~s~ei~~aA~~gLk~v 1046 (2426)
-+.|..=+..|-++|-++
T Consensus 138 ~~~n~n~i~~am~vL~el 155 (1005)
T KOG2274|consen 138 SSGNENSIHGAMRVLAEL 155 (1005)
T ss_pred hccchhhhhhHHHHHHHH
Confidence 988887888888888765
No 33
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=64.66 E-value=27 Score=36.48 Aligned_cols=112 Identities=13% Similarity=0.033 Sum_probs=72.5
Q ss_pred HHHHHHHhccCchhhhhHhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCC
Q psy5930 776 LAERMCNLCYERAWYAKLGGCYAIKFFYNTMAIKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATP 855 (2426)
Q Consensus 776 L~~rf~~~Cy~~~w~~K~gG~~gi~~l~~~~~~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~ 855 (2426)
+.+.++.++++..|+.+.+++.++..+....+..+-.-.+.++++.++.+|.|- ...+...|-.++..+. ..+
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~----~~~v~~~a~~~L~~l~---~~~ 80 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE----DEEVVKAALWALRNLA---AGP 80 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC----CHHHHHHHHHHHHHHc---cCc
Confidence 567777888888999999999999999887554443334458888999988872 2334444444444442 211
Q ss_pred CCCCCchhhhhhhhhhH-HHHHHHHhhhcCCCChHHHHHHHHHHHHHHH
Q psy5930 856 IKEPVDAETLTVQSKAL-SEVTNELTRNITLPNDLLREQSMYLLQVFAE 903 (2426)
Q Consensus 856 ~~~~~~~~~~~~~~~~~-~~~~~~lv~eL~s~n~~VR~~aq~~L~~lae 903 (2426)
+ + ...... .+++..++.-+.+.+..||+.|-.+|..+++
T Consensus 81 ---~---~---~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 81 ---E---D---NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred ---H---H---HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 0 0 001111 1245666666777788999988888877753
No 34
>KOG1248|consensus
Probab=64.20 E-value=5.3e+02 Score=37.94 Aligned_cols=216 Identities=19% Similarity=0.188 Sum_probs=121.5
Q ss_pred HHHHHHHHHHhcCChhHHHHhhHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhcCCCCCCCCCccCchhhHHHHHHHHHH
Q psy5930 1778 IALELLTLLITILDEGQILHIIKPLQRGLVACISSSITKVIRLVHALLCRLMSTFPTEPISSNVASKREELDHLYVCVSK 1857 (2426)
Q Consensus 1778 naLevL~il~~~~~~~~il~nl~~lq~lL~kcl~~~n~~i~~~l~~ll~rll~~~p~~~~~~~~~~~~~e~~~f~~~l~~ 1857 (2426)
.-|+.+..+....+.+.+.... .....--+++++.+|+-...+|..+++. | ++..-...+...|.+
T Consensus 635 slLdl~~~~a~~~~e~~vs~l~----~v~~~~e~~~~~~vQkK~yrlL~~l~~~-~---------s~~~~~~q~i~~I~n 700 (1176)
T KOG1248|consen 635 SLLDLLIALAPVQTESQVSKLF----TVDPEFENSSSTKVQKKAYRLLEELSSS-P---------SGEGLVEQRIDDIFN 700 (1176)
T ss_pred HHHHHHHhhhccccchhHHHHH----HhhHHhhccccHHHHHHHHHHHHHHhcC-C---------chhhHHHHHHHHHHH
Confidence 3456666666666666554444 4444455677899999999999888875 2 122334456666666
Q ss_pred HHHhhhccccCCCCCCcchHHHHHHHHHHHhhhCchhhhHhhHHHHHHHHHHHHHhhcc-----------------CCCC
Q psy5930 1858 VIYEGLSNYEKNPTATCSTLYGTVMMLKAACMNHPAYVDRFILEFMRVIQRMAREHIAT-----------------STAD 1920 (2426)
Q Consensus 1858 ~i~e~L~~~~~~~~~~~~~~~~~l~lL~~~~~~~p~~iD~~l~~lmk~l~kl~keHl~~-----------------~~~~ 1920 (2426)
.+.+.+++. ....-.+.+.+|+.+.+-.|.+.+.+++..+.-.-=..|||-.. ....
T Consensus 701 ~L~ds~qs~------~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~ 774 (1176)
T KOG1248|consen 701 SLLDSFQSS------SSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDD 774 (1176)
T ss_pred HHHHHHhcc------chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcc
Confidence 666666652 12334467899999999999888777776554332222333210 0000
Q ss_pred CCccchHHHHHHHHHHHhHhhhcCCHHHHHHHHHHHHH--HHh---ccCCCHHHHHHHHHHHHHHhhccccCCCCCCChh
Q psy5930 1921 APQQVGGELLIYCLDLVKTRFCSMSQETRKQFIGTIIL--GLI---DKTPDIKVMKAIIKMTEEWLKVNKVEQNNVPNLK 1995 (2426)
Q Consensus 1921 ~~~~~~~~ll~~~leLl~~Rv~~lg~d~Rr~fls~l~~--~Li---ekS~d~~ll~~Il~iv~~Wv~~~~~~~~~~PtlK 1995 (2426)
+.. -...-|...+.+|+. .-+|.++|..--+ |++ .+. ..-.|...|..+++++-.|+..+ -|-+.
T Consensus 775 g~e-~~~~~lnefl~~Isa--gl~gd~~~~~as~-Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~------sreI~ 844 (1176)
T KOG1248|consen 775 GNE-PASAILNEFLSIISA--GLVGDSTRVVASD-IVAITHILQEFKNILDDETLEKLISMVCLYLASN------SREIA 844 (1176)
T ss_pred ccc-chHHHHHHHHHHHHh--hhcccHHHHHHHH-HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcC------CHHHH
Confidence 000 023344555555544 2456444432221 221 111 36678899999999999999652 23334
Q ss_pred HHHHHHHHHHHHHhhcCcc-HHHHHHH-HHHHH
Q psy5930 1996 EKCIILVKLMHFVEKRFPD-LNTMFLE-IVLYV 2026 (2426)
Q Consensus 1996 EKa~lL~KM~~fe~r~~~~-L~~~fle-lV~~I 2026 (2426)
.-|.=..|+.. ..+|+ +...|++ |+-.|
T Consensus 845 kaAI~fikvlv---~~~pe~~l~~~~~~LL~sl 874 (1176)
T KOG1248|consen 845 KAAIGFIKVLV---YKFPEECLSPHLEELLPSL 874 (1176)
T ss_pred HHHHHHHHHHH---HcCCHHHHhhhHHHHHHHH
Confidence 43444444433 36775 5555663 33344
No 35
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=63.82 E-value=3.9e+02 Score=33.73 Aligned_cols=45 Identities=24% Similarity=0.332 Sum_probs=36.7
Q ss_pred hhHHHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCCh-hhHHHhh
Q psy5930 1017 SQKIFNTLFAALERPNPELQEAAFQAMKTFVNGSPIDL-KSVYEVM 1061 (2426)
Q Consensus 1017 ~~rIi~vfFKsL~s~s~ei~~aA~~gLk~vL~~~~~~~-e~L~q~L 1061 (2426)
...++.+|++.|.+.++++..+|-+|+-..+-...+.. ..+++.|
T Consensus 112 ~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~L 157 (298)
T PF12719_consen 112 SKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRL 157 (298)
T ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 45899999999999999999999999988877666666 5555543
No 36
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=63.75 E-value=9 Score=32.40 Aligned_cols=24 Identities=38% Similarity=0.559 Sum_probs=20.2
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Q psy5930 2375 LYALAYEQQGFYEQALKAYEVTIK 2398 (2426)
Q Consensus 2375 ~~ALs~EQ~G~w~~AQ~~YE~a~~ 2398 (2426)
+.|-.|.+.|.|++|.++|+++..
T Consensus 4 ~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 4 NLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 568899999999999999999653
No 37
>KOG0212|consensus
Probab=62.83 E-value=5.4e+02 Score=35.03 Aligned_cols=343 Identities=19% Similarity=0.227 Sum_probs=203.2
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHh-hCCchhhcchhhHHHHHHHHHHhccCchhhhhHhHHHHHHHHHHhchHHHHHHHH
Q psy5930 737 HEDKELCKPGYIALKCIMETATCI-TGSIENACNLPLMEYLAERMCNLCYERAWYAKLGGCYAIKFFYNTMAIKWVYSHM 815 (2426)
Q Consensus 737 ~~~~~~~~~~~~~l~~~~~~~~~i-~~~~~~~~~~p~~~~L~~rf~~~Cy~~~w~~K~gG~~gi~~l~~~~~~~wl~~~~ 815 (2426)
+.+...++.|..++..+ .| +|.+. .+..+.++.....||.++.=.-+.-||-.+-- +.+....=+.-+.
T Consensus 54 s~~~n~rkGgLiGlAA~-----~iaLg~~~----~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYN-iaKv~k~~v~~~F 123 (675)
T KOG0212|consen 54 SPHANMRKGGLIGLAAV-----AIALGIKD----AGYLEKIVPPVLNCFSDQDSQVRYYACESLYN-IAKVAKGEVLVYF 123 (675)
T ss_pred CcccccccchHHHHHHH-----HHHhcccc----HHHHHHhhHHHHHhccCccceeeeHhHHHHHH-HHHHhccCcccch
Confidence 44666677776666432 22 23322 24778899999999999999999999988733 3334333344455
Q ss_pred HHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhhhhhhhhHHHHHHHHhhhcCCCChHHHHHHH
Q psy5930 816 FVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAETLTVQSKALSEVTNELTRNITLPNDLLREQSM 895 (2426)
Q Consensus 816 ~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~eL~s~n~~VR~~aq 895 (2426)
-+|..+|--+..|....+-.++ +++..+++-..+.... .=.++..+..|-+.+.--|+.+|...-
T Consensus 124 n~iFdvL~klsaDsd~~V~~~a-----eLLdRLikdIVte~~~----------tFsL~~~ipLL~eriy~~n~~tR~flv 188 (675)
T KOG0212|consen 124 NEIFDVLCKLSADSDQNVRGGA-----ELLDRLIKDIVTESAS----------TFSLPEFIPLLRERIYVINPMTRQFLV 188 (675)
T ss_pred HHHHHHHHHHhcCCccccccHH-----HHHHHHHHHhcccccc----------ccCHHHHHHHHHHHHhcCCchHHHHHH
Confidence 6778888888888877666553 4788888766554221 113566676677777777888898776
Q ss_pred HHHHHHHHHhCCchhhccccchhhhhccCCCCccccccCchhhhHhhhhhhhhhcccCCCccc-cCcchhhHHH----HH
Q psy5930 896 YLLQVFAETQGKSVVQVMEPHKDVLADIIPPKKLLIRNHSANAQIGLMEGNTFCQSLTPRLFT-TDMSIHEHSS----FF 970 (2426)
Q Consensus 896 ~~L~~lae~t~~~v~ell~p~k~~Ll~~I~~Kpl~lRalpf~~QIG~idaitfcl~L~p~~l~-~~~~~~el~r----ll 970 (2426)
+=|..+-...+ -+++ .|.-++-|.+|. ..++.+|..+ .+
T Consensus 189 ~Wl~~Lds~P~---~~m~---------------------------------~yl~~~ldGLf~~LsD~s~eVr~~~~t~l 232 (675)
T KOG0212|consen 189 SWLYVLDSVPD---LEMI---------------------------------SYLPSLLDGLFNMLSDSSDEVRTLTDTLL 232 (675)
T ss_pred HHHHHHhcCCc---HHHH---------------------------------hcchHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 66655543222 1111 122222233333 2222233221 11
Q ss_pred HHHHHhhccCchhhhcCCCCCCccccchHHHHHHHHHHhhhcCCch--hhHHHHHHHHhhcCCCHHHHHHHHHHHHHHHc
Q psy5930 971 QEITNICESSDQALMKLPCYKPISSLVPLRKAAMRALASWHYVPNC--SQKIFNTLFAALERPNPELQEAAFQAMKTFVN 1048 (2426)
Q Consensus 971 ~E~l~LadadD~~l~k~~~~k~~~~lv~LRv~ci~lL~~~~~~~~~--~~rIi~vfFKsL~s~s~ei~~aA~~gLk~vL~ 1048 (2426)
.|.|+=.+ .-|.+ ..+++.+.--.+-++.++|+..|-.=++++++
T Consensus 233 ~~fL~eI~---------------------------------s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~ 279 (675)
T KOG0212|consen 233 SEFLAEIR---------------------------------SSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVK 279 (675)
T ss_pred HHHHHHHh---------------------------------cCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhc
Confidence 11121111 12222 22688899999999999999999999999875
Q ss_pred cCCCChhhHHHh-hHHHHhhhcCCCCCCHhHHHHHHH--hhhhCCCcccHHH-H-HHHHHHHHHhhhhhhhhhcCCCCCC
Q psy5930 1049 GSPIDLKSVYEV-MKPLLLTLGDYRNLNLVTARKLSY--IVQPFPSSFSEKL-C-EQLLVNLKNLFENIVAQKENPPKNS 1123 (2426)
Q Consensus 1049 ~~~~~~e~L~q~-LRPiL~nLsD~k~Ltv~gLegLar--LLeLL~nyFkvei-G-~KLLdHLk~~~e~~~~~~~~~~~~~ 1123 (2426)
-.+..-=.-.++ |.-+|-.++|.-.-+.-.....-+ |+.+...+++.+= . .++.+-+.+. ...+.
T Consensus 280 i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~----------l~~~~ 349 (675)
T KOG0212|consen 280 IPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKY----------LSDDR 349 (675)
T ss_pred CCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHH----------hhcch
Confidence 432211111223 777888888876666666666666 7777777776521 0 1333333332 22345
Q ss_pred cchhHHHH--HHHhhccCchhHHhhH---------------HHHHHHHHHHHHhcCCCCCCC-CcchHHHHHhhCcHH
Q psy5930 1124 ETEKIIVV--IIGIFKESPAAKAQFI---------------EPLISLILENEHALSIGPYSP-YREPLVKYLLRYPTE 1183 (2426)
Q Consensus 1124 ~~~kii~a--IinIFHLLP~aa~~Fl---------------e~Lv~~Vl~lE~~L~~~~~SP-fR~PL~kfLnRyp~e 1183 (2426)
++.||++- |+-+||=.|..-..+. +++|..++.+=+.+..+.+|| +|.=|.--|++|.+|
T Consensus 350 ~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~~fl~sLL~~f~e~ 427 (675)
T KOG0212|consen 350 EETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNLRKFLLSLLEMFKED 427 (675)
T ss_pred HHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhhh
Confidence 66677655 7777777775433333 346777888888888888886 333333334444443
No 38
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=62.28 E-value=63 Score=34.03 Aligned_cols=94 Identities=16% Similarity=0.113 Sum_probs=69.3
Q ss_pred hhHHHHHHHHHHHHHHHhhCCchhhcchhhHHHHHHHHHHhccCchhhhhHhHHHHHHHHHHhchHHHHHHHHHHHHHHH
Q psy5930 743 CKPGYIALKCIMETATCITGSIENACNLPLMEYLAERMCNLCYERAWYAKLGGCYAIKFFYNTMAIKWVYSHMFVFVKAL 822 (2426)
Q Consensus 743 ~~~~~~~l~~~~~~~~~i~~~~~~~~~~p~~~~L~~rf~~~Cy~~~w~~K~gG~~gi~~l~~~~~~~wl~~~~~~ivraL 822 (2426)
|+.|..++..+.-. + |.. --..++.+.+-+..|.-++.|..+...|-++--++......- ..+..+|..+|
T Consensus 3 R~ggli~Laa~ai~---l-~~~----~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~-l~~f~~IF~~L 73 (97)
T PF12755_consen 3 RKGGLIGLAAVAIA---L-GKD----ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEI-LPYFNEIFDAL 73 (97)
T ss_pred hhHHHHHHHHHHHH---c-hHh----HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 56676666554221 1 211 235778899999999999999999999999998886665443 44889999999
Q ss_pred HHHhcCCCcccchhHHHHHHHHHHHHHH
Q psy5930 823 LFVMMDLTGEVSSGAIDEARRNLKQLIV 850 (2426)
Q Consensus 823 lfvlkD~p~e~~~~~~~~a~~~l~~ll~ 850 (2426)
.-.+.|.-+.|-+++ ++|.++++
T Consensus 74 ~kl~~D~d~~Vr~~a-----~~Ld~llk 96 (97)
T PF12755_consen 74 CKLSADPDENVRSAA-----ELLDRLLK 96 (97)
T ss_pred HHHHcCCchhHHHHH-----HHHHHHhc
Confidence 999999887766553 46666654
No 39
>KOG2171|consensus
Probab=61.51 E-value=7.6e+02 Score=36.33 Aligned_cols=352 Identities=14% Similarity=0.136 Sum_probs=199.6
Q ss_pred HHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHhhCCchhhcchhhHHHHHHHHHHhccCchhhhhHhHHHHHHHHHHhc
Q psy5930 727 LIDAIAVILGHEDKELCKPGYIALKCIMETATCITGSIENACNLPLMEYLAERMCNLCYERAWYAKLGGCYAIKFFYNTM 806 (2426)
Q Consensus 727 l~DAi~~~l~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~p~~~~L~~rf~~~Cy~~~w~~K~gG~~gi~~l~~~~ 806 (2426)
++-.+..|..+++...|+.|...+..+-+ ++|... -|.+..+..-|..|--+++=.-|...+.|+..++..+
T Consensus 119 ll~~L~q~~~S~~~~~rE~al~il~s~~~----~~~~~~----~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~ 190 (1075)
T KOG2171|consen 119 LLQFLFQSTKSPNPSLRESALLILSSLPE----TFGNTL----QPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYL 190 (1075)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHhhhh----hhcccc----chhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHh
Confidence 78899999999999999998877766544 445432 3667777788888888888889999999999999888
Q ss_pred h-HHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhhhhhhhhHHHHHHHH--hhhc
Q psy5930 807 A-IKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAETLTVQSKALSEVTNEL--TRNI 883 (2426)
Q Consensus 807 ~-~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--v~eL 883 (2426)
+ -+=..++..+++.+++.|+.++-.+=... .|.++++.+....-... ..-+..+.++++.- +..=
T Consensus 191 ~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~---~a~~~l~~l~El~e~~p---------k~l~~~l~~ii~~~l~Ia~n 258 (1075)
T KOG2171|consen 191 ENNKSEVDKFRDLLPSLLNVLQEVIQDGDDD---AAKSALEALIELLESEP---------KLLRPHLSQIIQFSLEIAKN 258 (1075)
T ss_pred ccchHHHHHHHHHhHHHHHHhHhhhhccchH---HHHHHHHHHHHHHhhch---------HHHHHHHHHHHHHHHHHhhc
Confidence 4 45556777888888888887665544333 34555544444332110 11122344433321 1122
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCchhhccccchhhhhccCCCCccccccCchhhhHhhhhhhhhhcccCCCccccCcch
Q psy5930 884 TLPNDLLREQSMYLLQVFAETQGKSVVQVMEPHKDVLADIIPPKKLLIRNHSANAQIGLMEGNTFCQSLTPRLFTTDMSI 963 (2426)
Q Consensus 884 ~s~n~~VR~~aq~~L~~lae~t~~~v~ell~p~k~~Ll~~I~~Kpl~lRalpf~~QIG~idaitfcl~L~p~~l~~~~~~ 963 (2426)
.+=+..+|..|-++|-.++|. .|.+-+..++ +++||- | + |+..-++. +-|
T Consensus 259 ~~l~~~~R~~ALe~ivs~~e~---------Ap~~~k~~~~-~~~~lv----~---~---------~l~~mte~-~~D--- 308 (1075)
T KOG2171|consen 259 KELENSIRHLALEFLVSLSEY---------APAMCKKLAL-LGHTLV----P---V---------LLAMMTEE-EDD--- 308 (1075)
T ss_pred ccccHHHHHHHHHHHHHHHHh---------hHHHhhhchh-hhccHH----H---H---------HHHhcCCc-ccc---
Confidence 344568999999999999985 5777777777 666661 0 0 11111110 000
Q ss_pred hhHHHHHHHHHHhhccCchhhhcCCCCCCccccchHHHHHHHHHHhhhcCCchhhHHHHHHHHhhcCCCHHHHHHHHHHH
Q psy5930 964 HEHSSFFQEITNICESSDQALMKLPCYKPISSLVPLRKAAMRALASWHYVPNCSQKIFNTLFAALERPNPELQEAAFQAM 1043 (2426)
Q Consensus 964 ~el~rll~E~l~LadadD~~l~k~~~~k~~~~lv~LRv~ci~lL~~~~~~~~~~~rIi~vfFKsL~s~s~ei~~aA~~gL 1043 (2426)
+-+.=+|..|+.- --+.|. .=..||..|+..+.=....--++..+=+-|.|.+.-=..||-.+|
T Consensus 309 --------~ew~~~d~~ded~-~~~~~~-------~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Al 372 (1075)
T KOG2171|consen 309 --------DEWSNEDDLDEDD-EETPYR-------AAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLAL 372 (1075)
T ss_pred --------hhhcccccccccc-ccCcHH-------HHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 1111111111111 001111 223345555544432222223444444566777777778888888
Q ss_pred HHHHccCCCChhhHHHh-hHHHHhhhcCC-CCCCHhHHHHHHHhhhhCCCcccHHHHHHHHHHHHHhhhhhhhhhcCCCC
Q psy5930 1044 KTFVNGSPIDLKSVYEV-MKPLLLTLGDY-RNLNLVTARKLSYIVQPFPSSFSEKLCEQLLVNLKNLFENIVAQKENPPK 1121 (2426)
Q Consensus 1044 k~vL~~~~~~~e~L~q~-LRPiL~nLsD~-k~Ltv~gLegLarLLeLL~nyFkveiG~KLLdHLk~~~e~~~~~~~~~~~ 1121 (2426)
-.+-.+.....+-.+.. |-=++--|.|+ -+--..-+..+.-+-+=|.--+-..-.+++..-|-...| ..
