Query psy5930
Match_columns 2426
No_of_seqs 173 out of 248
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 22:09:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5930.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5930hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bpt_A Importin beta-1 subunit 98.6 4.8E-05 1.6E-09 105.0 41.9 539 436-1094 134-718 (861)
2 4fdd_A Transportin-1; heat rep 98.4 0.0012 4.1E-08 91.7 45.5 593 459-1156 154-803 (852)
3 1qgr_A Protein (importin beta 98.4 0.00029 1E-08 97.4 38.7 538 450-1095 143-730 (876)
4 2bpt_A Importin beta-1 subunit 98.4 0.002 6.7E-08 89.0 46.3 573 474-1156 131-730 (861)
5 1qgr_A Protein (importin beta 98.4 0.0027 9.3E-08 87.7 47.4 565 473-1156 124-741 (876)
6 4fdd_A Transportin-1; heat rep 98.2 0.004 1.4E-07 86.5 44.0 338 474-921 125-485 (852)
7 1u6g_C TIP120 protein, CAND1; 98.2 0.12 4.2E-06 74.6 59.4 450 280-827 105-620 (1230)
8 1u6g_C TIP120 protein, CAND1; 97.8 0.067 2.3E-06 77.3 46.0 579 333-1050 128-723 (1230)
9 1b3u_A Protein (protein phosph 97.8 0.03 1E-06 73.4 37.8 299 727-1088 204-510 (588)
10 1b3u_A Protein (protein phosph 97.7 0.02 6.8E-07 75.1 34.9 461 473-1072 83-570 (588)
11 1ibr_B P95, importin beta-1 su 96.2 0.49 1.7E-05 59.7 26.1 299 474-908 125-442 (462)
12 2x1g_F Cadmus; transport prote 95.7 13 0.00044 52.2 50.8 257 787-1091 476-764 (971)
13 2qk2_A LP04448P; mini spindles 95.4 0.15 5.2E-06 59.5 15.1 182 777-1049 17-206 (242)
14 1ibr_B P95, importin beta-1 su 95.2 0.59 2E-05 59.0 20.9 323 727-1091 91-441 (462)
15 3ibv_A Exportin-T; karyopherin 95.2 18 0.00061 51.0 37.9 657 308-1097 31-774 (980)
16 2z6g_A B-catenin; FULL-length, 95.1 2.6 8.9E-05 57.9 28.0 476 476-1105 191-681 (780)
17 2qk2_A LP04448P; mini spindles 95.0 0.36 1.2E-05 56.3 16.7 154 726-908 56-210 (242)
18 2z6h_A Catenin beta-1, beta-ca 94.1 12 0.00042 49.9 30.5 290 727-1086 225-526 (644)
19 2vgl_B AP-2 complex subunit be 93.6 9.3 0.00032 50.6 27.5 287 726-1051 121-422 (591)
20 1jdh_A Beta-catenin; beta-cate 92.2 21 0.00071 45.8 27.4 277 727-1073 228-514 (529)
21 2vgl_B AP-2 complex subunit be 91.8 2.3 7.9E-05 56.5 18.0 336 730-1154 53-399 (591)
22 3m1i_C Exportin-1; heat repeat 91.6 63 0.0022 45.8 34.0 153 786-954 464-621 (1049)
23 2jdq_A Importin alpha-1 subuni 91.1 3 0.0001 52.4 17.3 271 727-1049 65-348 (450)
24 2jdq_A Importin alpha-1 subuni 90.7 13 0.00043 46.6 22.5 276 726-1050 20-307 (450)
25 2x19_B Importin-13; nuclear tr 90.5 72 0.0025 44.4 53.8 235 279-552 24-269 (963)
26 3ul1_B Importin subunit alpha- 90.4 27 0.00093 45.2 25.9 94 998-1091 331-434 (510)
27 2x1g_F Cadmus; transport prote 89.9 12 0.00041 52.5 23.4 391 384-852 500-908 (971)
28 4hat_C Exportin-1; heat repeat 88.7 20 0.0007 50.7 24.0 397 772-1222 448-869 (1023)
29 1wa5_B Importin alpha subunit; 88.5 2.6 9E-05 54.8 14.1 271 727-1050 131-414 (530)
30 2vgl_A Adaptor protein complex 88.5 13 0.00045 49.6 21.1 366 727-1154 76-450 (621)
31 4b8j_A Importin subunit alpha- 88.3 22 0.00074 46.0 22.5 271 728-1049 76-359 (528)
32 3m1i_C Exportin-1; heat repeat 87.8 1.1E+02 0.0039 43.1 39.3 176 889-1090 428-621 (1049)
33 2qk1_A Protein STU2; STU2P, XM 87.4 4.5 0.00015 47.7 13.8 155 732-907 22-179 (249)
34 2qk1_A Protein STU2; STU2P, XM 86.7 2.1 7.1E-05 50.6 10.4 151 779-955 20-179 (249)
35 2iw3_A Elongation factor 3A; a 86.5 7.9 0.00027 54.1 17.3 184 669-906 55-240 (986)
36 4b8j_A Importin subunit alpha- 85.1 24 0.00081 45.6 20.3 307 727-1086 118-442 (528)
37 1wa5_C Importin alpha RE-expor 85.0 1.4E+02 0.005 41.6 46.1 356 739-1156 374-768 (960)
38 1w63_A Adapter-related protein 84.6 97 0.0033 41.1 26.3 253 1770-2068 118-378 (618)
39 1w63_A Adapter-related protein 82.9 1.4E+02 0.0047 39.7 32.2 347 663-1090 52-417 (618)
40 1wa5_B Importin alpha subunit; 82.3 35 0.0012 44.2 20.2 271 727-1049 88-371 (530)
41 3tpo_A Importin subunit alpha- 80.8 45 0.0015 43.3 20.5 316 727-1088 120-450 (529)
42 4db6_A Armadillo repeat protei 80.3 39 0.0013 37.5 17.1 154 727-903 55-209 (210)
43 4hxt_A De novo protein OR329; 79.7 58 0.002 36.8 18.8 156 727-906 87-244 (252)
44 2x19_B Importin-13; nuclear tr 77.6 75 0.0026 44.3 22.4 244 277-532 585-874 (963)
45 2vgl_A Adaptor protein complex 76.9 61 0.0021 43.2 20.1 257 1769-2066 121-395 (621)
46 4hxt_A De novo protein OR329; 76.4 1E+02 0.0035 34.7 19.6 232 778-1092 5-246 (252)
47 2z6g_A B-catenin; FULL-length, 75.4 64 0.0022 44.2 20.3 151 727-903 151-305 (780)
48 4ffb_C Protein STU2; tubulin f 75.0 9 0.00031 45.5 10.3 162 765-952 7-169 (278)
49 3gjx_A Exportin-1; transport, 74.1 1.6E+02 0.0056 41.8 23.9 382 786-1222 490-895 (1073)
50 1jdh_A Beta-catenin; beta-cate 73.7 59 0.002 41.5 18.4 153 727-903 18-172 (529)
51 1wa5_C Importin alpha RE-expor 73.7 1E+02 0.0035 43.2 22.1 375 728-1165 457-874 (960)
52 4db6_A Armadillo repeat protei 70.9 91 0.0031 34.4 16.9 109 778-903 15-125 (210)
53 1xqr_A HSPBP1 protein; armadil 70.9 86 0.0029 37.8 17.6 99 999-1099 141-248 (296)
54 4db8_A Armadillo-repeat protei 70.3 17 0.00057 41.8 10.9 152 727-902 97-250 (252)
55 2z6h_A Catenin beta-1, beta-ca 69.7 76 0.0026 42.2 18.5 153 727-903 15-169 (644)
56 3oc3_A Helicase MOT1, MOT1; re 67.0 7.3 0.00025 50.3 7.0 139 740-901 242-402 (800)
57 1w9c_A CRM1 protein, exportin 61.2 2.1E+02 0.0073 34.9 18.1 64 677-758 133-199 (321)
58 2of3_A ZYG-9; multifunctional 61.0 38 0.0013 40.4 11.4 118 725-915 131-248 (266)
59 3b2a_A TON_1937, putative unch 57.5 81 0.0028 36.9 12.7 146 727-906 34-182 (265)
60 3opb_A SWI5-dependent HO expre 57.0 1.2E+02 0.0042 41.2 16.5 228 807-1086 289-529 (778)
61 4ffb_C Protein STU2; tubulin f 55.3 50 0.0017 39.0 11.4 161 727-909 56-218 (278)
62 3ltj_A Alpharep-4; protein eng 54.8 27 0.00091 38.7 8.5 27 727-753 46-72 (201)
63 1oyz_A Hypothetical protein YI 52.0 3.3E+02 0.011 31.5 20.7 131 728-902 25-156 (280)
64 1hh8_A P67PHOX, NCF-2, neutrop 51.8 47 0.0016 36.3 9.9 90 2285-2399 36-150 (213)
65 3gjx_A Exportin-1; transport, 51.0 4.9E+02 0.017 37.0 21.8 98 1012-1111 559-670 (1073)
66 3ibv_A Exportin-T; karyopherin 49.2 7.4E+02 0.025 34.7 28.7 111 998-1111 208-336 (980)
67 4db8_A Armadillo-repeat protei 49.0 3.3E+02 0.011 30.6 22.0 109 778-903 15-125 (252)
68 3now_A UNC-45 protein, SD10334 47.9 6.6E+02 0.023 34.5 21.7 164 729-903 333-524 (810)
69 3gyz_A Chaperone protein IPGC; 47.1 78 0.0027 33.9 10.3 78 2297-2399 50-133 (151)
70 3ltm_A Alpha-REP4; protein eng 46.3 51 0.0017 36.8 9.0 27 727-753 51-77 (211)
71 1elr_A TPR2A-domain of HOP; HO 44.9 71 0.0024 31.2 9.0 79 2296-2399 17-108 (131)
72 2lni_A Stress-induced-phosphop 44.5 65 0.0022 31.7 8.7 88 2287-2399 17-113 (133)
73 3ltm_A Alpha-REP4; protein eng 43.7 70 0.0024 35.6 9.7 58 727-802 20-77 (211)
74 2npp_B PP2A, B subunit, serine 42.5 5.3E+02 0.018 32.9 18.1 255 1295-1638 123-399 (449)
75 3qww_A SET and MYND domain-con 42.4 53 0.0018 41.8 9.3 90 2294-2400 309-412 (433)
76 3ltj_A Alpharep-4; protein eng 41.8 91 0.0031 34.3 10.2 122 726-902 14-135 (201)
77 4gco_A Protein STI-1; structur 41.2 94 0.0032 31.7 9.5 86 2289-2399 16-110 (126)
78 2xcb_A PCRH, regulatory protei 40.9 85 0.0029 32.3 9.2 78 2297-2399 32-115 (142)
79 2xev_A YBGF; tetratricopeptide 40.0 95 0.0033 30.7 9.2 82 2296-2399 15-105 (129)
80 2vgx_A Chaperone SYCD; alterna 37.9 98 0.0033 32.5 9.2 79 2296-2399 34-118 (148)
81 3qky_A Outer membrane assembly 37.8 1.4E+02 0.0049 33.9 11.3 110 2267-2399 34-177 (261)
82 4gcn_A Protein STI-1; structur 36.5 1E+02 0.0034 31.5 8.7 85 2290-2399 12-112 (127)
83 4hat_C Exportin-1; heat repeat 36.4 1.1E+03 0.038 33.1 24.8 121 1013-1135 534-670 (1023)
84 1elw_A TPR1-domain of HOP; HOP 35.6 1E+02 0.0034 29.4 8.3 79 2296-2399 17-101 (118)
85 1hxi_A PEX5, peroxisome target 35.5 79 0.0027 32.0 7.7 80 2295-2399 29-114 (121)
86 3upv_A Heat shock protein STI1 35.3 1.4E+02 0.0047 29.7 9.5 80 2296-2400 17-102 (126)
87 3tpo_A Importin subunit alpha- 34.7 2.4E+02 0.0081 36.4 13.9 162 875-1058 163-332 (529)
88 2vyi_A SGTA protein; chaperone 34.5 1.5E+02 0.0051 28.7 9.5 79 2296-2399 25-109 (131)
89 3sz7_A HSC70 cochaperone (SGT) 34.4 1.3E+02 0.0044 31.6 9.5 88 2287-2399 12-108 (164)
90 2vq2_A PILW, putative fimbrial 34.3 2.5E+02 0.0086 30.1 12.2 57 2343-2399 114-176 (225)
91 3now_A UNC-45 protein, SD10334 34.1 1.1E+03 0.037 32.4 35.0 186 678-904 507-695 (810)
92 1vsy_5 Proteasome activator BL 34.0 59 0.002 45.8 8.3 104 727-849 844-965 (997)
93 1xqr_A HSPBP1 protein; armadil 33.7 6.8E+02 0.023 29.8 18.2 152 727-904 82-239 (296)
94 1na0_A Designed protein CTPR3; 33.6 1.3E+02 0.0044 28.9 8.7 79 2296-2399 22-106 (125)
95 1oyz_A Hypothetical protein YI 31.1 3E+02 0.01 31.7 12.9 85 727-829 55-140 (280)
96 3n71_A Histone lysine methyltr 30.9 1E+02 0.0035 39.8 9.3 89 2294-2399 320-422 (490)
97 3vtx_A MAMA; tetratricopeptide 30.7 1.5E+02 0.0052 31.4 9.4 57 2343-2399 108-170 (184)
98 3q49_B STIP1 homology and U bo 30.6 1.7E+02 0.0059 29.1 9.3 91 2286-2401 9-108 (137)
99 2kck_A TPR repeat; tetratricop 30.5 83 0.0029 29.7 6.6 80 2295-2399 18-106 (112)
100 3ma5_A Tetratricopeptide repea 29.6 77 0.0026 30.8 6.2 58 2343-2400 8-71 (100)
101 2dba_A Smooth muscle cell asso 29.5 1.6E+02 0.0054 29.5 8.9 91 2287-2399 29-128 (148)
102 4i17_A Hypothetical protein; T 27.9 3.5E+02 0.012 29.7 12.2 106 2266-2399 25-146 (228)
103 2kat_A Uncharacterized protein 27.5 1.4E+02 0.0047 29.2 7.8 58 2343-2400 20-83 (115)
104 1xnf_A Lipoprotein NLPI; TPR, 27.5 1.9E+02 0.0066 32.4 10.0 88 2287-2399 44-140 (275)
105 3as5_A MAMA; tetratricopeptide 26.5 2.3E+02 0.0079 29.2 9.8 55 2345-2399 79-139 (186)
106 2ho1_A Type 4 fimbrial biogene 26.4 4.1E+02 0.014 29.3 12.5 53 2345-2397 144-202 (252)
107 3hym_B Cell division cycle pro 25.6 3.1E+02 0.011 31.5 11.7 25 2375-2399 241-265 (330)
108 3oc3_A Helicase MOT1, MOT1; re 24.7 3.4E+02 0.012 35.7 11.7 32 776-807 175-206 (800)
109 3cv0_A Peroxisome targeting si 24.1 3.5E+02 0.012 31.0 11.7 91 2285-2400 171-270 (327)
110 1fch_A Peroxisomal targeting s 23.9 3.5E+02 0.012 31.8 11.9 91 2285-2400 216-315 (368)
111 2pl2_A Hypothetical conserved 23.8 1.8E+02 0.0061 32.4 8.7 57 2343-2399 119-180 (217)
112 3u0r_A Apoptosis inhibitor 5; 23.7 1.3E+03 0.044 29.8 16.8 198 954-1179 53-267 (507)
113 1a17_A Serine/threonine protei 23.7 2.7E+02 0.0093 28.3 9.6 79 2296-2399 26-110 (166)
114 3as5_A MAMA; tetratricopeptide 23.7 4.8E+02 0.016 26.6 11.7 89 2286-2399 76-173 (186)
115 2q7f_A YRRB protein; TPR, prot 22.7 2.5E+02 0.0085 30.8 9.6 22 2377-2398 166-187 (243)
116 1w9c_A CRM1 protein, exportin 22.6 9.2E+02 0.032 29.3 14.8 123 1854-2010 70-200 (321)
117 2y4t_A DNAJ homolog subfamily 22.6 3.4E+02 0.012 33.1 11.7 89 2286-2399 60-172 (450)
118 3nf1_A KLC 1, kinesin light ch 22.6 2.5E+02 0.0087 31.9 10.0 25 2375-2399 283-307 (311)
119 3vtx_A MAMA; tetratricopeptide 22.3 2.7E+02 0.0091 29.4 9.4 89 2286-2399 39-136 (184)
120 3qwp_A SET and MYND domain-con 22.0 2.2E+02 0.0076 36.0 9.9 88 2296-2400 300-401 (429)
121 3fga_B Serine/threonine-protei 21.7 4E+02 0.014 33.5 11.7 110 1779-1905 271-382 (403)
122 2c2l_A CHIP, carboxy terminus 21.5 3E+02 0.01 32.1 10.4 88 2288-2400 6-102 (281)
123 1na3_A Designed protein CTPR2; 21.4 1.6E+02 0.0056 26.8 6.6 56 2344-2399 11-72 (91)
124 4ady_A RPN2, 26S proteasome re 21.1 3.5E+02 0.012 37.8 11.9 35 874-908 647-681 (963)
125 2e2e_A Formate-dependent nitri 21.0 4.1E+02 0.014 27.8 10.5 106 2265-2399 27-144 (177)
126 3hym_B Cell division cycle pro 20.8 5.4E+02 0.018 29.4 12.4 106 2267-2401 110-224 (330)
127 3ro3_A PINS homolog, G-protein 20.7 2.6E+02 0.009 27.9 8.6 58 2344-2401 51-120 (164)
128 2fo7_A Synthetic consensus TPR 20.6 2.3E+02 0.0078 27.2 7.9 78 2297-2399 15-98 (136)
No 1
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.65 E-value=4.8e-05 Score=105.04 Aligned_cols=539 Identities=11% Similarity=0.073 Sum_probs=314.9
Q ss_pred HHHHHHHHhhhcCccchhhhHHhhhhhccccccc----cccCCcchhhHHHHHHhcC---CchhHHhhhhhhhhhhccCC
Q psy5930 436 NLLQGLNSLQSGLHKQQMKDLFVELCLTVPVRLS----SLLPYLPMLMDPLVSALNG---SSTLISQGLRTLELCVDNLQ 508 (2426)
Q Consensus 436 ~lLe~Ln~Ll~~~~~~~~RdL~VELCLTVPvRLS----~LLPyL~~LM~PLV~AL~~---~~eLvsqGLRTLElcVDNLt 508 (2426)
.++..|...+.+..+++.|+..++.+-.+.-.+. .+-||.+.+++.++..|+. ++++-..++++|--|+..+
T Consensus 134 ~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~- 212 (861)
T 2bpt_A 134 ELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFI- 212 (861)
T ss_dssp HHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGC-
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH-
Confidence 3333343444333245556655554444433322 2578999999999999976 4568888999887776432
Q ss_pred cchhhhccc--hHHHHHHHHHHhhcCCCCchhhHHHHHHhhccCCCcccccccCCCCccccccCCCCeEEEEecCCCccc
Q psy5930 509 PDFLYDHIQ--PVRADLMQALWRSLRSPNEQVAHVAYRVLGKFGGGNRKMMIEPQKLDYNIRRSNGPAVVVHFPEHQKTI 586 (2426)
Q Consensus 509 pdfLdp~~~--pV~~elm~ALw~~Lkp~~~~~~~~a~RILGKLGGrNR~~L~~p~~L~~~~~~~~~~~~~~~f~~~~~~~ 586 (2426)
...+. .....++..|...+...+...-..|+++|+++...+-..+.+
T Consensus 213 ----~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~--------------------------- 261 (861)
T 2bpt_A 213 ----KNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKP--------------------------- 261 (861)
T ss_dssp ----HHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHH---------------------------
T ss_pred ----HHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH---------------------------
Confidence 22221 124568888888887667778889999999998654222110
Q ss_pred ccchh-HHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhcccCCCChhHHHhhhcCCCCCCCCCCCCcccccCChhHHHH
Q psy5930 587 NLSVE-KAIDVAITVLKNPAVDMFYRKQGWKVVKGYIISSMNLSDNRSTIQKLFSHPSFGNTESSQGTMYKYADPTIRNT 665 (2426)
Q Consensus 587 ~lpl~-~~i~~A~~~l~~~~~d~~yr~~A~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (2426)
-+. ..+......+. ..|...|..|++++.++.-...... ...- .. +.. .. . +. ...+..
T Consensus 262 --~l~~~l~~~~~~~~~--~~~~~vr~~a~~~l~~l~~~~~~~~-----~~~~-~~---~~~-~~---~--~~-~~~~~~ 321 (861)
T 2bpt_A 262 --YMEQALYALTIATMK--SPNDKVASMTVEFWSTICEEEIDIA-----YELA-QF---PQS-PL---Q--SY-NFALSS 321 (861)
T ss_dssp --HHHHTHHHHHHHHTT--CSSHHHHHHHHHHHHHHHHHHHHHH-----HHHH-HC---TTC-SC---C--CC-CHHHHH
T ss_pred --HHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHHHHhhh-----hhhh-hc---cCC-ch---h--hH-HHHHHH
Confidence 012 34444445554 3567789999999987544321000 0000 00 000 00 0 00 111333
Q ss_pred HHHHHHHHHHHhcc---------hhHHHhHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccccCCCChHHHHHHHHHhhc
Q psy5930 666 HQNALTGIFMVYLI---------KELRKDSLLYTVLVVRHYTLVAITQQTGPFPLYGKSALLEGTMDPLVLIDAIAVILG 736 (2426)
Q Consensus 666 ~~~ll~~~f~a~~~---------~~l~~~a~~f~~~v~rhf~l~~i~~~~~~~~~~~~~~~~~~~ld~~vl~DAi~~~l~ 736 (2426)
+..++..++..... ...+..|...+..++.++- .. + -..+++.+...+.
T Consensus 322 ~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~-----~~----------------~-~~~l~~~l~~~l~ 379 (861)
T 2bpt_A 322 IKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG-----NH----------------I-LEPVLEFVEQNIT 379 (861)
T ss_dssp HHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG-----GG----------------G-HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc-----Hh----------------H-HHHHHHHHHHHcC
Confidence 44455554433321 2466666667766665531 00 0 1237788888899
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHhhCCchhhcchhhHHHHHHHHHHhccCchhhhhHhHHHHHHHHHHhchHHHH-HHHH
Q psy5930 737 HEDKELCKPGYIALKCIMETATCITGSIENACNLPLMEYLAERMCNLCYERAWYAKLGGCYAIKFFYNTMAIKWV-YSHM 815 (2426)
Q Consensus 737 ~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~p~~~~L~~rf~~~Cy~~~w~~K~gG~~gi~~l~~~~~~~wl-~~~~ 815 (2426)
+.+...+++|..++..+.+ |..... -.+.+..++..+++.+.++.+..+.+++.++.-+.+.++.... ..+.
T Consensus 380 ~~~~~~r~~a~~~l~~i~~------~~~~~~-~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 452 (861)
T 2bpt_A 380 ADNWRNREAAVMAFGSIMD------GPDKVQ-RTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHL 452 (861)
T ss_dssp CSSHHHHHHHHHHHHHTSS------SSCHHH-HHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTH
T ss_pred CCChhHHHHHHHHHHHHHc------CCCHHH-HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHH
Confidence 9888999999888876643 221111 1366778899999999999999999999988888876643210 2345
Q ss_pred HHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhhhhhhhhHHHHHHHHhhhcCCC--ChHHHHH
Q psy5930 816 FVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAETLTVQSKALSEVTNELTRNITLP--NDLLREQ 893 (2426)
Q Consensus 816 ~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~eL~s~--n~~VR~~ 893 (2426)
..++.+++..++|- ..+...|-.++..+.+.|... ..+ .. ...+..++..++.-+.++ +..||.+
T Consensus 453 ~~~l~~l~~~l~~~-----~~v~~~a~~al~~l~~~~~~~-~~~------~l-~~~~~~il~~L~~~l~~~d~~~~vr~~ 519 (861)
T 2bpt_A 453 PGVVQACLIGLQDH-----PKVATNCSWTIINLVEQLAEA-TPS------PI-YNFYPALVDGLIGAANRIDNEFNARAS 519 (861)
T ss_dssp HHHHHHHHHHHTSC-----HHHHHHHHHHHHHHHHHHSSS-SSC------GG-GGGHHHHHHHHHHHHTCSCCGGGHHHH
T ss_pred HHHHHHHHHHhccC-----hHHHHHHHHHHHHHHHhcccc-cch------hh-HHHHHHHHHHHHHHHhCcCcchHHHHH
Confidence 67788888888773 345666777777777776420 001 11 234666777777777643 4789999
Q ss_pred HHHHHHHHHHHhCCchhhccccchhhhhccCCCCccccccC--------------chhhhHhhhhhhhhhccc-CCCccc
Q psy5930 894 SMYLLQVFAETQGKSVVQVMEPHKDVLADIIPPKKLLIRNH--------------SANAQIGLMEGNTFCQSL-TPRLFT 958 (2426)
Q Consensus 894 aq~~L~~lae~t~~~v~ell~p~k~~Ll~~I~~Kpl~lRal--------------pf~~QIG~idaitfcl~L-~p~~l~ 958 (2426)
+-+++..+++..+..+. |+-+.++.+++.. + .+.+ .-..|.+.++++..+..- .+.+.+
T Consensus 520 a~~al~~l~~~~~~~~~----~~~~~l~~~l~~~-l-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 593 (861)
T 2bpt_A 520 AFSALTTMVEYATDTVA----ETSASISTFVMDK-L-GQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEP 593 (861)
T ss_dssp HHHHHHHHHHHCCGGGH----HHHHHHHHHHHHH-H-HHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGG
T ss_pred HHHHHHHHHHHcchhhH----HHHHHHHHHHHHH-H-HHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 99999999998886432 2222222222211 0 0111 123456777777665443 332222
Q ss_pred cCcchhhHHHHHHHHHHhhccCchhhhcCCCCCCccccchHHHHHHHHHHhh---hc--CCchhhHHHHHHHHhhcCCCH
Q psy5930 959 TDMSIHEHSSFFQEITNICESSDQALMKLPCYKPISSLVPLRKAAMRALASW---HY--VPNCSQKIFNTLFAALERPNP 1033 (2426)
Q Consensus 959 ~~~~~~el~rll~E~l~LadadD~~l~k~~~~k~~~~lv~LRv~ci~lL~~~---~~--~~~~~~rIi~vfFKsL~s~s~ 1033 (2426)
+- +++...+.+++. ..+. . .+|..++.+++.. .. +..+-.+|+..+++.|..+++
T Consensus 594 ~~---~~l~~~l~~~l~---~~~~-----------~---~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~ 653 (861)
T 2bpt_A 594 VA---DMLMGLFFRLLE---KKDS-----------A---FIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDS 653 (861)
T ss_dssp GH---HHHHHHHHHHHH---STTG-----------G---GTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTS
T ss_pred HH---HHHHHHHHHHHc---cCCC-----------C---cHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccH
Confidence 22 333333333332 2111 0 3566666655432 22 112345889999999988899
Q ss_pred HHHHHHHHHHHHHHccCCCC-hhhHHHhhHHHHhhhcCC---CCCCHhHHHHHHHhhhhCCCccc
Q psy5930 1034 ELQEAAFQAMKTFVNGSPID-LKSVYEVMKPLLLTLGDY---RNLNLVTARKLSYIVQPFPSSFS 1094 (2426)
Q Consensus 1034 ei~~aA~~gLk~vL~~~~~~-~e~L~q~LRPiL~nLsD~---k~Ltv~gLegLarLLeLL~nyFk 1094 (2426)
++..+|..++..+...-.-. ...+..-+.+++.++.|. .......+..|+.+.+-.+.-|.
T Consensus 654 ~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~ 718 (861)
T 2bpt_A 654 PVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFI 718 (861)
T ss_dssp HHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGH
T ss_pred HHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHH
Confidence 99999999998877543211 222333366677777764 55667788888888887655553
No 2
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.40 E-value=0.0012 Score=91.68 Aligned_cols=593 Identities=11% Similarity=0.059 Sum_probs=320.5
Q ss_pred hhhhccccccc--cccCCcchhhHHHHHHhcC-CchhHHhhhhhhhhhhccCCcchhhhccchHHHHHHHHHHhhcCCCC
Q psy5930 459 ELCLTVPVRLS--SLLPYLPMLMDPLVSALNG-SSTLISQGLRTLELCVDNLQPDFLYDHIQPVRADLMQALWRSLRSPN 535 (2426)
Q Consensus 459 ELCLTVPvRLS--~LLPyL~~LM~PLV~AL~~-~~eLvsqGLRTLElcVDNLtpdfLdp~~~pV~~elm~ALw~~Lkp~~ 535 (2426)
.+|-..|-.+. .+-.+++.++++|+..|+. ++++-..++++|--+++..+. .+.+.+++++.+|++.+...+
T Consensus 154 ~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~-----~~~~~~~~~l~~l~~~~~d~~ 228 (852)
T 4fdd_A 154 KICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ-----ALMLHIDSFIENLFALAGDEE 228 (852)
T ss_dssp HHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH-----HHHTSHHHHHHHHHHHHTCCC
T ss_pred HHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH-----HHHHHHHHHHHHHHHHcCCCC
Confidence 45555554432 3446688889999988875 556778889988777765443 245667788889998888767
Q ss_pred chhhHHHHHHhhccCCCcccccccCCCCccccccCCCCeEEEEecCCCcccccchhHHHHHHHHHHcCCCCcHHHHHHHH
Q psy5930 536 EQVAHVAYRVLGKFGGGNRKMMIEPQKLDYNIRRSNGPAVVVHFPEHQKTINLSVEKAIDVAITVLKNPAVDMFYRKQGW 615 (2426)
Q Consensus 536 ~~~~~~a~RILGKLGGrNR~~L~~p~~L~~~~~~~~~~~~~~~f~~~~~~~~lpl~~~i~~A~~~l~~~~~d~~yr~~A~ 615 (2426)
...-..|++.||++.+..-.++ .--+...++...+.+.+ .|...|.+|.
T Consensus 229 ~~vr~~a~~~L~~l~~~~~~~~-----------------------------~~~l~~l~~~l~~~~~~--~~~~vr~~a~ 277 (852)
T 4fdd_A 229 PEVRKNVCRALVMLLEVRMDRL-----------------------------LPHMHNIVEYMLQRTQD--QDENVALEAC 277 (852)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHH-----------------------------GGGHHHHHHHHHHHHTC--SSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHHH-----------------------------HHHHHHHHHHHHHHccC--CcHHHHHHHH
Confidence 7788899999999876321111 11234566777777754 5677899999
Q ss_pred HHHHHHHHhcc--c-CCCCh-hHHHhhhcCCCCC---------CCCCCCCcccccCChhHHHHHHHHHHHHHHHhcchhH
Q psy5930 616 KVVKGYIISSM--N-LSDNR-STIQKLFSHPSFG---------NTESSQGTMYKYADPTIRNTHQNALTGIFMVYLIKEL 682 (2426)
Q Consensus 616 ~~l~~~l~~~l--~-~~~~~-~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ll~~~f~a~~~~~l 682 (2426)
+++.++.-... + +.... ..+..++...... +.+..............+..-..++..+..... ++.
T Consensus 278 e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~-~~~ 356 (852)
T 4fdd_A 278 EFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR-DEL 356 (852)
T ss_dssp HHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG-GGG
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc-HHH
Confidence 99876432110 0 01111 1121221111000 000000000000011123333334433332222 233
Q ss_pred HHhHHHHHHH-------HHHHHHHHHHHhhcCCCCCCcccccccCCCCh--HHHHHHHHHhhcCCChhhhhHHHHHHHHH
Q psy5930 683 RKDSLLYTVL-------VVRHYTLVAITQQTGPFPLYGKSALLEGTMDP--LVLIDAIAVILGHEDKELCKPGYIALKCI 753 (2426)
Q Consensus 683 ~~~a~~f~~~-------v~rhf~l~~i~~~~~~~~~~~~~~~~~~~ld~--~vl~DAi~~~l~~~~~~~~~~~~~~l~~~ 753 (2426)
.....+++.. -+|+-++..++.-+.... ..+.+ .-++..++..|.++++.++.++..++..+
T Consensus 357 ~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~---------~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l 427 (852)
T 4fdd_A 357 LPHILPLLKELLFHHEWVVKESGILVLGAIAEGCM---------QGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRY 427 (852)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTH---------HHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcch---------HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 3334444433 345666666664332110 01112 23789999999999999999999999988
Q ss_pred HHHHHHhhCCchhhcchhhHHHHHHHHHHhccCchhhhhHhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhcCCCccc
Q psy5930 754 METATCITGSIENACNLPLMEYLAERMCNLCYERAWYAKLGGCYAIKFFYNTMAIKWVYSHMFVFVKALLFVMMDLTGEV 833 (2426)
Q Consensus 754 ~~~~~~i~~~~~~~~~~p~~~~L~~rf~~~Cy~~~w~~K~gG~~gi~~l~~~~~~~wl~~~~~~ivraLlfvlkD~p~e~ 833 (2426)
.+....- ...+++..++..++++.-+..+..+..+|.++..+++..+.. +..+..+++..|+..+++..
T Consensus 428 ~~~~~~~-------~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~-l~~~l~~ll~~L~~~l~~~~--- 496 (852)
T 4fdd_A 428 AHWVVSQ-------PPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTE-LVPYLAYILDTLVFAFSKYQ--- 496 (852)
T ss_dssp HHHHHHS-------CTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG-GGGGHHHHHHHHHHHHHHCC---
T ss_pred HHHhccc-------hHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHh-hHhHHHHHHHHHHHHHHHhC---
Confidence 7643211 123566777777887777889999999999999999888654 55677889999988887542
Q ss_pred chhHHHHHHHHHHHHHHHHcCCCCCCCchhhhhhhhhhHHHHHHHHh---hhcCCCChHHHHHHHHHHHHHHHHhCCchh
Q psy5930 834 SSGAIDEARRNLKQLIVLCATPIKEPVDAETLTVQSKALSEVTNELT---RNITLPNDLLREQSMYLLQVFAETQGKSVV 910 (2426)
Q Consensus 834 ~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv---~eL~s~n~~VR~~aq~~L~~lae~t~~~v~ 910 (2426)
......+.+++..+...+...... ...+..++..++ ..+.+..+.+| .+-+|+..++...|....