T Consensus 373 s~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld---------~~ 443 (1075)
T KOG2171|consen 373 SVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLD---------ST 443 (1075)
T ss_pred HHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhc---------cc
Confidence 77777765555444444 33344456664 444445555555544444444444444444443333322 11
Q ss_pred CCcc--hhHHHHHHHhhccCch-hHHhhHHHHHHH
Q psy5930 1122 NSET--EKIIVVIIGIFKESPA-AKAQFIEPLISL 1153 (2426)
Q Consensus 1122 ~~~~--~kii~aIinIFHLLP~-aa~~Fle~Lv~~ 1153 (2426)
++.. ..-++|++|.|.-.|. .=..||+.|+.+
T Consensus 444 ~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~ 478 (1075)
T KOG2171|consen 444 QNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEK 478 (1075)
T ss_pred CchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 2222 3456789999987773 334677777764
No 40
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=58.97 E-value=2.4e+02 Score=35.12 Aligned_cols=188 Identities=15% Similarity=0.204 Sum_probs=100.5
Q ss_pred HHHHHHhcCchhHHHHHHHHHHHHHhcCCCCCCCCCccCchhhHHHHHHHHHHHHHhhhccccCCCCCCcchHHHHHHHH
Q psy5930 1805 GLVACISSSITKVIRLVHALLCRLMSTFPTEPISSNVASKREELDHLYVCVSKVIYEGLSNYEKNPTATCSTLYGTVMML 1884 (2426)
Q Consensus 1805 lL~kcl~~~n~~i~~~l~~ll~rll~~~p~~~~~~~~~~~~~e~~~f~~~l~~~i~e~L~~~~~~~~~~~~~~~~~l~lL 1884 (2426)
.|..+++++++.+..---.+|..+++.+|.+.- ...++..+. .+..+.|.+ ...+.+++.-+
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L------~~~ev~~L~----~F~~~rl~D--------~~~~~~~l~gl 64 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDFL------SRQEVQVLL----DFFCSRLDD--------HACVQPALKGL 64 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhc------cHHHHHHHH----HHHHHHhcc--------HhhHHHHHHHH
Confidence 466799999998888777889999999985321 123444444 444445544 22222333334
Q ss_pred HHHhhhCchhhhHhhHHHHHHHHHHHHHhhccCCCCCCc-cchHHHHHHHHHHHhHhhhcCCHHHHHHHHHHHHHHHhcc
Q psy5930 1885 KAACMNHPAYVDRFILEFMRVIQRMAREHIATSTADAPQ-QVGGELLIYCLDLVKTRFCSMSQETRKQFIGTIILGLIDK 1963 (2426)
Q Consensus 1885 ~~~~~~~p~~iD~~l~~lmk~l~kl~keHl~~~~~~~~~-~~~~~ll~~~leLl~~Rv~~lg~d~Rr~fls~l~~~Liek 1963 (2426)
.++. +.+.+-......+++.+.+ +-|..+ -.+.. ...-+++...++--..-+..|| ..|+.++++ ++|-
T Consensus 65 ~~L~-~~~~~~~~~~~~i~~~l~~--~~~~q~--~~q~~R~~~~~ll~~l~~~~~~~l~~~~----~~fv~~~i~-~~~g 134 (262)
T PF14500_consen 65 LALV-KMKNFSPESAVKILRSLFQ--NVDVQS--LPQSTRYAVYQLLDSLLENHREALQSMG----DDFVYGFIQ-LIDG 134 (262)
T ss_pred HHHH-hCcCCChhhHHHHHHHHHH--hCChhh--hhHHHHHHHHHHHHHHHHHhHHHHHhch----hHHHHHHHH-Hhcc
Confidence 4444 2233322334444444321 222211 11111 1112334333333333333344 569988877 9999
Q ss_pred CCCHHHHHHHHHHHHHHhhccccCCCCCCChhHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHh--------cCC-cccC
Q psy5930 1964 TPDIKVMKAIIKMTEEWLKVNKVEQNNVPNLKEKCIILVKLMHFVEKRFPDLNTMFLEIVLYVY--------MDE-NLKN 2034 (2426)
Q Consensus 1964 S~d~~ll~~Il~iv~~Wv~~~~~~~~~~PtlKEKa~lL~KM~~fe~r~~~~L~~~flelV~~Iy--------~d~-~~~~ 2034 (2426)
-.|++-+..+.++.+.-+.. || .++..++++|.+.-=| .|| ..++
T Consensus 135 EkDPRnLl~~F~l~~~i~~~-------~~-------------------~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~ 188 (262)
T PF14500_consen 135 EKDPRNLLLSFKLLKVILQE-------FD-------------------ISEFAEDLFDVFSCYFPITFRPPPNDPYGITR 188 (262)
T ss_pred CCCHHHHHHHHHHHHHHHHh-------cc-------------------cchhHHHHHHHhhheeeeeeeCCCCCCCCCCH
Confidence 99999999999988854431 22 1334455555554322 233 3566
Q ss_pred chhhhchhHHHh
Q psy5930 2035 SELVTKLEPAFL 2046 (2426)
Q Consensus 2035 tElt~rLE~aFL 2046 (2426)
.+|...|..||-
T Consensus 189 edLk~~L~~cl~ 200 (262)
T PF14500_consen 189 EDLKRALRNCLS 200 (262)
T ss_pred HHHHHHHHHHhc
Confidence 778887777764
No 41
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=56.96 E-value=15 Score=29.61 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=22.9
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Q psy5930 2375 LYALAYEQQGFYEQALKAYEVTIKK 2399 (2426)
Q Consensus 2375 ~~ALs~EQ~G~w~~AQ~~YE~a~~k 2399 (2426)
+.|.+|.+.|.|++|.+.|+....+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5789999999999999999998876
No 42
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=56.18 E-value=6.2e+02 Score=33.59 Aligned_cols=118 Identities=13% Similarity=0.133 Sum_probs=79.2
Q ss_pred HHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHhhCCchhh-cc----hhhHHHHHHHHHHhccCchhhhhHhHHHHHH
Q psy5930 726 VLIDAIAVILGHEDKELCKPGYIALKCIMETATCITGSIENA-CN----LPLMEYLAERMCNLCYERAWYAKLGGCYAIK 800 (2426)
Q Consensus 726 vl~DAi~~~l~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~-~~----~p~~~~L~~rf~~~Cy~~~w~~K~gG~~gi~ 800 (2426)
-+++-+++.|++ +++...+.+++..+.......+.....+ .+ =-+|.+++.++...=-+..=-.|..-..|+.
T Consensus 271 ~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs 348 (415)
T PF12460_consen 271 ELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALS 348 (415)
T ss_pred HHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHH
Confidence 388889999988 6667777777777665432222221111 11 1277788888866544333337778899999
Q ss_pred HHHHhchHHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHH
Q psy5930 801 FFYNTMAIKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLI 849 (2426)
Q Consensus 801 ~l~~~~~~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll 849 (2426)
.+++++|..-+..+..+++.=|+..| |+|.. .+...+-+++..++
T Consensus 349 ~ll~~vP~~vl~~~l~~LlPLLlqsL-~~~~~---~v~~s~L~tL~~~l 393 (415)
T PF12460_consen 349 HLLKNVPKSVLLPELPTLLPLLLQSL-SLPDA---DVLLSSLETLKMIL 393 (415)
T ss_pred HHHhhCCHHHHHHHHHHHHHHHHHHh-CCCCH---HHHHHHHHHHHHHH
Confidence 99999999999999999999999998 55544 24444555554444
No 43
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=53.08 E-value=19 Score=29.49 Aligned_cols=27 Identities=33% Similarity=0.346 Sum_probs=23.3
Q ss_pred hhHHHHHHHHhccHHHHHHHHHHHHHh
Q psy5930 2373 ETLYALAYEQQGFYEQALKAYEVTIKK 2399 (2426)
Q Consensus 2373 ET~~ALs~EQ~G~w~~AQ~~YE~a~~k 2399 (2426)
-++.|..|.+.|+|++|.+.|++|+.-
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 368899999999999999999999864
No 44
>KOG2956|consensus
Probab=53.01 E-value=1.8e+02 Score=38.49 Aligned_cols=159 Identities=11% Similarity=0.193 Sum_probs=88.0
Q ss_pred HHHHHHHhhcC-CChhhhhHHHHHHHHHHHH-HHHhhCCchhhcchhhHHHHHHHHHHhccCch-hhhhHhHHHHHHHHH
Q psy5930 727 LIDAIAVILGH-EDKELCKPGYIALKCIMET-ATCITGSIENACNLPLMEYLAERMCNLCYERA-WYAKLGGCYAIKFFY 803 (2426)
Q Consensus 727 l~DAi~~~l~~-~~~~~~~~~~~~l~~~~~~-~~~i~~~~~~~~~~p~~~~L~~rf~~~Cy~~~-w~~K~gG~~gi~~l~ 803 (2426)
+++.++++|++ ++....+-|.+.|..|+.. +..++.+.|.+ ..++.++--+.. =-...+.=-...++.
T Consensus 330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~a---------i~K~Leaa~ds~~~v~~~Aeed~~~~la 400 (516)
T KOG2956|consen 330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIA---------ICKVLEAAKDSQDEVMRVAEEDCLTTLA 400 (516)
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHH---------HHHHHHHHhCCchhHHHHHHHHHHHHHH
Confidence 78889999998 6777778888888888875 44445555543 122222221111 112222222334455
Q ss_pred HhchHHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhhhhhhhhHHHHHHHHhhhc
Q psy5930 804 NTMAIKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAETLTVQSKALSEVTNELTRNI 883 (2426)
Q Consensus 804 ~~~~~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~eL 883 (2426)
...|..=+.. |.+-++- .|-|.. .++.+++.+.+..++.+ .+. .-+.++.=.++..-
T Consensus 401 s~~P~~~I~~----i~~~Ilt------~D~~~~------~~~iKm~Tkl~e~l~~E------eL~-~ll~diaP~~iqay 457 (516)
T KOG2956|consen 401 SHLPLQCIVN----ISPLILT------ADEPRA------VAVIKMLTKLFERLSAE------ELL-NLLPDIAPCVIQAY 457 (516)
T ss_pred hhCchhHHHH----HhhHHhc------CcchHH------HHHHHHHHHHHhhcCHH------HHH-HhhhhhhhHHHHHh
Confidence 5555543322 1111111 222222 13344555555444433 111 12444444566777
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCchhhccccchhhh
Q psy5930 884 TLPNDLLREQSMYLLQVFAETQGKSVVQVMEPHKDVL 920 (2426)
Q Consensus 884 ~s~n~~VR~~aq~~L~~lae~t~~~v~ell~p~k~~L 920 (2426)
-|+.+.||++|.-||--+-.+.| .+=|+||-+.|
T Consensus 458 ~S~SS~VRKtaVfCLVamv~~vG---~~~mePhL~~L 491 (516)
T KOG2956|consen 458 DSTSSTVRKTAVFCLVAMVNRVG---MEEMEPHLEQL 491 (516)
T ss_pred cCchHHhhhhHHHhHHHHHHHHh---HHhhhhHhhhc
Confidence 89999999999999999988888 45577875543
No 45
>PTZ00429 beta-adaptin; Provisional
Probab=52.92 E-value=9.2e+02 Score=34.64 Aligned_cols=220 Identities=9% Similarity=0.103 Sum_probs=115.4
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhCCchhhccccchhhhhccCCCCccccccCchhhhHhhhhhhhhhcccCCCccccCcc
Q psy5930 883 ITLPNDLLREQSMYLLQVFAETQGKSVVQVMEPHKDVLADIIPPKKLLIRNHSANAQIGLMEGNTFCQSLTPRLFTTDMS 962 (2426)
Q Consensus 883 L~s~n~~VR~~aq~~L~~lae~t~~~v~ell~p~k~~Ll~~I~~Kpl~lRalpf~~QIG~idaitfcl~L~p~~l~~~~~ 962 (2426)
|.+.|+.|.-.|-.+|.-+.+..+. ..++..++-.+|+.-+.. ..=..|+-.++.++. ..|. +
T Consensus 188 L~D~dp~Vv~nAl~aL~eI~~~~~~-~l~l~~~~~~~Ll~~L~e-------~~EW~Qi~IL~lL~~---y~P~----~-- 250 (746)
T PTZ00429 188 LNDNNPVVASNAAAIVCEVNDYGSE-KIESSNEWVNRLVYHLPE-------CNEWGQLYILELLAA---QRPS----D-- 250 (746)
T ss_pred hcCCCccHHHHHHHHHHHHHHhCch-hhHHHHHHHHHHHHHhhc-------CChHHHHHHHHHHHh---cCCC----C--
Confidence 4567777777777777777654332 234444444444433321 124588888888854 2231 1
Q ss_pred hhhHHHHHHHHHHhhccCchhhhcCCCCCCccccchHHHHHHHHHHhhhcC--Cchhh----HHHHHHHHhhcCCCHHHH
Q psy5930 963 IHEHSSFFQEITNICESSDQALMKLPCYKPISSLVPLRKAAMRALASWHYV--PNCSQ----KIFNTLFAALERPNPELQ 1036 (2426)
Q Consensus 963 ~~el~rll~E~l~LadadD~~l~k~~~~k~~~~lv~LRv~ci~lL~~~~~~--~~~~~----rIi~vfFKsL~s~s~ei~ 1036 (2426)
.++...++.-++..- ++.+ . ....+|++++...... ++... |+..- .-+|.+.++|++
T Consensus 251 ~~e~~~il~~l~~~L-----------q~~N--~--AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~p-Lv~L~ss~~eiq 314 (746)
T PTZ00429 251 KESAETLLTRVLPRM-----------SHQN--P--AVVMGAIKVVANLASRCSQELIERCTVRVNTA-LLTLSRRDAETQ 314 (746)
T ss_pred cHHHHHHHHHHHHHh-----------cCCC--H--HHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHH-HHHhhCCCccHH
Confidence 133333333333221 1111 1 2344566654433221 23222 22222 235667888999
Q ss_pred HHHHHHHHHHHccCCCChhhHHHhhHHHHhhhcCCCCCCHhHHHHHHHhhhhCCCcccHHHHHHHHHHHHHhhhhhhhhh
Q psy5930 1037 EAAFQAMKTFVNGSPIDLKSVYEVMKPLLLTLGDYRNLNLVTARKLSYIVQPFPSSFSEKLCEQLLVNLKNLFENIVAQK 1116 (2426)
Q Consensus 1037 ~aA~~gLk~vL~~~~~~~e~L~q~LRPiL~nLsD~k~Ltv~gLegLarLLeLL~nyFkveiG~KLLdHLk~~~e~~~~~~ 1116 (2426)
=+|-..++.+++.. |+.+...++-..-...|+-.. -...|.-|+.|-+. =|+ +.+++-|+..+..
T Consensus 315 yvaLr~I~~i~~~~---P~lf~~~~~~Ff~~~~Dp~yI---K~~KLeIL~~Lane-~Nv---~~IL~EL~eYa~d----- 379 (746)
T PTZ00429 315 YIVCKNIHALLVIF---PNLLRTNLDSFYVRYSDPPFV---KLEKLRLLLKLVTP-SVA---PEILKELAEYASG----- 379 (746)
T ss_pred HHHHHHHHHHHHHC---HHHHHHHHHhhhcccCCcHHH---HHHHHHHHHHHcCc-ccH---HHHHHHHHHHhhc-----
Confidence 88888887777644 666666677777777787643 44555555544322 222 3355555544421
Q ss_pred cCCCCCCcchhHHHHHHHhhccCchhHHhhHHHHHHH
Q psy5930 1117 ENPPKNSETEKIIVVIIGIFKESPAAKAQFIEPLISL 1153 (2426)
Q Consensus 1117 ~~~~~~~~~~kii~aIinIFHLLP~aa~~Fle~Lv~~ 1153 (2426)
....=..+.+.+|=++=.-+|..+...++.|+.+
T Consensus 380 ---~D~ef~r~aIrAIg~lA~k~~~~a~~cV~~Ll~l 413 (746)
T PTZ00429 380 ---VDMVFVVEVVRAIASLAIKVDSVAPDCANLLLQI 413 (746)
T ss_pred ---CCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 1001123555666666666788777777777643
No 46
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=51.55 E-value=5e+02 Score=33.98 Aligned_cols=179 Identities=17% Similarity=0.255 Sum_probs=108.7
Q ss_pred cchhhHHHHHHHHHHHHhccCCCCCCCCCcccccccCCchhHHHHHHHHHHHHhcCCCCCCCCccccchhhHHHhhccCC
Q psy5930 1688 IEKVHADAVINFLARLSCQVSDLPPNLSSSMQSQVIQTPGEMLARRCVSLIRMALKPEVWSHQNTEFKLTWLDKVLSSID 1767 (2426)
Q Consensus 1688 i~~~~~d~vvnfLiR~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~r~l~LLk~~L~p~~W~~~~v~vkl~~feK~L~~~d 1767 (2426)
+.+..++.+..|+-||.-.++....-+-+ +-.....+.++.+.+-+++.+.. +|++ + ...