T Consensus 497 -~~~~~~~~~ai~~l~~~~~~~~~~----------~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~ 564 (852)
T 4fdd_A 497 -HKNLLILYDAIGTLADSVGHHLNK----------PEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFL 564 (852)
T ss_dssp -HHHHHHHHHHHHHHHHHHGGGGCC----------HHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGH
T ss_pred -hHHHHHHHHHHHHHHHHhhhhhcc----------HHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHH
Confidence 223334556666666544322111 112334444444 45566666676 678999999988875433
Q ss_pred hccccchhhhhc---------------c-CCCCccccccCchhhhHhhhhhhhhhc-ccCCCcccc--CcchhhHHHHHH
Q psy5930 911 QVMEPHKDVLAD---------------I-IPPKKLLIRNHSANAQIGLMEGNTFCQ-SLTPRLFTT--DMSIHEHSSFFQ 971 (2426)
Q Consensus 911 ell~p~k~~Ll~---------------~-I~~Kpl~lRalpf~~QIG~idaitfcl-~L~p~~l~~--~~~~~el~rll~ 971 (2426)
.-+.+.-.+++. | .+..|- + ..|+..+|++.-+. .+.+.+..+ + +.+..++.
T Consensus 565 ~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d--~----~~~~~~l~~l~~l~~~l~~~~~~~~~~---~~~~~~l~ 635 (852)
T 4fdd_A 565 PYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPD--K----DFMIVALDLLSGLAEGLGGNIEQLVAR---SNILTLMY 635 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCC--T----HHHHHHHHHHHHHHHHHGGGGHHHHHT---CCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCc--c----hHHHHHHHHHHHHHHHHhHhHHHHhcC---CcHHHHHH
Confidence 222221111110 0 111111 1 12333344433322 122222111 1 11111221
Q ss_pred HHHHhhccCchhhhcCCCCCCccccchHHHHHHHHHHhhh-cCC-ch---hhHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q psy5930 972 EITNICESSDQALMKLPCYKPISSLVPLRKAAMRALASWH-YVP-NC---SQKIFNTLFAALERPNPELQEAAFQAMKTF 1046 (2426)
Q Consensus 972 E~l~LadadD~~l~k~~~~k~~~~lv~LRv~ci~lL~~~~-~~~-~~---~~rIi~vfFKsL~s~s~ei~~aA~~gLk~v 1046 (2426)
+++ +.+ --..|.+|..++...- ..+ ++ -..++..+.+.|....+++...|-.++.+.
T Consensus 636 ~~l---~~~---------------~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i 697 (852)
T 4fdd_A 636 QCM---QDK---------------MPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEI 697 (852)
T ss_dssp HHT---TCS---------------SHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHH
T ss_pred HHh---CCC---------------ChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHH
Confidence 111 110 1247888888877533 233 22 346888889999888889999999998886
Q ss_pred HccCCCC-hhhHHHhhHHHHhhhcC---CCCCCHhHHHHHHHhhhhCCCcccHHHHHHHHHHHHHhhhhhhhhhcCCCCC
Q psy5930 1047 VNGSPID-LKSVYEVMKPLLLTLGD---YRNLNLVTARKLSYIVQPFPSSFSEKLCEQLLVNLKNLFENIVAQKENPPKN 1122 (2426)
Q Consensus 1047 L~~~~~~-~e~L~q~LRPiL~nLsD---~k~Ltv~gLegLarLLeLL~nyFkveiG~KLLdHLk~~~e~~~~~~~~~~~~ 1122 (2426)
.....-. ..-+..-+.+++..|.+ ++.+.-+....++||..-.++.++ .-|=+-+..|+..- . ..++
T Consensus 698 ~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~----~~l~~~~~~~~~~l--~---~~~d 768 (852)
T 4fdd_A 698 SIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVA----PMLQQFIRPWCTSL--R---NIRD 768 (852)
T ss_dssp HHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHG----GGHHHHHHHHHHHH--H---TSCS
T ss_pred HHHhhHhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhC----ccHHHHHHHHHHHh--c---cccc
Confidence 5432111 11122224444444544 333444455566666666555443 22233345555521 1 1222
Q ss_pred C-cchhHHHHHHHhhccCchhHHhhHHHHHHHHHH
Q psy5930 1123 S-ETEKIIVVIIGIFKESPAAKAQFIEPLISLILE 1156 (2426)
Q Consensus 1123 ~-~~~kii~aIinIFHLLP~aa~~Fle~Lv~~Vl~ 1156 (2426)
. +......++.++.+.=|++....+-.++..|..
T Consensus 769 ~~e~~~a~~~l~~li~~~p~~~~~~~~~~~~~~~~ 803 (852)
T 4fdd_A 769 NEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVAS 803 (852)
T ss_dssp SHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHh
Confidence 3 334556667777777787655555555555544
No 3
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.38 E-value=0.00029 Score=97.44 Aligned_cols=538 Identities=12% Similarity=0.066 Sum_probs=303.6
Q ss_pred cchhhhHHhhhhhcccccc--ccccCCcchhhHHHHHHhcCC---chhHHhhhhhhhhhhccCCcchhhhccc--hHHHH
Q psy5930 450 KQQMKDLFVELCLTVPVRL--SSLLPYLPMLMDPLVSALNGS---STLISQGLRTLELCVDNLQPDFLYDHIQ--PVRAD 522 (2426)
Q Consensus 450 ~~~~RdL~VELCLTVPvRL--S~LLPyL~~LM~PLV~AL~~~---~eLvsqGLRTLElcVDNLtpdfLdp~~~--pV~~e 522 (2426)
++..|...++.+-.+.-.+ ..+-+|++.+++.++..|+.. +++-..++++|--|+..+. +.+. ..+..
T Consensus 143 ~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~-----~~~~~~~~~~~ 217 (876)
T 1qgr_A 143 TEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK-----ANFDKESERHF 217 (876)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCH-----HHHTSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH-----HHHHhHHHHHH
Confidence 4556665555444443322 125689999999999999764 4677788888887775433 2222 22345
Q ss_pred HHHHHHhhcCCCCchhhHHHHHHhhccCCCcccccccCCCCccccccCCCCeEEEEecCCCcccccchh-HHHHHHHHHH
Q psy5930 523 LMQALWRSLRSPNEQVAHVAYRVLGKFGGGNRKMMIEPQKLDYNIRRSNGPAVVVHFPEHQKTINLSVE-KAIDVAITVL 601 (2426)
Q Consensus 523 lm~ALw~~Lkp~~~~~~~~a~RILGKLGGrNR~~L~~p~~L~~~~~~~~~~~~~~~f~~~~~~~~lpl~-~~i~~A~~~l 601 (2426)
+++.+...+...+...-..|+++|+.+.++..+++.+ .+. ..++...+.+
T Consensus 218 il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~-----------------------------~~~~~l~~~~~~~~ 268 (876)
T 1qgr_A 218 IMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMET-----------------------------YMGPALFAITIEAM 268 (876)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHH-----------------------------HHTTTHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHH-----------------------------HHHHHHHHHHHHHh
Confidence 7888888887656667788999999998765544321 011 2345555555
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHhcccCCCChhHHHhhhcCCCCCCCCCCCCcccccCChhHHHHHHHHHHHHHHHhc---
Q psy5930 602 KNPAVDMFYRKQGWKVVKGYIISSMNLSDNRSTIQKLFSHPSFGNTESSQGTMYKYADPTIRNTHQNALTGIFMVYL--- 678 (2426)
Q Consensus 602 ~~~~~d~~yr~~A~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~f~a~~--- 678 (2426)
. ..+...|..|++++..+.-.......+. .....+. ..... .+. ...+..+..++..++-...
T Consensus 269 ~--~~~~~v~~~al~~l~~l~~~~~~~~~~~---~~~~~~~---~~~~~-----~~~-~~~~~~~~~ll~~ll~~l~~~~ 334 (876)
T 1qgr_A 269 K--SDIDEVALQGIEFWSNVCDEEMDLAIEA---SEAAEQG---RPPEH-----TSK-FYAKGALQYLVPILTQTLTKQD 334 (876)
T ss_dssp T--CSSHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHS---SCCSS-----CCC-CHHHHHHHHHHHHHHHHTTCCC
T ss_pred c--CCchHHHHHHHHHHHHHHHHHHhHhhhh---ccccccC---CCccc-----hhH-HHHHHHHHHHhHHHHHHhhccc
Confidence 3 3566789999999987643321000000 0000000 00000 000 1112223334443333221
Q ss_pred ------chhHHHhHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccccCCCChHHHHHHHHHhhcCCChhhhhHHHHHHHH
Q psy5930 679 ------IKELRKDSLLYTVLVVRHYTLVAITQQTGPFPLYGKSALLEGTMDPLVLIDAIAVILGHEDKELCKPGYIALKC 752 (2426)
Q Consensus 679 ------~~~l~~~a~~f~~~v~rhf~l~~i~~~~~~~~~~~~~~~~~~~ld~~vl~DAi~~~l~~~~~~~~~~~~~~l~~ 752 (2426)
....|..|...+..++.++. . . + -..++..+...+.+.+..++++|..++..
T Consensus 335 ~d~~~~~~~~r~~a~~~l~~l~~~~~-----~---------------~-~-~~~~l~~l~~~l~~~~~~~r~~a~~~l~~ 392 (876)
T 1qgr_A 335 ENDDDDDWNPCKAAGVCLMLLATCCE-----D---------------D-I-VPHVLPFIKEHIKNPDWRYRDAAVMAFGC 392 (876)
T ss_dssp SSCCTTCCCHHHHHHHHHHHHHHHHG-----G---------------G-G-HHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHHHHHHHHCc-----H---------------h-h-HHHHHHHHHHHccCCChHHHHHHHHHHHH
Confidence 12356666666666555431 0 0 1 12367788888999999999999988876
Q ss_pred HHHHHHHhhCCchhhcchhhHHHHHHHHHHhccCchhhhhHhHHHHHHHHHHhchHHH-HHHHHHHHHHHHHHHhcCCCc
Q psy5930 753 IMETATCITGSIENACNLPLMEYLAERMCNLCYERAWYAKLGGCYAIKFFYNTMAIKW-VYSHMFVFVKALLFVMMDLTG 831 (2426)
Q Consensus 753 ~~~~~~~i~~~~~~~~~~p~~~~L~~rf~~~Cy~~~w~~K~gG~~gi~~l~~~~~~~w-l~~~~~~ivraLlfvlkD~p~ 831 (2426)
+.+ |..... -.+++..+++.+..+.-++.+..+..+|.++.-+.+.++... ...+...++.+|+..+.|-
T Consensus 393 i~~------~~~~~~-~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-- 463 (876)
T 1qgr_A 393 ILE------GPEPSQ-LKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-- 463 (876)
T ss_dssp TSS------SSCHHH-HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC--
T ss_pred HHc------CCCHHH-HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC--
Confidence 643 221111 125667788888888889999999999999999998875432 2345668889999999882
Q ss_pred ccchhHHHHHHHHHHHHHHHHcCCC-CCCCc-hhhhhhhhhhHHHHHHHHhhhcCCC---ChHHHHHHHHHHHHHHHHhC
Q psy5930 832 EVSSGAIDEARRNLKQLIVLCATPI-KEPVD-AETLTVQSKALSEVTNELTRNITLP---NDLLREQSMYLLQVFAETQG 906 (2426)
Q Consensus 832 e~~~~~~~~a~~~l~~ll~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~lv~eL~s~---n~~VR~~aq~~L~~lae~t~ 906 (2426)
..+...|-.++..+.+.+.... ..+.. ....+.-...+..++..|+.-+..+ +..+|..+-+++..++...|
T Consensus 464 ---~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~ 540 (876)
T 1qgr_A 464 ---PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSA 540 (876)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCC
T ss_pred ---HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCc
Confidence 3456677778888887765110 00000 0000001123566677776666554 46899999999999999888
Q ss_pred CchhhccccchhhhhccCCCCcccccc-C-------c-------hhhhHhhhhhhhhhcc-cC-CCccccCcchhhHHHH
Q psy5930 907 KSVVQVMEPHKDVLADIIPPKKLLIRN-H-------S-------ANAQIGLMEGNTFCQS-LT-PRLFTTDMSIHEHSSF 969 (2426)
Q Consensus 907 ~~v~ell~p~k~~Ll~~I~~Kpl~lRa-l-------p-------f~~QIG~idaitfcl~-L~-p~~l~~~~~~~el~rl 969 (2426)
..... +-+.++.++..+ + .. + + ...|...+.++..+.. +. ..+.++ +-.+
T Consensus 541 ~~~~~----~~~~l~~~l~~~-l--~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~------~~~l 607 (876)
T 1qgr_A 541 KDCYP----AVQKTTLVIMER-L--QQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQI------SDVV 607 (876)
T ss_dssp STTHH----HHHHHHHHHHHH-H--HHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTT------HHHH
T ss_pred hhhHH----HHHHHHHHHHHH-H--HHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHH------HHHH
Confidence 64333 222222221100 0 00 0 0 1123333444444332 21 111111 1123
Q ss_pred HHHHHHhhccCchhhhcCCCCCCccccchHHHHHHHHHHhhh-----cCCchhhHHHHHHHHhhcCC-CHHHHHHHHHHH
Q psy5930 970 FQEITNICESSDQALMKLPCYKPISSLVPLRKAAMRALASWH-----YVPNCSQKIFNTLFAALERP-NPELQEAAFQAM 1043 (2426)
Q Consensus 970 l~E~l~LadadD~~l~k~~~~k~~~~lv~LRv~ci~lL~~~~-----~~~~~~~rIi~vfFKsL~s~-s~ei~~aA~~gL 1043 (2426)
+..++.+...... + ...|..+++++.... .+..+...++..+++.|... +++|..+|..++
T Consensus 608 ~~~l~~~l~~~~~--------~-----~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l 674 (876)
T 1qgr_A 608 MASLLRMFQSTAG--------S-----GGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLV 674 (876)
T ss_dssp HHHHHHHC-------------C-----CHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhccC--------C-----CCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHH
Confidence 3333333322210 0 134666777665322 12334458889999999887 899999999999
Q ss_pred HHHHccCCC-ChhhHHHhhHHHHhhhcC---CCCCCHhHHHHHHHhhhhCCCcccH
Q psy5930 1044 KTFVNGSPI-DLKSVYEVMKPLLLTLGD---YRNLNLVTARKLSYIVQPFPSSFSE 1095 (2426)
Q Consensus 1044 k~vL~~~~~-~~e~L~q~LRPiL~nLsD---~k~Ltv~gLegLarLLeLL~nyFkv 1095 (2426)
.......+. ....+.+-+.+++.+|++ ++.+-...+..++.+.+-++.-|..
T Consensus 675 ~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~ 730 (876)
T 1qgr_A 675 GDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKK 730 (876)
T ss_dssp HHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGG
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHH
Confidence 988754221 112233336667777765 4567778888888887765555543
No 4
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.37 E-value=0.002 Score=88.99 Aligned_cols=573 Identities=12% Similarity=0.105 Sum_probs=312.2
Q ss_pred CcchhhHHHHHHhcC--CchhHHhhhhhhhhhhccCCcchhhhccchHHHHHHHHHHhhcCCC--CchhhHHHHHHhhcc
Q psy5930 474 YLPMLMDPLVSALNG--SSTLISQGLRTLELCVDNLQPDFLYDHIQPVRADLMQALWRSLRSP--NEQVAHVAYRVLGKF 549 (2426)
Q Consensus 474 yL~~LM~PLV~AL~~--~~eLvsqGLRTLElcVDNLtpdfLdp~~~pV~~elm~ALw~~Lkp~--~~~~~~~a~RILGKL 549 (2426)
..|-|++-|+..+++ +++....|+++|-.+.+.+.++. . ++.+....++.++...|... +...-..|++.||.+
T Consensus 131 ~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~-~-~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~ 208 (861)
T 2bpt_A 131 AWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQS-Q-ALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADS 208 (861)
T ss_dssp CCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTS-S-TTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhh-h-HHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH
Confidence 567888999999976 45688889999988888777663 0 24566777777777777744 455788999999986
Q ss_pred CCCcccccccCCCCccccccCCCCeEEEEecCCCcccccchhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhcccCC
Q psy5930 550 GGGNRKMMIEPQKLDYNIRRSNGPAVVVHFPEHQKTINLSVEKAIDVAITVLKNPAVDMFYRKQGWKVVKGYIISSMNLS 629 (2426)
Q Consensus 550 GGrNR~~L~~p~~L~~~~~~~~~~~~~~~f~~~~~~~~lpl~~~i~~A~~~l~~~~~d~~yr~~A~~~l~~~l~~~l~~~ 629 (2426)
-+. +.+ +.+ .... .+..+..-.+.+. ..+...|+.|++.+..+.-..-
T Consensus 209 ~~~----~~~--------~~~-----------~~~~----~~~ll~~l~~~~~--~~~~~~r~~a~~~l~~l~~~~~--- 256 (861)
T 2bpt_A 209 LIF----IKN--------NME-----------REGE----RNYLMQVVCEATQ--AEDIEVQAAAFGCLCKIMSKYY--- 256 (861)
T ss_dssp GGG----CHH--------HHT-----------SHHH----HHHHHHHHHHHHT--CSCHHHHHHHHHHHHHHHHHHG---
T ss_pred HHH----HHH--------Hcc-----------ChhH----HHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHH---
Confidence 421 100 000 0000 0112333333443 4567789999888876543211
Q ss_pred CChhHHHhhhcCCCCCCCCCCCCcccccCChhHH-HHHHHHHHHHHHHhcchhHHHhHHHHHHHHHHHHHHHHHHhhcCC
Q psy5930 630 DNRSTIQKLFSHPSFGNTESSQGTMYKYADPTIR-NTHQNALTGIFMVYLIKELRKDSLLYTVLVVRHYTLVAITQQTGP 708 (2426)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ll~~~f~a~~~~~l~~~a~~f~~~v~rhf~l~~i~~~~~~ 708 (2426)
+. +. .... .++.-++.+ .....++.+..|.+|+..++++..-......-..
T Consensus 257 ~~---~~-----------------------~~l~~~l~~~~~~~--~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 308 (861)
T 2bpt_A 257 TF---MK-----------------------PYMEQALYALTIAT--MKSPNDKVASMTVEFWSTICEEEIDIAYELAQFP 308 (861)
T ss_dssp GG---CH-----------------------HHHHHTHHHHHHHH--TTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HH---HH-----------------------HHHHHHHHHHHHHH--HcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Confidence 00 00 0001 222212211 1234567888899999888887543222111000
Q ss_pred CCCCcccccccCCCCh--HHHHHHHHHhhcCC-------ChhhhhHHHHHHHHHHHHHHHhhCCchhhcchhhHHHHHHH
Q psy5930 709 FPLYGKSALLEGTMDP--LVLIDAIAVILGHE-------DKELCKPGYIALKCIMETATCITGSIENACNLPLMEYLAER 779 (2426)
Q Consensus 709 ~~~~~~~~~~~~~ld~--~vl~DAi~~~l~~~-------~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~p~~~~L~~r 779 (2426)
. .. ......+.+ ..++..++..|... +..++..+..++..+... +|. ..+..+++.
T Consensus 309 ~--~~--~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~----~~~-------~~~~~l~~~ 373 (861)
T 2bpt_A 309 Q--SP--LQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQN----CGN-------HILEPVLEF 373 (861)
T ss_dssp T--CS--CCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHH----HGG-------GGHHHHHHH
T ss_pred C--Cc--hhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHH----ccH-------hHHHHHHHH
Confidence 0 00 000000111 23667777777753 345777777777766553 231 234456666
Q ss_pred HHHhccCchhhhhHhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCCCC
Q psy5930 780 MCNLCYERAWYAKLGGCYAIKFFYNTMAIKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIKEP 859 (2426)
Q Consensus 780 f~~~Cy~~~w~~K~gG~~gi~~l~~~~~~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~ 859 (2426)
+...+.+..|..|.+++.++..+.+..+..-+..+...++..|+..++|- ...++..|-.++-.+...+......
T Consensus 374 l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~----~~~vr~~a~~~l~~l~~~~~~~~~~- 448 (861)
T 2bpt_A 374 VEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQ----SLQVKETTAWCIGRIADSVAESIDP- 448 (861)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCS----CHHHHHHHHHHHHHHHHHHGGGSCT-
T ss_pred HHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCC----cHHHHHHHHHHHHHHHHHhhhhcCC-
Confidence 66667788999999999999999877655556677778899999888874 3445556666666666655432111
Q ss_pred CchhhhhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhCCchhhccccchhhhhccCCCCccccc--cCchh
Q psy5930 860 VDAETLTVQSKALSEVTNELTRNITLPNDLLREQSMYLLQVFAETQGKSVVQVMEPHKDVLADIIPPKKLLIR--NHSAN 937 (2426)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~~lv~eL~s~n~~VR~~aq~~L~~lae~t~~~v~ell~p~k~~Ll~~I~~Kpl~lR--alpf~ 937 (2426)
...+..++..++.-+.++ +.||..|-.+|..+++..+....+.+.||-..++..+..- +. .....
T Consensus 449 ---------~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~---l~~~d~~~~ 515 (861)
T 2bpt_A 449 ---------QQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGA---ANRIDNEFN 515 (861)
T ss_dssp ---------TTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHH---HTCSCCGGG
T ss_pred ---------HHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH---HhCcCcchH
Confidence 123666677777777665 8999999999999998776212244556655544322110 01 11145
Q ss_pred hhHhhhhhhhhhcccCCCccccCcchhhHHHHHHHHHHhh-ccCchhhhcCCCCCCccccchHHHHHHHHHHhhh-----
Q psy5930 938 AQIGLMEGNTFCQSLTPRLFTTDMSIHEHSSFFQEITNIC-ESSDQALMKLPCYKPISSLVPLRKAAMRALASWH----- 1011 (2426)
Q Consensus 938 ~QIG~idaitfcl~L~p~~l~~~~~~~el~rll~E~l~La-dadD~~l~k~~~~k~~~~lv~LRv~ci~lL~~~~----- 1011 (2426)
.+.+.++|+..+....+.- +..-.+++...+.+.+.-. ..+.. +.+. ........+|..++..|....
T Consensus 516 vr~~a~~al~~l~~~~~~~--~~~~~~~l~~~l~~~l~~~~~~~~~-i~~~---~~~~~~~~~~~~~~~~l~~l~~~~~~ 589 (861)
T 2bpt_A 516 ARASAFSALTTMVEYATDT--VAETSASISTFVMDKLGQTMSVDEN-QLTL---EDAQSLQELQSNILTVLAAVIRKSPS 589 (861)
T ss_dssp HHHHHHHHHHHHHHHCCGG--GHHHHHHHHHHHHHHHHHHTTSCGG-GCCH---HHHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHHHcchh--hHHHHHHHHHHHHHHHHHHHhhhcc-cCCh---hhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 7888888888887765531 1111122222222333211 00000 0000 000122346677777665332
Q ss_pred cCCchhhHHHHHHHHhhcCCCH-HHHHHHHHHHHHHHccCCCCh-hhHHHhhHHHHhhhcC-CCCCCHhHHHHHHHhhhh
Q psy5930 1012 YVPNCSQKIFNTLFAALERPNP-ELQEAAFQAMKTFVNGSPIDL-KSVYEVMKPLLLTLGD-YRNLNLVTARKLSYIVQP 1088 (2426)
Q Consensus 1012 ~~~~~~~rIi~vfFKsL~s~s~-ei~~aA~~gLk~vL~~~~~~~-e~L~q~LRPiL~nLsD-~k~Ltv~gLegLarLLeL 1088 (2426)
.+..+...++..+.+.+...+. .+.+.|..++..+....+-.- ..+-+-+..++..|.+ ..+.....+..++.+.+-
T Consensus 590 ~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~ 669 (861)
T 2bpt_A 590 SVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNS 669 (861)
T ss_dssp GTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 1223556888888999988877 899999988887765422111 1222224444444443 222444556666666665
Q ss_pred CCCcccHHHHHHHHHHHHHhhhhhhhhhcCCCCCCcch--hHHHHHHHhhccCchhHHhhHHHHHHHHHH
Q psy5930 1089 FPSSFSEKLCEQLLVNLKNLFENIVAQKENPPKNSETE--KIIVVIIGIFKESPAAKAQFIEPLISLILE 1156 (2426)
Q Consensus 1089 L~nyFkveiG~KLLdHLk~~~e~~~~~~~~~~~~~~~~--kii~aIinIFHLLP~aa~~Fle~Lv~~Vl~ 1156 (2426)
+..-|.. ....++..+-.-++ . . ....++ ..+.++-+|.+-.+..-..|++.++..++.
T Consensus 670 ~~~~~~~-~~~~l~~~l~~~l~-----~--~-~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~ 730 (861)
T 2bpt_A 670 LEEDFRR-YSDAMMNVLAQMIS-----N--P-NARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVA 730 (861)
T ss_dssp TGGGGHH-HHHHHHHHHHHHHH-----C--T-TCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHH
T ss_pred hchhccc-hHHHHHHHHHHHhC-----C--c-cccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 5443321 11222222211111 1 0 011223 344445555555566555667777766554
No 5
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.36 E-value=0.0027 Score=87.74 Aligned_cols=565 Identities=12% Similarity=0.119 Sum_probs=311.0
Q ss_pred CCcchhhHHHHHHhcCC---chhHHhhhhhhhhhhccCCcchhhhccchHHHHHHHHHHhhcCCC--CchhhHHHHHHhh
Q psy5930 473 PYLPMLMDPLVSALNGS---STLISQGLRTLELCVDNLQPDFLYDHIQPVRADLMQALWRSLRSP--NEQVAHVAYRVLG 547 (2426)
Q Consensus 473 PyL~~LM~PLV~AL~~~---~eLvsqGLRTLElcVDNLtpdfLdp~~~pV~~elm~ALw~~Lkp~--~~~~~~~a~RILG 547 (2426)
++.|-|++.|+..++.+ ++....+|++|.-+++.+.|+. +.+...+++..|.+.++.. +...-..|++.||
T Consensus 124 ~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~----~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~ 199 (876)
T 1qgr_A 124 NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQ----LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALL 199 (876)
T ss_dssp TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHH----HGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhh----HHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Confidence 57889999999999664 4678889999999998887775 4566777777777777743 4557788999999
Q ss_pred ccCCCcccccccCCCCccccccCCCCeEEEEecCCCcccccchhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhccc
Q psy5930 548 KFGGGNRKMMIEPQKLDYNIRRSNGPAVVVHFPEHQKTINLSVEKAIDVAITVLKNPAVDMFYRKQGWKVVKGYIISSMN 627 (2426)
Q Consensus 548 KLGGrNR~~L~~p~~L~~~~~~~~~~~~~~~f~~~~~~~~lpl~~~i~~A~~~l~~~~~d~~yr~~A~~~l~~~l~~~l~ 627 (2426)
.+-+. +.+ .+. ... -.+..++...+.+. ..|...|..|++.+..+.-..-.
T Consensus 200 ~~~~~----~~~--~~~------------------~~~---~~~~il~~l~~~~~--~~~~~vr~~a~~~l~~l~~~~~~ 250 (876)
T 1qgr_A 200 NSLEF----TKA--NFD------------------KES---ERHFIMQVVCEATQ--CPDTRVRVAALQNLVKIMSLYYQ 250 (876)
T ss_dssp HHGGG----CHH--HHT------------------SHH---HHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHH----HHH--HHH------------------hHH---HHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHhHH
Confidence 87531 100 000 000 00113333344443 45667899999988765542110
Q ss_pred CCCChhHHHhhhcCCCCCCCCCCCCcccccCChhHH-HHHHHHHHHHHHHhcchhHHHhHHHHHHHHHHHHHHHHHHh-h
Q psy5930 628 LSDNRSTIQKLFSHPSFGNTESSQGTMYKYADPTIR-NTHQNALTGIFMVYLIKELRKDSLLYTVLVVRHYTLVAITQ-Q 705 (2426)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ll~~~f~a~~~~~l~~~a~~f~~~v~rhf~l~~i~~-~ 705 (2426)
. +. .... .++.-++.. .....++.+..|.+|+..++++..-+..-. .
T Consensus 251 ~------~~-----------------------~~~~~~l~~~~~~~--~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~ 299 (876)
T 1qgr_A 251 Y------ME-----------------------TYMGPALFAITIEA--MKSDIDEVALQGIEFWSNVCDEEMDLAIEASE 299 (876)
T ss_dssp G------CH-----------------------HHHTTTHHHHHHHH--HTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H------HH-----------------------HHHHHHHHHHHHHH--hcCCchHHHHHHHHHHHHHHHHHHhHhhhhcc
Confidence 0 00 0001 122222221 123445688888899988888753221100 0
Q ss_pred -c--CCCCCCcccccccCCCCh--HHHHHHHHHhhcC-------CChhhhhHHHHHHHHHHHHHHHhhCCchhhcchhhH
Q psy5930 706 -T--GPFPLYGKSALLEGTMDP--LVLIDAIAVILGH-------EDKELCKPGYIALKCIMETATCITGSIENACNLPLM 773 (2426)
Q Consensus 706 -~--~~~~~~~~~~~~~~~ld~--~vl~DAi~~~l~~-------~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~p~~ 773 (2426)
. +..+. ......+.+ .-++..++..|.. ++..+|++|..++..+.+.. |. .++
T Consensus 300 ~~~~~~~~~----~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~----~~-------~~~ 364 (876)
T 1qgr_A 300 AAEQGRPPE----HTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC----ED-------DIV 364 (876)
T ss_dssp HHHHSSCCS----SCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHH----GG-------GGH
T ss_pred ccccCCCcc----chhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHC----cH-------hhH
Confidence 0 00000 000000001 2256667777763 34567888888888776643 31 234
Q ss_pred HHHHHHHHHhccCchhhhhHhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHc
Q psy5930 774 EYLAERMCNLCYERAWYAKLGGCYAIKFFYNTMAIKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCA 853 (2426)
Q Consensus 774 ~~L~~rf~~~Cy~~~w~~K~gG~~gi~~l~~~~~~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~ 853 (2426)
..+++.+...+.++.|..|.+++.++..+.+..+...+..+...++..++..+.|-. ..++..|-.++..+.+.+.
T Consensus 365 ~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~----~~vr~~a~~~l~~~~~~~~ 440 (876)
T 1qgr_A 365 PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPS----VVVRDTAAWTVGRICELLP 440 (876)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSS----HHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHHHhCc
Confidence 566777777788899999999999999998877656666777889999999998733 3456677777777776554
Q ss_pred CCCCCCCchhhhhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhC-------C---chhhccccchhhhhcc
Q psy5930 854 TPIKEPVDAETLTVQSKALSEVTNELTRNITLPNDLLREQSMYLLQVFAETQG-------K---SVVQVMEPHKDVLADI 923 (2426)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~lv~eL~s~n~~VR~~aq~~L~~lae~t~-------~---~v~ell~p~k~~Ll~~ 923 (2426)
.... ....+..++..++..+.++ +.||+.|-.+|..+++..+ . ...+.+.||-+.++..
T Consensus 441 ~~~~----------~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~ 509 (876)
T 1qgr_A 441 EAAI----------NDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQK 509 (876)
T ss_dssp GGTS----------STTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHH
T ss_pred hhcc----------cHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHH
Confidence 2210 1124666777777777775 8999999999999998765 1 1234566776665543
Q ss_pred CCCCccccccC---chhhhHhhhhhhhhhcccCCCccccCcchhhHHHHHHHHHHhh--------ccCchhhhcCCCCCC
Q psy5930 924 IPPKKLLIRNH---SANAQIGLMEGNTFCQSLTPRLFTTDMSIHEHSSFFQEITNIC--------ESSDQALMKLPCYKP 992 (2426)
Q Consensus 924 I~~Kpl~lRal---pf~~QIG~idaitfcl~L~p~~l~~~~~~~el~rll~E~l~La--------dadD~~l~k~~~~k~ 992 (2426)
+... ++.- .-......++++......-+. .+..-.+++...+.+.+.-. ..+|.
T Consensus 510 L~~~---l~~~~~~~~~~r~~~~~~l~~l~~~~~~--~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~---------- 574 (876)
T 1qgr_A 510 LLET---TDRPDGHQNNLRSSAYESLMEIVKNSAK--DCYPAVQKTTLVIMERLQQVLQMESHIQSTSDR---------- 574 (876)
T ss_dssp HHHH---TTSCSSCSTTHHHHHHHHHHHHHHTCCS--TTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHH----------
T ss_pred HHHH---HhCcCcchhhHHHHHHHHHHHHHHHCch--hhHHHHHHHHHHHHHHHHHHHHHHhccCChhhH----------
Confidence 3211 0000 113445667777665554332 11111122333333333211 01110
Q ss_pred ccccchHHHHHHHHHHhhhcC-C-----chhhHHHHHHHHhhcCCC--HHHHHHHHHHHHHHHccCCC-ChhhHHHhhHH
Q psy5930 993 ISSLVPLRKAAMRALASWHYV-P-----NCSQKIFNTLFAALERPN--PELQEAAFQAMKTFVNGSPI-DLKSVYEVMKP 1063 (2426)
Q Consensus 993 ~~~lv~LRv~ci~lL~~~~~~-~-----~~~~rIi~vfFKsL~s~s--~ei~~aA~~gLk~vL~~~~~-~~e~L~q~LRP 1063 (2426)
...-.+|..++..+...... + .+...|+..+++.|.+.+ +.+.+.|..++..+....+. ....+.+.+..