T Consensus 163 L~~~l~~ii~~y~~~Fl~~~~~~~~~~l~-~~~~~~~~~~~~l~~~il~~i~~----------------~fl~--~-~~~ 222 (373)
T PF14911_consen 163 LNQQLRNIIQQYLPRFLPASPSKLVARLS-TLLSAFTPRNEELRKFILQVIRS----------------NFLE--F-KGS 222 (373)
T ss_pred HHHHHHHHHHHHHhHhccCCCcccccccc-ccccchhhhhhHHHHHHHHHHHH----------------HHhc--C-CCC
Confidence 55677899999999998665442111100 11112222333355555544332 2222 0 011
Q ss_pred CCCccHHHHHHHHHHHHHHHhc---CChhHHHHhhHHHHHHHHHHHh-cC-chhHHHHHHHHHHHHHhcCCCCCCCCCcc
Q psy5930 1768 QPTANLGNISIALELLTLLITI---LDEGQILHIIKPLQRGLVACIS-SS-ITKVIRLVHALLCRLMSTFPTEPISSNVA 1842 (2426)
Q Consensus 1768 ~~~~n~~~~~naLevL~il~~~---~~~~~il~nl~~lq~lL~kcl~-~~-n~~i~~~l~~ll~rll~~~p~~~~~~~~~ 1842 (2426)
.+.++ ...+|-.+..++.. .+..+++.-++.+-..+-+|+- ++ .+.+.+....++..+++.-.. +
T Consensus 223 ~p~p~---l~~vL~fl~~Ll~~~~~~~~~~~~~~~~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~~-------~ 292 (373)
T PF14911_consen 223 APPPR---LASVLAFLQQLLKRLQRQNENQILTLLRLVLPSLLECLMLVNEEPQVKKLATELLQYMVESCQV-------G 292 (373)
T ss_pred CCCCc---HHHHHHHHHHHHHhcCcccchhHHHHHHHhhHHHHHHHhhcCCCcchhHHHHHHHHHHHHcccc-------c
Confidence 12222 33444455555555 5677788888888877777876 33 456666666777777765331 2
Q ss_pred CchhhHHHHHHHHHHHHHhhhccccCCCCCCcchHHHHHHHHHHHhhhCchhhhHhhHHHHHHH
Q psy5930 1843 SKREELDHLYVCVSKVIYEGLSNYEKNPTATCSTLYGTVMMLKAACMNHPAYVDRFILEFMRVI 1906 (2426)
Q Consensus 1843 ~~~~e~~~f~~~l~~~i~e~L~~~~~~~~~~~~~~~~~l~lL~~~~~~~p~~iD~~l~~lmk~l 1906 (2426)
.+...-+.+.+.+.+++.+.++-|+. ..+.++.+++.-+|+.|-+++|.+-..+
T Consensus 293 ~~~~~~~~l~s~lrsfvqk~l~~~t~----------~~f~~l~~vA~l~p~lV~~Lip~i~q~l 346 (373)
T PF14911_consen 293 SSGEPREQLTSVLRSFVQKYLAHYTY----------QYFQFLEKVAELDPQLVISLIPTIRQSL 346 (373)
T ss_pred CcchHHHHHHHHHHHHHHHHhhhhhH----------HHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 33345568899999999999987532 3578899999999999999998655444
No 47
>KOG2259|consensus
Probab=50.40 E-value=8.9e+02 Score=33.72 Aligned_cols=312 Identities=14% Similarity=0.095 Sum_probs=153.1
Q ss_pred HHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHhhCCchhhcchhhHHHHHHHHHHhccCchhhhhHhHHHHHHHHHH
Q psy5930 725 LVLIDAIAVILGHEDKELCKPGYIALKCIMETATCITGSIENACNLPLMEYLAERMCNLCYERAWYAKLGGCYAIKFFYN 804 (2426)
Q Consensus 725 ~vl~DAi~~~l~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~p~~~~L~~rf~~~Cy~~~w~~K~gG~~gi~~l~~ 804 (2426)
.+...-.++.|+++..++|++|..++-..-+..- ........+.-.....++++|+.--+.+|.-+.-..-.++-| +
T Consensus 233 ~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p--~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~-~ 309 (823)
T KOG2259|consen 233 KACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCP--APLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEF-E 309 (823)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCC--CcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchH-H
Confidence 4466667788888889999888887765544321 122222334556778889999999999997665444433322 1
Q ss_pred hchHHHHHHHHHHHHHHHHHHh--cCCCcccchhHHHHHHHHHHHHHHHHcC-CCCCCCchhhhhhh--hhhHHHHHHHH
Q psy5930 805 TMAIKWVYSHMFVFVKALLFVM--MDLTGEVSSGAIDEARRNLKQLIVLCAT-PIKEPVDAETLTVQ--SKALSEVTNEL 879 (2426)
Q Consensus 805 ~~~~~wl~~~~~~ivraLlfvl--kD~p~e~~~~~~~~a~~~l~~ll~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~l 879 (2426)
..+...+.+- +=+-++-=+ |-+..+ .++. ++.--...-. ....+...|..+.+ +-.-...||.+
T Consensus 310 ~vSee~i~QT---LdKKlms~lRRkr~ahk-------rpk~-l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~ 378 (823)
T KOG2259|consen 310 QVSEEIIQQT---LDKKLMSRLRRKRTAHK-------RPKA-LYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGAL 378 (823)
T ss_pred HhHHHHHHHH---HHHHHhhhhhhhhhccc-------chHH-HHhcCCcccCccccccCchhhcccccccccccccccee
Confidence 1222222110 000000000 000000 0000 0000000000 00000111111111 11133457788
Q ss_pred hhhcCCCChHHHHHHHHHHHHHHHHhCCchhhccccchhhhhccCCCCccccccCchhhhHhhhhhhhhhcccCCCcccc
Q psy5930 880 TRNITLPNDLLREQSMYLLQVFAETQGKSVVQVMEPHKDVLADIIPPKKLLIRNHSANAQIGLMEGNTFCQSLTPRLFTT 959 (2426)
Q Consensus 880 v~eL~s~n~~VR~~aq~~L~~lae~t~~~v~ell~p~k~~Ll~~I~~Kpl~lRalpf~~QIG~idaitfcl~L~p~~l~~ 959 (2426)
|+.|-.----||++|..++..||-. +|-|+- |+ +.|.+. -|
T Consensus 379 VhGlEDEf~EVR~AAV~Sl~~La~s-----------------sP~FA~----~a------------ldfLvD------Mf 419 (823)
T KOG2259|consen 379 VHGLEDEFYEVRRAAVASLCSLATS-----------------SPGFAV----RA------------LDFLVD------MF 419 (823)
T ss_pred eeechHHHHHHHHHHHHHHHHHHcC-----------------CCCcHH----HH------------HHHHHH------Hh
Confidence 8877776778999999999998841 122221 22 222222 15
Q ss_pred CcchhhHHHHHHHHHHhhccCchhhhcCCCCCCccccchHHHHHHHHHHhhhcCCchhhHHHHHHHHhhcCCCHHHHHHH
Q psy5930 960 DMSIHEHSSFFQEITNICESSDQALMKLPCYKPISSLVPLRKAAMRALASWHYVPNCSQKIFNTLFAALERPNPELQEAA 1039 (2426)
Q Consensus 960 ~~~~~el~rll~E~l~LadadD~~l~k~~~~k~~~~lv~LRv~ci~lL~~~~~~~~~~~rIi~vfFKsL~s~s~ei~~aA 1039 (2426)
| ||... .|--||..|-.--.+-..++..+.++-++|.-.|++|.+++
T Consensus 420 N---DE~~~------------------------------VRL~ai~aL~~Is~~l~i~eeql~~il~~L~D~s~dvRe~l 466 (823)
T KOG2259|consen 420 N---DEIEV------------------------------VRLKAIFALTMISVHLAIREEQLRQILESLEDRSVDVREAL 466 (823)
T ss_pred c---cHHHH------------------------------HHHHHHHHHHHHHHHheecHHHHHHHHHHHHhcCHHHHHHH
Confidence 5 33211 23333443332222233455678888899999999988887
Q ss_pred HHHHHHHHccCCCC-hhhHHHhhHHHHhhhcCCCCCCHhHHHHHHHhhhhCCCcccHHHHHHHHHHHHHhhhh--hhhhh
Q psy5930 1040 FQAMKTFVNGSPID-LKSVYEVMKPLLLTLGDYRNLNLVTARKLSYIVQPFPSSFSEKLCEQLLVNLKNLFEN--IVAQK 1116 (2426)
Q Consensus 1040 ~~gLk~vL~~~~~~-~e~L~q~LRPiL~nLsD~k~Ltv~gLegLarLLeLL~nyFkveiG~KLLdHLk~~~e~--~~~~~ 1116 (2426)
++-|+.. +.+ .+-+.-++.-+|-||+-+-+=--..+.-+++.=+=- |..++.-++.+.+. ...+.
T Consensus 467 ~elL~~~----~~~d~~~i~m~v~~lL~~L~kyPqDrd~i~~cm~~iGqnH--------~~lv~s~m~rfl~kh~~f~t~ 534 (823)
T KOG2259|consen 467 RELLKNA----RVSDLECIDMCVAHLLKNLGKYPQDRDEILRCMGRIGQNH--------RRLVLSNMGRFLEKHTSFATI 534 (823)
T ss_pred HHHHHhc----CCCcHHHHHHHHHHHHHHhhhCCCCcHHHHHHHHHHhccC--------hhhHHHHHHHHHHhccccccc
Confidence 7776643 333 455666677778887766444444555555433322 23344555555543 12222
Q ss_pred cCCCCCCcchhHHHHHHH
Q psy5930 1117 ENPPKNSETEKIIVVIIG 1134 (2426)
Q Consensus 1117 ~~~~~~~~~~kii~aIin 1134 (2426)
...++++.-+-...-++|
T Consensus 535 e~s~ed~~y~akLilv~n 552 (823)
T KOG2259|consen 535 EPSLEDGFYIAKLILVRN 552 (823)
T ss_pred CccccChhhhhhhhhhhh
Confidence 344555444433333333
No 48
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=48.52 E-value=6.7 Score=47.53 Aligned_cols=25 Identities=52% Similarity=0.881 Sum_probs=20.1
Q ss_pred HHhcCCchhHHhhhhhhh----hhhccCCcc
Q psy5930 484 SALNGSSTLISQGLRTLE----LCVDNLQPD 510 (2426)
Q Consensus 484 ~AL~~~~eLvsqGLRTLE----lcVDNLtpd 510 (2426)
..+.|+. -|.|||+|| +|||||+|+
T Consensus 7 TGlSGAG--KsvAl~~lEDlGyycvDNLPp~ 35 (286)
T COG1660 7 TGLSGAG--KSVALRVLEDLGYYCVDNLPPQ 35 (286)
T ss_pred ecCCCCc--HHHHHHHHHhcCeeeecCCCHH
Confidence 3455544 688999999 999999998
No 49
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=48.12 E-value=28 Score=28.56 Aligned_cols=28 Identities=21% Similarity=0.191 Sum_probs=22.6
Q ss_pred HHHhhhcCCCChHHHHHHHHHHHHHHHH
Q psy5930 877 NELTRNITLPNDLLREQSMYLLQVFAET 904 (2426)
Q Consensus 877 ~~lv~eL~s~n~~VR~~aq~~L~~lae~ 904 (2426)
-.+..-+.+|+..||++|-.||..+++.
T Consensus 3 p~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 3 PILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 3456677899999999999999999873
No 50
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=48.11 E-value=8.6e+02 Score=32.86 Aligned_cols=253 Identities=19% Similarity=0.195 Sum_probs=156.1
Q ss_pred hhhhHHHHHHHHHHHHhhccCcchhhHhhHHhhhhcC-cchHHHHHHHHHhhcCCCCCCC-----CCchhhHHHHHHHHH
Q psy5930 1501 PATRYHGHLLLAHMIAKFGVSQRVVVQVFLGLLRAHA-SEVRPIVRQALEILTPAFPGRV-----DDGQRMLLVYTKKIL 1574 (2426)
Q Consensus 1501 ~~~K~~Ayvlia~fI~~f~~P~KIVlQVfvaLLra~q-~E~R~LVrqALDIL~P~Lp~R~-----~~~~~~w~~~tkkiL 1574 (2426)
+-.|++|+-++...|+.-+.-.-+.-..|...++.+. +|-=++-=+||..||- .+|. .+-.+.+.+|...+.
T Consensus 43 ~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~~d~~~~l~aL~~LT~--~Grdi~~~~~~i~~~L~~wl~~~~ 120 (464)
T PF11864_consen 43 SEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSNDDDFDLRLEALIALTD--NGRDIDFFEYEIGPFLLSWLEPSY 120 (464)
T ss_pred HHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHc--CCcCchhcccchHHHHHHHHHHHH
Confidence 3478899988888888777644455566666665553 3345677788888872 2331 122244677877766
Q ss_pred ------------------------hccCCChhhHHHHHHHHhcCCccchhhhhhhHHHHHHHHhhhCCCCCcchhhHHHH
Q psy5930 1575 ------------------------VEEGHSNPQLSHVLTLIVKHYKVYYPVRHGLIQQMIASMQRLGFSSSAMDHKKLSV 1630 (2426)
Q Consensus 1575 ------------------------~EEgh~~~Ql~hI~qlIVRH~dlFY~~R~~fvp~mInsl~kLg~~~n~~E~r~LAi 1630 (2426)
-.|..++.+++++..=+|++- |...-+..+..||+.+-.+....+..+-=+-++
T Consensus 121 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn--~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L 198 (464)
T PF11864_consen 121 QAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFN--FNYLDEDEISSLVDQICTICKSTSSEDDIEACL 198 (464)
T ss_pred HHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 124445666655555555554 334456788888888888854444444447889
Q ss_pred HHHHHHHHhhhhhhhhhhccCCCCCCCCCCcccccccccCCCCCCCCccCCCCCCCCcchhhHHHHHHHHHHHHhccCCC
Q psy5930 1631 ELADVIIKWELQRVKEEAEGTSGGKAIQEPPRKKMALESFAPGESSMKYDIPTASKPIEKVHADAVINFLARLSCQVSDL 1710 (2426)
Q Consensus 1631 DL~elIi~WE~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~vvnfLiR~~~~~~~~ 1710 (2426)
++.+.|+.-- -+|..-...+|.+|-|..+..
T Consensus 199 ~vldaii~y~----------------------------------------------~iP~~sl~~~i~vLCsi~~~~--- 229 (464)
T PF11864_consen 199 SVLDAIITYG----------------------------------------------DIPSESLSPCIEVLCSIVNSV--- 229 (464)
T ss_pred HHHHHHHHcC----------------------------------------------cCChHHHHHHHHHHhhHhccc---
Confidence 9999998841 033344567888888876543
Q ss_pred CCCCCCcccccccCCchhHHHHHHHHHHHHhcCCCCCCCCccccchhhHHHhhccCCCC-CccHHHHHHHHHHHHHHHhc
Q psy5930 1711 PPNLSSSMQSQVIQTPGEMLARRCVSLIRMALKPEVWSHQNTEFKLTWLDKVLSSIDQP-TANLGNISIALELLTLLITI 1789 (2426)
Q Consensus 1711 ~~~~~~~~~~~~~~~~~~~L~~r~l~LLk~~L~p~~W~~~~v~vkl~~feK~L~~~d~~-~~n~~~~~naLevL~il~~~ 1789 (2426)
.+++.+...++++++...+. ..| .-+=.+|...+.. ..+...+--|+.+++-++-.
T Consensus 230 ------------------~l~~~~w~~m~nL~~S~~g~---~~i--~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~ 286 (464)
T PF11864_consen 230 ------------------SLCKPSWRTMRNLLKSHLGH---SAI--RTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWG 286 (464)
T ss_pred ------------------ccchhHHHHHHHHHcCccHH---HHH--HHHHHHHcccCccccccHHHHhhHHHHHHHHHhc
Confidence 18888999999999866653 222 3334445333332 33455566889999887766
Q ss_pred CChhHHHH-hhHH--HHHHHHHHHhcCchhHHHHHHHHHHHHH
Q psy5930 1790 LDEGQILH-IIKP--LQRGLVACISSSITKVIRLVHALLCRLM 1829 (2426)
Q Consensus 1790 ~~~~~il~-nl~~--lq~lL~kcl~~~n~~i~~~l~~ll~rll 1829 (2426)
...+.+.+ .+.+ +-..+.++++++++.|.--+-..+.+++
T Consensus 287 ~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 287 SGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred cccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 54333322 3444 7778888888887654433333334444
No 51
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=47.67 E-value=24 Score=29.89 Aligned_cols=27 Identities=37% Similarity=0.447 Sum_probs=23.3
Q ss_pred hHHHHHHHHhccHHHHHHHHHHHHHhh
Q psy5930 2374 TLYALAYEQQGFYEQALKAYEVTIKKG 2400 (2426)
Q Consensus 2374 T~~ALs~EQ~G~w~~AQ~~YE~a~~k~ 2400 (2426)
.+.|..|...|.|++|.++|++++.-.