T Consensus 575 -~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~ 653 (876)
T 1qgr_A 575 -IQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPF 653 (876)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 11234566666665543321 1 244588999999998875 47888999988887754221 11223333444
Q ss_pred HHhhhcCC--CCCCHhHHHHHHHhhhhCCCcccHHHHHHHHHHHHHhhhhhhhhhcCCCCCCcch--hHHHHHHHhhccC
Q psy5930 1064 LLLTLGDY--RNLNLVTARKLSYIVQPFPSSFSEKLCEQLLVNLKNLFENIVAQKENPPKNSETE--KIIVVIIGIFKES 1139 (2426)
Q Consensus 1064 iL~nLsD~--k~Ltv~gLegLarLLeLL~nyFkveiG~KLLdHLk~~~e~~~~~~~~~~~~~~~~--kii~aIinIFHLL 1139 (2426)
++..|.|+ ..+-...+..|+.+.+-...-|.. ....++..+..... ..+.+.++ ..+.++-+|-.-+
T Consensus 654 l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~-~~~~i~~~l~~~l~--------~~~~~~~~~~~~~~~l~~i~~~~ 724 (876)
T 1qgr_A 654 LGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIP-FCDEVMQLLLENLG--------NENVHRSVKPQILSVFGDIALAI 724 (876)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHH-HHHHHHHHHHHHHT--------CTTSCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHhC--------CccccHHhhHHHHHHHHHHHHHh
Confidence 44455543 334445566666666543322221 11222222222211 11111222 3333445555445
Q ss_pred chhHHhhHHHHHHHHHH
Q psy5930 1140 PAAKAQFIEPLISLILE 1156 (2426)
Q Consensus 1140 P~aa~~Fle~Lv~~Vl~ 1156 (2426)
++.-..|++.++..+..
T Consensus 725 g~~~~~~l~~~~~~l~~ 741 (876)
T 1qgr_A 725 GGEFKKYLEVVLNTLQQ 741 (876)
T ss_dssp GGGGGGGHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHH
Confidence 55545577777766543
No 6
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.22 E-value=0.004 Score=86.46 Aligned_cols=338 Identities=12% Similarity=0.110 Sum_probs=211.7
Q ss_pred CcchhhHHHHHHhcC-CchhHHhhhhhhhhhhccCCcchhhhccchHHHHHHHHHHhhcCCCCchhhHHHHHHhhccCCC
Q psy5930 474 YLPMLMDPLVSALNG-SSTLISQGLRTLELCVDNLQPDFLYDHIQPVRADLMQALWRSLRSPNEQVAHVAYRVLGKFGGG 552 (2426)
Q Consensus 474 yL~~LM~PLV~AL~~-~~eLvsqGLRTLElcVDNLtpdfLdp~~~pV~~elm~ALw~~Lkp~~~~~~~~a~RILGKLGGr 552 (2426)
..|-|++.|+..+++ ++.....|+.+|--.++...+.+-...+......++..|.+.++..+...-..|++.|+.+-..
T Consensus 125 ~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~ 204 (852)
T 4fdd_A 125 NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIIS 204 (852)
T ss_dssp TCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTT
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 467789999999977 4567788898887777776554322345566778888888888866666778889999875432
Q ss_pred cccccccCCCCccccccCCCCeEEEEecCCCcccccchhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhcccCCCCh
Q psy5930 553 NRKMMIEPQKLDYNIRRSNGPAVVVHFPEHQKTINLSVEKAIDVAITVLKNPAVDMFYRKQGWKVVKGYIISSMNLSDNR 632 (2426)
Q Consensus 553 NR~~L~~p~~L~~~~~~~~~~~~~~~f~~~~~~~~lpl~~~i~~A~~~l~~~~~d~~yr~~A~~~l~~~l~~~l~~~~~~ 632 (2426)
+- ....-.++..+..-.+.+.+ .|...|+.|++.+..+.-..-
T Consensus 205 ~~-----------------------------~~~~~~~~~~l~~l~~~~~d--~~~~vr~~a~~~L~~l~~~~~------ 247 (852)
T 4fdd_A 205 RT-----------------------------QALMLHIDSFIENLFALAGD--EEPEVRKNVCRALVMLLEVRM------ 247 (852)
T ss_dssp TC-----------------------------HHHHTSHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHHCH------
T ss_pred cc-----------------------------HHHHHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHHHhCH------
Confidence 10 01112234556655566643 567789999988865433210
Q ss_pred hHHHhhhcCCCCCCCCCCCCcccccCChhHHHHHHHHHHHHHHHhcchhHHHhHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy5930 633 STIQKLFSHPSFGNTESSQGTMYKYADPTIRNTHQNALTGIFMVYLIKELRKDSLLYTVLVVRHYTLVAITQQTGPFPLY 712 (2426)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~f~a~~~~~l~~~a~~f~~~v~rhf~l~~i~~~~~~~~~~ 712 (2426)
..+ . ...+.++.-++.. .....++.+..|.+|+..++++-..-. ...+.
T Consensus 248 ~~~----~-------------------~~l~~l~~~l~~~--~~~~~~~vr~~a~e~l~~l~~~~~~~~---~~~~~--- 296 (852)
T 4fdd_A 248 DRL----L-------------------PHMHNIVEYMLQR--TQDQDENVALEACEFWLTLAEQPICKD---VLVRH--- 296 (852)
T ss_dssp HHH----G-------------------GGHHHHHHHHHHH--HTCSSHHHHHHHHHHHHHHTTSTTHHH---HHTTT---
T ss_pred HHH----H-------------------HHHHHHHHHHHHH--ccCCcHHHHHHHHHHHHHHhcchhHHH---HHHHH---
Confidence 000 0 0112222222222 122445678888888777765421000 00100
Q ss_pred cccccccCCCChHHHHHHHHHhh-----------cC-----------CChhhhhHHHHHHHHHHHHHHHhhCCchhhcch
Q psy5930 713 GKSALLEGTMDPLVLIDAIAVIL-----------GH-----------EDKELCKPGYIALKCIMETATCITGSIENACNL 770 (2426)
Q Consensus 713 ~~~~~~~~~ld~~vl~DAi~~~l-----------~~-----------~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~ 770 (2426)
+ .-++..++..| ++ .+-.++++|..++..+.+.. |.
T Consensus 297 ---------~--~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~----~~------- 354 (852)
T 4fdd_A 297 ---------L--PKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVY----RD------- 354 (852)
T ss_dssp ---------H--HHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHH----GG-------
T ss_pred ---------H--HHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhc----cH-------
Confidence 0 11445555554 22 22346778888887776532 31
Q ss_pred hhHHHHHHHHHHhccCchhhhhHhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHH
Q psy5930 771 PLMEYLAERMCNLCYERAWYAKLGGCYAIKFFYNTMAIKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIV 850 (2426)
Q Consensus 771 p~~~~L~~rf~~~Cy~~~w~~K~gG~~gi~~l~~~~~~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~ 850 (2426)
.++..+.+.+..++.++.|..|.+++.++..+.+..+. .+..+..+++..++-.++|-. ..++..|-.++-.+-.
T Consensus 355 ~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~-~~~~~l~~~l~~l~~~l~d~~----~~Vr~~a~~~l~~l~~ 429 (852)
T 4fdd_A 355 ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ-GMIPYLPELIPHLIQCLSDKK----ALVRSITCWTLSRYAH 429 (852)
T ss_dssp GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHH-HHGGGHHHHHHHHHHHTTCSS----HHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHHHH
Confidence 24456777777778889999999999999999887764 445677889999999887754 3455556666665554
Q ss_pred HHcCCCCCCCchhhhhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhCCchhhccccchhhhh
Q psy5930 851 LCATPIKEPVDAETLTVQSKALSEVTNELTRNITLPNDLLREQSMYLLQVFAETQGKSVVQVMEPHKDVLA 921 (2426)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~eL~s~n~~VR~~aq~~L~~lae~t~~~v~ell~p~k~~Ll 921 (2426)
.+.... ....+..++..++.-+.++++.||+.|-.+|..+++..+.. +.|+-..++
T Consensus 430 ~~~~~~-----------~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~----l~~~l~~ll 485 (852)
T 4fdd_A 430 WVVSQP-----------PDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTE----LVPYLAYIL 485 (852)
T ss_dssp HHHHSC-----------TTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG----GGGGHHHHH
T ss_pred Hhccch-----------HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHh----hHhHHHHHH
Confidence 432211 12346778888888888899999999999999999988744 455555444
No 7
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.17 E-value=0.12 Score=74.56 Aligned_cols=450 Identities=9% Similarity=0.115 Sum_probs=228.2
Q ss_pred HHHHHHHHHHHccChh-----hHHHHHHhhHHHHHHHHhh--cccH-----HHHhHHhhc-CCCChhhHHHHHHHHHHHH
Q psy5930 280 EVLEHFAGVFSLMTPQ-----TFREIFASTIDYMVDRMAH--NYTL-----QVISNSFLV-TRDTSPVFATVLVEYLLEH 346 (2426)
Q Consensus 280 e~le~fa~vF~~ld~~-----~F~Ei~~~~i~~l~e~~~~--n~~L-----~~i~q~fL~-~~~~s~~F~~ill~fL~~~ 346 (2426)
-....++.+...+.+. .....+..-+|+|++.+.+ ++.. ..+.+..-. .+...+ +..-++..|+.-
T Consensus 105 ~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~-~~~~ll~~l~~~ 183 (1230)
T 1u6g_C 105 ISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVN-FHPSILTCLLPQ 183 (1230)
T ss_dssp HHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT-THHHHHHHHGGG
T ss_pred HHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHH-HHHHHHHHHHHH
Confidence 3566777777777765 2455677788999988863 2222 222222211 233334 345566666655
Q ss_pred hhhcCCCCccchhHHHHHHHHHhhhcccCCCCCcccccchHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhhcCCchhhH
Q psy5930 347 MEEMGNGNVERSNLCLKLFKLVFGSVSFYPAENEHMLRPHLHQIVNRSMELAMTAKEPYNYFLLLRALFRSIGGGSHDLL 426 (2426)
Q Consensus 347 l~~lg~~~~~~~~~~lrLfkl~F~sv~~~~~~nE~vl~phl~~ii~~~~~~a~~a~ep~~Y~~LLR~lFRSiggg~fe~L 426 (2426)
|. . ....+--+..+ +++++..+.. +..+...++.++. .+.-......-..++..+-.+-+..|. +|
T Consensus 184 L~---~---~~~~vR~~a~~-al~~l~~~~~--~~~~~~~l~~l~~-~L~~~~~~~~r~~a~~~l~~l~~~~~~-~~--- 249 (1230)
T 1u6g_C 184 LT---S---PRLAVRKRTII-ALGHLVMSCG--NIVFVDLIEHLLS-ELSKNDSMSTTRTYIQCIAAISRQAGH-RI--- 249 (1230)
T ss_dssp GG---C---SSHHHHHHHHH-HHHHHTTTC------CTTHHHHHHH-HHHHTCSSCSCTTHHHHHHHHHHHSSG-GG---
T ss_pred Hc---C---CcHHHHHHHHH-HHHHHHHhcC--HHHHHHHHHHHHH-HhccCCchhHHHHHHHHHHHHHHHhHH-HH---
Confidence 53 2 22333333333 3344433321 2223333444433 332211111224567777777777653 33
Q ss_pred hhhHHHHHHHHHHHHHHhhhcCccchhhhHHhhhhhccccccc-cccCCcchhhHHHHHHhcCCchh-------------
Q psy5930 427 YQEFLPLLRNLLQGLNSLQSGLHKQQMKDLFVELCLTVPVRLS-SLLPYLPMLMDPLVSALNGSSTL------------- 492 (2426)
Q Consensus 427 YkeilPLLp~lLe~Ln~Ll~~~~~~~~RdL~VELCLTVPvRLS-~LLPyL~~LM~PLV~AL~~~~eL------------- 492 (2426)
.|.++.++..+-+.+. ..++..|+...+.+-++.-.+. .+-||++.++++++..+...++.
T Consensus 250 ----~~~l~~l~~~ll~~l~-d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~ 324 (1230)
T 1u6g_C 250 ----GEYLEKIIPLVVKFCN-VDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMD 324 (1230)
T ss_dssp ----TTSCTTHHHHHHHHHS-SCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC----------------
T ss_pred ----HHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCccccccccccc
Confidence 3333333333333333 3456788887776655544332 35689999999999888643221
Q ss_pred -------------------------HHhhhhhhhhhhccCCcchhhhccchHHHHHHHHHHhhcCCCCchhhHHHHHHhh
Q psy5930 493 -------------------------ISQGLRTLELCVDNLQPDFLYDHIQPVRADLMQALWRSLRSPNEQVAHVAYRVLG 547 (2426)
Q Consensus 493 -------------------------vsqGLRTLElcVDNLtpdfLdp~~~pV~~elm~ALw~~Lkp~~~~~~~~a~RILG 547 (2426)
-..|..+|.-.+.. .|+ .+.|+..+++..|-++++-.+..+-..|++.||
T Consensus 325 ~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~-~~~----~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~ 399 (1230)
T 1u6g_C 325 ADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVST-RHE----MLPEFYKTVSPALISRFKEREENVKADVFHAYL 399 (1230)
T ss_dssp --------------------CTTHHHHHHHHHHHHHHTT-CCT----THHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHH
T ss_pred ccccccchhhcccccccccccCHHHHHHHHHHHHHHHHh-chh----HHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 12234444444432 233 345556666666777776444555556666554
Q ss_pred ccCCCccccc---ccCCCCccccccCCCCeEEEEecCCCcccccchhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHh
Q psy5930 548 KFGGGNRKMM---IEPQKLDYNIRRSNGPAVVVHFPEHQKTINLSVEKAIDVAITVLKNPAVDMFYRKQGWKVVKGYIIS 624 (2426)
Q Consensus 548 KLGGrNR~~L---~~p~~L~~~~~~~~~~~~~~~f~~~~~~~~lpl~~~i~~A~~~l~~~~~d~~yr~~A~~~l~~~l~~ 624 (2426)
.+-+.-.... ..+.. ++. -.|+...+.--+...++...+.+.+ .+...|..|+..+..++..
T Consensus 400 ~l~~~~~~~~~~~~~~~~--~~~-----------~~~~~~~~~~~l~~ll~~l~~~l~~--~~~~vr~~~~~~L~~l~~~ 464 (1230)
T 1u6g_C 400 SLLKQTRPVQSWLCDPDA--MEQ-----------GETPLTMLQSQVPNIVKALHKQMKE--KSVKTRQCCFNMLTELVNV 464 (1230)
T ss_dssp HHHHHHCCC-------------------------CCCHHHHHHHHTTHHHHHHHHHTTC--SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccccccCccc--ccc-----------ccchHHHHHHHhhHHHHHHHHHhcc--CCHHHHHHHHHHHHHHHHH
Confidence 4422111000 00000 000 0011111222334455555566654 4556788888888765543
Q ss_pred cccCCCChhHHHhhhcCCCCCCCCCCCCcccccCChhHHHHHHHHHHHHHHHhcc----hhHHHhHHHHHHHHHHHHHHH
Q psy5930 625 SMNLSDNRSTIQKLFSHPSFGNTESSQGTMYKYADPTIRNTHQNALTGIFMVYLI----KELRKDSLLYTVLVVRHYTLV 700 (2426)
Q Consensus 625 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~f~a~~~----~~l~~~a~~f~~~v~rhf~l~ 700 (2426)
. ++.. ...+..++..++..... .+.+.++...+..++..
T Consensus 465 ~---~~~l------------------------------~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~---- 507 (1230)
T 1u6g_C 465 L---PGAL------------------------------TQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCN---- 507 (1230)
T ss_dssp S---TTTT------------------------------GGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHS----
T ss_pred c---hhhh------------------------------HHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHh----
Confidence 1 1100 00122233333333222 24555555544443321
Q ss_pred HHHhhcCCCCCCcccccccCCCChH--HHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHhhCC---chhhcchhhHHH
Q psy5930 701 AITQQTGPFPLYGKSALLEGTMDPL--VLIDAIAVILGHEDKELCKPGYIALKCIMETATCITGS---IENACNLPLMEY 775 (2426)
Q Consensus 701 ~i~~~~~~~~~~~~~~~~~~~ld~~--vl~DAi~~~l~~~~~~~~~~~~~~l~~~~~~~~~i~~~---~~~~~~~p~~~~ 775 (2426)
.++. .+.|. -++..++.++.+.+..++..+..++..+.+.. |. .....-.|++..
T Consensus 508 -----~~~~-----------~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~----~~~~~~~~~~~~~~~~~ 567 (1230)
T 1u6g_C 508 -----HSPQ-----------VFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVI----RPLDQPSSFDATPYIKD 567 (1230)
T ss_dssp -----SCGG-----------GGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH----CCSSSCCCCCCHHHHHH
T ss_pred -----CCHH-----------HHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHh----cCcccccccchHHHHHH
Confidence 1110 01111 26788888898888877776777776665532 33 111122478899
Q ss_pred HHHHHHHhc--cCchhhhhHhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhc
Q psy5930 776 LAERMCNLC--YERAWYAKLGGCYAIKFFYNTMAIKWVYSHMFVFVKALLFVMM 827 (2426)
Q Consensus 776 L~~rf~~~C--y~~~w~~K~gG~~gi~~l~~~~~~~wl~~~~~~ivraLlfvlk 827 (2426)
++..++..+ +++....|.+.+-++..|+...+..|. .+...++..|+..++
T Consensus 568 ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~-~~~~~~l~~L~~~l~ 620 (1230)
T 1u6g_C 568 LFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLG-SDLPNTLQIFLERLK 620 (1230)
T ss_dssp HHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCC-THHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhh-hhHHHHHHHHHHHhc
Confidence 999999888 888888999999999999998865542 344566666665554
No 8
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.82 E-value=0.067 Score=77.28 Aligned_cols=579 Identities=9% Similarity=0.056 Sum_probs=288.3
Q ss_pred hhHHHHHHHHHHHHhhhcCCCCccchhHHHHHHHHHhhhcccCCCCCcccccchHHHHHHHHHHHHHhhcCchhHHHHHH
Q psy5930 333 PVFATVLVEYLLEHMEEMGNGNVERSNLCLKLFKLVFGSVSFYPAENEHMLRPHLHQIVNRSMELAMTAKEPYNYFLLLR 412 (2426)
Q Consensus 333 ~~F~~ill~fL~~~l~~lg~~~~~~~~~~lrLfkl~F~sv~~~~~~nE~vl~phl~~ii~~~~~~a~~a~ep~~Y~~LLR 412 (2426)
..+..-++++|.+-+.+ ..+.....-.+..|.-+. ..++ ..+.||+.+++..-++... ..+|..=-.-++
T Consensus 128 ~~~~~~llp~L~~~l~~--~~~~~~~~~al~~l~~~~---~~~~----~~l~~~~~~ll~~l~~~L~-~~~~~vR~~a~~ 197 (1230)
T 1u6g_C 128 ANVCKKITGRLTSAIAK--QEDVSVQLEALDIMADML---SRQG----GLLVNFHPSILTCLLPQLT-SPRLAVRKRTII 197 (1230)
T ss_dssp HHHHHHHHHHHHHHHSC--CSCHHHHHHHHHHHHHHH---HHTC----SSCTTTHHHHHHHHGGGGG-CSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC--CCchHHHHHHHHHHHHHH---HHhH----hHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHH
Confidence 34677888888887754 112111111122222221 1222 3567888888776665432 334322111122
Q ss_pred HHHHhhcCCchhhHhhhHHHHHHHHHHHHHHhhhcCccchhhhHHhhhhhccccccccccCCcchhhHHHHHHhcC-Cch
Q psy5930 413 ALFRSIGGGSHDLLYQEFLPLLRNLLQGLNSLQSGLHKQQMKDLFVELCLTVPVRLSSLLPYLPMLMDPLVSALNG-SST 491 (2426)
Q Consensus 413 ~lFRSiggg~fe~LYkeilPLLp~lLe~Ln~Ll~~~~~~~~RdL~VELCLTVPvRLS~LLPyL~~LM~PLV~AL~~-~~e 491 (2426)
+ +.+++...-+.+|. +++|.+++.|..--....+...=+.+.+++-.+|-+ +-||++-+|+.++.+++. .++
T Consensus 198 a-l~~l~~~~~~~~~~---~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~l~~l~~~ll~~l~d~~~~ 270 (1230)
T 1u6g_C 198 A-LGHLVMSCGNIVFV---DLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHR---IGEYLEKIIPLVVKFCNVDDDE 270 (1230)
T ss_dssp H-HHHHTTTC----CT---THHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGG---GTTSCTTHHHHHHHHHSSCCTT
T ss_pred H-HHHHHHhcCHHHHH---HHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHhcCCCHH
Confidence 1 12222211122333 345666666654321122233446788888888874 579999999999999975 566
Q ss_pred hHHhhhhhhhhhhccCCcchhhhccchHHHHHHHHHHhhcCC-CCchhhHHHHHHhhccCCCcccccccCCCCccccccC
Q psy5930 492 LISQGLRTLELCVDNLQPDFLYDHIQPVRADLMQALWRSLRS-PNEQVAHVAYRVLGKFGGGNRKMMIEPQKLDYNIRRS 570 (2426)
Q Consensus 492 LvsqGLRTLElcVDNLtpdfLdp~~~pV~~elm~ALw~~Lkp-~~~~~~~~a~RILGKLGGrNR~~L~~p~~L~~~~~~~ 570 (2426)
+-..++.+++.|+..+..+ +.|...+++..|.+.++- +++.+. ... ..++ ..+
T Consensus 271 vR~~a~~~l~~l~~~~~~~-----~~~~l~~li~~ll~~l~~d~~~~~~-~d~----~~~~----------~~~------ 324 (1230)
T 1u6g_C 271 LREYCIQAFESFVRRCPKE-----VYPHVSTIINICLKYLTYDPNYNYD-DED----EDEN----------AMD------ 324 (1230)
T ss_dssp THHHHHHHHHHHHHCTTCC-----CHHHHHHHHHHHTTCCCCC-------------------------------------
T ss_pred HHHHHHHHHHHHHHHChHH-----HHHhHHHHHHHHHHHhCCCCCCCCc-ccc----cccc----------ccc------
Confidence 7788999999999987665 578889999999988873 222100 000 0000 000
Q ss_pred CCCeEEEEecCCCcccccchhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhcccCCCChhHHHhhhcCCCCCCCCCC
Q psy5930 571 NGPAVVVHFPEHQKTINLSVEKAIDVAITVLKNPAVDMFYRKQGWKVVKGYIISSMNLSDNRSTIQKLFSHPSFGNTESS 650 (2426)
Q Consensus 571 ~~~~~~~~f~~~~~~~~lpl~~~i~~A~~~l~~~~~d~~yr~~A~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 650 (2426)
++ .+...... .+. ..-.........|+.|...+..+... .++..
T Consensus 325 ~~-------~~~~~~~~--~~~------~~~~~~d~~~~vR~~A~~~l~~l~~~---~~~~~------------------ 368 (1230)
T 1u6g_C 325 AD-------GGDDDDQG--SDD------EYSDDDDMSWKVRRAAAKCLDAVVST---RHEML------------------ 368 (1230)
T ss_dssp -----------------------------------CTTHHHHHHHHHHHHHHTT---CCTTH------------------
T ss_pred cc-------ccccchhh--ccc------ccccccccCHHHHHHHHHHHHHHHHh---chhHH------------------
Confidence 00 00000000 000 00000111122477777777654431 11111
Q ss_pred CCcccccCChhHHHHHHHHHHHHHH--HhcchhHHHhHHHHHHHHHHHHHHHHHHhhcCCCCCCcccc-cccCCCCh--H
Q psy5930 651 QGTMYKYADPTIRNTHQNALTGIFM--VYLIKELRKDSLLYTVLVVRHYTLVAITQQTGPFPLYGKSA-LLEGTMDP--L 725 (2426)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~ll~~~f~--a~~~~~l~~~a~~f~~~v~rhf~l~~i~~~~~~~~~~~~~~-~~~~~ld~--~ 725 (2426)
...+..++..+.. ....++.|..+...+..+++...... ....++... ... .....+++ .
T Consensus 369 ------------~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~l~ 433 (1230)
T 1u6g_C 369 ------------PEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQ-SWLCDPDAM--EQGETPLTMLQSQVP 433 (1230)
T ss_dssp ------------HHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC---------------CCCHHHHHHHHTT
T ss_pred ------------HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhcccc-ccccCcccc--ccccchHHHHHHHhh
Confidence 1111111111111 11122333333333333322211000 000000000 000 00000011 1
Q ss_pred HHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHhhCCchhhcchhhHHHHHHHHHHhccCchh--hhhHhHHHHHHHHH
Q psy5930 726 VLIDAIAVILGHEDKELCKPGYIALKCIMETATCITGSIENACNLPLMEYLAERMCNLCYERAW--YAKLGGCYAIKFFY 803 (2426)
Q Consensus 726 vl~DAi~~~l~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~p~~~~L~~rf~~~Cy~~~w--~~K~gG~~gi~~l~ 803 (2426)
.+++++...|.+++..++..+..++..+.+.. +. . -.+.+..++..+....-++.| ..+...+..+..++
T Consensus 434 ~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~----~~--~--l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~ 505 (1230)
T 1u6g_C 434 NIVKALHKQMKEKSVKTRQCCFNMLTELVNVL----PG--A--LTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVIL 505 (1230)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS----TT--T--TGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHc----hh--h--hHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHH
Confidence 26778888899999999988888888776642 11 1 125678888888888888776 67777777787777
Q ss_pred HhchHHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhhhhhhhhHHHHHHHHhhhc
Q psy5930 804 NTMAIKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAETLTVQSKALSEVTNELTRNI 883 (2426)
Q Consensus 804 ~~~~~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~eL 883 (2426)
+..+..-+..+.-.++..|+..+.|-.. .+...|-.++..+++.+....... . ......+..++..++..+
T Consensus 506 ~~~~~~~~~~~l~~llp~L~~~l~d~~~----~v~~~al~~l~~l~~~~~~~~~~~--~---~~~~~~~~~ll~~ll~~l 576 (1230)
T 1u6g_C 506 CNHSPQVFHPHVQALVPPVVACVGDPFY----KITSEALLVTQQLVKVIRPLDQPS--S---FDATPYIKDLFTCTIKRL 576 (1230)
T ss_dssp HSSCGGGGHHHHTTTHHHHHHHHTCSSH----HHHHHHHHHHHHHHHHHCCSSSCC--C---CCCHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHhHHHHHHHHHHHHHcccch----HHHHHHHHHHHHHHHHhcCccccc--c---cchHHHHHHHHHHHHHHH
Confidence 7665543444556788888888877432 233456666777776654311000 0 011223566777777777
Q ss_pred --CCCChHHHHHHHHHHHHHHHHhCCchhhccccchhhhhccCCCCccccccCchhhhHhhhhhhhhhcccCCCccccCc
Q psy5930 884 --TLPNDLLREQSMYLLQVFAETQGKSVVQVMEPHKDVLADIIPPKKLLIRNHSANAQIGLMEGNTFCQSLTPRLFTTDM 961 (2426)
Q Consensus 884 --~s~n~~VR~~aq~~L~~lae~t~~~v~ell~p~k~~Ll~~I~~Kpl~lRalpf~~QIG~idaitfcl~L~p~~l~~~~ 961 (2426)
.+++..||+.|-.++..+++..|..+...+...-..|...+-... ...+.+.++++...-. ...+.
T Consensus 577 ~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~---------~r~~~~~al~~i~~~~---~~~~~ 644 (1230)
T 1u6g_C 577 KAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEI---------TRLTTVKALTLIAGSP---LKIDL 644 (1230)
T ss_dssp SCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSS---------HHHHHHHHHHHHTTCS---SCCCC
T ss_pred hccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccch---------hHHHHHHHHHHHHhCc---cccch
Confidence 778889999999999999999885543222111111222121111 2344555555554311 11111
Q ss_pred chhhHHHHHHHHHHhhccCchhhhcCCCCCCccccchHHHHHHHHHHhhhc-CCc-h-hhHHHHHHHH---hhcCCCHHH
Q psy5930 962 SIHEHSSFFQEITNICESSDQALMKLPCYKPISSLVPLRKAAMRALASWHY-VPN-C-SQKIFNTLFA---ALERPNPEL 1035 (2426)
Q Consensus 962 ~~~el~rll~E~l~LadadD~~l~k~~~~k~~~~lv~LRv~ci~lL~~~~~-~~~-~-~~rIi~vfFK---sL~s~s~ei 1035 (2426)
. .-+..++..+......+| ..+|..++.++..... .++ + ...+..++-. .+...+.++
T Consensus 645 ~-~~~~~i~~~L~~~l~~~~---------------~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~~ll~ll~~~D~~~ 708 (1230)
T 1u6g_C 645 R-PVLGEGVPILASFLRKNQ---------------RALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHV 708 (1230)
T ss_dssp H-HHHHHHHHHHHHHTTSCC---------------HHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHHH
T ss_pred H-HHHHHHHHHHHHHHHhCC---------------HHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcCcchHHH
Confidence 0 111223333332222222 2478888887764432 221 1 1233333322 234567789
Q ss_pred HHHHHHHHHHHHccC
Q psy5930 1036 QEAAFQAMKTFVNGS 1050 (2426)
Q Consensus 1036 ~~aA~~gLk~vL~~~ 1050 (2426)
...++++|..++...
T Consensus 709 ~~~~~~~L~~l~~~~ 723 (1230)
T 1u6g_C 709 SQMAISFLTTLAKVY 723 (1230)
T ss_dssp HHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999998654
No 9
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=97.77 E-value=0.03 Score=73.36 Aligned_cols=299 Identities=12% Similarity=0.107 Sum_probs=180.9
Q ss_pred HHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHhhCCchhhcchhhHHHHHHHHHHhccCchhhhhHhHHHHHHHHHHhc
Q psy5930 727 LIDAIAVILGHEDKELCKPGYIALKCIMETATCITGSIENACNLPLMEYLAERMCNLCYERAWYAKLGGCYAIKFFYNTM 806 (2426)
Q Consensus 727 l~DAi~~~l~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~p~~~~L~~rf~~~Cy~~~w~~K~gG~~gi~~l~~~~ 806 (2426)
++..+...+.+++..+++.|..++..+.+.. +.. .+..++...+..++.++.|..|.+.+..+..+.+..
T Consensus 204 l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~----~~~------~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~ 273 (588)
T 1b3u_A 204 IIPMFSNLASDEQDSVRLLAVEACVNIAQLL----PQE------DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAV 273 (588)
T ss_dssp HHHHHHHHHTCSCHHHHTTHHHHHHHHHHHS----CHH------HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhC----CHH------HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHh
Confidence 6778888889999999999999998876632 211 233456667777788999999999999999999887
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhhhhhhhhHHHHHHHHhhhcCCC
Q psy5930 807 AIKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAETLTVQSKALSEVTNELTRNITLP 886 (2426)
Q Consensus 807 ~~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~eL~s~ 886 (2426)
+..- +..+++..++..++|-. ..++..|-..+..+...+... . .....+..++..+..-+.++
T Consensus 274 ~~~~---~~~~l~~~l~~~l~d~~----~~vr~~a~~~l~~~~~~~~~~---~-------~~~~~~~~l~p~l~~~l~d~ 336 (588)
T 1b3u_A 274 GPEI---TKTDLVPAFQNLMKDCE----AEVRAAASHKVKEFCENLSAD---C-------RENVIMSQILPCIKELVSDA 336 (588)
T ss_dssp CHHH---HHHTHHHHHHHHHTCSS----HHHHHHHHHHHHHHHHTSCTT---T-------HHHHHHHTHHHHHHHHHTCS
T ss_pred Cccc---chhHHHHHHHHHhCCCc----HHHHHHHHHHHHHHHHHhChh---h-------hhhHHHHHHHHHHHHHhcCC
Confidence 5543 23456777777787743 345556666666665543211 0 00112444555556667899
Q ss_pred ChHHHHHHHHHHHHHHHHhCCchh--hccccchhhhhccCCCCccccccCchhhhHhhhhhhhhhcccCCCccccCcchh
Q psy5930 887 NDLLREQSMYLLQVFAETQGKSVV--QVMEPHKDVLADIIPPKKLLIRNHSANAQIGLMEGNTFCQSLTPRLFTTDMSIH 964 (2426)
Q Consensus 887 n~~VR~~aq~~L~~lae~t~~~v~--ell~p~k~~Ll~~I~~Kpl~lRalpf~~QIG~idaitfcl~L~p~~l~~~~~~~ 964 (2426)
+..||+++-.+|..+++..|.... .++ |.-..++ +.-.-..+.+.+.++.-+...-++ +
T Consensus 337 ~~~vR~~a~~~l~~l~~~~~~~~~~~~l~-p~l~~~l----------~d~~~~Vr~~a~~~l~~l~~~~~~--------~ 397 (588)
T 1b3u_A 337 NQHVKSALASVIMGLSPILGKDNTIEHLL-PLFLAQL----------KDECPEVRLNIISNLDCVNEVIGI--------R 397 (588)
T ss_dssp CHHHHHHHHTTGGGGHHHHCHHHHHHHTH-HHHHHHH----------TCSCHHHHHHHHTTCHHHHHHSCH--------H
T ss_pred CHHHHHHHHHHHHHHHHHhhHhHHHHHHH-HHHHHHh----------CCCchHHHHHHHHHHHHHHHhcCH--------H
Confidence 999999999999999988875321 121 2111111 111123444444444433221110 1
Q ss_pred hH-HHHHHHHHHhhccCchhhhcCCCCCCccccchHHHHHHHHHHh---hhcCCchhhHHHHHHHHhhcCCCHHHHHHHH
Q psy5930 965 EH-SSFFQEITNICESSDQALMKLPCYKPISSLVPLRKAAMRALAS---WHYVPNCSQKIFNTLFAALERPNPELQEAAF 1040 (2426)
Q Consensus 965 el-~rll~E~l~LadadD~~l~k~~~~k~~~~lv~LRv~ci~lL~~---~~~~~~~~~rIi~vfFKsL~s~s~ei~~aA~ 1040 (2426)
.+ ..++.....+.+ |. .+ ..|.+++.++.. ......+...++..+++.|..++++|.++|.