T Consensus 6 ~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 6 NNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 578999999999999999999998763
No 52
>KOG1240|consensus
Probab=46.16 E-value=9.4e+02 Score=35.78 Aligned_cols=207 Identities=14% Similarity=0.118 Sum_probs=102.0
Q ss_pred HHHHhcchhHHHhHHHHHHHHHHHHHHHHHHhhc--CCCCCCcccc--cccCCCCh-HHHHHHHHHhhcCCCh-hhhhHH
Q psy5930 673 IFMVYLIKELRKDSLLYTVLVVRHYTLVAITQQT--GPFPLYGKSA--LLEGTMDP-LVLIDAIAVILGHEDK-ELCKPG 746 (2426)
Q Consensus 673 ~f~a~~~~~l~~~a~~f~~~v~rhf~l~~i~~~~--~~~~~~~~~~--~~~~~ld~-~vl~DAi~~~l~~~~~-~~~~~~ 746 (2426)
+-+|..+..|...|..|+...-+ .++. ...+.+.... .....+.- +..+...+.+|-.+.+ -++.+-
T Consensus 526 iayAsnla~LA~tA~rFle~~q~-------~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~L 598 (1431)
T KOG1240|consen 526 IAYASNLAQLAKTAYRFLELTQE-------LRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRAL 598 (1431)
T ss_pred hhHHhhHHHHHHHHHHHHHHHHH-------HHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 56899999999999999875311 1111 1111110000 11111111 1233444444444444 444433
Q ss_pred HHHHHHHHHHHHHhhCCchhhcchhhHHHHHHHHHHhccCchhhhhHhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHh
Q psy5930 747 YIALKCIMETATCITGSIENACNLPLMEYLAERMCNLCYERAWYAKLGGCYAIKFFYNTMAIKWVYSHMFVFVKALLFVM 826 (2426)
Q Consensus 747 ~~~l~~~~~~~~~i~~~~~~~~~~p~~~~L~~rf~~~Cy~~~w~~K~gG~~gi~~l~~~~~~~wl~~~~~~ivraLlfvl 826 (2426)
.+. |...+. .||. +++..+ |++-+|..--+..|.=+.+=.-.|--+.-.++..=+-+. ++.=|.-.|
T Consensus 599 le~---i~~LC~-FFGk-~ksND~-----iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~sey---llPLl~Q~l 665 (1431)
T KOG1240|consen 599 LES---IIPLCV-FFGK-EKSNDV-----ILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEY---LLPLLQQGL 665 (1431)
T ss_pred HHH---HHHHHH-Hhhh-cccccc-----hHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHH---HHHHHHHhc
Confidence 333 444442 2343 333332 555666666677777665422222111000111101111 122223334
Q ss_pred cCCCcccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhhhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHh-
Q psy5930 827 MDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAETLTVQSKALSEVTNELTRNITLPNDLLREQSMYLLQVFAETQ- 905 (2426)
Q Consensus 827 kD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~eL~s~n~~VR~~aq~~L~~lae~t- 905 (2426)
-|-.+ .++..|-.++..|++.- -..+..+..+++....-|.+||..||.++-.-+..+++..
T Consensus 666 tD~EE----~Viv~aL~~ls~Lik~~-------------ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls 728 (1431)
T KOG1240|consen 666 TDGEE----AVIVSALGSLSILIKLG-------------LLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLS 728 (1431)
T ss_pred cCcch----hhHHHHHHHHHHHHHhc-------------ccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhh
Confidence 34332 23444555554444331 1234457778888889999999999999988888888554
Q ss_pred CCchhhccccc
Q psy5930 906 GKSVVQVMEPH 916 (2426)
Q Consensus 906 ~~~v~ell~p~ 916 (2426)
..+|.-.+.|.
T Consensus 729 ~advyc~l~P~ 739 (1431)
T KOG1240|consen 729 AADVYCKLMPL 739 (1431)
T ss_pred hhhheEEeehh
Confidence 45676666663
No 53
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=44.96 E-value=1.4e+02 Score=29.19 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=31.7
Q ss_pred HHhcCccHHHHHHHhhhcCchhhHHHHHHHHhccHHHHHHHHHHHHHh
Q psy5930 2352 YSALREEDMWFGLWQKNAKHKETLYALAYEQQGFYEQALKAYEVTIKK 2399 (2426)
Q Consensus 2352 Y~~L~E~D~~~GlWrrra~~~ET~~ALs~EQ~G~w~~AQ~~YE~a~~k 2399 (2426)
++.++++....+..- -+.|..|...|.+++|.+.|++|..=
T Consensus 35 ~~~~~~~~~~~a~~~-------~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 35 EEQLGDDHPDTANTL-------NNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHTTTHHHHHHHHH-------HHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 566666655555443 57799999999999999999998753
No 54
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=44.90 E-value=7.7e+02 Score=33.11 Aligned_cols=290 Identities=15% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhhhhhhhhHHHHHHHHhhhcCCCChH-HHHHHHH
Q psy5930 818 FVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAETLTVQSKALSEVTNELTRNITLPNDL-LREQSMY 896 (2426)
Q Consensus 818 ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~eL~s~n~~-VR~~aq~ 896 (2426)
+.||+|.|+-=..+++...+....+.+...+-..|-++.++. ....+-+.++.+++-.++.++. |.+.-..
T Consensus 46 lMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~--------FnHylFEsi~~lir~~~~~~~~~v~~~E~~ 117 (435)
T PF03378_consen 46 LMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPR--------FNHYLFESIGALIRFVCEADPEAVSQFEEA 117 (435)
T ss_dssp HHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HH--------HHHHHHHHHHHHHHHS-GGGHH---HHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc--------hhhhHHHHHHHHHHhccCCChhHHHHHHHH
Q ss_pred HHHHHHHHhCCchhhccccchhhhhccCCCCccccccCchhhhHhhhhhhhhhcccCCCccccCcchhhHHHHHHHHHHh
Q psy5930 897 LLQVFAETQGKSVVQVMEPHKDVLADIIPPKKLLIRNHSANAQIGLMEGNTFCQSLTPRLFTTDMSIHEHSSFFQEITNI 976 (2426)
Q Consensus 897 ~L~~lae~t~~~v~ell~p~k~~Ll~~I~~Kpl~lRalpf~~QIG~idaitfcl~L~p~~l~~~~~~~el~rll~E~l~L 976 (2426)
++..+....+..|.|.+ |.--|| +.+++...| -=+.. +.+..++.-+++-
T Consensus 118 L~P~f~~ILq~dV~EF~---------------------PYvfQI-----la~Lle~~~-~~~~p---~~y~~L~~~Ll~p 167 (435)
T PF03378_consen 118 LFPPFQEILQQDVQEFI---------------------PYVFQI-----LAQLLELRP-SSPLP---DAYKQLFPPLLSP 167 (435)
T ss_dssp HHHHHHHHHHTT-TTTH---------------------HHHHHH-----HHHHHHHSS---S-----TTTGGGHHHHTSG
T ss_pred HHHHHHHHHHHHHHHHH---------------------HHHHHH-----HHHHHHcCC-CCCCc---HHHHHHHHHHcCc
Q ss_pred hccCchhhhcCCCCCCccccchHHHHHHHHHHhhhcCCchhhHHHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCChhh
Q psy5930 977 CESSDQALMKLPCYKPISSLVPLRKAAMRALASWHYVPNCSQKIFNTLFAALERPNPELQEAAFQAMKTFVNGSPIDLKS 1056 (2426)
Q Consensus 977 adadD~~l~k~~~~k~~~~lv~LRv~ci~lL~~~~~~~~~~~rIi~vfFKsL~s~s~ei~~aA~~gLk~vL~~~~~~~e~ 1056 (2426)
.-=|-.+ ++..+++|-.+-|+-=...+...+.-+.|++||=|.+.+++-|.. |++=|..++.+ +|++.
T Consensus 168 ~lWe~~g--------niPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D~~--gF~LL~~iv~~--~p~~~ 235 (435)
T PF03378_consen 168 ALWERRG--------NIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKANDHY--GFDLLESIVEN--LPPEA 235 (435)
T ss_dssp GGGGSTT--------THHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCHHH--HHHHHHHHHHH--S-HHH
T ss_pred chhccCC--------CcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcchH--HHHHHHHHHHH--CCHHH
Q ss_pred HHHhhHHHHhhhcC--CCCCCHhHHHHHHHhhhhCCCcccHHHHHHHHH-----HHHHhhhhhhhhhcCCCCCCcchhHH
Q psy5930 1057 VYEVMKPLLLTLGD--YRNLNLVTARKLSYIVQPFPSSFSEKLCEQLLV-----NLKNLFENIVAQKENPPKNSETEKII 1129 (2426)
Q Consensus 1057 L~q~LRPiL~nLsD--~k~Ltv~gLegLarLLeLL~nyFkveiG~KLLd-----HLk~~~e~~~~~~~~~~~~~~~~kii 1129 (2426)
+.+-|++|+.-|=. .+.=|.-..+++.+.+-++..+++..-=-..+| -+..+.+...+...+.+....+-|+|
T Consensus 236 l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~ 315 (435)
T PF03378_consen 236 LEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKIC 315 (435)
T ss_dssp HGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHH
Q ss_pred HH-HHHhhccCchhHHh---hHHHHHHHHHHH
Q psy5930 1130 VV-IIGIFKESPAAKAQ---FIEPLISLILEN 1157 (2426)
Q Consensus 1130 ~a-IinIFHLLP~aa~~---Fle~Lv~~Vl~l 1157 (2426)
+. +.++..--|.-.+. ..-.++..++++
T Consensus 316 ~vGltkLL~es~~~~~~~~~~w~~ll~~Ll~l 347 (435)
T PF03378_consen 316 AVGLTKLLCESPAFLSEYSQLWPPLLEALLKL 347 (435)
T ss_dssp HHHHHHHHHSSTTHHHH-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHhhhhHHHHHHHHHHHHHHHH
No 55
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=43.47 E-value=9.4e+02 Score=31.98 Aligned_cols=107 Identities=18% Similarity=0.185 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHhhHHHHHHHHHHHhcCchhHHHHHHHHH--HHHHhcCCCCCCCCCccCchhhHHHHHHH
Q psy5930 1777 SIALELLTLLITILDEGQILHIIKPLQRGLVACISSSITKVIRLVHALL--CRLMSTFPTEPISSNVASKREELDHLYVC 1854 (2426)
Q Consensus 1777 ~naLevL~il~~~~~~~~il~nl~~lq~lL~kcl~~~n~~i~~~l~~ll--~rll~~~p~~~~~~~~~~~~~e~~~f~~~ 1854 (2426)
..-|.-+..++...+++.+...+.++-+.+.+|++|.|..|-+..-.+. ..++..+. +-....+..
T Consensus 273 v~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~------------~~~~~i~p~ 340 (409)
T PF01603_consen 273 VLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLIS------------QNSRVILPI 340 (409)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHH------------CTHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHH------------hChHHHHHH
Confidence 3346667777888889999999999999999999999998876543332 11222211 011223333
Q ss_pred HHHHHHhhhccccCCCCCCcchHHHHHHHHHHHhhhCchhhhHhhH
Q psy5930 1855 VSKVIYEGLSNYEKNPTATCSTLYGTVMMLKAACMNHPAYVDRFIL 1900 (2426)
Q Consensus 1855 l~~~i~e~L~~~~~~~~~~~~~~~~~l~lL~~~~~~~p~~iD~~l~ 1900 (2426)
+...+.+...+.= + .+.-..+.+.++.+...+|+.-|....
T Consensus 341 i~~~L~~~~~~HW---n--~~Vr~~a~~vl~~l~~~d~~lf~~~~~ 381 (409)
T PF01603_consen 341 IFPALYRNSKNHW---N--QTVRNLAQNVLKILMEMDPKLFDKCAQ 381 (409)
T ss_dssp HHHHHSSTTSS-S---S--TTHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---h--HHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 3333333222211 1 122224678899999999987777543
No 56
>KOG1943|consensus
Probab=41.16 E-value=3.1e+02 Score=39.72 Aligned_cols=160 Identities=14% Similarity=0.157 Sum_probs=85.8
Q ss_pred CCChHHHHHH----HHHhhcCCChhhhhHHHHHHHHHHHHHHHhhCCchhhcchhhHHHHHHHHHHhccCchhhhhHhHH
Q psy5930 721 TMDPLVLIDA----IAVILGHEDKELCKPGYIALKCIMETATCITGSIENACNLPLMEYLAERMCNLCYERAWYAKLGGC 796 (2426)
Q Consensus 721 ~ld~~vl~DA----i~~~l~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~p~~~~L~~rf~~~Cy~~~w~~K~gG~ 796 (2426)
.+++..++++ |...+++.+ .+++++..++..++.+-.. ++...+. |+......+..++-++.. .
T Consensus 668 ~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~--~d~~~~~--~li~~~ls~~~~~~~~~~-------r 735 (1133)
T KOG1943|consen 668 RLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVK--ADEGEEA--PLITRYLSRLTKCSEERI-------R 735 (1133)
T ss_pred hhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHh--cCchhhh--HHHHHHHHHhcCchHHHH-------H
Confidence 3444444443 344555555 7889999999988887654 3333222 565555555555444432 3
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhhhhhhhhHHHHH
Q psy5930 797 YAIKFFYNTMAIKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAETLTVQSKALSEVT 876 (2426)
Q Consensus 797 ~gi~~l~~~~~~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 876 (2426)
.|+..-.+.+|..-+.-|..+.+-.+++ --.|.+..+.++...-..+.++.+....- +.++.++...
T Consensus 736 ~g~~lal~~lp~~~i~~~~q~~lc~~~l--~~~p~d~~a~aR~~~V~al~~v~~~~~~~-----------~~~~~~~k~~ 802 (1133)
T KOG1943|consen 736 RGLILALGVLPSELIHRHLQEKLCKLVL--ELLPSDAWAEARQQNVKALAHVCKTVTSL-----------LFSESIEKFR 802 (1133)
T ss_pred HHHHHHHccCcHHhhchHHHHHHHHHHh--ccCcccccHHHHHHHHHHHHHHHHHHHHh-----------hccccHHHHH
Confidence 4555556777777776664555544433 23566665555544444444444333211 1112233333
Q ss_pred HHHhhhc----CCCC----hHHHHHHHHHHHHHHHHh
Q psy5930 877 NELTRNI----TLPN----DLLREQSMYLLQVFAETQ 905 (2426)
Q Consensus 877 ~~lv~eL----~s~n----~~VR~~aq~~L~~lae~t 905 (2426)
..|..-+ ++.+ +.||++|++++..+-...
T Consensus 803 e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l 839 (1133)
T KOG1943|consen 803 ETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTL 839 (1133)
T ss_pred HHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhh
Confidence 3333322 2222 379999999998776443
No 57
>KOG1967|consensus
Probab=40.88 E-value=1.1e+02 Score=43.20 Aligned_cols=124 Identities=15% Similarity=0.136 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHhhHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhcCCCCCCCCCccCchhhHHHHHHH
Q psy5930 1775 NISIALELLTLLITILDEGQILHIIKPLQRGLVACISSSITKVIRLVHALLCRLMSTFPTEPISSNVASKREELDHLYVC 1854 (2426)
Q Consensus 1775 ~~~naLevL~il~~~~~~~~il~nl~~lq~lL~kcl~~~n~~i~~~l~~ll~rll~~~p~~~~~~~~~~~~~e~~~f~~~ 1854 (2426)
.-+|-++.|..++++.|.+.++.+++.|+.+|-.|+.+....++-+--..+..++..-++ =..+.+++|+.+
T Consensus 883 ~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~t--------L~t~~~~Tlvp~ 954 (1030)
T KOG1967|consen 883 QKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESET--------LQTEHLSTLVPY 954 (1030)
T ss_pred chhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccc--------cchHHHhHHHHH
Confidence 356778999999999999999999999999999999999998866555555555543321 112234444444
Q ss_pred HHHHHHhhhccccCCCCC-CcchHHHHHHHHHHHhhhCch-----hhhHhhHHHHHHHH---HHHHHhh
Q psy5930 1855 VSKVIYEGLSNYEKNPTA-TCSTLYGTVMMLKAACMNHPA-----YVDRFILEFMRVIQ---RMAREHI 1914 (2426)
Q Consensus 1855 l~~~i~e~L~~~~~~~~~-~~~~~~~~l~lL~~~~~~~p~-----~iD~~l~~lmk~l~---kl~keHl 1914 (2426)
+-. .++.+.. +++.-..+|.+|.++....|. |.|..+.++.|.|. |+.|...
T Consensus 955 lLs--------ls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eA 1015 (1030)
T KOG1967|consen 955 LLS--------LSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEA 1015 (1030)
T ss_pred HHh--------cCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHH
Confidence 332 1221111 234444678999999986664 55666666666664 4555544
No 58
>PRK09687 putative lyase; Provisional
Probab=40.44 E-value=1.6e+02 Score=37.05 Aligned_cols=29 Identities=10% Similarity=0.170 Sum_probs=23.0
Q ss_pred HHHHHHhhhcCCCChHHHHHHHHHHHHHH
Q psy5930 874 EVTNELTRNITLPNDLLREQSMYLLQVFA 902 (2426)
Q Consensus 874 ~~~~~lv~eL~s~n~~VR~~aq~~L~~la 902 (2426)
.++..|+.-|.++|..||..|..+|..+.
T Consensus 192 ~~~~~L~~~L~D~~~~VR~~A~~aLg~~~ 220 (280)
T PRK09687 192 DIREAFVAMLQDKNEEIRIEAIIGLALRK 220 (280)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHccC
Confidence 34566777889999999999999886544
No 59
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=39.88 E-value=4.1e+02 Score=35.19 Aligned_cols=91 Identities=26% Similarity=0.478 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHhhhcCccchhhhHHhhhhhccccccccccCCcchhhHHHHHHhcC-CchhHHhhhhhhhhhhccCC
Q psy5930 430 FLPLLRNLLQGLNSLQSGLHKQQMKDLFVELCLTVPVRLSSLLPYLPMLMDPLVSALNG-SSTLISQGLRTLELCVDNLQ 508 (2426)
Q Consensus 430 ilPLLp~lLe~Ln~Ll~~~~~~~~RdL~VELCLTVPvRLS~LLPyL~~LM~PLV~AL~~-~~eLvsqGLRTLElcVDNLt 508 (2426)
|--++|.+++....--.. .++..---+.=+.=.|| -++++|+++-|++-|+-||.. ++++..-+|.||.-.++.-
T Consensus 321 F~~~~p~L~~~~~~~~~~-~k~~yL~ALs~ll~~vP--~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~- 396 (415)
T PF12460_consen 321 FTQVLPKLLEGFKEADDE-IKSNYLTALSHLLKNVP--KSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA- 396 (415)
T ss_pred HHHHHHHHHHHHhhcChh-hHHHHHHHHHHHHhhCC--HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC-
Confidence 444566666665432211 22222233344555788 568999999999999999976 5579999999999999887
Q ss_pred cchhhhccchHHHHHH
Q psy5930 509 PDFLYDHIQPVRADLM 524 (2426)
Q Consensus 509 pdfLdp~~~pV~~elm 524 (2426)
|+.+.+|+.-++.-|+
T Consensus 397 ~~~i~~hl~sLI~~LL 412 (415)
T PF12460_consen 397 PELISEHLSSLIPRLL 412 (415)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777766666555
No 60
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=38.63 E-value=42 Score=27.16 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=22.1
Q ss_pred hHHHHHHHHhccHHHHHHHHHHHHHh
Q psy5930 2374 TLYALAYEQQGFYEQALKAYEVTIKK 2399 (2426)
Q Consensus 2374 T~~ALs~EQ~G~w~~AQ~~YE~a~~k 2399 (2426)
...|.+|.+.|.|++|.+.|++|...