T Consensus 398 ~~~~~~lp~l~~~~~--d~------~~-------~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~ 462 (588)
T 1b3u_A 398 QLSQSLLPAIVELAE--DA------KW-------RVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAAT 462 (588)
T ss_dssp HHHHHHHHHHHHHHT--CS------SH-------HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc--CC------Cc-------hHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 11 223333333331 11 11 357777766553 2222234457899999999999999999999
Q ss_pred HHHHHHHccCCCChhhHHHhhHHHHhhhcCCCCC--CHhHHHHHHHhhhh
Q psy5930 1041 QAMKTFVNGSPIDLKSVYEVMKPLLLTLGDYRNL--NLVTARKLSYIVQP 1088 (2426)
Q Consensus 1041 ~gLk~vL~~~~~~~e~L~q~LRPiL~nLsD~k~L--tv~gLegLarLLeL 1088 (2426)
.+|..+..... ++.....+-|.|..+.++..- -...++.++.+.+-
T Consensus 463 ~~l~~l~~~~~--~~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~ 510 (588)
T 1b3u_A 463 SNLKKLVEKFG--KEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEV 510 (588)
T ss_dssp HHHHHHHHHHC--HHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--chhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHh
Confidence 99999886532 344455667777766644322 23455555555543
No 10
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=97.72 E-value=0.02 Score=75.10 Aligned_cols=461 Identities=11% Similarity=0.032 Sum_probs=253.6
Q ss_pred CCcchhhHHHHHHhcC-CchhHHhhhhhhhhhhccCCcchhhhccchHHHHHHHHHHhhcCCCCchhhHHHHHHhhccCC
Q psy5930 473 PYLPMLMDPLVSALNG-SSTLISQGLRTLELCVDNLQPDFLYDHIQPVRADLMQALWRSLRSPNEQVAHVAYRVLGKFGG 551 (2426)
Q Consensus 473 PyL~~LM~PLV~AL~~-~~eLvsqGLRTLElcVDNLtpdfLdp~~~pV~~elm~ALw~~Lkp~~~~~~~~a~RILGKLGG 551 (2426)
+|.+.|++.|...++. .++.-..+..+|.-...+++++.+.+.+-|++.++. +..+...-+.|.++||.+..
T Consensus 83 ~~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~-------~~~~~~~R~~a~~~l~~~~~ 155 (588)
T 1b3u_A 83 EYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLA-------GGDWFTSRTSACGLFSVCYP 155 (588)
T ss_dssp GGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHH-------TCSSHHHHHHHGGGHHHHTT
T ss_pred HHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHh-------cCCCcHHHHHHHHHHHHHHH
Confidence 3678888888776654 456778888999989999988876666655554443 33344566778888887764
Q ss_pred CcccccccCCCCccccccCCCCeEEEEecCCCcccccchhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhccc---C
Q psy5930 552 GNRKMMIEPQKLDYNIRRSNGPAVVVHFPEHQKTINLSVEKAIDVAITVLKNPAVDMFYRKQGWKVVKGYIISSMN---L 628 (2426)
Q Consensus 552 rNR~~L~~p~~L~~~~~~~~~~~~~~~f~~~~~~~~lpl~~~i~~A~~~l~~~~~d~~yr~~A~~~l~~~l~~~l~---~ 628 (2426)
.--. .. .+..+....+.+.+ .+..-|+.|.+.+..+.-..-+ .
T Consensus 156 ~~~~--------~~------------------------~~~l~~~l~~l~~d--~~~~VR~~a~~~l~~l~~~~~~~~~~ 201 (588)
T 1b3u_A 156 RVSS--------AV------------------------KAELRQYFRNLCSD--DTPMVRRAAASKLGEFAKVLELDNVK 201 (588)
T ss_dssp TSCH--------HH------------------------HHHHHHHHHHHHTC--SCHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred hcCH--------HH------------------------HHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHhcHHhHH
Confidence 3200 00 11233333344433 4555677777776654332110 0
Q ss_pred CCChhHHHhhhcCCCCCCCCCCCCcccccCChhHHHHHHHHHHH-----------------HHHHhcc--hhHHHhHHHH
Q psy5930 629 SDNRSTIQKLFSHPSFGNTESSQGTMYKYADPTIRNTHQNALTG-----------------IFMVYLI--KELRKDSLLY 689 (2426)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-----------------~f~a~~~--~~l~~~a~~f 689 (2426)
+.-...+..+..+.. ...|..-...|.. +...... ...|..|...
T Consensus 202 ~~l~~~l~~~~~d~~----------------~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~ 265 (588)
T 1b3u_A 202 SEIIPMFSNLASDEQ----------------DSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADK 265 (588)
T ss_dssp HTHHHHHHHHHTCSC----------------HHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCc----------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHH
Confidence 000011222222210 0111111111111 1111111 1233333333
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCcccccccCCCChHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHhhCCchhhcc
Q psy5930 690 TVLVVRHYTLVAITQQTGPFPLYGKSALLEGTMDPLVLIDAIAVILGHEDKELCKPGYIALKCIMETATCITGSIENACN 769 (2426)
Q Consensus 690 ~~~v~rhf~l~~i~~~~~~~~~~~~~~~~~~~ld~~vl~DAi~~~l~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~ 769 (2426)
+..++.. .++ . .-...+++.+...+.+++.+++..+..++..+.+.. |... ..
T Consensus 266 l~~l~~~---------~~~--------~----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~----~~~~--~~ 318 (588)
T 1b3u_A 266 FTELQKA---------VGP--------E----ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENL----SADC--RE 318 (588)
T ss_dssp HHHHHHH---------HCH--------H----HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTS----CTTT--HH
T ss_pred HHHHHHH---------hCc--------c----cchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHh----Chhh--hh
Confidence 3333222 110 0 001237889999999999999999999998886632 2211 11
Q ss_pred hhhHHHHHHHHHHhccCchhhhhHhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHH
Q psy5930 770 LPLMEYLAERMCNLCYERAWYAKLGGCYAIKFFYNTMAIKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLI 849 (2426)
Q Consensus 770 ~p~~~~L~~rf~~~Cy~~~w~~K~gG~~gi~~l~~~~~~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll 849 (2426)
.++...+.+.+..++.++.|..|.+.+.++..+...++..-. ...++..++..++|-. ..++..|-..+..+.
T Consensus 319 ~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~---~~~l~p~l~~~l~d~~----~~Vr~~a~~~l~~l~ 391 (588)
T 1b3u_A 319 NVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNT---IEHLLPLFLAQLKDEC----PEVRLNIISNLDCVN 391 (588)
T ss_dssp HHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHH---HHHTHHHHHHHHTCSC----HHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHH---HHHHHHHHHHHhCCCc----hHHHHHHHHHHHHHH
Confidence 145567777888889999999999999999999888765432 2346667777777643 345555555565555
Q ss_pred HHHcCCCCCCCchhhhhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhCCchhhccccchhhhhccCCCCcc
Q psy5930 850 VLCATPIKEPVDAETLTVQSKALSEVTNELTRNITLPNDLLREQSMYLLQVFAETQGKSVVQVMEPHKDVLADIIPPKKL 929 (2426)
Q Consensus 850 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~eL~s~n~~VR~~aq~~L~~lae~t~~~v~ell~p~k~~Ll~~I~~Kpl 929 (2426)
+.... + .....++..+..-+.+++..||.++-.++..+++..|.... .| .++..+. +-
T Consensus 392 ~~~~~-----------~---~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~---~~---~l~~~l~-~~- 449 (588)
T 1b3u_A 392 EVIGI-----------R---QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFF---DE---KLNSLCM-AW- 449 (588)
T ss_dssp HHSCH-----------H---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGC---CH---HHHHHHH-HG-
T ss_pred HhcCH-----------H---HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHH---HH---HHHHHHH-HH-
Confidence 43210 0 11233444555556788999999999999999988875421 11 1111000 00
Q ss_pred ccccCchhhhHhhhhhhhhhccc-CCCccccCcchhhHHHHHHHHHHhhccCchhhhcCCCCCCccccchHHHHHHHHHH
Q psy5930 930 LIRNHSANAQIGLMEGNTFCQSL-TPRLFTTDMSIHEHSSFFQEITNICESSDQALMKLPCYKPISSLVPLRKAAMRALA 1008 (2426)
Q Consensus 930 ~lRalpf~~QIG~idaitfcl~L-~p~~l~~~~~~~el~rll~E~l~LadadD~~l~k~~~~k~~~~lv~LRv~ci~lL~ 1008 (2426)
+..-.-..+..-+.++..+... .+.+ .+..++..+..+.. | +. -..|.+++.++.
T Consensus 450 -l~d~~~~Vr~~a~~~l~~l~~~~~~~~--------~~~~llp~l~~~~~--~------~~-------~~~R~~a~~~l~ 505 (588)
T 1b3u_A 450 -LVDHVYAIREAATSNLKKLVEKFGKEW--------AHATIIPKVLAMSG--D------PN-------YLHRMTTLFCIN 505 (588)
T ss_dssp -GGCSSHHHHHHHHHHHHHHHHHHCHHH--------HHHHTHHHHHHTTT--C------SC-------HHHHHHHHHHHH
T ss_pred -hcCCcHHHHHHHHHHHHHHHHHhCchh--------HHHHHHHHHHHHhh--C------CC-------HHHHHHHHHHHH
Confidence 0111223444444444433321 1110 01112222222221 1 11 247888777665
Q ss_pred hh---hcCCchhhHHHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCChhhHHHhhHHHHhhhcCCC
Q psy5930 1009 SW---HYVPNCSQKIFNTLFAALERPNPELQEAAFQAMKTFVNGSPIDLKSVYEVMKPLLLTLGDYR 1072 (2426)
Q Consensus 1009 ~~---~~~~~~~~rIi~vfFKsL~s~s~ei~~aA~~gLk~vL~~~~~~~e~L~q~LRPiL~nLsD~k 1072 (2426)
.. .....+..+++..+.+.+..++++|...|-.+|..+...- .++.+.+.+.|+|..+.+..
T Consensus 506 ~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~--~~~~~~~~~~p~l~~l~~d~ 570 (588)
T 1b3u_A 506 VLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPIL--DNSTLQSEVKPILEKLTQDQ 570 (588)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGS--CHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHh--chhhhHHHHHHHHHHHcCCC
Confidence 32 2223355688999999999999999999999999987542 34555566888888775433
No 11
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=96.22 E-value=0.49 Score=59.74 Aligned_cols=299 Identities=12% Similarity=0.115 Sum_probs=162.4
Q ss_pred CcchhhHHHHHHhcCC---chhHHhhhhhhhhhhccCCcchhhhccchHHHHHHHHHHhhcCCC--CchhhHHHHHHhhc
Q psy5930 474 YLPMLMDPLVSALNGS---STLISQGLRTLELCVDNLQPDFLYDHIQPVRADLMQALWRSLRSP--NEQVAHVAYRVLGK 548 (2426)
Q Consensus 474 yL~~LM~PLV~AL~~~---~eLvsqGLRTLElcVDNLtpdfLdp~~~pV~~elm~ALw~~Lkp~--~~~~~~~a~RILGK 548 (2426)
+.|-|++.|+.+++++ ++....|+++|...++...++++.+++ ..++..+.+.|+.. +...-..|++.||.
T Consensus 125 ~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~----~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~ 200 (462)
T 1ibr_B 125 QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS----NEILTAIIQGMRKEEPSNNVKLAATNALLN 200 (462)
T ss_dssp CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH----HHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH----HHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 5788999999999764 568889999999988888777755554 45666666666643 44567889999998
Q ss_pred cCCCcccccccCCCCccccccCCCCeEEEEecCCCcccccchhH-HHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhccc
Q psy5930 549 FGGGNRKMMIEPQKLDYNIRRSNGPAVVVHFPEHQKTINLSVEK-AIDVAITVLKNPAVDMFYRKQGWKVVKGYIISSMN 627 (2426)
Q Consensus 549 LGGrNR~~L~~p~~L~~~~~~~~~~~~~~~f~~~~~~~~lpl~~-~i~~A~~~l~~~~~d~~yr~~A~~~l~~~l~~~l~ 627 (2426)
+-.. +. +..+. .. ... .+....+.+ ...|...|+.|++.+..+.-..-.
T Consensus 201 ~~~~----~~--------~~~~~------------~~----~~~~l~~~l~~~~--~~~~~~vr~~~~~~l~~l~~~~~~ 250 (462)
T 1ibr_B 201 SLEF----TK--------ANFDK------------ES----ERHFIMQVVCEAT--QCPDTRVRVAALQNLVKIMSLYYQ 250 (462)
T ss_dssp HTTT----TH--------HHHTS------------HH----HHHHHHHHHHHHT--TCSSHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHH----HH--------Hhhhh------------hH----HHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 7521 10 00000 00 001 122222333 346777899999888765443210
Q ss_pred CCCChhHHHhhhcCCCCCCCCCCCCcccccCChhHH-HHHHHHHHHHHHHhcchhHHHhHHHHHHHHHHHHHHHHHHhhc
Q psy5930 628 LSDNRSTIQKLFSHPSFGNTESSQGTMYKYADPTIR-NTHQNALTGIFMVYLIKELRKDSLLYTVLVVRHYTLVAITQQT 706 (2426)
Q Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ll~~~f~a~~~~~l~~~a~~f~~~v~rhf~l~~i~~~~ 706 (2426)
. +... .. .++.-++.. .....++.+..|.+|+..++++-.-.....
T Consensus 251 ----------~-----~~~~--------------~~~~l~~~~~~~--~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~-- 297 (462)
T 1ibr_B 251 ----------Y-----METY--------------MGPALFAITIEA--MKSDIDEVALQGIEFWSNVCDEEMDLAIEA-- 297 (462)
T ss_dssp ----------G-----CTTT--------------TTTTHHHHHHHH--HHCSSHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred ----------H-----HHHH--------------HHHHHHHHHHHH--HcCCchHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 0 0000 01 222222222 134567788999999999988752221111
Q ss_pred CCCCCCcccccccCCCC---h--HHHHHHHHHhhcCC-------ChhhhhHHHHHHHHHHHHHHHhhCCchhhcchhhHH
Q psy5930 707 GPFPLYGKSALLEGTMD---P--LVLIDAIAVILGHE-------DKELCKPGYIALKCIMETATCITGSIENACNLPLME 774 (2426)
Q Consensus 707 ~~~~~~~~~~~~~~~ld---~--~vl~DAi~~~l~~~-------~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~p~~~ 774 (2426)
+...-.. ......... + ..++..++..|+.. +..++.+|..++..+.+. +|. .++.
T Consensus 298 ~~~~~~~-~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~----~~~-------~~~~ 365 (462)
T 1ibr_B 298 SEAAEQG-RPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATC----CED-------DIVP 365 (462)
T ss_dssp CCTTCSS-SCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHH----TTT-------THHH
T ss_pred ccccccC-CCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHh----ccH-------HHHH
Confidence 1000000 000001111 1 12445555555432 223455555555554442 231 1223
Q ss_pred HHHHHHHHhccCchhhhhHhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcC
Q psy5930 775 YLAERMCNLCYERAWYAKLGGCYAIKFFYNTMAIKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCAT 854 (2426)
Q Consensus 775 ~L~~rf~~~Cy~~~w~~K~gG~~gi~~l~~~~~~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~ 854 (2426)
.+++.+..+..++.|..|.|++.++..+.+..
T Consensus 366 ~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~------------------------------------------------ 397 (462)
T 1ibr_B 366 HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGP------------------------------------------------ 397 (462)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSS------------------------------------------------
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHhcCC------------------------------------------------
Confidence 33344444444566666666666665554311
Q ss_pred CCCCCCchhhhhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhCCc
Q psy5930 855 PIKEPVDAETLTVQSKALSEVTNELTRNITLPNDLLREQSMYLLQVFAETQGKS 908 (2426)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~lv~eL~s~n~~VR~~aq~~L~~lae~t~~~ 908 (2426)
... .. ...+..++..++.-+.+++..||.+|-.+|..+++..+..
T Consensus 398 --~~~------~~-~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~ 442 (462)
T 1ibr_B 398 --EPS------QL-KPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA 442 (462)
T ss_dssp --CTT------TT-CTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGG
T ss_pred --cHH------HH-HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccc
Confidence 000 00 0123446777888889999999999999999999988753
No 12
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=95.67 E-value=13 Score=52.22 Aligned_cols=257 Identities=12% Similarity=0.044 Sum_probs=134.2
Q ss_pred chhhhhHhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhcCCCc-ccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhh
Q psy5930 787 RAWYAKLGGCYAIKFFYNTMAIKWVYSHMFVFVKALLFVMMDLTG-EVSSGAIDEARRNLKQLIVLCATPIKEPVDAETL 865 (2426)
Q Consensus 787 ~~w~~K~gG~~gi~~l~~~~~~~wl~~~~~~ivraLlfvlkD~p~-e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~ 865 (2426)
..|..+-|++.++..+.+..+..- . ..+..++-++..++. +....++..|-.++-..-+.....
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~-~----~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~---------- 540 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE-K----RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMEN---------- 540 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC------------
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh-h----HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcC----------
Confidence 689999999999999987764321 1 233334445666663 334445555555554444333211
Q ss_pred hhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhCCchhhccccchhhhhccCC---CCccccccCchhhhHhh
Q psy5930 866 TVQSKALSEVTNELTRNITLPNDLLREQSMYLLQVFAETQGKSVVQVMEPHKDVLADIIP---PKKLLIRNHSANAQIGL 942 (2426)
Q Consensus 866 ~~~~~~~~~~~~~lv~eL~s~n~~VR~~aq~~L~~lae~t~~~v~ell~p~k~~Ll~~I~---~Kpl~lRalpf~~QIG~ 942 (2426)
.+.+..++..++.-+ + +.|+..|-.++..+.+..+ +.|.||-+.++.-++ .++ .++-..+...
T Consensus 541 ---~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~----~~l~p~~~~ll~~l~~~l~~~----~~~~~~~~~~ 606 (971)
T 2x1g_F 541 ---PAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQ----LQLKPYADPLLNACHASLNTG----RMKNSDSVRL 606 (971)
T ss_dssp -----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCH----HHHHHHHHHHHHHHHHHHHST----TSCHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHH----HhccccHHHHHHHHHHHHcCC----CCChHHHHHH
Confidence 123555555555555 3 6789999999999997655 335577666654332 221 1466789999
Q ss_pred hhhhhhhcccCCCccccCcchhhHHHHHHHHHH----hhccC--chhhhcCCCCCCccccchHHHHHHHHHHhhhc---C
Q psy5930 943 MEGNTFCQSLTPRLFTTDMSIHEHSSFFQEITN----ICESS--DQALMKLPCYKPISSLVPLRKAAMRALASWHY---V 1013 (2426)
Q Consensus 943 idaitfcl~L~p~~l~~~~~~~el~rll~E~l~----Ladad--D~~l~k~~~~k~~~~lv~LRv~ci~lL~~~~~---~ 1013 (2426)
++|+....+.-| --.+. .-+..++.-.+. +++.+ |+. ...-...|+..|+.... .
T Consensus 607 ~~ai~~i~~~~~-~~~~~---~~~~~ll~~l~~~l~~~~~~~~~~~~------------~~~~~~~~l~~L~~~~~~l~~ 670 (971)
T 2x1g_F 607 MFSIGKLMSLLR-PEEIP---KYLDIIVSPCFEELQAICQADSKTPA------------ARIRTIFRLNMISTLFSSLNT 670 (971)
T ss_dssp HHHHHHHHHTSC-TTHHH---HHHHHHHHHHHHHHHHHHTC---CHH------------HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCC-HHHHH---HHHHHHHHHHHHHHHHHHhcCCCChh------------hHHHHHHHHHHHHHHHhhcCC
Confidence 999988776433 11111 112222222221 22221 110 11223334444443221 0
Q ss_pred -----------C----chhhHHHHHHHHhh--cCCCHHHHHHHHHHHHHHHcc--CCCChhhHHHhhHHHHhhhcCCCCC
Q psy5930 1014 -----------P----NCSQKIFNTLFAAL--ERPNPELQEAAFQAMKTFVNG--SPIDLKSVYEVMKPLLLTLGDYRNL 1074 (2426)
Q Consensus 1014 -----------~----~~~~rIi~vfFKsL--~s~s~ei~~aA~~gLk~vL~~--~~~~~e~L~q~LRPiL~nLsD~k~L 1074 (2426)
+ .+.++|..++.+.+ +..++++++.|..+++..+.. ....| .+-+-+.-++..++.++-
T Consensus 671 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p-~l~~~~~~l~~~~~~~~~- 748 (971)
T 2x1g_F 671 DVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQP-MLQDLCLFIVASFQTRCC- 748 (971)
T ss_dssp -------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CT-HHHHHHHHHHHHCC--CC-
T ss_pred CcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccc-cHHHHHHHHHHHHhcCCc-
Confidence 1 12335666665555 445789999999999985532 22222 233334445555555432
Q ss_pred CHhHHHHHHHhhhhCCC
Q psy5930 1075 NLVTARKLSYIVQPFPS 1091 (2426)
Q Consensus 1075 tv~gLegLarLLeLL~n 1091 (2426)
...|.-++-+++-+..
T Consensus 749 -~~~l~l~~~~i~~~~~ 764 (971)
T 2x1g_F 749 -APTLEISKTAIVMFFK 764 (971)
T ss_dssp -HHHHHHHHHHHTTCCC
T ss_pred -hHHHHHHHHHHHHhCC
Confidence 5567777777666554
No 13
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=95.41 E-value=0.15 Score=59.55 Aligned_cols=182 Identities=13% Similarity=0.089 Sum_probs=121.8
Q ss_pred HHHHHHhccCchhhhhHhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHh-cCCCcccchhHHHHHHHHHHHHHHHHcCC
Q psy5930 777 AERMCNLCYERAWYAKLGGCYAIKFFYNTMAIKWVYSHMFVFVKALLFVM-MDLTGEVSSGAIDEARRNLKQLIVLCATP 855 (2426)
Q Consensus 777 ~~rf~~~Cy~~~w~~K~gG~~gi~~l~~~~~~~wl~~~~~~ivraLlfvl-kD~p~e~~~~~~~~a~~~l~~ll~~~~~~ 855 (2426)
-+.|.....+..|..|.+|..+|..+++.-+.- ......+++++|.-.+ +|.. ..++..|-.++..+.+....
T Consensus 17 ~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~-~~~~~~~i~~~L~~~l~kd~~----~~V~~~a~~~l~~la~~l~~- 90 (242)
T 2qk2_A 17 PKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKL-ENGEYGALVSALKKVITKDSN----VVLVAMAGKCLALLAKGLAK- 90 (242)
T ss_dssp CTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSB-CCCCCHHHHHHHHHHHHHCSC----HHHHHHHHHHHHHHHHHHGG-
T ss_pred CHHHHhhhccCCHHHHHHHHHHHHHHHccCCCC-CCCCHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHHHHHHhh-
Confidence 344566667899999999999999999874321 1123357888888888 5844 33455666667666654321
Q ss_pred CCCCCchhhhhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhCCchhhccccchhhhhccCCCCccccccCc
Q psy5930 856 IKEPVDAETLTVQSKALSEVTNELTRNITLPNDLLREQSMYLLQVFAETQGKSVVQVMEPHKDVLADIIPPKKLLIRNHS 935 (2426)
Q Consensus 856 ~~~~~~~~~~~~~~~~~~~~~~~lv~eL~s~n~~VR~~aq~~L~~lae~t~~~v~ell~p~k~~Ll~~I~~Kpl~lRalp 935 (2426)
........++..+..-+.+++..||++|..+|..+.+..+ +..
T Consensus 91 -----------~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~~------------------------ 133 (242)
T 2qk2_A 91 -----------RFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LEA------------------------ 133 (242)
T ss_dssp -----------GGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HHH------------------------
T ss_pred -----------hHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HHH------------------------
Confidence 1123466678888899999999999999999998876211 111
Q ss_pred hhhhHhhhhhhhhhcccCCCccccCcchhhHHHHHHHHHHhhccCchhhhcCCCCCCccccchHHHHHHHHHHhhhcC--
Q psy5930 936 ANAQIGLMEGNTFCQSLTPRLFTTDMSIHEHSSFFQEITNICESSDQALMKLPCYKPISSLVPLRKAAMRALASWHYV-- 1013 (2426)
Q Consensus 936 f~~QIG~idaitfcl~L~p~~l~~~~~~~el~rll~E~l~LadadD~~l~k~~~~k~~~~lv~LRv~ci~lL~~~~~~-- 1013 (2426)
++..++...+ .++ -+.|..++..|..++..
T Consensus 134 ---------------------------------ll~~l~~~l~-----------~~~----~~vr~~~l~~l~~~l~~~~ 165 (242)
T 2qk2_A 134 ---------------------------------QQESIVESLS-----------NKN----PSVKSETALFIARALTRTQ 165 (242)
T ss_dssp ---------------------------------HHHHHHHHTT-----------CSC----HHHHHHHHHHHHHHHTTCC
T ss_pred ---------------------------------HHHHHHHHHc-----------CCC----hHHHHHHHHHHHHHHHHcC
Confidence 1111111110 010 14677788877765432
Q ss_pred Cc-----hhhHHHHHHHHhhcCCCHHHHHHHHHHHHHHHcc
Q psy5930 1014 PN-----CSQKIFNTLFAALERPNPELQEAAFQAMKTFVNG 1049 (2426)
Q Consensus 1014 ~~-----~~~rIi~vfFKsL~s~s~ei~~aA~~gLk~vL~~ 1049 (2426)
|+ +-..|+..+.+.|..++++|.++|.+++-.+...
T Consensus 166 ~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 166 PTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp GGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 22 2238999999999999999999999999987643
No 14
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=95.22 E-value=0.59 Score=58.99 Aligned_cols=323 Identities=12% Similarity=0.038 Sum_probs=176.2
Q ss_pred HHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHhhCCchhhcchhhHHHHHHHHHHhccCc--hhhhhHhHHHHHHHHHH
Q psy5930 727 LIDAIAVILGHEDKELCKPGYIALKCIMETATCITGSIENACNLPLMEYLAERMCNLCYER--AWYAKLGGCYAIKFFYN 804 (2426)
Q Consensus 727 l~DAi~~~l~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~p~~~~L~~rf~~~Cy~~--~w~~K~gG~~gi~~l~~ 804 (2426)
+-+.++..|.++++.+ ..+..++..+.... +. + . -+..++..++.++-++ .+..+.||+..+..+++
T Consensus 91 ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~----~~-~--~---~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~ 159 (462)
T 1ibr_B 91 VKNYVLQTLGTETYRP-SSASQCVAGIACAE----IP-V--N---QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQ 159 (462)
T ss_dssp HHHHHHHHTTCCCSSS-CSHHHHHHHHHHHH----GG-G--T---CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCchh-hHHHHHHHHHHHHh----cc-c--c---ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Confidence 7788899999998888 87778887775532 11 0 0 1234666677777777 89999999999999998
Q ss_pred hchHHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhhhhhhhhH-HHHHHHHhhhc
Q psy5930 805 TMAIKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAETLTVQSKAL-SEVTNELTRNI 883 (2426)
Q Consensus 805 ~~~~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~lv~eL 883 (2426)
......+..+.-.++..++..+.|-. .+..++..|-.++..++..+. +..+ ...+ ..++..+...+
T Consensus 160 ~~~~~~~~~~~~~ll~~l~~~l~~~~--~~~~vr~~a~~~l~~~~~~~~---------~~~~--~~~~~~~l~~~l~~~~ 226 (462)
T 1ibr_B 160 DIDPEQLQDKSNEILTAIIQGMRKEE--PSNNVKLAATNALLNSLEFTK---------ANFD--KESERHFIMQVVCEAT 226 (462)
T ss_dssp HSCGGGTGGGHHHHHHHHHHHHSTTC--CCHHHHHHHHHHHHHHTTTTH---------HHHT--SHHHHHHHHHHHHHHT
T ss_pred hCCchhhHhHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHHHHHHH---------Hhhh--hhHHHHHHHHHHHHhc
Confidence 87333455666678999999998752 123455555555555432110 0000 0011 12345555567
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCchhhccccchh-hhhccCCCCccccccCchhhhHhhhhhhhhhcccC---------
Q psy5930 884 TLPNDLLREQSMYLLQVFAETQGKSVVQVMEPHKD-VLADIIPPKKLLIRNHSANAQIGLMEGNTFCQSLT--------- 953 (2426)
Q Consensus 884 ~s~n~~VR~~aq~~L~~lae~t~~~v~ell~p~k~-~Ll~~I~~Kpl~lRalpf~~QIG~idaitfcl~L~--------- 953 (2426)
.+++..||..+-++|..+++..+.. +.|+-. .+...+.. - ++...-......++.+.-+....
T Consensus 227 ~~~~~~vr~~~~~~l~~l~~~~~~~----~~~~~~~~l~~~~~~-~--~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~ 299 (462)
T 1ibr_B 227 QCPDTRVRVAALQNLVKIMSLYYQY----METYMGPALFAITIE-A--MKSDIDEVALQGIEFWSNVCDEEMDLAIEASE 299 (462)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHCGGG----CTTTTTTTHHHHHHH-H--HHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH-H--HcCCchHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 8889999999999999999876432 223222 11111100 0 01111111111111111111110
Q ss_pred ------C---CccccCcchhhHHHHHHHHHH-hhccCchhhhcCCCCCCccccchHHHHHHHHHHhhh-cCC-chhhHHH
Q psy5930 954 ------P---RLFTTDMSIHEHSSFFQEITN-ICESSDQALMKLPCYKPISSLVPLRKAAMRALASWH-YVP-NCSQKIF 1021 (2426)
Q Consensus 954 ------p---~~l~~~~~~~el~rll~E~l~-LadadD~~l~k~~~~k~~~~lv~LRv~ci~lL~~~~-~~~-~~~~rIi 1021 (2426)
| ....+-. ..+..++.-++. +.+.|++ . ....+ ..|.+|..+|.... ..+ .....++
T Consensus 300 ~~~~~~~~~~~~~~~~~--~~~~~l~p~l~~~l~~~d~d-~-~~~~~-------~~r~~a~~~L~~l~~~~~~~~~~~~~ 368 (462)
T 1ibr_B 300 AAEQGRPPEHTSKFYAK--GALQYLVPILTQTLTKQDEN-D-DDDDW-------NPCKAAGVCLMLLATCCEDDIVPHVL 368 (462)
T ss_dssp TTCSSSCSSCCCCCHHH--HHHHHHHHHHHHHTTCCCSS-C-CTTCC-------SHHHHHHHHHHHHHHHTTTTHHHHHH
T ss_pred ccccCCCccchhHHHHH--HHhhhccHHHHHHHHhcccc-c-ccccc-------hHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 0 0000000 001122222222 3332211 0 00111 46888877766432 222 3344667
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHccCC--CChhhHHHhhHHHHhhhcCC-CCCCHhHHHHHHHhhhhCCC
Q psy5930 1022 NTLFAALERPNPELQEAAFQAMKTFVNGSP--IDLKSVYEVMKPLLLTLGDY-RNLNLVTARKLSYIVQPFPS 1091 (2426)
Q Consensus 1022 ~vfFKsL~s~s~ei~~aA~~gLk~vL~~~~--~~~e~L~q~LRPiL~nLsD~-k~Ltv~gLegLarLLeLL~n 1091 (2426)
..+-..|.+++..+.++|-.+|-.+..+.. ...+.+.+-+.+++..|.|. .+.--..+..|+++.+.+..
T Consensus 369 ~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 369 PFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccc
Confidence 777778889999999999999999876532 11223333355566666664 34445667777777776654
No 15
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=95.21 E-value=18 Score=51.03 Aligned_cols=657 Identities=12% Similarity=0.114 Sum_probs=312.9
Q ss_pred HHHHHhhcccHHHHhHHhhcCCC----ChhhHHHHHHHHHHHHhhhcCCCCc--cchhHHHHHHHHHhhhcccCCCCCcc
Q psy5930 308 MVDRMAHNYTLQVISNSFLVTRD----TSPVFATVLVEYLLEHMEEMGNGNV--ERSNLCLKLFKLVFGSVSFYPAENEH 381 (2426)
Q Consensus 308 l~e~~~~n~~L~~i~q~fL~~~~----~s~~F~~ill~fL~~~l~~lg~~~~--~~~~~~lrLfkl~F~sv~~~~~~nE~ 381 (2426)
+.+...++|.-..++-.+|+++. ....||..+++..+. .+...|. ++..+-=.|+.++-. +++.++
T Consensus 31 ~L~~~q~sp~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~---~l~~e~~~~~~~~lr~~ll~~l~~----~~~~~~- 102 (980)
T 3ibv_A 31 FIGSLRSSSTGWKICHEIFSEKTKYKPSTRLICLQTLSEKVR---EWNNESNLLELQMIRDSVWSYIKE----LSFLDE- 102 (980)
T ss_dssp HHHHHHHSTTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHH---HCCTTTSHHHHHHHHHHHHHHHHH----CCSTTS-
T ss_pred HHHHHHcChhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH---hCChhhhHHHHHHHHHHHHHHHHH----hcCCCC-
Confidence 34566667777777777776542 335688888887776 4544321 455555566666554 221122
Q ss_pred cccchHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhhcCCchhhHhhhHHHHHHHHHHHHHHh-h-----hcCccchhhh
Q psy5930 382 MLRPHLHQIVNRSMELAMTAKEPYNYFLLLRALFRSIGGGSHDLLYQEFLPLLRNLLQGLNSL-Q-----SGLHKQQMKD 455 (2426)
Q Consensus 382 vl~phl~~ii~~~~~~a~~a~ep~~Y~~LLR~lFRSiggg~fe~LYkeilPLLp~lLe~Ln~L-l-----~~~~~~~~Rd 455 (2426)
.+++.+-+..++.......-|.++=..+..|+..+++|.-+..--.++=+|+.+=|-+... + ..++..+.||
T Consensus 103 --~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd 180 (980)
T 3ibv_A 103 --PAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKD 180 (980)
T ss_dssp --CTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHH
T ss_pred --cHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHH
Confidence 3566666666666555555566666666777777765432211122344444333433211 0 0122223355
Q ss_pred HH--------hhhhhccccccccccCCcchhhHHHHHHh-cCCchhHHhhhhhhhhhhccCCcchhhhccchHHHHHHHH
Q psy5930 456 LF--------VELCLTVPVRLSSLLPYLPMLMDPLVSAL-NGSSTLISQGLRTLELCVDNLQPDFLYDHIQPVRADLMQA 526 (2426)
Q Consensus 456 L~--------VELCLTVPvRLS~LLPyL~~LM~PLV~AL-~~~~eLvsqGLRTLElcVDNLtpdfLdp~~~pV~~elm~A 526 (2426)
.+ +|.|+.+ |+ ..+ +.+++++.++|+||--||.=.++.++-. +.++..
T Consensus 181 ~m~~~~~~~i~~~~~~i---L~--------------~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~------~~ll~~ 237 (980)
T 3ibv_A 181 AIRANDMSDIVSFVYEM---ML--------------AYSNAKNYGTVGLCLQVYAQWVSWININLIVN------EPCMNL 237 (980)
T ss_dssp HHHHHTHHHHHHHHHHH---HH--------------HHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHC------HHHHHH
T ss_pred HHHhccHHHHHHHHHHH---HH--------------HHhccCCHHHHHHHHHHHHHHHhhcCHHhhhc------chHHHH
Confidence 54 3444432 11 112 2577899999999999999777766532 578888
Q ss_pred HHhhcCCCCchhhHHHHHHhhccCCCcccccccCCC-CccccccCCCCeEEEEecCCCcccccchhHHHHHHHHHHcCCC
Q psy5930 527 LWRSLRSPNEQVAHVAYRVLGKFGGGNRKMMIEPQK-LDYNIRRSNGPAVVVHFPEHQKTINLSVEKAIDVAITVLKNPA 605 (2426)
Q Consensus 527 Lw~~Lkp~~~~~~~~a~RILGKLGGrNR~~L~~p~~-L~~~~~~~~~~~~~~~f~~~~~~~~lpl~~~i~~A~~~l~~~~ 605 (2426)
+++.|.. ...-..|...|.-+.+|.+. |.+ ++ +.+ .+.+.+.+.. +....
T Consensus 238 l~~~L~~--~~~r~~A~ecL~ei~~k~~~----~~~k~~--------------li~-----~l~L~~~~~~----l~~~~ 288 (980)
T 3ibv_A 238 LYSFLQI--EELRCAACETMTEIVNKKMK----PLEKLN--------------LLN-----ILNLNLFFSK----SQEQS 288 (980)
T ss_dssp HHHHTTS--HHHHHHHHHHHHHHHHSCCC----HHHHHH--------------HHH-----HHHHHHHHCC---------
T ss_pred HHHHcCC--hHHHHHHHHHHHHHHHcCCC----hhhHHH--------------HHH-----HHhHHHHHHH----Hhccc
Confidence 8888874 34566777777777766542 110 00 000 0111111111 11112
Q ss_pred CcHHHHHHHHHHHHHHHHhcccCCCChhHHHhhhcCCCCCCCCCCCCcccccCChhHHHHHHHHHHHHHHHhcc--hhHH
Q psy5930 606 VDMFYRKQGWKVVKGYIISSMNLSDNRSTIQKLFSHPSFGNTESSQGTMYKYADPTIRNTHQNALTGIFMVYLI--KELR 683 (2426)
Q Consensus 606 ~d~~yr~~A~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~f~a~~~--~~l~ 683 (2426)
.|.-+.+.=-+++.++--... .+...+.....+ ........+..++..++..... ++..
T Consensus 289 ~D~d~~~~la~L~~~~ge~l~----------~~~~~~~~~~~~---------~~~~~~~~l~~ll~~lL~~~~~~~deVs 349 (980)
T 3ibv_A 289 TDPNFDEHVAKLINAQGVELV----------AIKSDPSELSPE---------LKENCSFQLYNLFPYLIRYLSDDYDETS 349 (980)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH----------HHHTSCC--CHH---------HHHHHHHHHHHTHHHHHHHHTCSSHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHH----------HHccCccccchh---------hhhhHHHHHHHHHHHHHHHhCCCchhHH
Confidence 333333332233322111100 000000000000 0011134455555555554443 3455
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccccCCCChHH--HHHHHHHhhcCCCh-------------hhhhHHHH
Q psy5930 684 KDSLLYTVLVVRHYTLVAITQQTGPFPLYGKSALLEGTMDPLV--LIDAIAVILGHEDK-------------ELCKPGYI 748 (2426)
Q Consensus 684 ~~a~~f~~~v~rhf~l~~i~~~~~~~~~~~~~~~~~~~ld~~v--l~DAi~~~l~~~~~-------------~~~~~~~~ 748 (2426)
..+.+|....++..--. .... .......+.+ ++++++.-|..+.. +.++ -..
T Consensus 350 ~~t~~Fw~~~l~~~~~~------~~~~------~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e-~Rk 416 (980)
T 3ibv_A 350 TAVFPFLSDLLVSLRKE------SSSK------ELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQE-MRK 416 (980)
T ss_dssp HTTHHHHHHHHHHHHHH------TTSC------CCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHhc------cccc------cccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHH-HHH
Confidence 55556655443322110 0000 0000001111 45555555443321 1111 222
Q ss_pred HHHHHHHHHHHhhCCchhhcchh-hHHHHHHHHHHhc---cCchhhhhHhHHHHHHHHHHhchHHHH--------HHHHH
Q psy5930 749 ALKCIMETATCITGSIENACNLP-LMEYLAERMCNLC---YERAWYAKLGGCYAIKFFYNTMAIKWV--------YSHMF 816 (2426)
Q Consensus 749 ~l~~~~~~~~~i~~~~~~~~~~p-~~~~L~~rf~~~C---y~~~w~~K~gG~~gi~~l~~~~~~~wl--------~~~~~ 816 (2426)
.+..+.+....+ |... -+. .+..+...+...+ -...|...=+|..++..+-|.+...-. ....+
T Consensus 417 ~l~~l~d~~~~l-~~~~---~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~ 492 (980)
T 3ibv_A 417 KLKIFQDTINSI-DSSL---FSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLS 492 (980)
T ss_dssp HHHHHHHHHHHH-CHHH---HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHH
T ss_pred HHHHHHHHHHhc-ChHH---HHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHH
Confidence 233333333332 2211 111 1113333333333 246799999999998888776531000 00122
Q ss_pred HHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhhhhhhhhHHHHHHHHhh--hcCCCChHHHHHH
Q psy5930 817 VFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAETLTVQSKALSEVTNELTR--NITLPNDLLREQS 894 (2426)
Q Consensus 817 ~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~--eL~s~n~~VR~~a 894 (2426)
+++..++-. +.+.+....+. ..+++.+-| ...-... ..+.+..++..++. .+.++|+.||..|
T Consensus 493 ~ll~~ll~s--~i~~~~hp~V~---~~~~~~l~r-ys~~~~~---------~~~~l~~~L~~ll~~~gl~~~~~~V~~~a 557 (980)
T 3ibv_A 493 QILALVTTS--QVCRHPHPLVQ---LLYMEILVR-YASFFDY---------ESAAIPALIEYFVGPRGIHNTNERVRPRA 557 (980)
T ss_dssp HHHHHHHHS--STTTCCCHHHH---HHHHHHHHH-TGGGGGT---------CCTTHHHHHHHHTSTTTTTCCCTTTHHHH
T ss_pred HHHHHHHhC--CCCCCCCHHHH---HHHHHHHHH-HHHHHhc---------CchhHHHHHHHHhccccccCCChhHHHHH
Confidence 333333221 23322222222 222333322 2211111 12357788888999 9999999999999
Q ss_pred HHHHHHHHHHhCCchhhccccchhhhhccC---CC-Ccccccc----------C----chhhhHhhhhhhhhhcccCCCc
Q psy5930 895 MYLLQVFAETQGKSVVQVMEPHKDVLADII---PP-KKLLIRN----------H----SANAQIGLMEGNTFCQSLTPRL 956 (2426)
Q Consensus 895 q~~L~~lae~t~~~v~ell~p~k~~Ll~~I---~~-Kpl~lRa----------l----pf~~QIG~idaitfcl~L~p~~ 956 (2426)
-.++..+.+.++.. |.|+-+.++.-+ +. ++.+... + .|..|....||+.+.++.-+.
T Consensus 558 ~~af~~f~~~~~~~----L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~- 632 (980)
T 3ibv_A 558 WYLFYRFVKSIKKQ----VVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNL- 632 (980)
T ss_dssp HHHHHHHHHHTTTT----CSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCC-
T ss_pred HHHHHHHHHHhhHH----hhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCC-
Confidence 99999999988753 456666665333 22 2221010 0 367899999999999876431
Q ss_pred cccCcchhhHHHHHHHHHH-hhccCchhhhcCCCCCCc-cccchH--HHHHHHHHHhhhcCCch-------h---hHHHH
Q psy5930 957 FTTDMSIHEHSSFFQEITN-ICESSDQALMKLPCYKPI-SSLVPL--RKAAMRALASWHYVPNC-------S---QKIFN 1022 (2426)
Q Consensus 957 l~~~~~~~el~rll~E~l~-LadadD~~l~k~~~~k~~-~~lv~L--Rv~ci~lL~~~~~~~~~-------~---~rIi~ 1022 (2426)
+.++-..+++.++. +...=...+... ++. ....++ -..|+-.++.. +++. . .++..
T Consensus 633 -----~~e~~~~~l~~ll~pl~~~l~~~l~~~---~~~~~~~~~i~~~i~al~~lakg--f~~~~~~~~p~~~~f~~~~~ 702 (980)
T 3ibv_A 633 -----TPEEQALYCDSLINALIGKANAALSSD---LSALENIISVYCSLMAIGNFAKG--FPARGSEEVAWLASFNKASD 702 (980)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHTTS---CC--CHHHHHHHHHHHHHHHHHT--SCSCC-CCCSHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHHHHHHHHHHHHHhhc---ccCccHHHHHHHHHHHHHHHhcc--CCcccCCCCcHHHHHHHHHH
Confidence 01222333333332 110000111110 111 111111 01222223322 2221 1 15555
Q ss_pred HHHHhhc--CCCHHHHHHHHHHHHHHHccCCCChhhHHHhhHHHHhhhcCCCCCCHhHHHHHHHhhhhCCCcccHHH
Q psy5930 1023 TLFAALE--RPNPELQEAAFQAMKTFVNGSPIDLKSVYEVMKPLLLTLGDYRNLNLVTARKLSYIVQPFPSSFSEKL 1097 (2426)
Q Consensus 1023 vfFKsL~--s~s~ei~~aA~~gLk~vL~~~~~~~e~L~q~LRPiL~nLsD~k~Ltv~gLegLarLLeLL~nyFkvei 1097 (2426)
++-+.|. .++..|.+++-.+++..+.- ..+.+..-|-+++..|- ..++...+-..-+|+.-+..-||.++
T Consensus 703 ~il~~l~~~~~~~~irea~~~~~~r~i~~---lg~~~~p~lp~~i~~ll--~~~~~~e~~~fL~l~~qli~~f~~~~ 774 (980)
T 3ibv_A 703 EIFLILDRMGFNEDIRGAVRFTSGRIINV---VGPDMLPKVPQLISILL--NSIDMNELVDVLSFISQLIHIYKDNM 774 (980)
T ss_dssp HHHHHHHHSCCSHHHHHHHHHHHHHHTTT---THHHHTTTHHHHHHHHH--HHCCTTTHHHHHHHHHHHHHHTTTTS
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHH---ccHhHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655555 68899999999999988742 23333333444443333 45667777788888888888888873
No 16
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=95.06 E-value=2.6 Score=57.94 Aligned_cols=476 Identities=13% Similarity=0.071 Sum_probs=240.5
Q ss_pred chhhHHHHHHhcC--CchhHHhhhhhhhhhhccCCcchhhhccchHHHHHHHHHHhhcCCCCchhhHHHHHHhhccCCC-
Q psy5930 476 PMLMDPLVSALNG--SSTLISQGLRTLELCVDNLQPDFLYDHIQPVRADLMQALWRSLRSPNEQVAHVAYRVLGKFGGG- 552 (2426)
Q Consensus 476 ~~LM~PLV~AL~~--~~eLvsqGLRTLElcVDNLtpdfLdp~~~pV~~elm~ALw~~Lkp~~~~~~~~a~RILGKLGGr- 552 (2426)
+-.+++||..|+. +++....+.++|.-+.-+ ++.-.-+. ....+..|.+.|+..+...-..|+..|+.+...
T Consensus 191 ~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~--~~~~~~i~---~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~ 265 (780)
T 2z6g_A 191 PQMVSAIVRTMQNTNDVETARCTSGTLHNLSHH--REGLLAIF---KSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ 265 (780)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS--HHHHHHHH---HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred cChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC--chhHHHHH---HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC
Confidence 4578899999963 556766777766543222 23222222 235788999999977777888899999988642
Q ss_pred --cccccccCCCCccccccCCCCeEEEEecCCCcccccchhHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhcccCCC
Q psy5930 553 --NRKMMIEPQKLDYNIRRSNGPAVVVHFPEHQKTINLSVEKAIDVAITVLKNPAVDMFYRKQGWKVVKGYIISSMNLSD 630 (2426)
Q Consensus 553 --NR~~L~~p~~L~~~~~~~~~~~~~~~f~~~~~~~~lpl~~~i~~A~~~l~~~~~d~~yr~~A~~~l~~~l~~~l~~~~ 630 (2426)
+|+.+.+ ..+|...++.|.+ .+...+..|...+..+...
T Consensus 266 ~~~~~~v~~-------------------------------~g~v~~Lv~lL~~--~~~~v~~~a~~aL~~La~~------ 306 (780)
T 2z6g_A 266 EGAKMAVRL-------------------------------AGGLQKMVALLNK--TNVKFLAITTDCLQILAYG------ 306 (780)
T ss_dssp TTHHHHHHH-------------------------------TTHHHHHHHGGGC--CCHHHHHHHHHHHHHHHTT------
T ss_pred hhhHHHHHH-------------------------------cCCHHHHHHHHhc--CCHHHHHHHHHHHHHHhcC------
Confidence 2222111 1356666677765 3444566666666532210
Q ss_pred ChhHHHhhhcCCCCCCCCCCCCcccccCChhHHHHHHHHHHHHHHHhcchhHHHhHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy5930 631 NRSTIQKLFSHPSFGNTESSQGTMYKYADPTIRNTHQNALTGIFMVYLIKELRKDSLLYTVLVVRHYTLVAITQQTGPFP 710 (2426)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~f~a~~~~~l~~~a~~f~~~v~rhf~l~~i~~~~~~~~ 710 (2426)
+......... ..... .|..++.....+..+..+...+..++.. +.
T Consensus 307 ~~e~~~~i~~----------------------~~~i~-~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~-----------~~- 351 (780)
T 2z6g_A 307 NQESKLIILA----------------------SGGPQ-ALVNIMRTYTYEKLLWTTSRVLKVLSVC-----------SS- 351 (780)
T ss_dssp CHHHHHHHHT----------------------TTHHH-HHHHHHTTCCCHHHHHHHHHHHHHHHTS-----------TT-
T ss_pred ChHHHHHHHH----------------------cCCHH-HHHHHHhcCCHHHHHHHHHHHHHHhhcC-----------hH-
Confidence 0000000000 00000 1111111111122222222222222110 00
Q ss_pred CCcccccccCCCChHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHhhCCchhhcchhhHHHHHHHHHHhccCchhh
Q psy5930 711 LYGKSALLEGTMDPLVLIDAIAVILGHEDKELCKPGYIALKCIMETATCITGSIENACNLPLMEYLAERMCNLCYERAWY 790 (2426)
Q Consensus 711 ~~~~~~~~~~~ld~~vl~DAi~~~l~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~p~~~~L~~rf~~~Cy~~~w~ 790 (2426)
....+-..-.+.+++..|.+.+.+++..+..++..+.... .. ......+++.++.+...+.|.
T Consensus 352 -------~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~------~~----~~~~~~~i~~Lv~lL~~~d~~ 414 (780)
T 2z6g_A 352 -------NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA------TK----QEGMEGLLGTLVQLLGSDDIN 414 (780)
T ss_dssp -------HHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTC------TT----CSCCHHHHHHHHHHTTCSCHH
T ss_pred -------HHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccc------hh----hhhhhhHHHHHHHHHcCCCHH
Confidence 0000000015678888888887777777766666554321 11 111245667777777888999
Q ss_pred hhHhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhhhhhhh
Q psy5930 791 AKLGGCYAIKFFYNTMAIKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAETLTVQSK 870 (2426)
Q Consensus 791 ~K~gG~~gi~~l~~~~~~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~~ 870 (2426)
.+..+|.+|..|...-+...-.-.+...+..|+..|.+... +..+...|-.+|-.| +... .+ . + ..+..
T Consensus 415 vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~--~~~v~~~Al~aL~nL---~~~~--~~-~-~--~~~~~ 483 (780)
T 2z6g_A 415 VVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD--REDITEPAICALRHL---TSRH--QD-A-E--MAQNA 483 (780)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTT--CHHHHHHHHHHHHHT---TSSS--TT-H-H--HHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCC--HHHHHHHHHHHHHHH---HhcC--ch-H-H--HHHHH
Confidence 99999999988876543222111224567777777765221 113333443333322 2111 11 0 0 00000
Q ss_pred -hHHHHHHHHhhhcCCCCh-HHHHHHHHHHHHHHHHhCCchhhccccchhhhhccCCCCccccccCchhhhHhhhhhhhh
Q psy5930 871 -ALSEVTNELTRNITLPND-LLREQSMYLLQVFAETQGKSVVQVMEPHKDVLADIIPPKKLLIRNHSANAQIGLMEGNTF 948 (2426)
Q Consensus 871 -~~~~~~~~lv~eL~s~n~-~VR~~aq~~L~~lae~t~~~v~ell~p~k~~Ll~~I~~Kpl~lRalpf~~QIG~idaitf 948 (2426)
.-...+..|+.-|.+++. .||+.|-.+|..++. +.+ .+..+. +-|.+..+.-
T Consensus 484 v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~--~~~-------~~~~i~-----------------~~g~i~~Lv~ 537 (780)
T 2z6g_A 484 VRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL--CPA-------NHAPLR-----------------EQGAIPRLVQ 537 (780)
T ss_dssp HHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHS--SHH-------HHHHHH-----------------HTTHHHHHHH
T ss_pred HHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhc--CHH-------HHHHHH-----------------HCCCHHHHHH
Confidence 011235556677777776 899998888888874 110 011110 1111111110
Q ss_pred hcccCCCccccCcchhhHHHHHHHHHHhhccCchhhhcCCCCCCccccchHHHHHHHHHHhhhcCCchhh-----HHHHH
Q psy5930 949 CQSLTPRLFTTDMSIHEHSSFFQEITNICESSDQALMKLPCYKPISSLVPLRKAAMRALASWHYVPNCSQ-----KIFNT 1023 (2426)
Q Consensus 949 cl~L~p~~l~~~~~~~el~rll~E~l~LadadD~~l~k~~~~k~~~~lv~LRv~ci~lL~~~~~~~~~~~-----rIi~v 1023 (2426)
.+.-. + .+..+ .-+++++. . .+.....--.++.+|..+|...-..++.+. .++..
T Consensus 538 lL~~~------~---~~~~~--~aa~al~n--------q-~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~ 597 (780)
T 2z6g_A 538 LLVRA------H---QDTQR--RTSMGGTQ--------Q-QFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPL 597 (780)
T ss_dssp HHHHH------H---HHHHH--TTC---------------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHH
T ss_pred HHHhc------c---hhHHH--HHhhcccc--------c-hhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHH
Confidence 00000 0 00000 00001110 0 011111223356666666665443443333 45778
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHccCCCChhhHHHh-hHHHHhhhcCCCCCCH--hHHHHHHHhhhhCCCcccHHHHHH
Q psy5930 1024 LFAALERPNPELQEAAFQAMKTFVNGSPIDLKSVYEV-MKPLLLTLGDYRNLNL--VTARKLSYIVQPFPSSFSEKLCEQ 1100 (2426)
Q Consensus 1024 fFKsL~s~s~ei~~aA~~gLk~vL~~~~~~~e~L~q~-LRPiL~nLsD~k~Ltv--~gLegLarLLeLL~nyFkveiG~K 1100 (2426)
+.+-|.+.+++|+.+|-.+|...... +-..+.+.+. .-|.|+.|.++++-.| ..+..|.++.+--+.-++..+|.+
T Consensus 598 Lv~lL~~~~~~v~~~a~~aL~~L~~~-~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~~~~~~~l~~~ 676 (780)
T 2z6g_A 598 FVQLLYSPIENIQRVAAGVLCELAQD-KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVE 676 (780)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSCTTHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcC-HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHhhhccccHH
Confidence 89999999999999999999987533 2224445554 5566677777765555 567788888887776677767777
Q ss_pred HHHHH
Q psy5930 1101 LLVNL 1105 (2426)
Q Consensus 1101 LLdHL 1105 (2426)
++..+
T Consensus 677 ll~~l 681 (780)
T 2z6g_A 677 LTSSL 681 (780)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 76655
No 17
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=95.01 E-value=0.36 Score=56.32 Aligned_cols=154 Identities=12% Similarity=0.111 Sum_probs=114.1
Q ss_pred HHHHHHHHhhc-CCChhhhhHHHHHHHHHHHHHHHhhCCchhhcchhhHHHHHHHHHHhccCchhhhhHhHHHHHHHHHH
Q psy5930 726 VLIDAIAVILG-HEDKELCKPGYIALKCIMETATCITGSIENACNLPLMEYLAERMCNLCYERAWYAKLGGCYAIKFFYN 804 (2426)
Q Consensus 726 vl~DAi~~~l~-~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~p~~~~L~~rf~~~Cy~~~w~~K~gG~~gi~~l~~ 804 (2426)
-+++++...|. +.+..++..|..++..+.... |. .--|+...++..++.++-+..-..+.+++.++..+++
T Consensus 56 ~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l----~~----~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~ 127 (242)
T 2qk2_A 56 ALVSALKKVITKDSNVVLVAMAGKCLALLAKGL----AK----RFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYA 127 (242)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH----GG----GGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH----hh----hHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 37899999996 999999999999999887532 22 1136677899999999999999999999999999999
Q ss_pred hchHHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhhhhhhhhHHHHHHHHhhhcC
Q psy5930 805 TMAIKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAETLTVQSKALSEVTNELTRNIT 884 (2426)
Q Consensus 805 ~~~~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~eL~ 884 (2426)
..+.. .++..++..++|- ...++..+-..+..++.... +. ......+..++..++.-+.
T Consensus 128 ~~~~~-------~ll~~l~~~l~~~----~~~vr~~~l~~l~~~l~~~~----~~------~~~~~~l~~l~p~l~~~l~ 186 (242)
T 2qk2_A 128 STSLE-------AQQESIVESLSNK----NPSVKSETALFIARALTRTQ----PT------ALNKKLLKLLTTSLVKTLN 186 (242)
T ss_dssp TSCHH-------HHHHHHHHHTTCS----CHHHHHHHHHHHHHHHTTCC----GG------GCCHHHHHHHHHHHHHHHT
T ss_pred cCCHH-------HHHHHHHHHHcCC----ChHHHHHHHHHHHHHHHHcC----CC------CccHHHHHHHHHHHHHHhc
Confidence 87643 4556666667653 23445555555544443221 10 0112357778888888899
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCc
Q psy5930 885 LPNDLLREQSMYLLQVFAETQGKS 908 (2426)
Q Consensus 885 s~n~~VR~~aq~~L~~lae~t~~~ 908 (2426)
+++..||++|..++..++...|..
T Consensus 187 D~~~~VR~~A~~~l~~l~~~vg~~ 210 (242)
T 2qk2_A 187 EPDPTVRDSSAEALGTLIKLMGDK 210 (242)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHCHH
T ss_pred CCChHHHHHHHHHHHHHHHHcCHH
Confidence 999999999999999999999853
No 18
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=94.09 E-value=12 Score=49.88 Aligned_cols=290 Identities=12% Similarity=0.038 Sum_probs=149.6
Q ss_pred HHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHhhCCchhhcchhhHHHHHHHHHHhccCchhhhhHhHHHHHHHHHHhc
Q psy5930 727 LIDAIAVILGHEDKELCKPGYIALKCIMETATCITGSIENACNLPLMEYLAERMCNLCYERAWYAKLGGCYAIKFFYNTM 806 (2426)
Q Consensus 727 l~DAi~~~l~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~p~~~~L~~rf~~~Cy~~~w~~K~gG~~gi~~l~~~~ 806 (2426)
.+++++..+.+.+.+++..+..++..+.... .. ......+.+.++++...+.+..+..+|..+..|...-
T Consensus 225 ~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~-----~~-----~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~ 294 (644)
T 2z6h_A 225 GMQALGLHLTDPSQRLVQNCLWTLRNLSDAA-----TK-----QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 294 (644)
T ss_dssp HHHHHHTTTTCSCHHHHHHHHHHHHHHGGGC-----TT-----CCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHhhcc-----hh-----hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 5778888888888888877777776664311 11 1122356677777777888888888888888887654
Q ss_pred h--HHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhhhhhhh-hHHHHHHHHhhhc
Q psy5930 807 A--IKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAETLTVQSK-ALSEVTNELTRNI 883 (2426)
Q Consensus 807 ~--~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~lv~eL 883 (2426)
+ ...+.+ ...+..|+..+.+.+.. ..+...|-.+|-.+ +... ++ . + ..+.. .-...+..|+.-|
T Consensus 295 ~~~~~~v~~--~g~v~~Lv~lL~~~~~~--~~v~~~a~~aL~nL---~~~~--~~-~-~--~~q~~v~~~~~l~~L~~lL 361 (644)
T 2z6h_A 295 YKNKMMVCQ--VGGIEALVRTVLRAGDR--EDITEPAICALRHL---TSRH--QE-A-E--MAQNAVRLHYGLPVVVKLL 361 (644)
T ss_dssp HHHHHHHHH--TTHHHHHHHHHHHHTTC--HHHHHHHHHHHHHH---TSSS--TT-H-H--HHHHHHHHTTHHHHHHHTT
T ss_pred HHHHHHHHH--cCCHHHHHHHHHccCCc--HHHHHHHHHHHHHH---hcCC--ch-H-H--HHHHHHHHccChHHHHHHh
Confidence 2 233333 45788888888764321 13333444344333 2111 11 0 0 01110 0123466677777
Q ss_pred CCCC-hHHHHHHHHHHHHHHHHhCCchhhccccchhhhhccCCCCccccccCchhhhHhhhhhhhhhcccCCCccccCcc
Q psy5930 884 TLPN-DLLREQSMYLLQVFAETQGKSVVQVMEPHKDVLADIIPPKKLLIRNHSANAQIGLMEGNTFCQSLTPRLFTTDMS 962 (2426)
Q Consensus 884 ~s~n-~~VR~~aq~~L~~lae~t~~~v~ell~p~k~~Ll~~I~~Kpl~lRalpf~~QIG~idaitfcl~L~p~~l~~~~~ 962 (2426)
.+++ ..||+.|-.+|.-++. +.+ .+..+ .+-|.+..+.-++.-..
T Consensus 362 ~~~~~~~v~~~a~~~L~nLa~--~~~-------~~~~i-----------------~~~~~i~~Lv~lL~~~~-------- 407 (644)
T 2z6h_A 362 HPPSHWPLIKATVGLIRNLAL--CPA-------NHAPL-----------------REQGAIPRLVQLLVRAH-------- 407 (644)
T ss_dssp STTCCHHHHHHHHHHHHHHTT--SGG-------GHHHH-----------------HHTTHHHHHHHHHHHHH--------
T ss_pred CccCchHHHHHHHHHHHHHcc--CHH-------HHHHH-----------------HHcCCHHHHHHHHhccc--------
Confidence 7776 5899988887777663 100 00110 11122211111111000
Q ss_pred hhhHHHHHHHHHHhhccCchhhhcCCCCCCccccchHHHHHHHHHHhhhcCCchhh-----HHHHHHHHhhcCCCHHHHH
Q psy5930 963 IHEHSSFFQEITNICESSDQALMKLPCYKPISSLVPLRKAAMRALASWHYVPNCSQ-----KIFNTLFAALERPNPELQE 1037 (2426)
Q Consensus 963 ~~el~rll~E~l~LadadD~~l~k~~~~k~~~~lv~LRv~ci~lL~~~~~~~~~~~-----rIi~vfFKsL~s~s~ei~~ 1037 (2426)
.+..+ .-+.+++.. .+-....--.++..|..+|...-..++.+. ..+..+.+-|.+.+++|+.
T Consensus 408 -~~vr~--~a~~al~n~---------~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~ 475 (644)
T 2z6h_A 408 -QDTQR--RTSMGGTQQ---------QFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQR 475 (644)
T ss_dssp -HHHTT--C-------------------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHH
T ss_pred -hhhhh--Hhhhccccc---------hhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHH
Confidence 00000 000111110 011111223566777777775555554443 4577889999999999999
Q ss_pred HHHHHHHHHHccCCCChhhHHHh-hHHHHhhhcCCCCCCH--hHHHHHHHhh
Q psy5930 1038 AAFQAMKTFVNGSPIDLKSVYEV-MKPLLLTLGDYRNLNL--VTARKLSYIV 1086 (2426)
Q Consensus 1038 aA~~gLk~vL~~~~~~~e~L~q~-LRPiL~nLsD~k~Ltv--~gLegLarLL 1086 (2426)
+|-.+|...... +-..+.+.+. --+.|..|.++.+-.+ ....+|.+|.
T Consensus 476 ~a~~aL~~l~~~-~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~ 526 (644)
T 2z6h_A 476 VAAGVLCELAQD-KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 526 (644)
T ss_dssp HHHHHHHHHHTS-HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcC-HHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 999999886533 2223344443 4445556655543222 3344444443
No 19
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=93.57 E-value=9.3 Score=50.64 Aligned_cols=287 Identities=11% Similarity=0.086 Sum_probs=156.7
Q ss_pred HHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHhhCCchhhcchhhHHHHHHHHHHhccCchhhhhHhHHHHHHHHHHh
Q psy5930 726 VLIDAIAVILGHEDKELCKPGYIALKCIMETATCITGSIENACNLPLMEYLAERMCNLCYERAWYAKLGGCYAIKFFYNT 805 (2426)
Q Consensus 726 vl~DAi~~~l~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~p~~~~L~~rf~~~Cy~~~w~~K~gG~~gi~~l~~~ 805 (2426)
.+++++..+|.+.++.+|+.|..|+..+++. +.+.. +- ..+.+.+..+..++....+.+++.++.-+.+.
T Consensus 121 ~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~------~p~~~---~~-~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~ 190 (591)
T 2vgl_B 121 YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDI------NAQMV---ED-QGFLDSLRDLIADSNPMVVANAVAALSEISES 190 (591)
T ss_dssp HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHS------SCCCH---HH-HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHhh------Chhhc---cc-ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhh
Confidence 3778899999999999999999999888772 22211 10 24678888888898888888888888877665
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhhhhhhhhHHHHHHHHhhhcCC
Q psy5930 806 MAIKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAETLTVQSKALSEVTNELTRNITL 885 (2426)
Q Consensus 806 ~~~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~eL~s 885 (2426)
-+..+..+.....++.|+-.+.|..+ -++-.+.+++...... + ......++..+..-+.|
T Consensus 191 ~~~~~~~~l~~~~~~~Ll~~l~~~~~--------~~q~~il~~l~~l~~~---~---------~~~~~~~l~~l~~~l~~ 250 (591)
T 2vgl_B 191 HPNSNLLDLNPQNINKLLTALNECTE--------WGQIFILDCLSNYNPK---D---------DREAQSICERVTPRLSH 250 (591)
T ss_dssp CCSCCSCCCHHHHHHHHHHHHHHCCH--------HHHHHHHHHHHTSCCC---S---------HHHHHHHHHHHTTCSCS
T ss_pred CCCccchhccHHHHHHHHHcCCCCCc--------hHHHHHHHHHHHhCCC---C---------hHHHHHHHHHHHHHHcC
Confidence 43211111112334444444444321 1222333444333311 1 01133456677777889
Q ss_pred CChHHHHHHHHHHHHHHHHh--CCchhhccccchhhhhccCCCCccccccCchhhhHhhhhhhhhhcccCCCccc-----
Q psy5930 886 PNDLLREQSMYLLQVFAETQ--GKSVVQVMEPHKDVLADIIPPKKLLIRNHSANAQIGLMEGNTFCQSLTPRLFT----- 958 (2426)
Q Consensus 886 ~n~~VR~~aq~~L~~lae~t--~~~v~ell~p~k~~Ll~~I~~Kpl~lRalpf~~QIG~idaitfcl~L~p~~l~----- 958 (2426)
.|..||-.|-+++..++... +.+. +...-+.+..++.. | +. -.-+.|.--++++.......|..+.