T Consensus 5 ~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 5 YYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35789999999999999999998765
No 61
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=37.95 E-value=1.7e+02 Score=34.03 Aligned_cols=73 Identities=18% Similarity=0.321 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhhhcCC--chhhHHHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCChhhHHHhhHHHHhhhcCCCC
Q psy5930 999 LRKAAMRALASWHYVP--NCSQKIFNTLFAALERPNPELQEAAFQAMKTFVNGSPIDLKSVYEVMKPLLLTLGDYRN 1073 (2426)
Q Consensus 999 LRv~ci~lL~~~~~~~--~~~~rIi~vfFKsL~s~s~ei~~aA~~gLk~vL~~~~~~~e~L~q~LRPiL~nLsD~k~ 1073 (2426)
.|..|+..|+.-.... ..+..++..+.++|.-++++|.+.|..++.++.... .|+.+.+.+-.++-.|++...
T Consensus 41 VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~--~~~~i~~~~~e~i~~l~~~~~ 115 (178)
T PF12717_consen 41 VRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIRSLARSFFSELLKKR--NPNIIYNNFPELISSLNNCYE 115 (178)
T ss_pred HHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHhCccc
Confidence 6788888877654332 244577788899999999999999999999986542 677788889999999998654
No 62
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=37.57 E-value=48 Score=27.03 Aligned_cols=26 Identities=35% Similarity=0.454 Sum_probs=23.2
Q ss_pred hHHHHHHHHhccHHHHHHHHHHHHHh
Q psy5930 2374 TLYALAYEQQGFYEQALKAYEVTIKK 2399 (2426)
Q Consensus 2374 T~~ALs~EQ~G~w~~AQ~~YE~a~~k 2399 (2426)
+..|..|.+.|++++|.+.|+++..-
T Consensus 5 ~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 5 YNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56799999999999999999998754
No 63
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=36.99 E-value=1e+03 Score=30.55 Aligned_cols=164 Identities=14% Similarity=0.190 Sum_probs=89.6
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHhcCCCCCCCCCccCchhhHHHHHHHHHHHHHhhhccccCCCCCCcchHHHHHH
Q psy5930 1803 QRGLVACISSSITKVIRLVHALLCRLMSTFPTEPISSNVASKREELDHLYVCVSKVIYEGLSNYEKNPTATCSTLYGTVM 1882 (2426)
Q Consensus 1803 q~lL~kcl~~~n~~i~~~l~~ll~rll~~~p~~~~~~~~~~~~~e~~~f~~~l~~~i~e~L~~~~~~~~~~~~~~~~~l~ 1882 (2426)
-+.+.|.++...+.+.++-..-+..++. . . .......-...|...+.+++.+..++.. +.+.+..+.|...
T Consensus 63 ~~~~~kGl~~kk~~vR~~w~~~~~~~~~--~--~---~~~~~~~~~~~~~~~L~~~~~~~~~~p~--~~~~~~~~~~a~~ 133 (339)
T PF12074_consen 63 VDAFKKGLKDKKPPVRRAWLLCLGEALW--E--S---PNSDSLKFAEPFLPKLLQSLKEASANPL--QSAQNGELVGAYV 133 (339)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHHh--h--c---cCchHHHHHHHHHHHHHHHHHHHHhCCC--CccccccHHHHHH
Confidence 3455567777766677665444444443 1 1 0123344566777788888888777632 2223344445544
Q ss_pred HHH------------------HHhhhCchhh--hHhhHH---------HHHHHHHHHHHhhccCCCCCCccchHHHHHHH
Q psy5930 1883 MLK------------------AACMNHPAYV--DRFILE---------FMRVIQRMAREHIATSTADAPQQVGGELLIYC 1933 (2426)
Q Consensus 1883 lL~------------------~~~~~~p~~i--D~~l~~---------lmk~l~kl~keHl~~~~~~~~~~~~~~ll~~~ 1933 (2426)
++- ......|+++ |++..- ++|++..+..+|-....... ....-...
T Consensus 134 ~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~----~~~~~~a~ 209 (339)
T PF12074_consen 134 LLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLASEEDLCWLLRALEALLSDHPSELSSDK----SSAWAQAF 209 (339)
T ss_pred HHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhH----HHHHHHHH
Confidence 444 1234455543 333333 67777777777765422221 12233333
Q ss_pred HHHHhHhhhcCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhc
Q psy5930 1934 LDLVKTRFCSMSQETRKQFIGTIILGLIDKTPDIKVMKAIIKMTEEWLKV 1983 (2426)
Q Consensus 1934 leLl~~Rv~~lg~d~Rr~fls~l~~~LiekS~d~~ll~~Il~iv~~Wv~~ 1983 (2426)
+.++-. ...+.+.||.=++.+-. +..+.+. .+-..|++-+.+|+..
T Consensus 210 i~ll~s--~~~~~~vR~~A~~~l~~-l~~~~~~-~l~~~li~~l~~~l~~ 255 (339)
T PF12074_consen 210 IYLLCS--SNVSWKVRRAALSALKK-LYASNPE-LLSKSLISGLWKWLSS 255 (339)
T ss_pred HHHHHc--CCCCHHHHHHHHHHHHH-HHHhChH-HHHHHHHHHHHHHHHh
Confidence 444333 22355788887776544 6655543 3888889999999864
No 64
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=36.46 E-value=55 Score=26.81 Aligned_cols=29 Identities=21% Similarity=0.275 Sum_probs=25.0
Q ss_pred HHHHHHHhhcCCChhhhhHHHHHHHHHHH
Q psy5930 727 LIDAIAVILGHEDKELCKPGYIALKCIME 755 (2426)
Q Consensus 727 l~DAi~~~l~~~~~~~~~~~~~~l~~~~~ 755 (2426)
++..+...+.+++.++|++|..++..+.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 46788999999999999999999998876
No 65
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=35.84 E-value=4.8e+02 Score=34.60 Aligned_cols=152 Identities=16% Similarity=0.228 Sum_probs=95.7
Q ss_pred HHHHHhcCCCCCCCCccCCChhHHHHHHHHHHHHHhhcccccccccccchhhhcccchhcccCCcccCCCCCCChhhhHH
Q psy5930 1427 EFIAKIISPITESPPVFVISDNVRILLLQMCCLIVEQSYHYVYNVSQGKILVNKAKPLIMFAWQLSLLGKNFVDPATRYH 1506 (2426)
Q Consensus 1427 ~~~~ki~~~~~~~~~~~~~~D~lrieLLQLstlLvk~~~~~i~~~~~~~~l~~~rK~lIkFaW~~i~l~~~~~D~~~K~~ 1506 (2426)
.++.++.-|..... ....+.=+|.+....+++. .|++.....+-++|+ ||. -.+.|+.
T Consensus 216 ~fl~~vllPLh~~~----~~~~y~~~L~~~~~~f~~k---------dp~l~~~~i~~llk~-WP~--------t~s~Kev 273 (409)
T PF01603_consen 216 QFLRKVLLPLHKSP----HLSSYHQQLSYCVVQFLEK---------DPSLAEPVIKGLLKH-WPK--------TNSQKEV 273 (409)
T ss_dssp HHHHHTTGGGGGST----GGGGTHHHHHHHHHHHHHH----------GGGHHHHHHHHHHH-S-S--------S-HHHHH
T ss_pred HHHHHHHHHHhcCC----cHHHHHHHHHHHHHHHHHh---------CchhHHHHHHHHHHh-CCC--------CCchhHH
Confidence 45555655553211 1133445556666666655 466666677767775 993 5567999
Q ss_pred HHHHHHHHHHhhccC----cchhhHhhHHhhhhcCcchHHHHHHHHHhhcCCCCCCCCCchhhHHHHHHHHHhccCCChh
Q psy5930 1507 GHLLLAHMIAKFGVS----QRVVVQVFLGLLRAHASEVRPIVRQALEILTPAFPGRVDDGQRMLLVYTKKILVEEGHSNP 1582 (2426)
Q Consensus 1507 Ayvlia~fI~~f~~P----~KIVlQVfvaLLra~q~E~R~LVrqALDIL~P~Lp~R~~~~~~~w~~~tkkiL~EEgh~~~ 1582 (2426)
.|+..---|-.. +| .+++.++|..|-++-+++.-.++.+||.++---
T Consensus 274 ~FL~el~~il~~-~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~---------------------------- 324 (409)
T PF01603_consen 274 LFLNELEEILEV-LPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNE---------------------------- 324 (409)
T ss_dssp HHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSH----------------------------
T ss_pred HHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCH----------------------------
Confidence 988755444332 33 677788899999999999999999999886321
Q ss_pred hHHHHHHHHhcCCccchhhhhhhHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHHHh
Q psy5930 1583 QLSHVLTLIVKHYKVYYPVRHGLIQQMIASMQRLGFSSSAMDHKKLSVELADVIIKW 1639 (2426)
Q Consensus 1583 Ql~hI~qlIVRH~dlFY~~R~~fvp~mInsl~kLg~~~n~~E~r~LAiDL~elIi~W 1639 (2426)
++.+++.+ .++..+|.|..+|.+.+-.-=...-|.+|.++..++..=
T Consensus 325 ---~~~~li~~-------~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~ 371 (409)
T PF01603_consen 325 ---YFLSLISQ-------NSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEM 371 (409)
T ss_dssp ---HHHHHHHC-------THHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTT
T ss_pred ---HHHHHHHh-------ChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 23344433 346778899999988653211255688888888877754
No 66
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=35.47 E-value=1.9e+02 Score=34.23 Aligned_cols=96 Identities=14% Similarity=0.212 Sum_probs=66.6
Q ss_pred cCCchhhHHHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCChhhHHHhhHHHHhhhcC---CCCCCHhHHHHHHHhhhh
Q psy5930 1012 YVPNCSQKIFNTLFAALERPNPELQEAAFQAMKTFVNGSPIDLKSVYEVMKPLLLTLGD---YRNLNLVTARKLSYIVQP 1088 (2426)
Q Consensus 1012 ~~~~~~~rIi~vfFKsL~s~s~ei~~aA~~gLk~vL~~~~~~~e~L~q~LRPiL~nLsD---~k~Ltv~gLegLarLLeL 1088 (2426)
..|.++..++.=+.=|.-+.++.++.+|..+|-+++.+....++.+.+-++=++.++.+ .-|..+|.|+-++.|++=
T Consensus 80 ~~~~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~~~~~~~~~~~~v~~~l~~il~~~~~~dRv~vP~l~tl~~Ll~~ 159 (193)
T PF12612_consen 80 DLPEYRYSLLSGLVVSAGGLTESLVRASSAALLSYLRELSDSPEELEQVLSDLLSILKENLRNDRVVVPLLKTLDFLLSS 159 (193)
T ss_pred ccHHHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCCCCCeeecHHHHHHHHHhC
Confidence 34466777888888899999999999999999999975444444444444444444444 478999999999999875
Q ss_pred --CCCcccH---HHHHHHHHHHHH
Q psy5930 1089 --FPSSFSE---KLCEQLLVNLKN 1107 (2426)
Q Consensus 1089 --L~nyFkv---eiG~KLLdHLk~ 1107 (2426)
+...... ...++|++-+++
T Consensus 160 ~~~~~~~~~~~~~~~~~L~~~~~~ 183 (193)
T PF12612_consen 160 GVFDSLPEDSDSPFLRKLFDLVQK 183 (193)
T ss_pred cchhcccccccchHHHHHHHHHHH
Confidence 2222222 456666665544
No 67
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=34.72 E-value=1e+02 Score=40.25 Aligned_cols=121 Identities=19% Similarity=0.243 Sum_probs=76.3
Q ss_pred hHHHHHHHHHHHHHHccChhhHHHHHHh-----hHHHHHHH------HhhcccHHHHhHHhhcCCCChhhHHHHHHHHHH
Q psy5930 276 KEEKEVLEHFAGVFSLMTPQTFREIFAS-----TIDYMVDR------MAHNYTLQVISNSFLVTRDTSPVFATVLVEYLL 344 (2426)
Q Consensus 276 ~eeke~le~fa~vF~~ld~~~F~Ei~~~-----~i~~l~e~------~~~n~~L~~i~q~fL~~~~~s~~F~~ill~fL~ 344 (2426)
.|=|-+|+.|+.-|+.|=..+..-+-+. .+.-+++. ++.+-..+-+|.+| +..-..+.+++..||-
T Consensus 16 ~eik~vl~~~~~pll~l~~~~~~~i~~~~~~~~~l~~~~~~l~lilKiF~sL~~~DLPe~f---ed~l~~wm~~f~~~L~ 92 (370)
T PF08506_consen 16 TEIKYVLDKFAEPLLELFKQTDQLIEANANNAASLKVLFEMLKLILKIFYSLNCQDLPEFF---EDNLSEWMEIFHKYLT 92 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHSSS--HHH---HHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHccCcCcHHH---HHHHHHHHHHHHHHHc
Confidence 4678888888887765544444444332 11122221 22222333346555 2334578899999999
Q ss_pred HHhhhcCCCCccchhHHHHHHHHHhhhcccCCCCCcccccchHHHHHHHHHHHHH
Q psy5930 345 EHMEEMGNGNVERSNLCLKLFKLVFGSVSFYPAENEHMLRPHLHQIVNRSMELAM 399 (2426)
Q Consensus 345 ~~l~~lg~~~~~~~~~~lrLfkl~F~sv~~~~~~nE~vl~phl~~ii~~~~~~a~ 399 (2426)
-..+.++..|.+...++-++=+.++.-+++|....|-...||+++.+..-..+-+
T Consensus 93 ~~~p~l~~~d~~e~~~l~kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~ 147 (370)
T PF08506_consen 93 YPNPALEEDDDDEPGLLEKVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLT 147 (370)
T ss_dssp --SGGG-TT-SSS--HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHT
T ss_pred CCCcccCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889998777788888889999999999999888888899999999887665543
No 68
>KOG2549|consensus
Probab=32.04 E-value=5.8e+02 Score=34.71 Aligned_cols=143 Identities=14% Similarity=0.201 Sum_probs=95.6
Q ss_pred cchhhHHHhhccC---CCCCccHHHHHHHHHHHHHHHhcCChhHHHHhhHHHHHHHHHHHhcC---------ch-hHHHH
Q psy5930 1754 FKLTWLDKVLSSI---DQPTANLGNISIALELLTLLITILDEGQILHIIKPLQRGLVACISSS---------IT-KVIRL 1820 (2426)
Q Consensus 1754 vkl~~feK~L~~~---d~~~~n~~~~~naLevL~il~~~~~~~~il~nl~~lq~lL~kcl~~~---------n~-~i~~~ 1820 (2426)
.=+-||--++... +....|+.-+++.++|..-++.+..- .+---+..|-..+-.|+-+. || .+.+.
T Consensus 239 ~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i-~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDf 317 (576)
T KOG2549|consen 239 QLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNI-FLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDF 317 (576)
T ss_pred HHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCcc-chhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHH
Confidence 4455666666532 22245678899999999999988542 11112222333344455433 23 35566
Q ss_pred HHHHHHHHHhcCCCCCCCCCccCchhhHHHHHHHHHHHHHhhhccccCCCCCCcchHHHHHHHHHHHhhhCchhhhHhhH
Q psy5930 1821 VHALLCRLMSTFPTEPISSNVASKREELDHLYVCVSKVIYEGLSNYEKNPTATCSTLYGTVMMLKAACMNHPAYVDRFIL 1900 (2426)
Q Consensus 1821 l~~ll~rll~~~p~~~~~~~~~~~~~e~~~f~~~l~~~i~e~L~~~~~~~~~~~~~~~~~l~lL~~~~~~~p~~iD~~l~ 1900 (2426)
...++..|+..|+. -...+...|..+....|.+- ..+-+..+|++..|.++.. ..|..++-
T Consensus 318 AA~ll~~i~k~f~~------------~y~~L~~Rit~tl~k~l~D~----~~~~st~YGai~gL~~lg~---~~I~~~il 378 (576)
T KOG2549|consen 318 AARLLAQICKNFST------------LYNNLQPRITRTLSKALLDN----KKPLSTHYGAIAGLSELGH---EVIRTVIL 378 (576)
T ss_pred HHHHHHHHHHhhhh------------HHHHHHHHHHHHHHHHhcCC----CCCchhhhhHHHHHHHhhh---hhhhheec
Confidence 66777888877762 34457888888888888773 3347888999999999996 77888888
Q ss_pred HHHHHHHHHHHHhhcc
Q psy5930 1901 EFMRVIQRMAREHIAT 1916 (2426)
Q Consensus 1901 ~lmk~l~kl~keHl~~ 1916 (2426)
+=++.-...++-|+..
T Consensus 379 p~L~~~~~~l~~~l~~ 394 (576)
T KOG2549|consen 379 PNLKEYNERLQSVLDV 394 (576)
T ss_pred cchHHHHHHhhhhccc
Confidence 8888888888888753
No 69
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=31.39 E-value=16 Score=45.36 Aligned_cols=28 Identities=50% Similarity=0.834 Sum_probs=21.9
Q ss_pred HhcCCchhHHhhhhhhh----hhhccCCcchhhh
Q psy5930 485 ALNGSSTLISQGLRTLE----LCVDNLQPDFLYD 514 (2426)
Q Consensus 485 AL~~~~eLvsqGLRTLE----lcVDNLtpdfLdp 514 (2426)
-|.|+. -|++|+.|| +|||||+|..+..
T Consensus 8 GlSGaG--Ks~Al~~lED~Gy~cvDNlP~~Ll~~ 39 (284)
T PF03668_consen 8 GLSGAG--KSTALRALEDLGYYCVDNLPPSLLPQ 39 (284)
T ss_pred CCCcCC--HHHHHHHHHhcCeeEEcCCcHHHHHH
Confidence 455544 689999999 9999999986443
No 70
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=30.60 E-value=2.2e+02 Score=38.34 Aligned_cols=138 Identities=17% Similarity=0.151 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHhhCCchhhcchhhHHHHHHHHHHhccCchhhhhHhHHHHHHHHHHhchHHHHH-----------H
Q psy5930 745 PGYIALKCIMETATCITGSIENACNLPLMEYLAERMCNLCYERAWYAKLGGCYAIKFFYNTMAIKWVY-----------S 813 (2426)
Q Consensus 745 ~~~~~l~~~~~~~~~i~~~~~~~~~~p~~~~L~~rf~~~Cy~~~w~~K~gG~~gi~~l~~~~~~~wl~-----------~ 813 (2426)
.+..||...++| |..+...+ |+....+.-++-+--=|.-.+=++..|.-.+|.+|.. +
T Consensus 356 IstyAITtLLKT-----Gt~e~idr------Lv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~e 424 (898)
T COG5240 356 ISTYAITTLLKT-----GTEETIDR------LVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQE 424 (898)
T ss_pred chHHHHHHHHHc-----CchhhHHH------HHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhc
Confidence 344455544443 55555443 3444444444444444566677777787788877752 2
Q ss_pred HHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcC-----------CCCCCCchhhhhhhhhhHHHHHHHHhhh
Q psy5930 814 HMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCAT-----------PIKEPVDAETLTVQSKALSEVTNELTRN 882 (2426)
Q Consensus 814 ~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~lv~e 882 (2426)
-.++|=|+.+-+|-|+-...|.. .+.|-+.|=.-++-|.- +..++.. ....+...++...++-|
T Consensus 425 Gg~eFK~~~Vdaisd~~~~~p~s-kEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a----~~P~~yvrhIyNR~iLE 499 (898)
T COG5240 425 GGLEFKKYMVDAISDAMENDPDS-KERALEVLCTFIEDCEYHQITVRILGILGREGPRA----KTPGKYVRHIYNRLILE 499 (898)
T ss_pred ccchHHHHHHHHHHHHHhhCchH-HHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCC----CCcchHHHHHHHHHHHh
Confidence 34567788888888888888775 45555544444443311 1111100 01134456666666667
Q ss_pred cCCCChHHHHHHHHHHHHHH
Q psy5930 883 ITLPNDLLREQSMYLLQVFA 902 (2426)
Q Consensus 883 L~s~n~~VR~~aq~~L~~la 902 (2426)
|.+||.+|-+||...|
T Consensus 500 ----N~ivRsaAv~aLskf~ 515 (898)
T COG5240 500 ----NNIVRSAAVQALSKFA 515 (898)
T ss_pred ----hhHHHHHHHHHHHHhc
Confidence 9999999999998776
No 71
>KOG2274|consensus
Probab=29.70 E-value=2e+03 Score=31.71 Aligned_cols=117 Identities=14% Similarity=0.087 Sum_probs=66.5
Q ss_pred hhH-HHHHHHHHHhccCchhhhhHhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHH
Q psy5930 771 PLM-EYLAERMCNLCYERAWYAKLGGCYAIKFFYNTMAIKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLI 849 (2426)
Q Consensus 771 p~~-~~L~~rf~~~Cy~~~w~~K~gG~~gi~~l~~~~~~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll 849 (2426)
+++ ..|...++..--+..-+.|.|.|.++-... .++-+...|.-|+++|+.+..+-..| +-.++...|
T Consensus 486 ~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~---~~~vl~~~~p~ild~L~qlas~~s~e--------vl~llmE~L 554 (1005)
T KOG2274|consen 486 QLLQHFLNATVNALTMDVPPPVKISAVRAFCGYC---KVKVLLSLQPMILDGLLQLASKSSDE--------VLVLLMEAL 554 (1005)
T ss_pred hHHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc---CceeccccchHHHHHHHHHcccccHH--------HHHHHHHHH
Confidence 344 345566666666777777887777665444 67778889999999999976554433 333444444
Q ss_pred HHHcCCCCCCCchhhhhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHH
Q psy5930 850 VLCATPIKEPVDAETLTVQSKALSEVTNELTRNITLPNDLLREQSMYLLQVFAET 904 (2426)
Q Consensus 850 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~eL~s~n~~VR~~aq~~L~~lae~ 904 (2426)
..+++-..+. ..+.+++-....+..+..- +-.+.|-..+|.+++-+...
T Consensus 555 s~vv~~dpef----~as~~skI~P~~i~lF~k~--s~DP~V~~~~qd~f~el~q~ 603 (1005)
T KOG2274|consen 555 SSVVKLDPEF----AASMESKICPLTINLFLKY--SEDPQVASLAQDLFEELLQI 603 (1005)
T ss_pred HHHhccChhh----hhhhhcchhHHHHHHHHHh--cCCchHHHHHHHHHHHHHHH
Confidence 4444321211 1122233222222222222 22338889999999877753
No 72
>KOG0213|consensus
Probab=28.87 E-value=1.9e+03 Score=31.18 Aligned_cols=143 Identities=19% Similarity=0.250 Sum_probs=98.6
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHcc---C--CCChhhHHHhhHHHHhhhcCCCCCCHhHHHHHHHhhhhCCCcc
Q psy5930 1019 KIFNTLFAALERPNPELQEAAFQAMKTFVNG---S--PIDLKSVYEVMKPLLLTLGDYRNLNLVTARKLSYIVQPFPSSF 1093 (2426)
Q Consensus 1019 rIi~vfFKsL~s~s~ei~~aA~~gLk~vL~~---~--~~~~e~L~q~LRPiL~nLsD~k~Ltv~gLegLarLLeLL~nyF 1093 (2426)
..-.|++..|-..-||+..---.|++...+- + .-|-+.|+-.|.|||-| .|+|.-.++++-+.+.--.=+.|-
T Consensus 841 ~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILkn--rheKVqen~IdLvg~IadrgpE~v 918 (1172)
T KOG0213|consen 841 HLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKN--RHEKVQENCIDLVGTIADRGPEYV 918 (1172)
T ss_pred HhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhh--hHHHHHHHHHHHHHHHHhcCcccC
Confidence 6677899999999999877666666655533 2 34568999999999987 689999999999999999999988
Q ss_pred cH----HHHHHHHHHHHHhhhhhhhhhcCCCCCCcchhHHHHHHHhhccCchh--HHhhHHHHHHHHHHHHHhcCCC---
Q psy5930 1094 SE----KLCEQLLVNLKNLFENIVAQKENPPKNSETEKIIVVIIGIFKESPAA--KAQFIEPLISLILENEHALSIG--- 1164 (2426)
Q Consensus 1094 kv----eiG~KLLdHLk~~~e~~~~~~~~~~~~~~~~kii~aIinIFHLLP~a--a~~Fle~Lv~~Vl~lE~~L~~~--- 1164 (2426)
.+ .||=-|+|-||+|-.. |-.+-+|-|..+.-| ...-|.-|.+..=-=|++.|-.
T Consensus 919 ~aREWMRIcfeLlelLkahkK~----------------iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtv 982 (1172)
T KOG0213|consen 919 SAREWMRICFELLELLKAHKKE----------------IRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTV 982 (1172)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhh
Confidence 86 5999999999999652 223444555443211 1234445555544455655522
Q ss_pred -------CCCCCcchHHHHHhhC
Q psy5930 1165 -------PYSPYREPLVKYLLRY 1180 (2426)
Q Consensus 1165 -------~~SPfR~PL~kfLnRy 1180 (2426)
..+||.. |--.+|-|
T Consensus 983 aIaIVaE~c~pFtV-LPalmneY 1004 (1172)
T KOG0213|consen 983 AIAIVAETCGPFTV-LPALMNEY 1004 (1172)
T ss_pred hhhhhhhhcCchhh-hHHHHhhc
Confidence 3577754 33344444
No 73
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=28.84 E-value=8.1e+02 Score=33.68 Aligned_cols=153 Identities=17% Similarity=0.196 Sum_probs=100.5
Q ss_pred CChHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHhhCCchhhcchhhHHHHHHHHHHhccCchhhhhHhHHHHHHH
Q psy5930 722 MDPLVLIDAIAVILGHEDKELCKPGYIALKCIMETATCITGSIENACNLPLMEYLAERMCNLCYERAWYAKLGGCYAIKF 801 (2426)
Q Consensus 722 ld~~vl~DAi~~~l~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~p~~~~L~~rf~~~Cy~~~w~~K~gG~~gi~~ 801 (2426)
+-|.=++|+++..|..++.+.|-....||.++.+++- || ..+..+.+----++-....|=.-++.+
T Consensus 761 iGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cg------------pf--sVlP~lm~dY~TPe~nVQnGvLkam~f 826 (975)
T COG5181 761 IGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCG------------PF--SVLPTLMSDYETPEANVQNGVLKAMCF 826 (975)
T ss_pred cCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcC------------ch--hhHHHHHhcccCchhHHHHhHHHHHHH
Confidence 4456699999999999999888777778877777542 11 233444444445567777888888888
Q ss_pred HHHhch---HHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhhhhhhhhHHHHHHH
Q psy5930 802 FYNTMA---IKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAETLTVQSKALSEVTNE 878 (2426)
Q Consensus 802 l~~~~~---~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 878 (2426)
|++.++ ..+++.--.-+-.|| .|=...-+..|..++.++.-.|... .. ...+-++...
T Consensus 827 mFeyig~~s~dYvy~itPlleDAl--------tDrD~vhRqta~nvI~Hl~Lnc~gt--g~---------eda~IHLlNl 887 (975)
T COG5181 827 MFEYIGQASLDYVYSITPLLEDAL--------TDRDPVHRQTAMNVIRHLVLNCPGT--GD---------EDAAIHLLNL 887 (975)
T ss_pred HHHHHHHHHHHHHHHhhHHHHhhh--------cccchHHHHHHHHHHHHHhcCCCCc--cc---------HHHHHHHHHH
Confidence 988773 455544333333333 2322333556777777765444322 11 1246667777
Q ss_pred HhhhcCCCChHHHHHHHHHHHHHHHHhCC
Q psy5930 879 LTRNITLPNDLLREQSMYLLQVFAETQGK 907 (2426)
Q Consensus 879 lv~eL~s~n~~VR~~aq~~L~~lae~t~~ 907 (2426)
|...+..|.+||-+....+++.+|...|.
T Consensus 888 lwpNIle~sPhvi~~~~Eg~e~~~~~lg~ 916 (975)
T COG5181 888 LWPNILEPSPHVIQSFDEGMESFATVLGS 916 (975)
T ss_pred hhhhccCCCcHHHHHHHHHHHHHHHHhcc
Confidence 88888889999999999999999988773
No 74
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=28.65 E-value=71 Score=28.12 Aligned_cols=25 Identities=20% Similarity=0.205 Sum_probs=22.4
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Q psy5930 2375 LYALAYEQQGFYEQALKAYEVTIKK 2399 (2426)
Q Consensus 2375 ~~ALs~EQ~G~w~~AQ~~YE~a~~k 2399 (2426)
..|-.|++.|.+++|.++|+.+...
T Consensus 6 ~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 6 ALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4577999999999999999999876
No 75
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=27.87 E-value=2e+03 Score=31.18 Aligned_cols=127 Identities=13% Similarity=0.156 Sum_probs=63.7
Q ss_pred CchhHHHHHHHHhhCCCCHHHHHHHHHhhHHHHHHHHhhcCCCCCCCcchHHHhHHHHHHHHHHHHHHhcCchhh--hcC
Q psy5930 1195 KDPLWRNFFVYLIKHQEGKCFRDALQTQFVDRLILYTFSAINPNCTNLTTAEKLEMQYIGIRLVSILIKLDTKWL--SSQ 1272 (2426)
Q Consensus 1195 ~~~~~~~~f~~il~~~~a~~Lr~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lv~~l~k~~~~WL--~~~ 1272 (2426)
.||-...+++.|-+|+. +.+.-+.. |...|+....... . -++....+-++..+.-.+.+|- .++
T Consensus 466 ~D~lLlKlIRNiS~h~~--~~k~~f~~-~i~~L~~~v~~~~------~-----ee~~vE~LGiLaNL~~~~ld~~~ll~~ 531 (708)
T PF05804_consen 466 RDPLLLKLIRNISQHDG--PLKELFVD-FIGDLAKIVSSGD------S-----EEFVVECLGILANLTIPDLDWAQLLQE 531 (708)
T ss_pred ccHHHHHHHHHHHhcCc--hHHHHHHH-HHHHHHHHhhcCC------c-----HHHHHHHHHHHHhcccCCcCHHHHHHh
Confidence 46666677788888763 45554543 3666654322111 0 1222233333333332344564 335
Q ss_pred hhHHHHHHHHhhchHHHHhhccccc----cccc-ccchHH-----HHHHHHHHHHhhCCCchhhHHHHHHHHhh
Q psy5930 1273 NQLISVMQKIWCDDEYLQRHRNVEN----ISYV-HWKEPK-----LLVKILLHYFSHHRHIIDLLFFILRAVTE 1336 (2426)
Q Consensus 1273 ~~~v~~L~~~w~~~~~~~r~~~~~~----~~~~-~~~~~~-----~l~~i~l~yl~~~~~~~dlLF~ll~~~~~ 1336 (2426)
..++.+|++.......... -..+. -+.. ...+.. -++..++.-++...+|-++..+++-+|..
T Consensus 532 ~~llp~L~~~L~~g~~~dD-l~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ 604 (708)
T PF05804_consen 532 YNLLPWLKDLLKPGASEDD-LLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQ 604 (708)
T ss_pred CCHHHHHHHHhCCCCCChH-HHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHH
Confidence 5777888777643210000 00000 0000 111122 24667777788888899999999988743
No 76
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=27.36 E-value=1.7e+03 Score=30.31 Aligned_cols=268 Identities=16% Similarity=0.173 Sum_probs=146.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCccccc---hhhHHHhhccCCCCCccHHHHHHHHHHHHHHHhcCChhHHHHhhHH--HH
Q psy5930 1729 MLARRCVSLIRMALKPEVWSHQNTEFK---LTWLDKVLSSIDQPTANLGNISIALELLTLLITILDEGQILHIIKP--LQ 1803 (2426)
Q Consensus 1729 ~L~~r~l~LLk~~L~p~~W~~~~v~vk---l~~feK~L~~~d~~~~n~~~~~naLevL~il~~~~~~~~il~nl~~--lq 1803 (2426)
..++.|..+|+.+.+. .+..+.-++ +.-+.+.+... |-..-+..++++.-+....+.. .+.+.. +-
T Consensus 134 ~Va~~A~~~L~~l~~~--~~~~~~l~~~~~~~~L~~l~~~~-----~~~vR~Rv~el~v~i~~~S~~~--~~~~~~sgll 204 (503)
T PF10508_consen 134 SVAKAAIKALKKLASH--PEGLEQLFDSNLLSKLKSLMSQS-----SDIVRCRVYELLVEIASHSPEA--AEAVVNSGLL 204 (503)
T ss_pred HHHHHHHHHHHHHhCC--chhHHHHhCcchHHHHHHHHhcc-----CHHHHHHHHHHHHHHHhcCHHH--HHHHHhccHH
Confidence 3999999999999853 321110001 22233333221 1123345666666665554332 233332 45
Q ss_pred HHHHHHHhcCchhHHHHHHHHHHHHHhcCCCCCCCCCccCchhhHHHHHHHHHHHHHhhhccccCCCCCCcchHHHHHHH
Q psy5930 1804 RGLVACISSSITKVIRLVHALLCRLMSTFPTEPISSNVASKREELDHLYVCVSKVIYEGLSNYEKNPTATCSTLYGTVMM 1883 (2426)
Q Consensus 1804 ~lL~kcl~~~n~~i~~~l~~ll~rll~~~p~~~~~~~~~~~~~e~~~f~~~l~~~i~e~L~~~~~~~~~~~~~~~~~l~l 1883 (2426)
..+.+++.++..-++-..-.++..+.+ .| + +-+.=+-..+...+.+.+.+.- .+|..+.-.+.|.+..
T Consensus 205 ~~ll~eL~~dDiLvqlnalell~~La~-~~-~------g~~yL~~~gi~~~L~~~l~~~~----~dp~~~~~~l~g~~~f 272 (503)
T PF10508_consen 205 DLLLKELDSDDILVQLNALELLSELAE-TP-H------GLQYLEQQGIFDKLSNLLQDSE----EDPRLSSLLLPGRMKF 272 (503)
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHHc-Ch-h------HHHHHHhCCHHHHHHHHHhccc----cCCcccchhhhhHHHH
Confidence 556668888887788888888877765 22 1 1011112234444444444432 2221223344455555
Q ss_pred HHHHhhhCchhhhHhhHHHHHHHHHHHH-----------HhhccCCCCCCcc-----chHHHHHHHHHHHhHhhhcCCHH
Q psy5930 1884 LKAACMNHPAYVDRFILEFMRVIQRMAR-----------EHIATSTADAPQQ-----VGGELLIYCLDLVKTRFCSMSQE 1947 (2426)
Q Consensus 1884 L~~~~~~~p~~iD~~l~~lmk~l~kl~k-----------eHl~~~~~~~~~~-----~~~~ll~~~leLl~~Rv~~lg~d 1947 (2426)
.-.++...|..+=...|.|+..+..+.. |+++.-.+..++. ...+-+..++.-+..++.....|
T Consensus 273 ~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~ 352 (503)
T PF10508_consen 273 FGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTE 352 (503)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchH
Confidence 5555566777665666777766553211 2221100000000 01123456777778888888889
Q ss_pred HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhccccCCCCCCChhHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHh
Q psy5930 1948 TRKQFIGTIILGLIDKTPDIKVMKAIIKMTEEWLKVNKVEQNNVPNLKEKCIILVKLMHFVEKRFPDLNTMFLEIVLYVY 2027 (2426)
Q Consensus 1948 ~Rr~fls~l~~~LiekS~d~~ll~~Il~iv~~Wv~~~~~~~~~~PtlKEKa~lL~KM~~fe~r~~~~L~~~flelV~~Iy 2027 (2426)
.|-..+.++.. +++..++ +--..|+.+.+.|...-. .-|.. . -++.+-...|||+...-|.++-.++
T Consensus 353 lk~r~l~al~~-il~~~~~-~~~~~i~~~~~~w~~~~~----~~~~~----~---~l~~~~~qPF~elr~a~~~~l~~l~ 419 (503)
T PF10508_consen 353 LKLRALHALAS-ILTSGTD-RQDNDILSITESWYESLS----GSPLS----N---LLMSLLKQPFPELRCAAYRLLQALA 419 (503)
T ss_pred HHHHHHHHHHH-HHhcCCC-CchHHHHHHHHHHHHHhc----CCchH----H---HHHHHhcCCchHHHHHHHHHHHHHh
Confidence 99999998877 6443332 344556699999975421 11221 1 4455556788999999999999998
Q ss_pred cCC
Q psy5930 2028 MDE 2030 (2426)
Q Consensus 2028 ~d~ 2030 (2426)
..+
T Consensus 420 ~~~ 422 (503)
T PF10508_consen 420 AQP 422 (503)
T ss_pred cCH
Confidence 743
No 77
>KOG1062|consensus
Probab=27.25 E-value=2.1e+03 Score=31.13 Aligned_cols=263 Identities=16% Similarity=0.257 Sum_probs=130.1
Q ss_pred CCCCCccHHHHHHHHHHHHHHHhcCChhHHHHhhHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhcCCCCCCCCCccCch
Q psy5930 1766 IDQPTANLGNISIALELLTLLITILDEGQILHIIKPLQRGLVACISSSITKVIRLVHALLCRLMSTFPTEPISSNVASKR 1845 (2426)
Q Consensus 1766 ~d~~~~n~~~~~naLevL~il~~~~~~~~il~nl~~lq~lL~kcl~~~n~~i~~~l~~ll~rll~~~p~~~~~~~~~~~~ 1845 (2426)
.|..+.|...+|-||=.|+.+. +++-+-+- -..+++-++..++-|.+-.---.-|+..+.|
T Consensus 114 nDL~s~nq~vVglAL~alg~i~---s~Emardl----apeVe~Ll~~~~~~irKKA~Lca~r~irK~P------------ 174 (866)
T KOG1062|consen 114 NDLNSSNQYVVGLALCALGNIC---SPEMARDL----APEVERLLQHRDPYIRKKAALCAVRFIRKVP------------ 174 (866)
T ss_pred hhccCCCeeehHHHHHHhhccC---CHHHhHHh----hHHHHHHHhCCCHHHHHHHHHHHHHHHHcCc------------
Confidence 3556666666666666555443 44544443 4445555666666665422111123444444
Q ss_pred hhHHHHHHHHHHHHHhhhccccCCCCCCcchHHHHHHHHHHHhhhCchhhhHh---hHHHHHHHHHHHHHhhccCCCCCC
Q psy5930 1846 EELDHLYVCVSKVIYEGLSNYEKNPTATCSTLYGTVMMLKAACMNHPAYVDRF---ILEFMRVIQRMAREHIATSTADAP 1922 (2426)
Q Consensus 1846 ~e~~~f~~~l~~~i~e~L~~~~~~~~~~~~~~~~~l~lL~~~~~~~p~~iD~~---l~~lmk~l~kl~keHl~~~~~~~~ 1922 (2426)
+-++.|+..-.+.+.| |+ -..+.+++.++-.+|..+|+.++.| .+.|++.|..++---.++.-. .