T Consensus 251 ~~~~V~~ea~~~i~~l~~~~~~~~~~---~~~~~~~~~~~L~~--L-~~-~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~ 323 (591)
T 2vgl_B 251 ANSAVVLSAVKVLMKFLELLPKDSDY---YNMLLKKLAPPLVT--L-LS-GEPEVQYVALRNINLIVQKRPEILKQEIKV 323 (591)
T ss_dssp STTHHHHHHHHHHHHSCCSCCBTTBS---HHHHHHHTHHHHHH--H-TT-SCHHHHHHHHHHHHHHHHHCCSTTTTCTTT
T ss_pred CChHHHHHHHHHHHHHhhccCCCHHH---HHHHHHHHHHHHHH--H-hc-CCccHHHHHHHHHHHHHHhChHHHHHHHHh
Confidence 99999998888887765422 1111 11111111111000 0 00 0123455555555554444444332
Q ss_pred ----cCcchhhHHHHHHHH-HHhhccCchh-h-hcCCCCCCccccchHHHHHHHHHHh-hhcCCchhhHHHHHHHHhhcC
Q psy5930 959 ----TDMSIHEHSSFFQEI-TNICESSDQA-L-MKLPCYKPISSLVPLRKAAMRALAS-WHYVPNCSQKIFNTLFAALER 1030 (2426)
Q Consensus 959 ----~~~~~~el~rll~E~-l~LadadD~~-l-~k~~~~k~~~~lv~LRv~ci~lL~~-~~~~~~~~~rIi~vfFKsL~s 1030 (2426)
.+++ ...++.--++ ..+++.+... + ....+|-.. .=...|..+++.+.. |...+.....++.++.+-|..
T Consensus 324 ~~~~~~d~-~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~-~d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~ 401 (591)
T 2vgl_B 324 FFVKYNDP-IYVKLEKLDIMIRLASQANIAQVLAELKEYATE-VDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQT 401 (591)
T ss_dssp TSCCTTSC-HHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTS-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred heeccCCh-HHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHcc
Confidence 1322 2222222222 2344333211 1 111111111 112477777777663 445565567899999999999
Q ss_pred CCHHHHHHHHHHHHHHHccCC
Q psy5930 1031 PNPELQEAAFQAMKTFVNGSP 1051 (2426)
Q Consensus 1031 ~s~ei~~aA~~gLk~vL~~~~ 1051 (2426)
....+.+.+-.++++.+++..
T Consensus 402 ~~~~v~~e~i~~l~~ii~~~p 422 (591)
T 2vgl_B 402 KVNYVVQEAIVVIRDIFRKYP 422 (591)
T ss_dssp CCHHHHHHHHHHHHHHHHHSC
T ss_pred cchHHHHHHHHHHHHHHHHCc
Confidence 999999988889998886543
No 20
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=92.20 E-value=21 Score=45.82 Aligned_cols=277 Identities=12% Similarity=0.045 Sum_probs=144.7
Q ss_pred HHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHhhCCchhhcchhhHHHHHHHHHHhccCchhhhhHhHHHHHHHHHHhc
Q psy5930 727 LIDAIAVILGHEDKELCKPGYIALKCIMETATCITGSIENACNLPLMEYLAERMCNLCYERAWYAKLGGCYAIKFFYNTM 806 (2426)
Q Consensus 727 l~DAi~~~l~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~p~~~~L~~rf~~~Cy~~~w~~K~gG~~gi~~l~~~~ 806 (2426)
.+++++..+.+.+.+++..+..++..+... .... .......+.++++.+.+....+..+|..+..|...-
T Consensus 228 ~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~------~~~~----~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 297 (529)
T 1jdh_A 228 GMQALGLHLTDPSQRLVQNCLWTLRNLSDA------ATKQ----EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 297 (529)
T ss_dssp HHHHHHTTTTSSCHHHHHHHHHHHHHHHTT------CTTC----SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHhCCChHHHHHHHHHHHHHhcC------Chhh----HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 678888899888888888777777665432 1111 112456677777778888888888888888886643
Q ss_pred h--HHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhhhhhhhh-HHHHHHHHhhhc
Q psy5930 807 A--IKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAETLTVQSKA-LSEVTNELTRNI 883 (2426)
Q Consensus 807 ~--~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~lv~eL 883 (2426)
+ ...+. +...+..|+..+.+.+.. ..+...|-.+|..+ +... ++ .+ ..+..- -...+..|+.-|
T Consensus 298 ~~~~~~~~--~~~~v~~L~~ll~~~~~~--~~v~~~a~~~L~nl---~~~~--~~-~~---~~~~~i~~~~~i~~L~~lL 364 (529)
T 1jdh_A 298 YKNKMMVC--QVGGIEALVRTVLRAGDR--EDITEPAICALRHL---TSRH--QE-AE---MAQNAVRLHYGLPVVVKLL 364 (529)
T ss_dssp HHHHHHHH--HTTHHHHHHHHHHHHTTC--HHHHHHHHHHHHHH---TSSS--TT-HH---HHHHHHHHTTCHHHHHHTT
T ss_pred HHHHHHHH--HcCChHHHHHHHHccCCH--HHHHHHHHHHHHHH---HcCC--ch-HH---HHHHHHHHcCChhHHHHHh
Confidence 2 33333 345677888877653321 22333443333333 2211 11 00 001000 112355667777
Q ss_pred CCCCh-HHHHHHHHHHHHHHHHhCCchhhccccchhhhhccCCCCccccccCchhhhHhhhhhhhhhcccCCCccccCcc
Q psy5930 884 TLPND-LLREQSMYLLQVFAETQGKSVVQVMEPHKDVLADIIPPKKLLIRNHSANAQIGLMEGNTFCQSLTPRLFTTDMS 962 (2426)
Q Consensus 884 ~s~n~-~VR~~aq~~L~~lae~t~~~v~ell~p~k~~Ll~~I~~Kpl~lRalpf~~QIG~idaitfcl~L~p~~l~~~~~ 962 (2426)
.+++. .||+.|-.+|..++. +.+ .++.+ .+-|.+..+.-++.-. +
T Consensus 365 ~~~~~~~v~~~a~~~l~nl~~--~~~-------~~~~~-----------------~~~~~i~~L~~ll~~~------~-- 410 (529)
T 1jdh_A 365 HPPSHWPLIKATVGLIRNLAL--CPA-------NHAPL-----------------REQGAIPRLVQLLVRA------H-- 410 (529)
T ss_dssp STTCCHHHHHHHHHHHHHHTT--SGG-------GHHHH-----------------HHTTHHHHHHHHHHHH------H--
T ss_pred ccccchHHHHHHHHHHHHHhc--Chh-------hhHHH-----------------HHcCCHHHHHHHHHHH------h--
Confidence 77774 899888888777763 211 01111 1112221111111100 0
Q ss_pred hhhHHHHHHHHHHhhccCchhhhcCCCCCCccccchHHHHHHHHHHhhhcCCchhh-----HHHHHHHHhhcCCCHHHHH
Q psy5930 963 IHEHSSFFQEITNICESSDQALMKLPCYKPISSLVPLRKAAMRALASWHYVPNCSQ-----KIFNTLFAALERPNPELQE 1037 (2426)
Q Consensus 963 ~~el~rll~E~l~LadadD~~l~k~~~~k~~~~lv~LRv~ci~lL~~~~~~~~~~~-----rIi~vfFKsL~s~s~ei~~ 1037 (2426)
.+..+ .-+++++. .++.....-..++..|+.+|......++.+. .++..+.+-|.+.+++|..
T Consensus 411 -~~v~~--~a~~~l~n---------~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~ 478 (529)
T 1jdh_A 411 -QDTQR--RTSMGGTQ---------QQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQR 478 (529)
T ss_dssp -HHHC----------------------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHH
T ss_pred -HHHHH--HHhcccCc---------hhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHH
Confidence 00000 00011111 0011111123355566666665555555443 4567889999999999999
Q ss_pred HHHHHHHHHHccCCCChhhHHHh-hHHHHhhhcCCCC
Q psy5930 1038 AAFQAMKTFVNGSPIDLKSVYEV-MKPLLLTLGDYRN 1073 (2426)
Q Consensus 1038 aA~~gLk~vL~~~~~~~e~L~q~-LRPiL~nLsD~k~ 1073 (2426)
+|-.+|...... +...+.+.+. ..|.|+.|.++.+
T Consensus 479 ~a~~~l~~l~~~-~~~~~~i~~~~~~~~L~~l~~~~~ 514 (529)
T 1jdh_A 479 VAAGVLCELAQD-KEAAEAIEAEGATAPLTELLHSRN 514 (529)
T ss_dssp HHHHHHHHHTTS-HHHHHHHHHTTCHHHHHHGGGCSS
T ss_pred HHHHHHHHHhcC-HHHHHHHHHcCChHHHHHHhcCCC
Confidence 999999985432 2223444443 5566777776653
No 21
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=91.78 E-value=2.3 Score=56.48 Aligned_cols=336 Identities=15% Similarity=0.133 Sum_probs=176.4
Q ss_pred HHHHhhcCCChhhhhHHHHHHHHHHHHHHHhhCCchhhcchhhHHHHHHHHHHhccCchhhhhHhHHHHHHHHHHhchHH
Q psy5930 730 AIAVILGHEDKELCKPGYIALKCIMETATCITGSIENACNLPLMEYLAERMCNLCYERAWYAKLGGCYAIKFFYNTMAIK 809 (2426)
Q Consensus 730 Ai~~~l~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~p~~~~L~~rf~~~Cy~~~w~~K~gG~~gi~~l~~~~~~~ 809 (2426)
.++..+++.+.++++.|..++..+.+. ..+. ..-+...+...+-++..+.+..+ +.+|..--...
T Consensus 53 ~vi~l~~s~~~~~Krl~yl~l~~~~~~------~~e~------~~l~~n~l~kdL~~~n~~ir~~A---L~~L~~i~~~~ 117 (591)
T 2vgl_B 53 DVVNCMQTDNLELKKLVYLYLMNYAKS------QPDM------AIMAVNSFVKDCEDPNPLIRALA---VRTMGCIRVDK 117 (591)
T ss_dssp HHHHTTSSSCHHHHHHHHHHHHHHHHH------SHHH------HHTTHHHHGGGSSSSSHHHHHHH---HHHHHTCCSGG
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHccc------CchH------HHHHHHHHHHHcCCCCHHHHHHH---HHHHHcCChHH
Confidence 466789999999999999999887663 1111 11123556666667776666443 44443322211
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhhhhhhhhHHHHHHHHhhhcCCCChH
Q psy5930 810 WVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAETLTVQSKALSEVTNELTRNITLPNDL 889 (2426)
Q Consensus 810 wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~eL~s~n~~ 889 (2426)
..-.++.++.-.+.|- ...++..|-.++.++.+. . ++. .. -...+..+..-|.+++..
T Consensus 118 ----~~~~l~~~l~~~L~d~----~~~VRk~A~~al~~i~~~---~--p~~------~~---~~~~~~~l~~lL~d~d~~ 175 (591)
T 2vgl_B 118 ----ITEYLCEPLRKCLKDE----DPYVRKTAAVCVAKLHDI---N--AQM------VE---DQGFLDSLRDLIADSNPM 175 (591)
T ss_dssp ----GHHHHHHHHHHHSSCS----CHHHHHHHHHHHHHHHHS---S--CCC------HH---HHHHHHHHHHTTSCSCHH
T ss_pred ----HHHHHHHHHHHHcCCC----ChHHHHHHHHHHHHHHhh---C--hhh------cc---cccHHHHHHHHhCCCChh
Confidence 1123344455555543 455666777777666652 1 110 11 123566677778899999
Q ss_pred HHHHHHHHHHHHHHHhCCc-hhhccccchhhhhccCCCCccccccCchhhhHhhhhhhhhhcccCCCccccCcchhhHHH
Q psy5930 890 LREQSMYLLQVFAETQGKS-VVQVMEPHKDVLADIIPPKKLLIRNHSANAQIGLMEGNTFCQSLTPRLFTTDMSIHEHSS 968 (2426)
Q Consensus 890 VR~~aq~~L~~lae~t~~~-v~ell~p~k~~Ll~~I~~Kpl~lRalpf~~QIG~idaitfcl~L~p~~l~~~~~~~el~r 968 (2426)
||..|-.+|..+++..... ...+..+.-..|+.-+ ..-+-..|+..++++.... |. + .++...
T Consensus 176 V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l-------~~~~~~~q~~il~~l~~l~---~~----~--~~~~~~ 239 (591)
T 2vgl_B 176 VVANAVAALSEISESHPNSNLLDLNPQNINKLLTAL-------NECTEWGQIFILDCLSNYN---PK----D--DREAQS 239 (591)
T ss_dssp HHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHH-------HHCCHHHHHHHHHHHHTSC---CC----S--HHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcC-------CCCCchHHHHHHHHHHHhC---CC----C--hHHHHH
Confidence 9999999998887643321 1112111122222111 0112236788887776543 21 1 122222
Q ss_pred HHHHHHHhhccCchhhhcCCCCCCccccchHHHHHHHHHHhhhc----CCchhh----HHHHHHHHhhcCCCHHHHHHHH
Q psy5930 969 FFQEITNICESSDQALMKLPCYKPISSLVPLRKAAMRALASWHY----VPNCSQ----KIFNTLFAALERPNPELQEAAF 1040 (2426)
Q Consensus 969 ll~E~l~LadadD~~l~k~~~~k~~~~lv~LRv~ci~lL~~~~~----~~~~~~----rIi~vfFKsL~s~s~ei~~aA~ 1040 (2426)
++.-++.+-. +.. -..|..|++++..... .++..+ ++...+. .|.++++++.-+|-
T Consensus 240 ~l~~l~~~l~-------------~~~--~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~-~L~~~d~~vr~~aL 303 (591)
T 2vgl_B 240 ICERVTPRLS-------------HAN--SAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLV-TLLSGEPEVQYVAL 303 (591)
T ss_dssp HHHHHTTCSC-------------SST--THHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHH-HHTTSCHHHHHHHH
T ss_pred HHHHHHHHHc-------------CCC--hHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH-HHhcCCccHHHHHH
Confidence 2222222211 111 2477788888876432 344322 5555555 45678999999999
Q ss_pred HHHHHHHccCCCChhhHHHhhHHHHhhhcCCCCCCHhHHHHHHHhhhhCCCcccHHHHHHHHHHHHHhhhhhhhhhcCCC
Q psy5930 1041 QAMKTFVNGSPIDLKSVYEVMKPLLLTLGDYRNLNLVTARKLSYIVQPFPSSFSEKLCEQLLVNLKNLFENIVAQKENPP 1120 (2426)
Q Consensus 1041 ~gLk~vL~~~~~~~e~L~q~LRPiL~nLsD~k~Ltv~gLegLarLLeLL~nyFkveiG~KLLdHLk~~~e~~~~~~~~~~ 1120 (2426)
.+|..+.+.. |+.++..++.++-.+.|+... -.++|.-|..+-+. =|+ +.++..|..+++.
T Consensus 304 ~~l~~i~~~~---p~~~~~~~~~~~~~~~d~~~I---r~~al~~L~~l~~~-~nv---~~iv~~L~~~l~~--------- 364 (591)
T 2vgl_B 304 RNINLIVQKR---PEILKQEIKVFFVKYNDPIYV---KLEKLDIMIRLASQ-ANI---AQVLAELKEYATE--------- 364 (591)
T ss_dssp HHHHHHHHHC---CSTTTTCTTTTSCCTTSCHHH---HHHHHHHHHHTCCS-STH---HHHHHHHHHHTTS---------
T ss_pred HHHHHHHHhC---hHHHHHHHHhheeccCChHHH---HHHHHHHHHHHCCh-hhH---HHHHHHHHHHHhc---------
Confidence 9999888653 334444455554333443111 12333333333222 233 2344444444321
Q ss_pred CCCcc--hhHHHHHHHhhccCchhHHhhHHHHHHHH
Q psy5930 1121 KNSET--EKIIVVIIGIFKESPAAKAQFIEPLISLI 1154 (2426)
Q Consensus 1121 ~~~~~--~kii~aIinIFHLLP~aa~~Fle~Lv~~V 1154 (2426)
...+ .+.+.+|-++.--.|+.+..+++.|+..+
T Consensus 365 -~d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll 399 (591)
T 2vgl_B 365 -VDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLI 399 (591)
T ss_dssp -SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHH
Confidence 0112 24455676766666777777777766553
No 22
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=91.62 E-value=63 Score=45.76 Aligned_cols=153 Identities=12% Similarity=0.035 Sum_probs=89.7
Q ss_pred CchhhhhHhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhcCCCcc-cchhHHHHHHHHHHHHHHHHcCCCCCCCchhh
Q psy5930 786 ERAWYAKLGGCYAIKFFYNTMAIKWVYSHMFVFVKALLFVMMDLTGE-VSSGAIDEARRNLKQLIVLCATPIKEPVDAET 864 (2426)
Q Consensus 786 ~~~w~~K~gG~~gi~~l~~~~~~~wl~~~~~~ivraLlfvlkD~p~e-~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~ 864 (2426)
+..|..+-|+|.++..+.+.+...=-..+...++..|+- +.++... .+...+ +..++. ++.+...-.
T Consensus 464 ~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~-l~~~~~~~~~~~~v--~~~~~~-~lgry~~~~-------- 531 (1049)
T 3m1i_C 464 EWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLD-LTVKKRGKDNKAVV--ASDIMY-VVGQYPRFL-------- 531 (1049)
T ss_dssp SCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHH-HTTSSCSHHHHHHH--HHHHHH-HHHHCHHHH--------
T ss_pred CCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHH-HHhhhccccchHHH--HHHHHH-HHHHHHHHH--------
Confidence 467999999999999988776432112334556665553 2222110 111111 111222 222111000
Q ss_pred hhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhCCchh----hccccchhhhhccCCCCccccccCchhhhH
Q psy5930 865 LTVQSKALSEVTNELTRNITLPNDLLREQSMYLLQVFAETQGKSVV----QVMEPHKDVLADIIPPKKLLIRNHSANAQI 940 (2426)
Q Consensus 865 ~~~~~~~~~~~~~~lv~eL~s~n~~VR~~aq~~L~~lae~t~~~v~----ell~p~k~~Ll~~I~~Kpl~lRalpf~~QI 940 (2426)
....+.+..++..++.-+.++++.||..|-.++..+++..+..+. .-++||-+.+++-+.. .+..++-..+.
T Consensus 532 -~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~---~~~~~~~~~~~ 607 (1049)
T 3m1i_C 532 -KAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQK---TTADLQPQQVH 607 (1049)
T ss_dssp -HHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHH---HHTTSCHHHHH
T ss_pred -HhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHH---HHHhCCHHHHH
Confidence 001235777888888889999999999999999999997764331 2224766666543321 01224566778
Q ss_pred hhhhhhhhhcccCC
Q psy5930 941 GLMEGNTFCQSLTP 954 (2426)
Q Consensus 941 G~idaitfcl~L~p 954 (2426)
..++|+.+..+..|
T Consensus 608 ~~~eai~~ii~~~~ 621 (1049)
T 3m1i_C 608 TFYKACGIIISEER 621 (1049)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHcCC
Confidence 88999999887655
No 23
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=91.08 E-value=3 Score=52.36 Aligned_cols=271 Identities=12% Similarity=0.103 Sum_probs=146.5
Q ss_pred HHHHHHHhhcCC-ChhhhhHHHHHHHHHHHHHHHhhCCchhhcchhhH-HHHHHHHHHhccCchhhhhHhHHHHHHHHHH
Q psy5930 727 LIDAIAVILGHE-DKELCKPGYIALKCIMETATCITGSIENACNLPLM-EYLAERMCNLCYERAWYAKLGGCYAIKFFYN 804 (2426)
Q Consensus 727 l~DAi~~~l~~~-~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~p~~-~~L~~rf~~~Cy~~~w~~K~gG~~gi~~l~~ 804 (2426)
++..++..|.++ +.+++..+..++..+.. ++.+... .++ ..+.+.++.++.++.+..+..++.++.-+..
T Consensus 65 ~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~------~~~~~~~--~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~ 136 (450)
T 2jdq_A 65 VVARFVEFLKRKENCTLQFESAWVLTNIAS------GNSLQTR--IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAG 136 (450)
T ss_dssp HHHHHHHHHTCTTCHHHHHHHHHHHHHHHS------SCHHHHH--HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHCCCCCHHHHHHHHHHHHHHhc------CCHHHHH--HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcc
Confidence 788999999998 88888888888877653 2222111 111 2366777888888888888888888887776
Q ss_pred hchH--HHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhhhhhhhhHHHHHHHHhhh
Q psy5930 805 TMAI--KWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAETLTVQSKALSEVTNELTRN 882 (2426)
Q Consensus 805 ~~~~--~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e 882 (2426)
.-+. ..+. ...++..|+..+++- -+..++..|-.++..+ |... .+.... . ....++..|+.-
T Consensus 137 ~~~~~~~~~~--~~~~i~~L~~~l~~~---~~~~v~~~a~~~L~~l---~~~~-~~~~~~---~----~~~~~l~~L~~~ 200 (450)
T 2jdq_A 137 DSTMCRDYVL--DCNILPPLLQLFSKQ---NRLTMTRNAVWALSNL---CRGK-SPPPEF---A----KVSPCLNVLSWL 200 (450)
T ss_dssp TCHHHHHHHH--HTTCHHHHHHHTTSC---CCHHHHHHHHHHHHHH---HCCS-SSCCCG---G----GTGGGHHHHHHH
T ss_pred CCHHHHHHHH--HCCCHHHHHHHhcCC---CCHHHHHHHHHHHHHH---hCCC-CCCCCH---H----HHHHHHHHHHHH
Confidence 5432 1111 235788888888752 2233444444444333 3221 111000 1 112345555666
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhCCchhhccc-cchhhhhccCCCCccccccCchhhhHhhhhhhhhhcccCCCccc--c
Q psy5930 883 ITLPNDLLREQSMYLLQVFAETQGKSVVQVME-PHKDVLADIIPPKKLLIRNHSANAQIGLMEGNTFCQSLTPRLFT--T 959 (2426)
Q Consensus 883 L~s~n~~VR~~aq~~L~~lae~t~~~v~ell~-p~k~~Ll~~I~~Kpl~lRalpf~~QIG~idaitfcl~L~p~~l~--~ 959 (2426)
+.+.+..||..|-.+|..+++........+.. ..-..|..-+ +.-....|...+.++..+..-.+.... .
T Consensus 201 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-------~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 273 (450)
T 2jdq_A 201 LFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELL-------MHNDYKVVSPALRAVGNIVTGDDIQTQVIL 273 (450)
T ss_dssp TTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHT-------TCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHH-------CCCchhHHHHHHHHHHHHhhCChHHHHHHH
Confidence 67889999999888888887522100111100 0011111111 111123344444444433321110000 0
Q ss_pred CcchhhHHHHHHHHHHhhccCchhhhcCCCCCCccccchHHHHHHHHHHhhhc-CCchh-----hHHHHHHHHhhcCCCH
Q psy5930 960 DMSIHEHSSFFQEITNICESSDQALMKLPCYKPISSLVPLRKAAMRALASWHY-VPNCS-----QKIFNTLFAALERPNP 1033 (2426)
Q Consensus 960 ~~~~~el~rll~E~l~LadadD~~l~k~~~~k~~~~lv~LRv~ci~lL~~~~~-~~~~~-----~rIi~vfFKsL~s~s~ 1033 (2426)
+ ...+.-++.+...++ ...|..|+.+|...-. .++.. ..++..+.+.|.+.++
T Consensus 274 ~------~~~l~~L~~ll~~~~---------------~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~ 332 (450)
T 2jdq_A 274 N------CSALQSLLHLLSSPK---------------ESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEF 332 (450)
T ss_dssp T------TTHHHHHHHHTTCSS---------------HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCH
T ss_pred H------CccHHHHHHHHcCCC---------------HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCH
Confidence 0 011222222221111 2578888888875443 33332 2567788888989999
Q ss_pred HHHHHHHHHHHHHHcc
Q psy5930 1034 ELQEAAFQAMKTFVNG 1049 (2426)
Q Consensus 1034 ei~~aA~~gLk~vL~~ 1049 (2426)
++..+|-.+|......
T Consensus 333 ~v~~~a~~~L~~l~~~ 348 (450)
T 2jdq_A 333 RTRKEAAWAITNATSG 348 (450)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC
Confidence 9999999999998765
No 24
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=90.66 E-value=13 Score=46.63 Aligned_cols=276 Identities=8% Similarity=0.076 Sum_probs=142.8
Q ss_pred HHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHhhCCchhhcchhhHH--HHHHHHHHhccCc-hhhhhHhHHHHHHHH
Q psy5930 726 VLIDAIAVILGHEDKELCKPGYIALKCIMETATCITGSIENACNLPLME--YLAERMCNLCYER-AWYAKLGGCYAIKFF 802 (2426)
Q Consensus 726 vl~DAi~~~l~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~p~~~--~L~~rf~~~Cy~~-~w~~K~gG~~gi~~l 802 (2426)
+.+..++..|.+++.+++..|..++..+... .++... -.++. .+.+.++.++-.+ .+..+..++-.+.-+
T Consensus 20 ~~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~----~~~~~~---~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l 92 (450)
T 2jdq_A 20 VITSDMIEMIFSKSPEQQLSATQKFRKLLSK----EPNPPI---DEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNI 92 (450)
T ss_dssp --CHHHHHHHHSSCHHHHHHHHHHHHHHHHS----SSSCCH---HHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcC----CCCCcH---HHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 3577888899999999999888888776431 011110 01121 3556666666666 577777778777777
Q ss_pred HHhchHHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhhhhhhhhH-HHHHHHHhh
Q psy5930 803 YNTMAIKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAETLTVQSKAL-SEVTNELTR 881 (2426)
Q Consensus 803 ~~~~~~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~lv~ 881 (2426)
...-+...-.-.+...+..|+..+++- ...+++.|-.+|..+... . + + .....+ ..++..|+.
T Consensus 93 ~~~~~~~~~~~~~~~~i~~L~~lL~~~----~~~vr~~a~~~L~~l~~~---~---~---~---~~~~~~~~~~i~~L~~ 156 (450)
T 2jdq_A 93 ASGNSLQTRIVIQAGAVPIFIELLSSE----FEDVQEQAVWALGNIAGD---S---T---M---CRDYVLDCNILPPLLQ 156 (450)
T ss_dssp HSSCHHHHHHHHHTTHHHHHHHHTTCS----CHHHHHHHHHHHHHHHTT---C---H---H---HHHHHHHTTCHHHHHH
T ss_pred hcCCHHHHHHHHhCCCHHHHHHHHcCC----CHHHHHHHHHHHHHHccC---C---H---H---HHHHHHHCCCHHHHHH
Confidence 653322111111345788888888873 234555555555544321 0 0 0 000001 123455555
Q ss_pred hcCC-CChHHHHHHHHHHHHHHHHhCCch-hhccccchhhhhccCCCCccccccCchhhhHhhhhhhhhhcccCCCcccc
Q psy5930 882 NITL-PNDLLREQSMYLLQVFAETQGKSV-VQVMEPHKDVLADIIPPKKLLIRNHSANAQIGLMEGNTFCQSLTPRLFTT 959 (2426)
Q Consensus 882 eL~s-~n~~VR~~aq~~L~~lae~t~~~v-~ell~p~k~~Ll~~I~~Kpl~lRalpf~~QIG~idaitfcl~L~p~~l~~ 959 (2426)
-+.+ ++..||+.|-.+|..++...+... ..++...-..|..-+ +.-.-..+.....++.++..-.++....
T Consensus 157 ~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l-------~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 229 (450)
T 2jdq_A 157 LFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLL-------FVSDTDVLADACWALSYLSDGPNDKIQA 229 (450)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHT-------TCCCHHHHHHHHHHHHHHTSSSHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHH-------ccCCHHHHHHHHHHHHHHHCCCcHHHHH
Confidence 5664 789999999999998886331111 111111111111111 1111123333333443333221110000
Q ss_pred CcchhhHHHHHHHHHHhhccCchhhhcCCCCCCccccchHHHHHHHHHHhhhcCCc-hhh-----HHHHHHHHhhcCCCH
Q psy5930 960 DMSIHEHSSFFQEITNICESSDQALMKLPCYKPISSLVPLRKAAMRALASWHYVPN-CSQ-----KIFNTLFAALERPNP 1033 (2426)
Q Consensus 960 ~~~~~el~rll~E~l~LadadD~~l~k~~~~k~~~~lv~LRv~ci~lL~~~~~~~~-~~~-----rIi~vfFKsL~s~s~ 1033 (2426)
- - -...+.-++.+...+| ...|..|+++|.......+ ..+ .++..+.+.|.+.++
T Consensus 230 ~---~-~~~~i~~L~~ll~~~~---------------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~ 290 (450)
T 2jdq_A 230 V---I-DAGVCRRLVELLMHND---------------YKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKE 290 (450)
T ss_dssp H---H-HTTTHHHHHHHTTCSC---------------HHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSH
T ss_pred H---H-HcCcHHHHHHHHCCCc---------------hhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCH
Confidence 0 0 0001111122211111 2578888888875443332 222 578889999999999
Q ss_pred HHHHHHHHHHHHHHccC
Q psy5930 1034 ELQEAAFQAMKTFVNGS 1050 (2426)
Q Consensus 1034 ei~~aA~~gLk~vL~~~ 1050 (2426)
++..+|-.+|.....+.
T Consensus 291 ~vr~~a~~~L~~l~~~~ 307 (450)
T 2jdq_A 291 SIKKEACWTISNITAGN 307 (450)
T ss_dssp HHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 99999999999876543
No 25
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=90.49 E-value=72 Score=44.43 Aligned_cols=235 Identities=11% Similarity=0.062 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHccChhhHHHHHHhhHHHHHHHHhhcccHHHHhHHhhcCC--CChhhHHHHHHHHHHHH-hhhcCCCCc
Q psy5930 279 KEVLEHFAGVFSLMTPQTFREIFASTIDYMVDRMAHNYTLQVISNSFLVTR--DTSPVFATVLVEYLLEH-MEEMGNGNV 355 (2426)
Q Consensus 279 ke~le~fa~vF~~ld~~~F~Ei~~~~i~~l~e~~~~n~~L~~i~q~fL~~~--~~s~~F~~ill~fL~~~-l~~lg~~~~ 355 (2426)
.++.+.+..++..-|+..=++ ..-..+...++|.-..++..+|.+. ...+.||.++++-.+.+ -..+.. .
T Consensus 24 ~~l~~~l~~l~~~~~~~~r~~-----A~~~L~~~~~~p~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~--~ 96 (963)
T 2x19_B 24 ENVEKALHQLYYDPNIENKNL-----AQKWLMQAQVSPQAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSDIPT--D 96 (963)
T ss_dssp HHHHHHHHHHHHCCCHHHHHH-----HHHHHHHHHHSTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCG--G
T ss_pred HHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHhcCHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHHhCCH--H
Confidence 344455545455456543222 3444566777887776777777542 23357999999988854 444443 2
Q ss_pred cchhHHHHHHHHHhhhcccCCCCCcccccchHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhhcC--Cch-h-hHhhhHH
Q psy5930 356 ERSNLCLKLFKLVFGSVSFYPAENEHMLRPHLHQIVNRSMELAMTAKEPYNYFLLLRALFRSIGG--GSH-D-LLYQEFL 431 (2426)
Q Consensus 356 ~~~~~~lrLfkl~F~sv~~~~~~nE~vl~phl~~ii~~~~~~a~~a~ep~~Y~~LLR~lFRSigg--g~f-e-~LYkeil 431 (2426)
++..+-=.|+.++.. ++ .. .+++..-+..|+....+..-|.+|=.++..|+..+++ |.. + ....-.+
T Consensus 97 ~~~~ir~~ll~~l~~----~~-~~----~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l 167 (963)
T 2x19_B 97 QYESLKAQLFTQITR----FA-SG----SKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALL 167 (963)
T ss_dssp GHHHHHHHHHHHHHH----TT-TS----CHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----Hc-CC----CHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHH
Confidence 455555556666543 22 11 2556666666665555555566666777777777764 100 0 1111112
Q ss_pred HHHHHHHHHHHHh-hhcCccchhhhHHhhhhhccccccccccCCcchhhHHHHHHhcCC--c-hhHHhhhhhhhhhhccC
Q psy5930 432 PLLRNLLQGLNSL-QSGLHKQQMKDLFVELCLTVPVRLSSLLPYLPMLMDPLVSALNGS--S-TLISQGLRTLELCVDNL 507 (2426)
Q Consensus 432 PLLp~lLe~Ln~L-l~~~~~~~~RdL~VELCLTVPvRLS~LLPyL~~LM~PLV~AL~~~--~-eLvsqGLRTLElcVDNL 507 (2426)
=+|-.+-|.+... +...++...+ ..+..+++.+..=+...|+.. + ++..++|+++-.|++ +
T Consensus 168 ~iL~~l~ee~~~~~~~~~~r~~~~--------------~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~ 232 (963)
T 2x19_B 168 ELLTVLPEEFQTSRLPQYRKGLVR--------------TSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-L 232 (963)
T ss_dssp HHHHHHHHHHTTCCC-----------------------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-S
T ss_pred HHHHhCHHHHhcccCcHHHHHHHH--------------HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-C
Confidence 2222222211100 0001111111 233345555555555555442 2 489999999999997 4
Q ss_pred CcchhhhccchHHHHHHHHHHhhcCCCCchhhHHHHHHhhccCCC
Q psy5930 508 QPDFLYDHIQPVRADLMQALWRSLRSPNEQVAHVAYRVLGKFGGG 552 (2426)
Q Consensus 508 tpdfLdp~~~pV~~elm~ALw~~Lkp~~~~~~~~a~RILGKLGGr 552 (2426)
...+ . ....++..+.+.|. +......|+..|+-+-++
T Consensus 233 ~~~~----~--~~~~ll~~l~~~l~--~~~~~~~a~~~l~~i~~~ 269 (963)
T 2x19_B 233 EVPL----Q--DCEALIQAAFAALQ--DSELFDSSVEAIVNAISQ 269 (963)
T ss_dssp SCCG----G--GTHHHHHHHHHHTT--STTTHHHHHHHHHHHHTC
T ss_pred CCCc----c--cchHHHHHHHHHhC--CchHHHHHHHHHHHHHcc
Confidence 4321 1 23555666666664 233456677777666543
No 26
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=90.42 E-value=27 Score=45.20 Aligned_cols=94 Identities=18% Similarity=0.196 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHhhh-cCCchhh-----HHHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCC--hhhHHHh-hHHHHhhh
Q psy5930 998 PLRKAAMRALASWH-YVPNCSQ-----KIFNTLFAALERPNPELQEAAFQAMKTFVNGSPID--LKSVYEV-MKPLLLTL 1068 (2426)
Q Consensus 998 ~LRv~ci~lL~~~~-~~~~~~~-----rIi~vfFKsL~s~s~ei~~aA~~gLk~vL~~~~~~--~e~L~q~-LRPiL~nL 1068 (2426)
..|..|..+|+... ..++.++ .++..+.+.|.+.+.+++..|-.+|.....+.... ...+.++ +.|++--|
T Consensus 331 ~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL 410 (510)
T 3ul1_B 331 NIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLL 410 (510)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGG
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHh
Confidence 46777777776433 3333333 56778899999999999999999999987654321 2234455 77666555
Q ss_pred cC-CCCCCHhHHHHHHHhhhhCCC
Q psy5930 1069 GD-YRNLNLVTARKLSYIVQPFPS 1091 (2426)
Q Consensus 1069 sD-~k~Ltv~gLegLarLLeLL~n 1091 (2426)
.. ..++-...|++|..+++.-.+
T Consensus 411 ~~~d~~i~~~~L~aL~nil~~~~~ 434 (510)
T 3ul1_B 411 SAKDTKIIQVILDAISNIFQAAEK 434 (510)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHHHHhHh
Confidence 43 234566788888888875443
No 27
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=89.89 E-value=12 Score=52.48 Aligned_cols=391 Identities=10% Similarity=0.029 Sum_probs=179.8
Q ss_pred cchHHHHHHHHHHHHHhhcCchhHHHHHHHHHHhhcCCchhhHh----hhHHHHHHHHHHHHHHhhhcCccchhhhHHhh
Q psy5930 384 RPHLHQIVNRSMELAMTAKEPYNYFLLLRALFRSIGGGSHDLLY----QEFLPLLRNLLQGLNSLQSGLHKQQMKDLFVE 459 (2426)
Q Consensus 384 ~phl~~ii~~~~~~a~~a~ep~~Y~~LLR~lFRSiggg~fe~LY----keilPLLp~lLe~Ln~Ll~~~~~~~~RdL~VE 459 (2426)
.+++.+++. .+. ....+++- -.+-.+.+..||. |.... +-+-|+||.++++|+ -.-..+-=..+..
T Consensus 500 ~~~l~~l~~-~l~-~l~~~d~~--~~vr~~a~~~l~~--~~~~l~~~~~~l~~vl~~l~~~l~----~~v~~~A~~al~~ 569 (971)
T 2x1g_F 500 KRQIPRLMR-VLA-EIPYEKLN--VKLLGTALETMGS--YCNWLMENPAYIPPAINLLVRGLN----SSMSAQATLGLKE 569 (971)
T ss_dssp -CHHHHHHH-HHH-HSCTTTSC--HHHHHHHHHHHHH--THHHHC----CHHHHHHHHHHHHH----SSCHHHHHHHHHH
T ss_pred hHHHHHHHH-HHH-hcCccccC--HHHHHHHHHHHHH--HHHHHhcCHHHHHHHHHHHHHHhC----hHHHHHHHHHHHH
Confidence 588888877 331 11212221 1233355556652 22211 335566777776663 1111122245555
Q ss_pred hhhccccccccccCCcchhhHHHHHHhcCC---chhHHhhhhhhhhhhccCCcchhhhccchHHHHHHHHHHhhcCCC--
Q psy5930 460 LCLTVPVRLSSLLPYLPMLMDPLVSALNGS---STLISQGLRTLELCVDNLQPDFLYDHIQPVRADLMQALWRSLRSP-- 534 (2426)
Q Consensus 460 LCLTVPvRLS~LLPyL~~LM~PLV~AL~~~---~eLvsqGLRTLElcVDNLtpdfLdp~~~pV~~elm~ALw~~Lkp~-- 534 (2426)
+|-..+ ..|.||++.||.-|..+++.+ .+.....+.++=-.+++++++-..|.+..++..++..+...++..
T Consensus 570 l~~~~~---~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~ 646 (971)
T 2x1g_F 570 LCRDCQ---LQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSK 646 (971)
T ss_dssp HHHHCH---HHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHH---HhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 664444 457899999999999999762 345555556665666777666666667777777777766666643
Q ss_pred CchhhHHHHHHhhccCCCcccccccCCCCccccccCCCCeEEEEecCCCcccccchhHHHHHHHHHHcCCCCcHHHHHHH
Q psy5930 535 NEQVAHVAYRVLGKFGGGNRKMMIEPQKLDYNIRRSNGPAVVVHFPEHQKTINLSVEKAIDVAITVLKNPAVDMFYRKQG 614 (2426)
Q Consensus 535 ~~~~~~~a~RILGKLGGrNR~~L~~p~~L~~~~~~~~~~~~~~~f~~~~~~~~lpl~~~i~~A~~~l~~~~~d~~yr~~A 614 (2426)
+......++..||-|||-=+-. ... .. ... .+ . | ..+.+.--.+.++.....++.....|.-..+.|
T Consensus 647 ~~~~~~~~~~~l~~L~~~~~~l-~~~--~~--~~~-~~-~----~--~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~ 713 (971)
T 2x1g_F 647 TPAARIRTIFRLNMISTLFSSL-NTD--VD--EQA-TD-Q----P--IVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAA 713 (971)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH-TC-------------------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHhhc-CCC--cC--ccc-cc-c----c--CCCchHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 2212223333333333221111 000 00 000 00 0 1 011222223455566666665444455567788
Q ss_pred HHHHHHHHHhccc-CCCChh-HHHhhhcCCCCCCCCCCCCcccccCChhHHHHHHHHHHHHHHHhcc-hhHHHhHHHHHH
Q psy5930 615 WKVVKGYIISSMN-LSDNRS-TIQKLFSHPSFGNTESSQGTMYKYADPTIRNTHQNALTGIFMVYLI-KELRKDSLLYTV 691 (2426)
Q Consensus 615 ~~~l~~~l~~~l~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~f~a~~~-~~l~~~a~~f~~ 691 (2426)
+.+++..+..... ...-.. .+..+... +... . ...+..++..+..+... ++..+.-..++.
T Consensus 714 ~~~~~~~~~~~~~~~~p~l~~~~~~l~~~--~~~~-----------~---~~~~l~l~~~~i~~~~~~~~~~~~l~~~~~ 777 (971)
T 2x1g_F 714 CSAMKHAITNLRSSFQPMLQDLCLFIVAS--FQTR-----------C---CAPTLEISKTAIVMFFKDEGCKPLMQQLLR 777 (971)
T ss_dssp HHHHHHHHHHHHC--CTHHHHHHHHHHHH--CC-------------C---CHHHHHHHHHHHTTCCC-----HHHHHHHH
T ss_pred HHHHHHHHHhhhhhccccHHHHHHHHHHH--HhcC-----------C---chHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 8888875443211 100001 11111111 0000 0 12244555554444333 234444445555
Q ss_pred HHHHHHHHHHHHhhcCCCCCCcccccccCCCChHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHhhCCchhhcchh
Q psy5930 692 LVVRHYTLVAITQQTGPFPLYGKSALLEGTMDPLVLIDAIAVILGHEDKELCKPGYIALKCIMETATCITGSIENACNLP 771 (2426)
Q Consensus 692 ~v~rhf~l~~i~~~~~~~~~~~~~~~~~~~ld~~vl~DAi~~~l~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~p 771 (2426)
.++.|+. .+..+.- .. ..++.+++++.....+..+... .......-|
T Consensus 778 ~~~~~~~--~~l~~~~-----------~~--------------~~~~~pd~~~~~f~ll~~~l~~------~p~~~~~s~ 824 (971)
T 2x1g_F 778 EFIQHSF--KLFESTP-----------EQ--------------NFSNISDTMETFFGCLTQIIKK------IPQVLEDKT 824 (971)
T ss_dssp HHHHHHH--HHHTSCT-----------TT--------------HHHHTHHHHHHHHHHHHHHHHS------SGGGGGCTT
T ss_pred HHHHHHH--HHHhccc-----------cc--------------CCccCchHHHHHHHHHHHHHHh------CcHHHcCCc
Confidence 5555531 1111100 00 0012334444333333333321 111112225
Q ss_pred h-HHHHHHHHHHhccCchhhhhHhHHHHHHHHHHhc-----hHHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHH
Q psy5930 772 L-MEYLAERMCNLCYERAWYAKLGGCYAIKFFYNTM-----AIKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNL 845 (2426)
Q Consensus 772 ~-~~~L~~rf~~~Cy~~~w~~K~gG~~gi~~l~~~~-----~~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l 845 (2426)
. +..++.-...+|..++-....++|.-+..++..- -..++..+-..++++++..+.|. .|....+.+.+++
T Consensus 825 ~~l~~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~---~~~s~~~~~a~~l 901 (971)
T 2x1g_F 825 LAYDRLVFYAQRGMTLPESGAIRNSIQFLTHFVMQSRNHAHVTEVVLATGEQTLYTAMMCVGYL---TPRSQVDKFADIL 901 (971)
T ss_dssp SCHHHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTT---SCGGGGGGGHHHH
T ss_pred ccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHhHHHHHHHHHHHhccc---CChhHHHHHHHHH
Confidence 5 5666666666665544444444444333333221 13678888888999999987644 3344455556677
Q ss_pred HHHHHHH
Q psy5930 846 KQLIVLC 852 (2426)
Q Consensus 846 ~~ll~~~ 852 (2426)
..+...|
T Consensus 902 ~~l~~~~ 908 (971)
T 2x1g_F 902 LAMNRKY 908 (971)
T ss_dssp HHHHHHH
T ss_pred HHHHHHC
Confidence 7776655
No 28
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=88.70 E-value=20 Score=50.67 Aligned_cols=397 Identities=11% Similarity=0.124 Sum_probs=201.5
Q ss_pred hHHHHHHHHHHhccC--chhhhhHhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHH
Q psy5930 772 LMEYLAERMCNLCYE--RAWYAKLGGCYAIKFFYNTMAIKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLI 849 (2426)
Q Consensus 772 ~~~~L~~rf~~~Cy~--~~w~~K~gG~~gi~~l~~~~~~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll 849 (2426)
.+..+.+.+...+-+ .+|..+-++|.+++.+.+.+...-...+...+++.|+-.+.+....-+.. ...++.--++
T Consensus 448 ~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~---~v~~t~~~~l 524 (1023)
T 4hat_C 448 TEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKA---VVASDIMYVV 524 (1023)
T ss_dssp HHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchH---HHHHHHHHHH
Confidence 445556666555543 67999999999999999988665556666777776655433222111111 1222221222
Q ss_pred HHHcCCCCCCCchhhhhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhCCchh----hccccchhhhhccCC
Q psy5930 850 VLCATPIKEPVDAETLTVQSKALSEVTNELTRNITLPNDLLREQSMYLLQVFAETQGKSVV----QVMEPHKDVLADIIP 925 (2426)
Q Consensus 850 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~eL~s~n~~VR~~aq~~L~~lae~t~~~v~----ell~p~k~~Ll~~I~ 925 (2426)
-++..= .....+.+..++..++.-+..+++.|.++|-.++..|++-++.... .-++|+-+.++.-+.
T Consensus 525 Gry~~w---------l~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~ 595 (1023)
T 4hat_C 525 GQYPRF---------LKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQ 595 (1023)
T ss_dssp HTCHHH---------HHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHH
T ss_pred HHHHHH---------HhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHH
Confidence 111100 0111245888899999999999999999999999999998775432 133566665543221
Q ss_pred CCccccccCchhhhHhhhhhhhhhcccCCCccccCcchhhHHHHHHHHHH-hhc--cCchhhhcCCCCCCccccchHHHH
Q psy5930 926 PKKLLIRNHSANAQIGLMEGNTFCQSLTPRLFTTDMSIHEHSSFFQEITN-ICE--SSDQALMKLPCYKPISSLVPLRKA 1002 (2426)
Q Consensus 926 ~Kpl~lRalpf~~QIG~idaitfcl~L~p~~l~~~~~~~el~rll~E~l~-Lad--adD~~l~k~~~~k~~~~lv~LRv~ 1002 (2426)
.- . -.++........||+...++--|+-..-...++.+...+.+.+. +.+ ..|+.+.+- ..+...+.++-.
T Consensus 596 ~~-~--~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d--~~~~~~l~~il~- 669 (1023)
T 4hat_C 596 KT-T--ADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLD--SETVKIIANIIK- 669 (1023)
T ss_dssp HH-H--TTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGC--HHHHHHHHHHHH-
T ss_pred HH-H--HhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcC--HHHHHHHHHHHH-
Confidence 10 0 12466778999999999998877433322222333333444433 221 111111000 001223333222
Q ss_pred HHHHHHhhhcCCchhh---HHHHHHHHhhcCCCHHHHHHH--HHHHHHHHccCCCChhhHHHhhHHHHhhhcCCCCCCHh
Q psy5930 1003 AMRALASWHYVPNCSQ---KIFNTLFAALERPNPELQEAA--FQAMKTFVNGSPIDLKSVYEVMKPLLLTLGDYRNLNLV 1077 (2426)
Q Consensus 1003 ci~lL~~~~~~~~~~~---rIi~vfFKsL~s~s~ei~~aA--~~gLk~vL~~~~~~~e~L~q~LRPiL~nLsD~k~Ltv~ 1077 (2426)
|+...+.++.. .|.. +|+..+. .+|..-.+++..+ ..|... . +.+ .-.++|=|-
T Consensus 670 ~~~~v~~~lg~-~f~~~~~~i~~~~l-~~y~~~s~~i~~~~~~~g~~~-~----~~~--~~r~~r~ik------------ 728 (1023)
T 4hat_C 670 TNVAVCTSMGA-DFYPQLGHIYYNML-QLYRAVSSMISAQVAAEGLIA-T----KTP--KVRGLRTIK------------ 728 (1023)
T ss_dssp HHHHHHHHHGG-GGHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCGGG-G----GSH--HHHHHHHHH------------
T ss_pred HHHHHHHHhcH-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCchh-h----ccH--HHHHHHHHH------------
Confidence 55555555442 2322 4443332 2333333333221 111110 0 000 000111110
Q ss_pred HHHHHHHhhhhCCCcc-----cHHHHHHHHHHH-HHhhhh-hhhhhcCCCCCCcchhHHHHHHHhh-ccCchhHHhhHHH
Q psy5930 1078 TARKLSYIVQPFPSSF-----SEKLCEQLLVNL-KNLFEN-IVAQKENPPKNSETEKIIVVIIGIF-KESPAAKAQFIEP 1149 (2426)
Q Consensus 1078 gLegLarLLeLL~nyF-----kveiG~KLLdHL-k~~~e~-~~~~~~~~~~~~~~~kii~aIinIF-HLLP~aa~~Fle~ 1149 (2426)
.-.|+|+..|. ..+++..++.-| .+.++. .. .....++.+-...++.|++=+ +.+++.=...++.
T Consensus 729 -----~~il~l~~~~i~~~~~~~~~~~~~~~~l~~~vl~dY~~--~~~~~r~~~vL~l~s~iv~~~~~~~~~~~~~il~~ 801 (1023)
T 4hat_C 729 -----KEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMN--NVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQS 801 (1023)
T ss_dssp -----HHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHH--SCGGGCCHHHHHHHHHHHHHHGGGCHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHHh--CChhhccHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 00122222222 123444444333 222221 10 011224455667778888877 5555555567777
Q ss_pred HHHHHHHHHHhcCCCCCCCCcchHHHHHhhCcHHHHHHhhcccCCCchhHHHHH---HHHhhCCCCHHHHHHHHHh
Q psy5930 1150 LISLILENEHALSIGPYSPYREPLVKYLLRYPTETLQSMLSEIHMKDPLWRNFF---VYLIKHQEGKCFRDALQTQ 1222 (2426)
Q Consensus 1150 Lv~~Vl~lE~~L~~~~~SPfR~PL~kfLnRyp~e~~~~Fl~~~~l~~~~~~~~f---~~il~~~~a~~Lr~~l~~~ 1222 (2426)
+...++.+=.+ ..+..-=+|.++.|+|.++-..+...|+. +..++...++ ...++|++ |++-.+.
T Consensus 802 vf~~Tl~mi~~-~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~---~~~~~~~~~~~~~~~a~~h~~----r~~~~~~ 869 (1023)
T 4hat_C 802 VFECTLDMINK-DFTEYPEHRVEFYKLLKVINEKSFAAFLE---LPPAAFKLFVDAICWAFKHNN----RDVEVNG 869 (1023)
T ss_dssp HHHHHHHHHSS-CSSSSHHHHHHHHHHHHHHHHHCTHHHHT---SCHHHHHHHHHHHHHHHTCCC----HHHHHHH
T ss_pred HHHHHHHHHhc-ccccChHHHHHHHHHHHHHHHHChHHHHc---CCHHHHHHHHHHHHHHcCCCc----hHHHHHH
Confidence 77666665442 23333335999999999998888887872 4444555554 34567777 5544443
No 29
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=88.52 E-value=2.6 Score=54.82 Aligned_cols=271 Identities=13% Similarity=0.118 Sum_probs=142.4
Q ss_pred HHHHHHHhhcCC-ChhhhhHHHHHHHHHHHHHHHhhCCchhhcchhhH-HHHHHHHHHhccCchhhhhHhHHHHHHHHHH
Q psy5930 727 LIDAIAVILGHE-DKELCKPGYIALKCIMETATCITGSIENACNLPLM-EYLAERMCNLCYERAWYAKLGGCYAIKFFYN 804 (2426)
Q Consensus 727 l~DAi~~~l~~~-~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~p~~-~~L~~rf~~~Cy~~~w~~K~gG~~gi~~l~~ 804 (2426)
++..++..|.++ +.+++..|..++..+.. ++.+.. . .++ ...+..++.+..++.+..+..++.++.-+..
T Consensus 131 ~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~------~~~~~~-~-~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~ 202 (530)
T 1wa5_B 131 VVPRLVEFMRENQPEMLQLEAAWALTNIAS------GTSAQT-K-VVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAG 202 (530)
T ss_dssp CHHHHHHTTSTTSCHHHHHHHHHHHHHHTT------SCHHHH-H-HHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHhCCCCCHHHHHHHHHHHHHHhC------CCHHHH-H-HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 678899999997 78888888888876643 111111 0 000 1123334444444677778888888888876
Q ss_pred hch--HHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhhhhhhhhHHHHHHHHhhh
Q psy5930 805 TMA--IKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAETLTVQSKALSEVTNELTRN 882 (2426)
Q Consensus 805 ~~~--~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e 882 (2426)
.-+ ...+.. ..++..|+..+.+. +..+...|-.+| -..|....... . ......++..|+.-
T Consensus 203 ~~~~~~~~~~~--~~~l~~L~~ll~~~----~~~v~~~a~~~L---~~L~~~~~~~~-~-------~~~~~~~l~~L~~l 265 (530)
T 1wa5_B 203 DSTDYRDYVLQ--CNAMEPILGLFNSN----KPSLIRTATWTL---SNLCRGKKPQP-D-------WSVVSQALPTLAKL 265 (530)
T ss_dssp TCHHHHHHHHH--TTCHHHHHHGGGSC----CHHHHHHHHHHH---HHHHCCSSSCC-C-------HHHHGGGHHHHHHH
T ss_pred CCccchHHHHH--cCcHHHHHHHhccC----CHHHHHHHHHHH---HHHhCCCCCCC-c-------HHHHHhHHHHHHHH
Confidence 542 233333 36788899988872 223333443333 33333221111 0 01123345666667
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhCCchhhccc-cchhhhhccCCCCccccccCchhhhHhhhhhhhhhcccCCCccccCc
Q psy5930 883 ITLPNDLLREQSMYLLQVFAETQGKSVVQVME-PHKDVLADIIPPKKLLIRNHSANAQIGLMEGNTFCQSLTPRLFTTDM 961 (2426)
Q Consensus 883 L~s~n~~VR~~aq~~L~~lae~t~~~v~ell~-p~k~~Ll~~I~~Kpl~lRalpf~~QIG~idaitfcl~L~p~~l~~~~ 961 (2426)
+.+++..||..|-.+|..++......+..++. ..-..|..-+ +.-.-..+...+.++..+..-.+...
T Consensus 266 L~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL-------~~~~~~v~~~a~~~L~~l~~~~~~~~---- 334 (530)
T 1wa5_B 266 IYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELL-------SHESTLVQTPALRAVGNIVTGNDLQT---- 334 (530)
T ss_dssp TTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGG-------GCSCHHHHHHHHHHHHHHTTSCHHHH----
T ss_pred HcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHH-------CCCChhhHHHHHHHHHHHHcCCHHHH----
Confidence 78889999999999998888532111111111 0011111111 11112234444444443332111000
Q ss_pred chhhH--HHHHHHHHHhhccCchhhhcCCCCCCccccchHHHHHHHHHHhhhc-CCchh-----hHHHHHHHHhhcCCCH
Q psy5930 962 SIHEH--SSFFQEITNICESSDQALMKLPCYKPISSLVPLRKAAMRALASWHY-VPNCS-----QKIFNTLFAALERPNP 1033 (2426)
Q Consensus 962 ~~~el--~rll~E~l~LadadD~~l~k~~~~k~~~~lv~LRv~ci~lL~~~~~-~~~~~-----~rIi~vfFKsL~s~s~ 1033 (2426)
..+ ..++.-++.+....+ ...|..|+.+|+..-. .++.. ..++..+.+.|.+.++
T Consensus 335 --~~~~~~~~l~~L~~lL~~~~---------------~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~ 397 (530)
T 1wa5_B 335 --QVVINAGVLPALRLLLSSPK---------------ENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEY 397 (530)
T ss_dssp --HHHHHTTHHHHHHHHTTCSC---------------HHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCH
T ss_pred --HHHHHcchHHHHHHHHcCCC---------------HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCH
Confidence 000 011122222221111 3578888888775432 33322 2567788888888999
Q ss_pred HHHHHHHHHHHHHHccC
Q psy5930 1034 ELQEAAFQAMKTFVNGS 1050 (2426)
Q Consensus 1034 ei~~aA~~gLk~vL~~~ 1050 (2426)
+++.+|-.+|.......
T Consensus 398 ~v~~~a~~aL~~l~~~~ 414 (530)
T 1wa5_B 398 KTKKEACWAISNASSGG 414 (530)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99999999999998753
No 30
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=88.49 E-value=13 Score=49.59 Aligned_cols=366 Identities=11% Similarity=0.111 Sum_probs=189.4
Q ss_pred HHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHhhCCchhhcchhhHHHHHHHHHHhccCchhhhhHhHHHHHHHHHHhc
Q psy5930 727 LIDAIAVILGHEDKELCKPGYIALKCIMETATCITGSIENACNLPLMEYLAERMCNLCYERAWYAKLGGCYAIKFFYNTM 806 (2426)
Q Consensus 727 l~DAi~~~l~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~p~~~~L~~rf~~~Cy~~~w~~K~gG~~gi~~l~~~~ 806 (2426)
+.++ +..+++.+.+.++.|..++..+.+. ..+ ..--....|.+-|-++.-+.+. +++.+|..--
T Consensus 76 ~~~v-vkl~~s~~~~~Krl~YL~l~~~~~~------~~e------~~~L~iN~l~kDl~~~n~~ir~---lALr~L~~i~ 139 (621)
T 2vgl_A 76 HMEA-VNLLSSNRYTEKQIGYLFISVLVNS------NSE------LIRLINNAIKNDLASRNPTFMG---LALHCIANVG 139 (621)
T ss_dssp HHHH-HHGGGCSCHHHHHHHHHHHHHSCCC------CHH------HHHHHHHHHHHHHHSCCHHHHH---HHHHHHHHHC
T ss_pred HHHH-HHHhcCCCHHHHHHHHHHHHHHccC------CcH------HHHHHHHHHHHhcCCCCHHHHH---HHHHHhhccC
Confidence 4444 4599999999999998888766431 111 1122345555566666666544 4555554433
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhhhhhhhhHHHHHHHHhhhcCCC
Q psy5930 807 AIKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAETLTVQSKALSEVTNELTRNITLP 886 (2426)
Q Consensus 807 ~~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~eL~s~ 886 (2426)
....+ -.++..+.-.+. ..|...-++..|--++.++.+........+ ..+..+..-|.++
T Consensus 140 ~~e~~----~~l~~~v~~~l~--~~d~~~~VRK~A~~al~kl~~~~p~~~~~~--------------~~~~~l~~lL~d~ 199 (621)
T 2vgl_A 140 SREMA----EAFAGEIPKILV--AGDTMDSVKQSAALCLLRLYRTSPDLVPMG--------------DWTSRVVHLLNDQ 199 (621)
T ss_dssp CHHHH----HHHTTHHHHHHH--CSSSCHHHHHHHHHHHHHHHHHCGGGCCCC--------------SCHHHHHHHTTCS
T ss_pred CHHHH----HHHHHHHHHHHh--CCCCCHHHHHHHHHHHHHHHHhChhhcCch--------------hHHHHHHHHhCCC
Confidence 33322 234444444440 023345566777778888877532211110 1233334445678
Q ss_pred ChHHHHHHHHHHHHHHHHhCCchhhccccchhhhh----ccCCC-CccccccC-chhhhHhhhhhhhhhcccCCCccccC
Q psy5930 887 NDLLREQSMYLLQVFAETQGKSVVQVMEPHKDVLA----DIIPP-KKLLIRNH-SANAQIGLMEGNTFCQSLTPRLFTTD 960 (2426)
Q Consensus 887 n~~VR~~aq~~L~~lae~t~~~v~ell~p~k~~Ll----~~I~~-Kpl~lRal-pf~~QIG~idaitfcl~L~p~~l~~~ 960 (2426)
|..|+.+|-.++.-+++........++....+.|- ..-++ +-...... .-..|+-.++.++......++
T Consensus 200 d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~----- 274 (621)
T 2vgl_A 200 HLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDP----- 274 (621)
T ss_dssp CHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSH-----
T ss_pred CccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCH-----
Confidence 99999999999888876432211111111112221 11111 00000000 123888888888775432110
Q ss_pred cchhhHHHHHHHHHHhhccCch--hhhcCCCCCCccccchHHHHHHHHHHhhhcCCchhhHHHHHHHHhhcCCCHHHHHH
Q psy5930 961 MSIHEHSSFFQEITNICESSDQ--ALMKLPCYKPISSLVPLRKAAMRALASWHYVPNCSQKIFNTLFAALERPNPELQEA 1038 (2426)
Q Consensus 961 ~~~~el~rll~E~l~LadadD~--~l~k~~~~k~~~~lv~LRv~ci~lL~~~~~~~~~~~rIi~vfFKsL~s~s~ei~~a 1038 (2426)
...+.+..++...+..++.... .+. ++++ -....-.|++++......++....+++.+-+-|.++.+++.-+
T Consensus 275 ~~~~~l~~~L~~il~~~~~~~ks~~l~----~~n~--~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~~L~~~~~niry~ 348 (621)
T 2vgl_A 275 AVRGRLTECLETILNKAQEPPKSKKVQ----HSNA--KNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYL 348 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCSCSSHH----HHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSSCSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCccccccc----ccch--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcCCCcchHHH
Confidence 0012233344445544321000 010 0010 1134556777776655556677788888888888899999999
Q ss_pred HHHHHHHHHccCCCChhhHHHhhHHHHhhhc-CCCCCCHhHHHHHHHhhhhCCCcccHHHHHHHHHHHHHhhhhhhhhhc
Q psy5930 1039 AFQAMKTFVNGSPIDLKSVYEVMKPLLLTLG-DYRNLNLVTARKLSYIVQPFPSSFSEKLCEQLLVNLKNLFENIVAQKE 1117 (2426)
Q Consensus 1039 A~~gLk~vL~~~~~~~e~L~q~LRPiL~nLs-D~k~Ltv~gLegLarLLeLL~nyFkveiG~KLLdHLk~~~e~~~~~~~ 1117 (2426)
|-.+|..+.+...- ++.++....-++..|. |.- .++ -.+.|--|..+-+.-=-.+|-+.|+++++.- |...
T Consensus 349 aL~~l~~l~~~~~~-~~~~~~~~~~i~~~L~~d~d-~~I-r~~aL~lL~~l~~~~Nv~~Iv~eL~~yl~~~-d~~~---- 420 (621)
T 2vgl_A 349 ALESMCTLASSEFS-HEAVKTHIETVINALKTERD-VSV-RQRAVDLLYAMCDRSNAQQIVAEMLSYLETA-DYSI---- 420 (621)
T ss_dssp HHHHHHHHTTCTTT-HHHHHTTHHHHHHHHTTCCC-HHH-HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC-CHHH----
T ss_pred HHHHHHHHHhccCc-HHHHHHHHHHHHHHhccCCC-HhH-HHHHHHHHHHHcChhhHHHHHHHHHHHHHhc-CHHH----
Confidence 99999998765421 3555555666667777 432 332 2334444444444332345666666666542 1110
Q ss_pred CCCCCCcchhHHHHHHHhhccCchhHHhhHHHHHHHH
Q psy5930 1118 NPPKNSETEKIIVVIIGIFKESPAAKAQFIEPLISLI 1154 (2426)
Q Consensus 1118 ~~~~~~~~~kii~aIinIFHLLP~aa~~Fle~Lv~~V 1154 (2426)
..+++.+|..+---.|+.+..+++-|+..+
T Consensus 421 -------~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll 450 (621)
T 2vgl_A 421 -------REEIVLKVAILAEKYAVDYTWYVDTILNLI 450 (621)
T ss_dssp -------HHHHHHHHHHHHHHHCSSTHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 112333344333334666677777766544
No 31
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=88.28 E-value=22 Score=45.99 Aligned_cols=271 Identities=9% Similarity=0.063 Sum_probs=143.6
Q ss_pred HHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHhhCCchhhcchhhHHHHHHHHHHhccCch-hhhhHhHHHHHHHHHHhc
Q psy5930 728 IDAIAVILGHEDKELCKPGYIALKCIMETATCITGSIENACNLPLMEYLAERMCNLCYERA-WYAKLGGCYAIKFFYNTM 806 (2426)
Q Consensus 728 ~DAi~~~l~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~p~~~~L~~rf~~~Cy~~~-w~~K~gG~~gi~~l~~~~ 806 (2426)
+..++..|.+++.+++..|..++..+.. +.........+-..+++.++.+...+. +..+..++.+|.-+...-
T Consensus 76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s------~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~ 149 (528)
T 4b8j_A 76 LPAMIGGVYSDDNNLQLEATTQFRKLLS------IERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGT 149 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHT------CSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhc------CCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC
Confidence 7888899999999988888887766532 221010010011224455555555555 888888888888877643
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhhhhhhhhHH--HHHHHHhhhc-
Q psy5930 807 AIKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAETLTVQSKALS--EVTNELTRNI- 883 (2426)
Q Consensus 807 ~~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~lv~eL- 883 (2426)
+...-.-.+...+..|+..|++- ...+.+.|-.+|..+. ... + .. ...+. ..+..|+.-+
T Consensus 150 ~~~~~~~~~~g~i~~L~~lL~~~----~~~v~~~a~~aL~~l~---~~~---~------~~-~~~i~~~g~l~~Ll~lL~ 212 (528)
T 4b8j_A 150 SENTKVVIDHGAVPIFVKLLGSS----SDDVREQAVWALGNVA---GDS---P------KC-RDLVLANGALLPLLAQLN 212 (528)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCS----CHHHHHHHHHHHHHHH---HTC---H------HH-HHHHHHTTCHHHHHHTCC
T ss_pred HHHHHHHHhCCcHHHHHHHhcCC----CHHHHHHHHHHHHHHh---CCC---h------hh-HHHHHHCCcHHHHHHHHh
Confidence 32111112236788888888872 2345555555555543 111 0 00 00111 2455566666
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCchhhccccchhhhhccCCCCccccccCchhhhHhhhhhhhhhcccCCCccccCcch
Q psy5930 884 TLPNDLLREQSMYLLQVFAETQGKSVVQVMEPHKDVLADIIPPKKLLIRNHSANAQIGLMEGNTFCQSLTPRLFTTDMSI 963 (2426)
Q Consensus 884 ~s~n~~VR~~aq~~L~~lae~t~~~v~ell~p~k~~Ll~~I~~Kpl~lRalpf~~QIG~idaitfcl~L~p~~l~~~~~~ 963 (2426)
.+++..||..|-.+|..++.....+......+.-..|...+ +.-.-..+...+.++.++..-.+....