T Consensus 175 ~l~e~f~~~~~~lL~e------k~----hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeyd--v 242 (866)
T KOG1062|consen 175 DLVEHFVIAFRKLLCE------KH----HGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYD--V 242 (866)
T ss_pred hHHHHhhHHHHHHHhh------cC----CceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccC--c
Confidence 2234555444444444 22 3445578999999999999988776 677777775554333322110 0
Q ss_pred ccchHH-HHHHHHHHHhHhhhcCCH---HHHHHHHHHHHHHHhccCCC------HHHHHHHHHHHHHHhhccccCCCCCC
Q psy5930 1923 QQVGGE-LLIYCLDLVKTRFCSMSQ---ETRKQFIGTIILGLIDKTPD------IKVMKAIIKMTEEWLKVNKVEQNNVP 1992 (2426)
Q Consensus 1923 ~~~~~~-ll~~~leLl~~Rv~~lg~---d~Rr~fls~l~~~LiekS~d------~~ll~~Il~iv~~Wv~~~~~~~~~~P 1992 (2426)
..+.-. |=+.++.+++- ||. |.-..+ +.++.+...|+.+ .-|-.++.-|+. -..-+
T Consensus 243 ~gi~dPFLQi~iLrlLri----LGq~d~daSd~M-~DiLaqvatntdsskN~GnAILYE~V~TI~~---------I~~~~ 308 (866)
T KOG1062|consen 243 HGISDPFLQIRILRLLRI----LGQNDADASDLM-NDILAQVATNTDSSKNAGNAILYECVRTIMD---------IRSNS 308 (866)
T ss_pred cCCCchHHHHHHHHHHHH----hcCCCccHHHHH-HHHHHHHHhcccccccchhHHHHHHHHHHHh---------ccCCc
Confidence 111111 23344445443 221 222222 3333334433221 223333333332 12345
Q ss_pred ChhHHHH-HHHHHHHHHhhcCccHHHHHH--HHHHHH-hcCCcccCchhhhchhHHHhhccCCCChHHHHHHHHHHhh--
Q psy5930 1993 NLKEKCI-ILVKLMHFVEKRFPDLNTMFL--EIVLYV-YMDENLKNSELVTKLEPAFLSGLRCSNPALRAKFFQLLNG-- 2066 (2426)
Q Consensus 1993 tlKEKa~-lL~KM~~fe~r~~~~L~~~fl--elV~~I-y~d~~~~~tElt~rLE~aFL~Glrs~d~~iR~kF~~i~d~-- 2066 (2426)
.++|+++ +|.|-+. .++=+.+|. +.+.++ -.||+ ...|=-...+--|+.+|+.||+|=|++.-.
T Consensus 309 ~LrvlainiLgkFL~-----n~d~NirYvaLn~L~r~V~~d~~-----avqrHr~tIleCL~DpD~SIkrralELs~~lv 378 (866)
T KOG1062|consen 309 GLRVLAINILGKFLL-----NRDNNIRYVALNMLLRVVQQDPT-----AVQRHRSTILECLKDPDVSIKRRALELSYALV 378 (866)
T ss_pred hHHHHHHHHHHHHhc-----CCccceeeeehhhHHhhhcCCcH-----HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 6777765 6666443 222223333 223332 22332 333333446667788899999888776543
Q ss_pred --hhccCHHHHHHHHhhhc
Q psy5930 2067 --SIRRLLHDRLLYIFSSQ 2083 (2426)
Q Consensus 2067 --sl~~~l~~RL~YIi~~Q 2083 (2426)
+-=+.+-++|.+-+.++
T Consensus 379 n~~Nv~~mv~eLl~fL~~~ 397 (866)
T KOG1062|consen 379 NESNVRVMVKELLEFLESS 397 (866)
T ss_pred ccccHHHHHHHHHHHHHhc
Confidence 33334566666666444
No 78
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=27.06 E-value=2e+03 Score=32.08 Aligned_cols=60 Identities=10% Similarity=0.022 Sum_probs=38.6
Q ss_pred HHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHhhCCchhhcchhhHHHHHHHHHHhccCchhhhhHhHHHHHHHHHH
Q psy5930 727 LIDAIAVILGHEDKELCKPGYIALKCIMETATCITGSIENACNLPLMEYLAERMCNLCYERAWYAKLGGCYAIKFFYN 804 (2426)
Q Consensus 727 l~DAi~~~l~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~p~~~~L~~rf~~~Cy~~~w~~K~gG~~gi~~l~~ 804 (2426)
-++.++..|.++++.+|..|..+|..+- +.+ .+..|. ..--++.+..+...+.++.-+.+
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~--------~~~------~~~~L~----~aL~D~d~~VR~~Aa~aL~~l~~ 681 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETT--------PPG------FGPALV----AALGDGAAAVRRAAAEGLRELVE 681 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhc--------chh------HHHHHH----HHHcCCCHHHHHHHHHHHHHHHh
Confidence 4678899999999999999998887652 111 112222 22246666666666666655544
No 79
>PRK09687 putative lyase; Provisional
Probab=26.50 E-value=3.9e+02 Score=33.55 Aligned_cols=57 Identities=12% Similarity=0.056 Sum_probs=39.0
Q ss_pred HHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHhhCCchhhcchhhHHHHHHHHHHhccCchhhhhHhHHHHHHHH
Q psy5930 728 IDAIAVILGHEDKELCKPGYIALKCIMETATCITGSIENACNLPLMEYLAERMCNLCYERAWYAKLGGCYAIKFF 802 (2426)
Q Consensus 728 ~DAi~~~l~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~p~~~~L~~rf~~~Cy~~~w~~K~gG~~gi~~l 802 (2426)
++.+...|.+++..++..+..++..+ |+. ..+..+..+|.++.-..+..|+-++..|
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~--------~~~----------~~~~~l~~ll~~~d~~vR~~A~~aLg~l 81 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLR--------GGQ----------DVFRLAIELCSSKNPIERDIGADILSQL 81 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhc--------Ccc----------hHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 56677777888888888887777644 321 2334455567777777788877777665
No 80
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=26.48 E-value=91 Score=31.75 Aligned_cols=36 Identities=31% Similarity=0.240 Sum_probs=31.1
Q ss_pred CchhhHHHHHHHHhccHHHHHHHHHHHHHhhhhccc
Q psy5930 2370 KHKETLYALAYEQQGFYEQALKAYEVTIKKGLEEYA 2405 (2426)
Q Consensus 2370 ~~~ET~~ALs~EQ~G~w~~AQ~~YE~a~~k~~~~~a 2405 (2426)
.|.+=+.||.++-.|.+++|...|++|+.-..++.+
T Consensus 8 A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~a 43 (79)
T cd02679 8 AFEEISKALRADEWGDKEQALAHYRKGLRELEEGIA 43 (79)
T ss_pred HHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcC
Confidence 356778999999999999999999999988777655
No 81
>KOG4653|consensus
Probab=25.25 E-value=1.1e+03 Score=33.86 Aligned_cols=204 Identities=17% Similarity=0.150 Sum_probs=104.4
Q ss_pred hHHHHHHHHHHHhhhCchhhhHhhHHHHHHHHHHHHHhhccCCCCCCccchHHHHHHHHHHHhHhhhcCCHHHHHHHHHH
Q psy5930 1876 TLYGTVMMLKAACMNHPAYVDRFILEFMRVIQRMAREHIATSTADAPQQVGGELLIYCLDLVKTRFCSMSQETRKQFIGT 1955 (2426)
Q Consensus 1876 ~~~~~l~lL~~~~~~~p~~iD~~l~~lmk~l~kl~keHl~~~~~~~~~~~~~~ll~~~leLl~~Rv~~lg~d~Rr~fls~ 1955 (2426)
.+..+....-..+...-+-++.++. .++-.-++..|-+. .++....+..+-+...+..+-.--. -.|-.=+..
T Consensus 678 ~~~~a~~~~eQ~~n~~t~e~~~Ll~--~~I~~~lvn~ptt~-rsd~~~s~~~e~~qeai~sl~d~qv----pik~~gL~~ 750 (982)
T KOG4653|consen 678 PIAAAKPLKEQLFNLGTREINPLLQ--QSIDSLLVNIPTTR-RSDRRYSVDIEPLQEAISSLHDDQV----PIKGYGLQM 750 (982)
T ss_pred hhhhccchHHHHhhccccccchHHh--ccchhhhccCCCCc-cccccccccHHHHHHHHHHhcCCcc----cchHHHHHH
Confidence 3445566666666777777777766 22333456666653 2222334555556666555533221 233333333
Q ss_pred HHHHHhc--cCCCHHHHHHHHHHHHHHhhccccCCCCCCCh---------hHH--HHHHHHHHH-HHhhcC-c--cHHHH
Q psy5930 1956 IILGLID--KTPDIKVMKAIIKMTEEWLKVNKVEQNNVPNL---------KEK--CIILVKLMH-FVEKRF-P--DLNTM 2018 (2426)
Q Consensus 1956 l~~~Lie--kS~d~~ll~~Il~iv~~Wv~~~~~~~~~~Ptl---------KEK--a~lL~KM~~-fe~r~~-~--~L~~~ 2018 (2426)
+ ..++| +-..-....++++++-+.++.. ++|=-+ =|+ -.+|-++.. |++... + +..-.
T Consensus 751 l-~~l~e~r~~~~~~~~ekvl~i~ld~Lkde----dsyvyLnaI~gv~~Lcevy~e~il~dL~e~Y~s~k~k~~~d~~lk 825 (982)
T KOG4653|consen 751 L-RHLIEKRKKATLIQGEKVLAIALDTLKDE----DSYVYLNAIRGVVSLCEVYPEDILPDLSEEYLSEKKKLQTDYRLK 825 (982)
T ss_pred H-HHHHHhcchhhhhhHHHHHHHHHHHhccc----CceeeHHHHHHHHHHHHhcchhhHHHHHHHHHhcccCCCccceeh
Confidence 3 34777 3333344566777777776542 222111 111 112222222 211111 1 10000
Q ss_pred HHHHHHHHhcCCcccCch----hhhchhHHHhhccCCCChHHHHHHHHHHhhhhccCHHHHHHHHhhhcCCCccCCcccH
Q psy5930 2019 FLEIVLYVYMDENLKNSE----LVTKLEPAFLSGLRCSNPALRAKFFQLLNGSIRRLLHDRLLYIFSSQNWEPMGPHYWL 2094 (2426)
Q Consensus 2019 flelV~~Iy~d~~~~~tE----lt~rLE~aFL~Glrs~d~~iR~kF~~i~d~sl~~~l~~RL~YIi~~QnWe~lad~~WL 2094 (2426)
-=|.++.+-. +..| +..+|...||.|.|.+|...|..=|.++-. +.+|+.+-.++ |.
T Consensus 826 VGEai~k~~q----a~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~-----Lcq~~a~~vsd----------~~ 886 (982)
T KOG4653|consen 826 VGEAILKVAQ----ALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQ-----LCQLLAFQVSD----------FF 886 (982)
T ss_pred HHHHHHHHHH----HhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHH-----HHHHHhhhhhH----------HH
Confidence 0012222111 1223 445789999999998888889877777643 55566655532 99
Q ss_pred HHHHHHHHhhhccccc
Q psy5930 2095 KQCIELILVSAISSSK 2110 (2426)
Q Consensus 2095 kqal~LLL~~~~~~~~ 2110 (2426)
.++++.++.....+..
T Consensus 887 ~ev~~~Il~l~~~d~s 902 (982)
T KOG4653|consen 887 HEVLQLILSLETTDGS 902 (982)
T ss_pred HHHHHHHHHHHccCCc
Confidence 9999999988765443
No 82
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=25.03 E-value=2.9e+02 Score=29.68 Aligned_cols=58 Identities=22% Similarity=0.122 Sum_probs=45.3
Q ss_pred hhHHHHHHHHHHhcCccHHHHHHHhhhc-Cchhh-----HHHHHHHHhccHHHHHHHHHHHHHh
Q psy5930 2342 QDIIDQLAEMYSALREEDMWFGLWQKNA-KHKET-----LYALAYEQQGFYEQALKAYEVTIKK 2399 (2426)
Q Consensus 2342 ~~~~DaL~eLY~~L~E~D~~~GlWrrra-~~~ET-----~~ALs~EQ~G~w~~AQ~~YE~a~~k 2399 (2426)
...+..++..|..+++.|.-...+++-. ..+++ +.|..|.+.|+|++|.+.|+.+...
T Consensus 51 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 51 SRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3466789999999998888777777653 22322 2488999999999999999988876
No 83
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=25.02 E-value=4.6e+02 Score=35.78 Aligned_cols=146 Identities=21% Similarity=0.220 Sum_probs=99.7
Q ss_pred CCCHHHHHHHHHHHHhhHhhHhhhcCCCcccccCCCCCCcccccchhHHHHHHHHhcCCCCCCCCccCCChhHHHHHHHH
Q psy5930 1377 LVSQELKAKILQLVLIPCLTVCFERGEGDKLIGGTGLPEDEDNKNANLVNEFIAKIISPITESPPVFVISDNVRILLLQM 1456 (2426)
Q Consensus 1377 ~~~~~~k~~~L~~iv~P~L~~~f~~~~~~~~i~~~~~~~~~~~~~~~~v~~~~~ki~~~~~~~~~~~~~~D~lrieLLQL 1456 (2426)
..+...|.++|+++.--..+.... ++.+..+..-+..+ +....+|-.-+|+
T Consensus 294 pa~~~lq~kIL~~L~kS~~Aa~~~---------------------~~~~~i~~~~l~~~--------~~~~klk~~~l~F 344 (501)
T PF13001_consen 294 PASPRLQEKILSLLSKSVIAATSF---------------------PNILQIVFDGLYSD--------NTNSKLKSLALQF 344 (501)
T ss_pred CCCHHHHHHHHHHHHHhHHHHhCC---------------------ccHHHHHhccccCC--------ccccccchhcchh
Confidence 567778889988888766653220 12222222222111 0123445555566
Q ss_pred H---HHHHhhcccccccccccchhhhcccchhcccCCcccC----CCCCCChhhhHHHHHHHHHHHHhhccCc----chh
Q psy5930 1457 C---CLIVEQSYHYVYNVSQGKILVNKAKPLIMFAWQLSLL----GKNFVDPATRYHGHLLLAHMIAKFGVSQ----RVV 1525 (2426)
Q Consensus 1457 s---tlLvk~~~~~i~~~~~~~~l~~~rK~lIkFaW~~i~l----~~~~~D~~~K~~Ayvlia~fI~~f~~P~----KIV 1525 (2426)
. .-.++++ .++.+...|.-|..=+|+-+.. ....+|...|..||-.++.+..+..-.. .++
T Consensus 345 ~~~~~~~~~~~--------~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li 416 (501)
T PF13001_consen 345 IRGSSWIFKHI--------SPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDLSLI 416 (501)
T ss_pred hhcchHHhhhc--------CHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCcccccccHHHH
Confidence 6 5555554 3566778888899999996620 1245799999999999999998876433 456
Q ss_pred hHhhHHhhhhcCcchHHHHHHHHHhhcCCCCCCCC
Q psy5930 1526 VQVFLGLLRAHASEVRPIVRQALEILTPAFPGRVD 1560 (2426)
Q Consensus 1526 lQVfvaLLra~q~E~R~LVrqALDIL~P~Lp~R~~ 1560 (2426)
-..|-+| ....+|.|.=|.+||--|+|+++.-.+
T Consensus 417 ~~LF~sL-~~~~~evr~sIqeALssl~~af~~~~~ 450 (501)
T PF13001_consen 417 EFLFDSL-EDESPEVRVSIQEALSSLAPAFKDLPD 450 (501)
T ss_pred HHHHHHh-hCcchHHHHHHHHHHHHHHHHHhcccc
Confidence 7778888 889999999999999999999986433
No 84
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=23.81 E-value=3.7e+02 Score=29.53 Aligned_cols=85 Identities=15% Similarity=0.196 Sum_probs=48.9
Q ss_pred ChHHHHHHhhhcCcHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHhcCccHHHHHH
Q psy5930 2285 KPAIMTYLGKAQGLWHRVTLSLEKMAVEGLLKQNRMQNRAPSVADCYDFEPDHAPQQQDIIDQLAEMYSALREEDMWFGL 2364 (2426)
Q Consensus 2285 PP~LikyLgkt~naW~~ai~~LE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DaL~eLY~~L~E~D~~~Gl 2364 (2426)
|+.+|..+ ...+.....+.+||.....+ .......+.|.++|....+.+..-=+
T Consensus 10 ~~~vv~~~-~~~~~~~~l~~yLe~~~~~~-------------------------~~~~~~~~~li~ly~~~~~~~ll~~l 63 (140)
T smart00299 10 VSEVVELF-EKRNLLEELIPYLESALKLN-------------------------SENPALQTKLIELYAKYDPQKEIERL 63 (140)
T ss_pred HHHHHHHH-HhCCcHHHHHHHHHHHHccC-------------------------ccchhHHHHHHHHHHHHCHHHHHHHH
Confidence 45688888 45568889999999876521 01123556799999888776655322
Q ss_pred HhhhcCchhhHHHHHHHHhccHHHHHHHHHH
Q psy5930 2365 WQKNAKHKETLYALAYEQQGFYEQALKAYEV 2395 (2426)
Q Consensus 2365 Wrrra~~~ET~~ALs~EQ~G~w~~AQ~~YE~ 2395 (2426)
=...-.|.=-.++=-.++.|.|++|--+|.+
T Consensus 64 ~~~~~~yd~~~~~~~c~~~~l~~~~~~l~~k 94 (140)
T smart00299 64 DNKSNHYDIEKVGKLCEKAKLYEEAVELYKK 94 (140)
T ss_pred HhccccCCHHHHHHHHHHcCcHHHHHHHHHh
Confidence 2122333322222234555666655555543
No 85
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=23.79 E-value=7.1e+02 Score=31.29 Aligned_cols=212 Identities=14% Similarity=0.120 Sum_probs=0.0
Q ss_pred HHHHHHhhhcCCCChHHHHHHHHHHHHHHHHh---CCchhhccccchhhhhccCCCCc----------------------
Q psy5930 874 EVTNELTRNITLPNDLLREQSMYLLQVFAETQ---GKSVVQVMEPHKDVLADIIPPKK---------------------- 928 (2426)
Q Consensus 874 ~~~~~lv~eL~s~n~~VR~~aq~~L~~lae~t---~~~v~ell~p~k~~Ll~~I~~Kp---------------------- 928 (2426)
+++..+..--...++...+.+++.-..+=+.. +.....+++..-..-+.|+|.|.
T Consensus 1 dvl~~l~~~~~~~~~Wtt~~s~~ia~~il~~~~~~~~~~~~~~~~~L~~~lrPlf~k~~~~~~t~~gr~~l~P~~~~~~~ 80 (282)
T PF10521_consen 1 DVLLALSAHTNPEDPWTTEESAQIATSILEQFLSLSESPESIIERILIDTLRPLFSKSKNPRITSSGRKGLRPKLGFSFD 80 (282)
T ss_pred CHHHHHHHHcCCCCCCccHHHHHHHHHHHHHhhccccCcHHHHHHHHHHHHhHHhcCCCCcccccccccccCCCCccccc
Q ss_pred ---cccccCchhhhHhhh-hhhhhhcccCCCccccCcchhhHHHHHHHHHHhhccCchhhhcCCCCCCccccchHHHHHH
Q psy5930 929 ---LLIRNHSANAQIGLM-EGNTFCQSLTPRLFTTDMSIHEHSSFFQEITNICESSDQALMKLPCYKPISSLVPLRKAAM 1004 (2426)
Q Consensus 929 ---l~lRalpf~~QIG~i-daitfcl~L~p~~l~~~~~~~el~rll~E~l~LadadD~~l~k~~~~k~~~~lv~LRv~ci 1004 (2426)
+ ...|.-...|.. -.+.||+...-.--.+. +..-.++==.|.+.|..+.. -|.-++
T Consensus 81 ~~~~--~~~~WK~~~~~~~~~l~w~v~~~~~~~~i~---~~~~liiP~iL~llDD~~~~---------------~K~~G~ 140 (282)
T PF10521_consen 81 DDEL--QRQPWKSNPGLASHVLSWIVLSQLDRPWIS---QHWPLIIPPILNLLDDYSPE---------------IKIQGC 140 (282)
T ss_pred cccc--ccCCcccCCcccHHHHHHHHHhcCCcchHH---HhhhHHHhhHHHHhcCCCHH---------------HHHHHH
Q ss_pred HHHHhhhcCCc------hhh-----HHHHHHHHhhc--------CCCHHHHHHHHHHHHHH-----HccCCCChhhHHHh
Q psy5930 1005 RALASWHYVPN------CSQ-----KIFNTLFAALE--------RPNPELQEAAFQAMKTF-----VNGSPIDLKSVYEV 1060 (2426)
Q Consensus 1005 ~lL~~~~~~~~------~~~-----rIi~vfFKsL~--------s~s~ei~~aA~~gLk~v-----L~~~~~~~e~L~q~ 1060 (2426)
++|..-..... ++. =+...++++|| ..+.++.++|+.||... -.....-...+-.-
T Consensus 141 ~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~ 220 (282)
T PF10521_consen 141 QLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKI 220 (282)
T ss_pred HHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHH
Q ss_pred hHH-HHhhhcCCCCCCHhHHHHHHHhhhhCCCcccHHHHHHHHHHHHHh
Q psy5930 1061 MKP-LLLTLGDYRNLNLVTARKLSYIVQPFPSSFSEKLCEQLLVNLKNL 1108 (2426)
Q Consensus 1061 LRP-iL~nLsD~k~Ltv~gLegLarLLeLL~nyFkveiG~KLLdHLk~~ 1108 (2426)
||= ||.++....+ .+-.+--.-+++-++.+++. +|-...-||++.
T Consensus 221 l~e~IL~~~~~~~~--~~~~~l~~~ll~~l~~~i~~-lGi~~~~hL~ri 266 (282)
T PF10521_consen 221 LREGILSSMEHESS--FSYPRLRTVLLQQLPPIIDE-LGISSVKHLQRI 266 (282)
T ss_pred HHHHHhhhceeccc--cCchhHHHHHHHHHHHHHHH-hccHHHHHHHHH
No 86
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=23.20 E-value=93 Score=30.41 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=22.9
Q ss_pred hHHHHHHHHhccHHHHHHHHHHHHHh
Q psy5930 2374 TLYALAYEQQGFYEQALKAYEVTIKK 2399 (2426)
Q Consensus 2374 T~~ALs~EQ~G~w~~AQ~~YE~a~~k 2399 (2426)
.+.|..|...|.|++|.+.|++|..-
T Consensus 9 ~~la~~~~~~~~~~~A~~~~~~al~~ 34 (78)
T PF13424_consen 9 NNLARVYRELGRYDEALDYYEKALDI 34 (78)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 57788999999999999999999877
No 87
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=22.94 E-value=1e+02 Score=23.01 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=22.0
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Q psy5930 2375 LYALAYEQQGFYEQALKAYEVTIKK 2399 (2426)
Q Consensus 2375 ~~ALs~EQ~G~w~~AQ~~YE~a~~k 2399 (2426)
+.|..|.+.|.+++|...|+.++..
T Consensus 6 ~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 6 NLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 6789999999999999999988743
No 88
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=22.77 E-value=2.4e+02 Score=35.11 Aligned_cols=81 Identities=16% Similarity=0.227 Sum_probs=61.5
Q ss_pred hhcCCCHHHHHHHHHHHHHHHccCC---CChhhHHHhhHHHHhhhcCCCCCCHhHHHHHHHhhhhCCCcccHHHHHHHHH
Q psy5930 1027 ALERPNPELQEAAFQAMKTFVNGSP---IDLKSVYEVMKPLLLTLGDYRNLNLVTARKLSYIVQPFPSSFSEKLCEQLLV 1103 (2426)
Q Consensus 1027 sL~s~s~ei~~aA~~gLk~vL~~~~---~~~e~L~q~LRPiL~nLsD~k~Ltv~gLegLarLLeLL~nyFkveiG~KLLd 1103 (2426)
.|++.++.+.+.|-+.|-.||..-. +.+++++--+.=.+-.|.|+..+... |+||..|++. ++|..+.+.+++.
T Consensus 7 ~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~~~~~~-l~gl~~L~~~--~~~~~~~~~~i~~ 83 (262)
T PF14500_consen 7 YLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHACVQPA-LKGLLALVKM--KNFSPESAVKILR 83 (262)
T ss_pred hhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHhhHHHH-HHHHHHHHhC--cCCChhhHHHHHH
Confidence 5889999999999999999997633 44555544355556678888887666 9999999955 6688888888888
Q ss_pred HHHHhhh
Q psy5930 1104 NLKNLFE 1110 (2426)
Q Consensus 1104 HLk~~~e 1110 (2426)
.+-+-.+
T Consensus 84 ~l~~~~~ 90 (262)
T PF14500_consen 84 SLFQNVD 90 (262)
T ss_pred HHHHhCC
Confidence 7755444
No 89
>KOG3961|consensus
Probab=22.12 E-value=1e+02 Score=36.64 Aligned_cols=71 Identities=27% Similarity=0.396 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHhhhcCccchhhhHHhhhhhccccccccccCCcchhhHHHHHHhcC-CchhHHhhhhhhhhhh
Q psy5930 430 FLPLLRNLLQGLNSLQSGLHKQQMKDLFVELCLTVPVRLSSLLPYLPMLMDPLVSALNG-SSTLISQGLRTLELCV 504 (2426)
Q Consensus 430 ilPLLp~lLe~Ln~Ll~~~~~~~~RdL~VELCLTVPvRLS~LLPyL~~LM~PLV~AL~~-~~eLvsqGLRTLElcV 504 (2426)
+-|+||-+.++|-.|- .+++---|.=+.+|.+.-+ -..+|-||.|+.||=.||+. +.+.+--+|.+|-..|
T Consensus 112 y~~yLp~F~dGL~e~~-hpyrf~A~~Gi~DLLl~~g---~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv 183 (262)
T KOG3961|consen 112 YCPYLPLFFDGLAETD-HPYRFVARQGITDLLLAGG---EKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLV 183 (262)
T ss_pred chHHHHHHhhhhhhcC-CCcchhhhhcHHHHHHhcc---cccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 6788999999996654 5777777888888988888 78999999999999999987 5578899999988765
No 90
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=21.64 E-value=1.5e+03 Score=29.15 Aligned_cols=109 Identities=13% Similarity=0.104 Sum_probs=66.0
Q ss_pred HHHHhcchhHHHhHHH-HHHHHHHHHHHHHHHhhcCCCCCCcccccccCCCChHHHHHHHHHhhcCCChhhhhHHHHHHH
Q psy5930 673 IFMVYLIKELRKDSLL-YTVLVVRHYTLVAITQQTGPFPLYGKSALLEGTMDPLVLIDAIAVILGHEDKELCKPGYIALK 751 (2426)
Q Consensus 673 ~f~a~~~~~l~~~a~~-f~~~v~rhf~l~~i~~~~~~~~~~~~~~~~~~~ld~~vl~DAi~~~l~~~~~~~~~~~~~~l~ 751 (2426)
.+....-+|..+.|.. .+..++.|+..+ . ..+ |.-++|++...|++....+|+.=..++.
T Consensus 26 ~l~~~~~KE~nE~aL~~~l~al~~~~~~~--~----------------~~~-~~~~~~~~~kGl~~kk~~vR~~w~~~~~ 86 (339)
T PF12074_consen 26 GLSPLLSKESNEAALSALLSALFKHLFFL--S----------------SEL-PKKVVDAFKKGLKDKKPPVRRAWLLCLG 86 (339)
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHh--C----------------cCC-CHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 4455566777777766 555678887666 1 011 2448999999999999999988777776
Q ss_pred HHHHHHHHhhCCch-hhcchhhHHHHHHHHHHhccCchhhhhHhHHHHHHHHHH
Q psy5930 752 CIMETATCITGSIE-NACNLPLMEYLAERMCNLCYERAWYAKLGGCYAIKFFYN 804 (2426)
Q Consensus 752 ~~~~~~~~i~~~~~-~~~~~p~~~~L~~rf~~~Cy~~~w~~K~gG~~gi~~l~~ 804 (2426)
..+. ..++.. ...-.++...|..-+-...-.+.=....|+..|.-+++-
T Consensus 87 ~~~~----~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~ 136 (339)
T PF12074_consen 87 EALW----ESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA 136 (339)
T ss_pred HHHh----hccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH
Confidence 5554 001111 111123444555555445555655556677777766665
No 91
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=21.52 E-value=1.1e+03 Score=34.72 Aligned_cols=75 Identities=13% Similarity=0.119 Sum_probs=45.5
Q ss_pred HHHHHHHhhcCCChhhhhHHHHHHHHHHHH------HHHhhCCchhhcchhhHHHH-------HHHHHHhccCchhhhhH
Q psy5930 727 LIDAIAVILGHEDKELCKPGYIALKCIMET------ATCITGSIENACNLPLMEYL-------AERMCNLCYERAWYAKL 793 (2426)
Q Consensus 727 l~DAi~~~l~~~~~~~~~~~~~~l~~~~~~------~~~i~~~~~~~~~~p~~~~L-------~~rf~~~Cy~~~w~~K~ 793 (2426)
.+++|...|.+++.++|..+..+|..+.+. ....+++.+...+......| ...+...+-++.+..+.
T Consensus 653 ~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~ 732 (897)
T PRK13800 653 FGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRI 732 (897)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHH
Confidence 678888888888888888888888766432 11223332222221111111 13456677788888887
Q ss_pred hHHHHHHH
Q psy5930 794 GGCYAIKF 801 (2426)
Q Consensus 794 gG~~gi~~ 801 (2426)
..+.++.-
T Consensus 733 ~Av~aL~~ 740 (897)
T PRK13800 733 EAVRALVS 740 (897)
T ss_pred HHHHHHhc
Confidence 77777654
No 92
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=21.30 E-value=1.7e+03 Score=27.92 Aligned_cols=97 Identities=20% Similarity=0.275 Sum_probs=54.9
Q ss_pred cCCHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhccccCCCCCCChhHHHHHHHHHHHHHhhcCccHHHHHHHH
Q psy5930 1943 SMSQETRKQFIGTIILGLIDKTPDIKVMKAIIKMTEEWLKVNKVEQNNVPNLKEKCIILVKLMHFVEKRFPDLNTMFLEI 2022 (2426)
Q Consensus 1943 ~lg~d~Rr~fls~l~~~LiekS~d~~ll~~Il~iv~~Wv~~~~~~~~~~PtlKEKa~lL~KM~~fe~r~~~~L~~~flel 2022 (2426)
.+.+|.|...+.+.+ +..+.+....+.+ +... .++.-||..+|.-|-.. +++++.+.+|+.
T Consensus 166 ~i~~dlr~~v~~~~~-----~~g~~~~~~~l~~----~~~~-------~~~~~~k~~~l~aLa~~---~d~~~~~~~l~~ 226 (324)
T PF11838_consen 166 SIPPDLRWAVYCAGV-----RNGDEEEWDFLWE----LYKN-------STSPEEKRRLLSALACS---PDPELLKRLLDL 226 (324)
T ss_dssp TS-HHHHHHHHHHHT-----TS--HHHHHHHHH----HHHT-------TSTHHHHHHHHHHHTT----S-HHHHHHHHHH
T ss_pred ccchHHHHHHHHHHH-----HHhhHhhHHHHHH----HHhc-------cCCHHHHHHHHHhhhcc---CCHHHHHHHHHH
Confidence 466677777765443 2344444433333 3332 22457788887766443 577888888888
Q ss_pred HHHHhcCCcccCchhhhchhHHHhhccCCCChHHHHHHHHHHhh
Q psy5930 2023 VLYVYMDENLKNSELVTKLEPAFLSGLRCSNPALRAKFFQLLNG 2066 (2426)
Q Consensus 2023 V~~Iy~d~~~~~tElt~rLE~aFL~Glrs~d~~iR~kF~~i~d~ 2066 (2426)
++. +...+..+. ...+.|+.+.++.-|.-..+.+.+
T Consensus 227 ~l~---~~~v~~~d~-----~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 227 LLS---NDKVRSQDI-----RYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHC---TSTS-TTTH-----HHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred HcC---CcccccHHH-----HHHHHHHhcCChhhHHHHHHHHHH
Confidence 876 333444443 556667777788777777766644
No 93
>KOG2023|consensus
Probab=20.83 E-value=9.6e+02 Score=33.43 Aligned_cols=173 Identities=16% Similarity=0.183 Sum_probs=103.0
Q ss_pred HHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHhhCCchhhcchhhHHHHHHHHHHhccCchhhhhHhHHHHHHHHHHhc
Q psy5930 727 LIDAIAVILGHEDKELCKPGYIALKCIMETATCITGSIENACNLPLMEYLAERMCNLCYERAWYAKLGGCYAIKFFYNTM 806 (2426)
Q Consensus 727 l~DAi~~~l~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~p~~~~L~~rf~~~Cy~~~w~~K~gG~~gi~~l~~~~ 806 (2426)
+++.+++.|.++....++.|..|+..|+|-..-++.+.-. .-| ++-+..+|...--.++-.-+.-++.-++..+-.
T Consensus 129 lLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~--~rp-l~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~- 204 (885)
T KOG2023|consen 129 LLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVL--TRP-LNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIII- 204 (885)
T ss_pred HHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcc--cCc-hHHhHHHHHHHHhCCChhHHHHHHhhhhheeec-
Confidence 8899999999999999999999999999988777766544 222 244555555443333333333222222222211
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhhhhhhhhHHHHHHHHhhhcCCC
Q psy5930 807 AIKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAETLTVQSKALSEVTNELTRNITLP 886 (2426)
Q Consensus 807 ~~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~eL~s~ 886 (2426)
-..=++.|.-.|+..|+..--|-.++ ++...=..+..++.+--... -..+.++++-...-...+
T Consensus 205 ~~qal~~~iD~Fle~lFalanD~~~e----VRk~vC~alv~Llevr~dkl------------~phl~~IveyML~~tqd~ 268 (885)
T KOG2023|consen 205 QTQALYVHIDKFLEILFALANDEDPE----VRKNVCRALVFLLEVRPDKL------------VPHLDNIVEYMLQRTQDV 268 (885)
T ss_pred CcHHHHHHHHHHHHHHHHHccCCCHH----HHHHHHHHHHHHHHhcHHhc------------ccchHHHHHHHHHHccCc
Confidence 22445556666776666654444444 44333334445554422111 123777888888888888
Q ss_pred ChHHHHHHHHHHHHHHHHhCCchhhccccchhhhh
Q psy5930 887 NDLLREQSMYLLQVFAETQGKSVVQVMEPHKDVLA 921 (2426)
Q Consensus 887 n~~VR~~aq~~L~~lae~t~~~v~ell~p~k~~Ll 921 (2426)
|..|-=.|=.-...+||.. --.+++.||-..|.
T Consensus 269 dE~VALEACEFwla~aeqp--i~~~~L~p~l~kli 301 (885)
T KOG2023|consen 269 DENVALEACEFWLALAEQP--ICKEVLQPYLDKLI 301 (885)
T ss_pred chhHHHHHHHHHHHHhcCc--CcHHHHHHHHHHHH
Confidence 8877655555666677643 33456677766654
No 94
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=20.66 E-value=2.2e+03 Score=29.05 Aligned_cols=112 Identities=15% Similarity=0.172 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHhhhcCCch-hhHHHHHHHHhhcCC-CHHHHHHHHHHHHHHHccCCCChhh--------HHHhhHHHHhh
Q psy5930 998 PLRKAAMRALASWHYVPNC-SQKIFNTLFAALERP-NPELQEAAFQAMKTFVNGSPIDLKS--------VYEVMKPLLLT 1067 (2426)
Q Consensus 998 ~LRv~ci~lL~~~~~~~~~-~~rIi~vfFKsL~s~-s~ei~~aA~~gLk~vL~~~~~~~e~--------L~q~LRPiL~n 1067 (2426)
..|.+++++|.+|...++- ..-.-..||+.+... +++-...--++|+. |..+.+.-+- |.+-|.|++..
T Consensus 44 e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~~d~~~~l~aL~~-LT~~Grdi~~~~~~i~~~L~~wl~~~~~~ 122 (464)
T PF11864_consen 44 EARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSNDDDFDLRLEALIA-LTDNGRDIDFFEYEIGPFLLSWLEPSYQA 122 (464)
T ss_pred HHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCchhHHHHHHHHHH-HHcCCcCchhcccchHHHHHHHHHHHHHH
Confidence 5799999999999988876 333446799999765 56677777788875 4444433332 33336666522
Q ss_pred hc------------CCCCCCH--hHHHHHHHhhhh-------CCCcccHHHHHHHHHHHHHhhh
Q psy5930 1068 LG------------DYRNLNL--VTARKLSYIVQP-------FPSSFSEKLCEQLLVNLKNLFE 1110 (2426)
Q Consensus 1068 Ls------------D~k~Ltv--~gLegLarLLeL-------L~nyFkveiG~KLLdHLk~~~e 1110 (2426)
.+ ..+.++. ..-..++.|+++ ..++|..+.=..+++++=..|.
T Consensus 123 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~ 186 (464)
T PF11864_consen 123 ARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICK 186 (464)
T ss_pred HHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHh
Confidence 11 1222222 123344555554 4556676777777777766654
Done!