T Consensus 213 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL-------~~~~~~v~~~a~~aL~~l~~~~~~~~~----- 280 (528)
T 4b8j_A 213 EHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLI-------HSNDEEVLTDACWALSYLSDGTNDKIQ----- 280 (528)
T ss_dssp TTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHT-------TCCCHHHHHHHHHHHHHHTSSCHHHHH-----
T ss_pred cCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHHcCCHHHHH-----
Confidence 67888999999999988886332222222222222222111 111122333334444433321110000
Q ss_pred hhHH--HHHHHHHHhhccCchhhhcCCCCCCccccchHHHHHHHHHHhhhcC-Cchhh-----HHHHHHHHhhcCC-CHH
Q psy5930 964 HEHS--SFFQEITNICESSDQALMKLPCYKPISSLVPLRKAAMRALASWHYV-PNCSQ-----KIFNTLFAALERP-NPE 1034 (2426)
Q Consensus 964 ~el~--rll~E~l~LadadD~~l~k~~~~k~~~~lv~LRv~ci~lL~~~~~~-~~~~~-----rIi~vfFKsL~s~-s~e 1034 (2426)
.+. ..+.-++.+....+ ...|..|+++|...-.. ++..+ .++..+.+.|.+. +++
T Consensus 281 -~~~~~g~v~~Lv~lL~~~~---------------~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~ 344 (528)
T 4b8j_A 281 -AVIEAGVCPRLVELLLHPS---------------PSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKS 344 (528)
T ss_dssp -HHHHTTCHHHHHHHTTCSC---------------HHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHH
T ss_pred -HHHHcCHHHHHHHHHcCCC---------------hhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHH
Confidence 000 01111111111111 25788888888755442 32222 5678888889888 999
Q ss_pred HHHHHHHHHHHHHcc
Q psy5930 1035 LQEAAFQAMKTFVNG 1049 (2426)
Q Consensus 1035 i~~aA~~gLk~vL~~ 1049 (2426)
+...|-.+|..+..+
T Consensus 345 v~~~A~~~L~nl~~~ 359 (528)
T 4b8j_A 345 IKKEACWTISNITAG 359 (528)
T ss_dssp HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHCC
Confidence 999999999998764
No 32
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=87.75 E-value=1.1e+02 Score=43.11 Aligned_cols=176 Identities=9% Similarity=0.052 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHHHhCCchhhccccchhhhhccCCCCccccccCchhhhHhhhhhhhhhcccCCCccccCcchhh-HH
Q psy5930 889 LLREQSMYLLQVFAETQGKSVVQVMEPHKDVLADIIPPKKLLIRNHSANAQIGLMEGNTFCQSLTPRLFTTDMSIHE-HS 967 (2426)
Q Consensus 889 ~VR~~aq~~L~~lae~t~~~v~ell~p~k~~Ll~~I~~Kpl~lRalpf~~QIG~idaitfcl~L~p~~l~~~~~~~e-l~ 967 (2426)
..|+++..+|..++...+.++...+.+.-...++ +.+..+ -..||.-||++-=..-..-.. .+. +.
T Consensus 428 ~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~---~~~~~W---------~~~eaal~algsia~~~~~~~-e~~~l~ 494 (1049)
T 3m1i_C 428 QLYKSEREVLVYLTHLNVIDTEEIMISKLARQID---GSEWSW---------HNINTLSWAIGSISGTMSEDT-EKRFVV 494 (1049)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHT---SSSCCH---------HHHHHHHHHHHHTTTSSCHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhC---CCCCCH---------HHHHHHHHHHHHHhcccCchh-hHHHHH
Confidence 3677888899999977765555554443222221 111111 236677777653211111000 011 22
Q ss_pred HHHHHHHHhhccCchhhhcCCCCCCccccchHHH-HHHHHHHhh----hcCCchhhHHHHHHHHhhcCCCHHHHHHHHHH
Q psy5930 968 SFFQEITNICESSDQALMKLPCYKPISSLVPLRK-AAMRALASW----HYVPNCSQKIFNTLFAALERPNPELQEAAFQA 1042 (2426)
Q Consensus 968 rll~E~l~LadadD~~l~k~~~~k~~~~lv~LRv-~ci~lL~~~----~~~~~~~~rIi~vfFKsL~s~s~ei~~aA~~g 1042 (2426)
.++.-++.+++. +....-.+++. .++.++... ...+++-..++..+|++|..+++.|..+|-.+
T Consensus 495 ~v~~~l~~l~~~-----------~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~a 563 (1049)
T 3m1i_C 495 TVIKDLLDLTVK-----------KRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDT 563 (1049)
T ss_dssp HHHHHHHHHTTS-----------SCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhh-----------hccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 233333344432 11100012222 344555422 12456777899999999999999999999999
Q ss_pred HHHHHccCCC-----------C-hhhHHHhhHHHHhhhcCCCCCCHhHHHHHHHhhhhCC
Q psy5930 1043 MKTFVNGSPI-----------D-LKSVYEVMKPLLLTLGDYRNLNLVTARKLSYIVQPFP 1090 (2426)
Q Consensus 1043 Lk~vL~~~~~-----------~-~e~L~q~LRPiL~nLsD~k~Ltv~gLegLarLLeLL~ 1090 (2426)
+..+....+. | -+.|.+.|..++..+.+... ....+++++++.-.+
T Consensus 564 l~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~--~~~~eai~~ii~~~~ 621 (1049)
T 3m1i_C 564 FIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQV--HTFYKACGIIISEER 621 (1049)
T ss_dssp HHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHH--HHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHH--HHHHHHHHHHHHcCC
Confidence 9998865321 1 24455555555555433222 355789999987776
No 33
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=87.36 E-value=4.5 Score=47.69 Aligned_cols=155 Identities=6% Similarity=0.039 Sum_probs=107.9
Q ss_pred HHhhcCCChhhhhHHHHHHHH-HHHHHHHhhCCchhhcchhhHHHHHHHHHHhc-cCchhhhhHhHHHHHHHHHHhch-H
Q psy5930 732 AVILGHEDKELCKPGYIALKC-IMETATCITGSIENACNLPLMEYLAERMCNLC-YERAWYAKLGGCYAIKFFYNTMA-I 808 (2426)
Q Consensus 732 ~~~l~~~~~~~~~~~~~~l~~-~~~~~~~i~~~~~~~~~~p~~~~L~~rf~~~C-y~~~w~~K~gG~~gi~~l~~~~~-~ 808 (2426)
.+.+++.+-.-|+.|..+|.. +.+-+..+.++ ... +..+++-+...- -+..-....++|.+|..|.+.+. .
T Consensus 22 ~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~---~~~---~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~ 95 (249)
T 2qk1_A 22 QERITSSKWKDRVEALEEFWDSVLSQTKKLKST---SQN---YSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTP 95 (249)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCT---TCC---CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHhcCCccccC---ccc---HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccc
Confidence 456688888888888888766 54421111110 111 122333333333 36667778999999999999887 6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhhhhhhhhHHHHHHHHhhhcCCCCh
Q psy5930 809 KWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAETLTVQSKALSEVTNELTRNITLPND 888 (2426)
Q Consensus 809 ~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~eL~s~n~ 888 (2426)
.|-..|...++.+++..++|-- ..+++.|..++..+...+... ... ..+..++..++.-+.|+|.
T Consensus 96 ~f~~~y~~~llp~ll~~l~dkk----~~V~~aa~~al~~i~~~~~~~-~~~----------~~l~~ll~~l~~~l~~k~~ 160 (249)
T 2qk1_A 96 GFSKDYVSLVFTPLLDRTKEKK----PSVIEAIRKALLTICKYYDPL-ASS----------GRNEDMLKDILEHMKHKTP 160 (249)
T ss_dssp TSCHHHHHHHHHHHHHGGGCCC----HHHHHHHHHHHHHHHHHSCTT-CTT----------CTTHHHHHHHHHHTTCSSH
T ss_pred cccHHHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHHHHcccc-ccC----------CcHHHHHHHHHHHHcCCCh
Confidence 6533778889999999999865 345677888888888776421 110 0266688889999999999
Q ss_pred HHHHHHHHHHHHHHHHhCC
Q psy5930 889 LLREQSMYLLQVFAETQGK 907 (2426)
Q Consensus 889 ~VR~~aq~~L~~lae~t~~ 907 (2426)
.||+++-.+|..+++.++.
T Consensus 161 ~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 161 QIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHHHcCC
Confidence 9999999999999987774
No 34
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=86.73 E-value=2.1 Score=50.58 Aligned_cols=151 Identities=7% Similarity=-0.040 Sum_probs=100.5
Q ss_pred HHHHhccCchhhhhHhHHHHHHH-HHHhchHHHH-HHHHHHHHHHHHHHh-cCCCcccchhHHHHHHHHHHHHHHHHc-C
Q psy5930 779 RMCNLCYERAWYAKLGGCYAIKF-FYNTMAIKWV-YSHMFVFVKALLFVM-MDLTGEVSSGAIDEARRNLKQLIVLCA-T 854 (2426)
Q Consensus 779 rf~~~Cy~~~w~~K~gG~~gi~~-l~~~~~~~wl-~~~~~~ivraLlfvl-kD~p~e~~~~~~~~a~~~l~~ll~~~~-~ 854 (2426)
.|....-...|..|.++...|.. +++.-+.-+. .....+++++|.-+| +|.-.. ++..|-.++..+.+... .
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~----v~~~A~~al~~la~~l~~~ 95 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQ----AVALAAQSVELICDKLKTP 95 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHH----HHHHHHHHHHHHHHHHCTT
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHH----HHHHHHHHHHHHHHhcccc
Confidence 34555567789999999999999 8865332221 222357899999888 675533 34566666666664432 1
Q ss_pred CCCCCCchhhhhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhCCc-----hhhccccchhhhhccCCCCcc
Q psy5930 855 PIKEPVDAETLTVQSKALSEVTNELTRNITLPNDLLREQSMYLLQVFAETQGKS-----VVQVMEPHKDVLADIIPPKKL 929 (2426)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~lv~eL~s~n~~VR~~aq~~L~~lae~t~~~-----v~ell~p~k~~Ll~~I~~Kpl 929 (2426)
... .+....++..++.-+.+.+..||++++.++..+.+.++.. +..+|+. |+.-+-.|
T Consensus 96 ~f~-----------~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~----l~~~l~~k-- 158 (249)
T 2qk1_A 96 GFS-----------KDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKD----ILEHMKHK-- 158 (249)
T ss_dssp TSC-----------HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHH----HHHHTTCS--
T ss_pred ccc-----------HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHH----HHHHHcCC--
Confidence 211 1235557778888889999999999999999999987631 3344443 33222222
Q ss_pred ccccCchhhhHhhhhhhhhhcccCCC
Q psy5930 930 LIRNHSANAQIGLMEGNTFCQSLTPR 955 (2426)
Q Consensus 930 ~lRalpf~~QIG~idaitfcl~L~p~ 955 (2426)
....+.+.+..+..|+...+.
T Consensus 159 -----~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 159 -----TPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp -----SHHHHHHHHHHHHHHHHHCCS
T ss_pred -----ChHHHHHHHHHHHHHHHHcCC
Confidence 236899999999999876654
No 35
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=86.48 E-value=7.9 Score=54.08 Aligned_cols=184 Identities=16% Similarity=0.184 Sum_probs=117.0
Q ss_pred HHHHHHHHhcchhHHHhHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccccCCCChHH--HHHHHHHhhcCCChhhhhHH
Q psy5930 669 ALTGIFMVYLIKELRKDSLLYTVLVVRHYTLVAITQQTGPFPLYGKSALLEGTMDPLV--LIDAIAVILGHEDKELCKPG 746 (2426)
Q Consensus 669 ll~~~f~a~~~~~l~~~a~~f~~~v~rhf~l~~i~~~~~~~~~~~~~~~~~~~ld~~v--l~DAi~~~l~~~~~~~~~~~ 746 (2426)
++.++--+...+---+.|...+..+|+|+.. ...+.|.+ ++.++++++++..+.++++|
T Consensus 55 ~~~~~~~~~~~k~~~~~a~~~~~~~~~~~~~-------------------~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa 115 (986)
T 2iw3_A 55 FFGELAKGIKDKKTAANAMQAVAHIANQSNL-------------------SPSVEPYIVQLVPAICTNAGNKDKEIQSVA 115 (986)
T ss_dssp HHHHHHHHHTSHHHHHHHHHHHHHHTCTTTC-------------------CTTTHHHHHTTHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCC-------------------CCCcccchHHHHHHHHHHhcCCchHHHHHH
Confidence 3344444444442226666666666555321 00123444 68999999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCchhhcchhhHHHHHHHHHHhccCchhhhhHhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHh
Q psy5930 747 YIALKCIMETATCITGSIENACNLPLMEYLAERMCNLCYERAWYAKLGGCYAIKFFYNTMAIKWVYSHMFVFVKALLFVM 826 (2426)
Q Consensus 747 ~~~l~~~~~~~~~i~~~~~~~~~~p~~~~L~~rf~~~Cy~~~w~~K~gG~~gi~~l~~~~~~~wl~~~~~~ivraLlfvl 826 (2426)
..|+..++....- .+. -.++..|+..+-+ ..-|+.|.|++--|.-|++.. +.-+.....+++..+-.+|
T Consensus 116 ~~~~~~~~~~~~~------~a~-~~~~~~~~~~~~~---~~kw~~k~~~l~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~ 184 (986)
T 2iw3_A 116 SETLISIVNAVNP------VAI-KALLPHLTNAIVE---TNKWQEKIAILAAFSAMVDAA-KDQVALRMPELIPVLSETM 184 (986)
T ss_dssp HHHHHHHHHHSCG------GGH-HHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCH------HHH-HHHHHHHHHHhcc---ccchHHHHHHHHHHHHHHHHh-HHHHHHhccchhcchHhhc
Confidence 9999988774321 111 1122333333321 224999999999999999988 5778899999999999999
Q ss_pred cCCCcccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhhhhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhC
Q psy5930 827 MDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAETLTVQSKALSEVTNELTRNITLPNDLLREQSMYLLQVFAETQG 906 (2426)
Q Consensus 827 kD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~eL~s~n~~VR~~aq~~L~~lae~t~ 906 (2426)
-|+-.|+... |.+++.. .|. -+.+. | +...+-.|+.-+.+|.. ..+|+..|+.+|=
T Consensus 185 ~d~k~~v~~~----~~~~~~~---~~~-~~~n~------d-----~~~~~~~~~~~~~~p~~-----~~~~~~~l~~~tf 240 (986)
T 2iw3_A 185 WDTKKEVKAA----ATAAMTK---ATE-TVDNK------D-----IERFIPSLIQCIADPTE-----VPETVHLLGATTF 240 (986)
T ss_dssp TCSSHHHHHH----HHHHHHH---HGG-GCCCT------T-----TGGGHHHHHHHHHCTTH-----HHHHHHHHTTCCC
T ss_pred ccCcHHHHHH----HHHHHHH---HHh-cCCCc------c-----hhhhHHHHHHHhcChhh-----hHHHHHHhhcCee
Confidence 9998886654 4444433 332 22222 2 22235566777778854 5667888887653
No 36
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=85.06 E-value=24 Score=45.61 Aligned_cols=307 Identities=16% Similarity=0.125 Sum_probs=158.4
Q ss_pred HHHHHHHhhcCCC-hhhhhHHHHHHHHHHHHHHHhhCCchhhcchhhH-HHHHHHHHHhccCchhhhhHhHHHHHHHHHH
Q psy5930 727 LIDAIAVILGHED-KELCKPGYIALKCIMETATCITGSIENACNLPLM-EYLAERMCNLCYERAWYAKLGGCYAIKFFYN 804 (2426)
Q Consensus 727 l~DAi~~~l~~~~-~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~p~~-~~L~~rf~~~Cy~~~w~~K~gG~~gi~~l~~ 804 (2426)
.+..++..|.+.+ .+++..|..+|..+.. ++.+.. ..++ ...++.++.+..++....+..++.++.-+..
T Consensus 118 ~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~------~~~~~~--~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~ 189 (528)
T 4b8j_A 118 VVPRFVQFLTREDFPQLQFEAAWALTNIAS------GTSENT--KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAG 189 (528)
T ss_dssp CHHHHHHHHTCTTCHHHHHHHHHHHHHHHT------SCHHHH--HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhCCCCCHHHHHHHHHHHHHHhC------CCHHHH--HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhC
Confidence 6788999999887 8888888888876643 222211 1111 1355667777777788888888888888876
Q ss_pred hchH--HHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhhhhhhhhHHHHHHHHhhh
Q psy5930 805 TMAI--KWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAETLTVQSKALSEVTNELTRN 882 (2426)
Q Consensus 805 ~~~~--~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e 882 (2426)
.-+. .-+.+ ...+.+|+..|.+.+ +..+...|-.+| -..|....... ......++..|+.-
T Consensus 190 ~~~~~~~~i~~--~g~l~~Ll~lL~~~~---~~~v~~~a~~~L---~~L~~~~~~~~---------~~~~~~~l~~L~~l 252 (528)
T 4b8j_A 190 DSPKCRDLVLA--NGALLPLLAQLNEHT---KLSMLRNATWTL---SNFCRGKPQPS---------FEQTRPALPALARL 252 (528)
T ss_dssp TCHHHHHHHHH--TTCHHHHHHTCCTTC---CHHHHHHHHHHH---HHHHCSSSCCC---------HHHHTTHHHHHHHH
T ss_pred CChhhHHHHHH--CCcHHHHHHHHhcCC---CHHHHHHHHHHH---HHHHcCCCCCc---------HHHHHHHHHHHHHH
Confidence 5432 22222 247888888885332 233333443333 33343321111 01134456667777
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhCCchhhcccc-chhhhhccCCCCccccccCchhhhHhhhhhhhhhcccCCCccc--c
Q psy5930 883 ITLPNDLLREQSMYLLQVFAETQGKSVVQVMEP-HKDVLADIIPPKKLLIRNHSANAQIGLMEGNTFCQSLTPRLFT--T 959 (2426)
Q Consensus 883 L~s~n~~VR~~aq~~L~~lae~t~~~v~ell~p-~k~~Ll~~I~~Kpl~lRalpf~~QIG~idaitfcl~L~p~~l~--~ 959 (2426)
|.+++..||..|-.+|..++...+..+..++.. .-..|..-+ +.-.-..|...+.++..+..-.+.... +
T Consensus 253 L~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL-------~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 325 (528)
T 4b8j_A 253 IHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-------LHPSPSVLIPALRTVGNIVTGDDAQTQCII 325 (528)
T ss_dssp TTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHT-------TCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHH-------cCCChhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 788999999999888888874221111111110 011111111 111112333333333333221111000 0
Q ss_pred CcchhhHHHHHHHHHHhhccC-chhhhcCCCCCCccccchHHHHHHHHHHhhhc-CCchhh-----HHHHHHHHhhcCCC
Q psy5930 960 DMSIHEHSSFFQEITNICESS-DQALMKLPCYKPISSLVPLRKAAMRALASWHY-VPNCSQ-----KIFNTLFAALERPN 1032 (2426)
Q Consensus 960 ~~~~~el~rll~E~l~Ladad-D~~l~k~~~~k~~~~lv~LRv~ci~lL~~~~~-~~~~~~-----rIi~vfFKsL~s~s 1032 (2426)
+ . ..+..++.+...+ + ..+|..|..+|+.... .++... .++..+.+.|.+.+
T Consensus 326 ~---~---~~l~~L~~lL~~~~~---------------~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~ 384 (528)
T 4b8j_A 326 D---H---QALPCLLSLLTQNLK---------------KSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAE 384 (528)
T ss_dssp T---T---THHHHHHHHHHSCCC---------------HHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred H---h---hhHHHHHHHHcCCCc---------------HHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCC
Confidence 0 0 0122222222211 1 2356666666664332 332222 55677888888889
Q ss_pred HHHHHHHHHHHHHHHccC-CCChh-hHHHh-hHHHHhhhcCCC-CCCHhHHHHHHHhh
Q psy5930 1033 PELQEAAFQAMKTFVNGS-PIDLK-SVYEV-MKPLLLTLGDYR-NLNLVTARKLSYIV 1086 (2426)
Q Consensus 1033 ~ei~~aA~~gLk~vL~~~-~~~~e-~L~q~-LRPiL~nLsD~k-~Ltv~gLegLarLL 1086 (2426)
++++..|-.+|..+.... .-..+ .+.++ +.|++.-|.+.. ++-...+++|..++
T Consensus 385 ~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~ 442 (528)
T 4b8j_A 385 FDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENIL 442 (528)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 999999999999988652 11122 22334 666655555422 22233444444443
No 37
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=84.96 E-value=1.4e+02 Score=41.60 Aligned_cols=356 Identities=12% Similarity=0.051 Sum_probs=170.7
Q ss_pred ChhhhhHHHHHHHHHHHHHHHhhCCchhhcchhhHHHHHHHHHHhc--cCchhhhhHhHHHHHHHHHHhc-----hHH--
Q psy5930 739 DKELCKPGYIALKCIMETATCITGSIENACNLPLMEYLAERMCNLC--YERAWYAKLGGCYAIKFFYNTM-----AIK-- 809 (2426)
Q Consensus 739 ~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~p~~~~L~~rf~~~C--y~~~w~~K~gG~~gi~~l~~~~-----~~~-- 809 (2426)
....|.+|..++..+... +|+ .. --+++.++.+.+...- -.+.|..|-|+..++..+.+.. +..
T Consensus 374 ~~s~R~aa~~~L~~l~~~----~~~--~v-~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~ 446 (960)
T 1wa5_C 374 TDTRRRACTDFLKELKEK----NEV--LV-TNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSST 446 (960)
T ss_dssp --CHHHHHHHHHHHHHHH----CHH--HH-HHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCB
T ss_pred ccCcHHHHHHHHHHHHHH----cch--hH-HHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccc
Confidence 346677777777666553 221 11 1123333333333110 1467999999999999997542 111
Q ss_pred --HHHHHHHHHH-HHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhhhhhhhhHHHHHHHHhhhcCCC
Q psy5930 810 --WVYSHMFVFV-KALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAETLTVQSKALSEVTNELTRNITLP 886 (2426)
Q Consensus 810 --wl~~~~~~iv-raLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~eL~s~ 886 (2426)
.+ ....++ +-++-.+.|- .....-++..|-.++ -+.+ ... ....+..++..++.-|.++
T Consensus 447 ~~~~--~l~~~l~~~v~p~l~~~-~~~~p~vr~~a~~~l---g~~~-~~~-----------~~~~l~~~l~~l~~~L~d~ 508 (960)
T 1wa5_C 447 NNLL--NVVDFFTKEIAPDLTSN-NIPHIILRVDAIKYI---YTFR-NQL-----------TKAQLIELMPILATFLQTD 508 (960)
T ss_dssp CTTC--CHHHHHHHHTHHHHHCS-SCSCHHHHHHHHHHH---HHTG-GGS-----------CHHHHHHHHHHHHHHTTCS
T ss_pred cccc--cHHHHHHHHhHHHhcCC-CCCCceehHHHHHHH---HHHH-hhC-----------CHHHHHHHHHHHHHHhCCC
Confidence 00 111111 1122223442 111222333333222 2222 111 1124666777788888899
Q ss_pred ChHHHHHHHHHHHHHHHHhC-----Cc--hhhccccchhhhhccCCCCccccccC---c--hhhhHhhhhhhhhhcc-cC
Q psy5930 887 NDLLREQSMYLLQVFAETQG-----KS--VVQVMEPHKDVLADIIPPKKLLIRNH---S--ANAQIGLMEGNTFCQS-LT 953 (2426)
Q Consensus 887 n~~VR~~aq~~L~~lae~t~-----~~--v~ell~p~k~~Ll~~I~~Kpl~lRal---p--f~~QIG~idaitfcl~-L~ 953 (2426)
+..||.+|-.+|..+.+..+ .+ -.+.+.||-+.++.-++.- +..- | ...+-..+.|+.-+.. ..
T Consensus 509 ~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~l---l~~~~~~~~~~~~~e~l~~al~~vv~~~~ 585 (960)
T 1wa5_C 509 EYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIAL---ILKHGSSPEKLAENEFLMRSIFRVLQTSE 585 (960)
T ss_dssp CHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHH---HHTTCCCHHHHTSCHHHHHHHHHHHHHHT
T ss_pred ChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHH---HHhccCCCCcccccHHHHHHHHHHHHHHH
Confidence 99999999999999988532 11 1466778877766544310 0000 0 0022233444433322 23
Q ss_pred CCccccCcchhhHHHHHHHHHHhh-ccCchhhhcCCCCCCccccchHHHHHHHHHHhhhc--CCc----hhhHHHHHHHH
Q psy5930 954 PRLFTTDMSIHEHSSFFQEITNIC-ESSDQALMKLPCYKPISSLVPLRKAAMRALASWHY--VPN----CSQKIFNTLFA 1026 (2426)
Q Consensus 954 p~~l~~~~~~~el~rll~E~l~La-dadD~~l~k~~~~k~~~~lv~LRv~ci~lL~~~~~--~~~----~~~rIi~vfFK 1026 (2426)
..+.+|- +.+...+.+.+... +.. .-..++.-++..+++... .|+ +.++++.+|++
T Consensus 586 ~~~~p~~---~~l~~~L~~~l~~~~~~~--------------~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~ 648 (960)
T 1wa5_C 586 DSIQPLF---PQLLAQFIEIVTIMAKNP--------------SNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLT 648 (960)
T ss_dssp TTTGGGH---HHHHHHHHHHHHHHTTSC--------------CCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHH
T ss_pred HhhhhHH---HHHHHHHHHHHHHHHhCC--------------CCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 3444433 34433333333332 111 111244444544443322 222 45588999999
Q ss_pred hhcCCCHHHHHHHHHHHHHHHccCCCChhhHHHhhHHHH--hhhcCCCCCCHhHHHHHHHhh----hhCCCcccHHHHHH
Q psy5930 1027 ALERPNPELQEAAFQAMKTFVNGSPIDLKSVYEVMKPLL--LTLGDYRNLNLVTARKLSYIV----QPFPSSFSEKLCEQ 1100 (2426)
Q Consensus 1027 sL~s~s~ei~~aA~~gLk~vL~~~~~~~e~L~q~LRPiL--~nLsD~k~Ltv~gLegLarLL----eLL~nyFkveiG~K 1100 (2426)
.|.....+..+.+.+.+...+...+-.++.+.+.+-+++ ..+...- .+..+.|+| +..+..|.. .+.
T Consensus 649 iL~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~L~~~~~~~~~~~~~--~~~ 721 (960)
T 1wa5_C 649 VFSEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQPLLAPNVWELKG-----NIPAVTRLLKSFIKTDSSIFPD--LVP 721 (960)
T ss_dssp HHHTTCTTTHHHHHHHHHHHHHHCSSCCTTTGGGHHHHTSGGGGCCTT-----THHHHHHHHHHHHHHHGGGCSC--SHH
T ss_pred HHHhhhHhhHHHHHHHHHHHHHhccCCCHHHHHHHHHHcCHHHhcCCC-----CchhHHHHHHHHHHhChHHHHH--HHH
Confidence 998887888888888777766443212233333343343 2333221 222333332 111222211 123
Q ss_pred HHHHHHHhhhhhhhhhcCCCCCCcchhHHHHHHHhhccCchh-HHhhHHHHHHHHHH
Q psy5930 1101 LLVNLKNLFENIVAQKENPPKNSETEKIIVVIIGIFKESPAA-KAQFIEPLISLILE 1156 (2426)
Q Consensus 1101 LLdHLk~~~e~~~~~~~~~~~~~~~~kii~aIinIFHLLP~a-a~~Fle~Lv~~Vl~ 1156 (2426)
++..+.+.... + ..+.-.+..+-+|.+-+|.. -..|++.++..++.
T Consensus 722 ~l~~~~~~~~~---------~-~~~~~a~~ll~~i~~~~~~~~~~~yl~~i~~~l~~ 768 (960)
T 1wa5_C 722 VLGIFQRLIAS---------K-AYEVHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQ 768 (960)
T ss_dssp HHHHHHHHHTC---------T-TTHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHH
T ss_pred HHHHHHHHhCC---------C-cccchHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 34433332211 0 12344555666777778876 67788888887664
No 38
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=84.61 E-value=97 Score=41.15 Aligned_cols=253 Identities=11% Similarity=0.153 Sum_probs=137.6
Q ss_pred CccHHHHHHHHHHHHHHHhcCChhHHHHhhHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhcCCCCCCCCCccCchhhHH
Q psy5930 1770 TANLGNISIALELLTLLITILDEGQILHIIKPLQRGLVACISSSITKVIRLVHALLCRLMSTFPTEPISSNVASKREELD 1849 (2426)
Q Consensus 1770 ~~n~~~~~naLevL~il~~~~~~~~il~nl~~lq~lL~kcl~~~n~~i~~~l~~ll~rll~~~p~~~~~~~~~~~~~e~~ 1849 (2426)
+.|....+.||..|+-+- .++ ..+.+...+.+|+.+.++.|.+...-.+.++....|. .++
T Consensus 118 ~~n~~vr~lAL~~L~~i~---~~~----~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~------------~v~ 178 (618)
T 1w63_A 118 HSTQFVQGLALCTLGCMG---SSE----MCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPE------------LME 178 (618)
T ss_dssp CSSSHHHHHHHHHHHHHC---CHH----HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGG------------GGG
T ss_pred CCCHhHHHHHHHHHHhcC---CHH----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChH------------HHH
Confidence 445556677888887765 333 3456677788899999999999887778888876541 111
Q ss_pred HHHHHHHHHHHhhhccccCCCCCCcchHHHHHHHHHHHhhhCch---hhhHhhHHHHHHHHHHHHHhhccCCCCCCccch
Q psy5930 1850 HLYVCVSKVIYEGLSNYEKNPTATCSTLYGTVMMLKAACMNHPA---YVDRFILEFMRVIQRMAREHIATSTADAPQQVG 1926 (2426)
Q Consensus 1850 ~f~~~l~~~i~e~L~~~~~~~~~~~~~~~~~l~lL~~~~~~~p~---~iD~~l~~lmk~l~kl~keHl~~~~~~~~~~~~ 1926 (2426)
.|...+. +-|.+ + ......+++.+|..++.++|+ .+..++|.+++.|..++..-..+.. .......
T Consensus 179 ~~~~~l~----~lL~D--~----d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~-~~~~~~~ 247 (618)
T 1w63_A 179 MFLPATK----NLLNE--K----NHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEH-DVSGISD 247 (618)
T ss_dssp GGGGGTT----TSTTC--C----CHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTT-CSSSSSC
T ss_pred HHHHHHH----HHhCC--C----CHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccc-cccCCCC
Confidence 2222222 22322 1 134555778889999988886 4456678888887765441111110 0000011
Q ss_pred HHHHHHHHHHHhHhhhcCCHHHHHHHHHHHHHHHhc-----cCCCHHHHHHHHHHHHHHhhccccCCCCCCChhHHHHHH
Q psy5930 1927 GELLIYCLDLVKTRFCSMSQETRKQFIGTIILGLID-----KTPDIKVMKAIIKMTEEWLKVNKVEQNNVPNLKEKCIIL 2001 (2426)
Q Consensus 1927 ~~ll~~~leLl~~Rv~~lg~d~Rr~fls~l~~~Lie-----kS~d~~ll~~Il~iv~~Wv~~~~~~~~~~PtlKEKa~lL 2001 (2426)
.-+...+++++.. +..-.++..+.++..+.. ++. |+.+..++...++.+-.+ ...|.+++.+ .
T Consensus 248 ~~~q~~il~~L~~-l~~~~~~~~~~~~~~L~~-l~~~~~~~~~~~~aV~~ea~~~i~~l--------~~~~~l~~~a--~ 315 (618)
T 1w63_A 248 PFLQVRILRLLRI-LGRNDDDSSEAMNDILAQ-VATNTETSKNVGNAILYETVLTIMDI--------KSESGLRVLA--I 315 (618)
T ss_dssp HHHHHHHHHHHHH-HTTTCHHHHHTTHHHHHH-HHHTSCCSSTHHHHHHHHHHHHHHHS--------CCCHHHHHHH--H
T ss_pred ChHHHHHHHHHHH-hCCCCHHHHHHHHHHHHH-HHhccccccchHHHHHHHHHHHHHhc--------CCCHHHHHHH--H
Confidence 1233456666653 333344556666665444 543 223345555555554442 1124444432 2
Q ss_pred HHHHHHHhhcCccHHHHHHHHHHHHhcCCcccCchhhhchhHHHhhccCCCChHHHHHHHHHHhhhh
Q psy5930 2002 VKLMHFVEKRFPDLNTMFLEIVLYVYMDENLKNSELVTKLEPAFLSGLRCSNPALRAKFFQLLNGSI 2068 (2426)
Q Consensus 2002 ~KM~~fe~r~~~~L~~~flelV~~Iy~d~~~~~tElt~rLE~aFL~Glrs~d~~iR~kF~~i~d~sl 2068 (2426)
..+..|...+++.+.---+.-+..+-.. ..++..+.-..++--+..+|+.||++=++++-+-.
T Consensus 316 ~~L~~~L~~~d~~vr~~aL~~L~~i~~~----~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~ 378 (618)
T 1w63_A 316 NILGRFLLNNDKNIRYVALTSLLKTVQT----DHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALV 378 (618)
T ss_dssp HHHHHHHTCSSTTTHHHHHHHHHHHHHH----HHHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHhh----CHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHc
Confidence 3444444445555444444444444221 12333344445666678889999998888765443
No 39
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=82.86 E-value=1.4e+02 Score=39.69 Aligned_cols=347 Identities=14% Similarity=0.130 Sum_probs=179.0
Q ss_pred HHHHHHHHHHHHHHhcchhHHHhHHHHHHH---HHHHHHHHHHHhhcCCCCCCcccccccCCCChH---HHHHHHHHhhc
Q psy5930 663 RNTHQNALTGIFMVYLIKELRKDSLLYTVL---VVRHYTLVAITQQTGPFPLYGKSALLEGTMDPL---VLIDAIAVILG 736 (2426)
Q Consensus 663 ~~~~~~ll~~~f~a~~~~~l~~~a~~f~~~---v~rhf~l~~i~~~~~~~~~~~~~~~~~~~ld~~---vl~DAi~~~l~ 736 (2426)
.+..++++.-++.+.....+.-++..++.+ -.|....+.+...+.. ++. ..+.++..-|.
T Consensus 52 ~~~l~kli~~~~~G~d~~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~--------------~~e~~~l~in~l~kDL~ 117 (618)
T 1w63_A 52 CRNVAKLLYMHMLGYPAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDE--------------RQDVHLLMTNCIKNDLN 117 (618)
T ss_dssp HHHHHHHHHHHHTTCCCGGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCCCcchHHHHHHHHcCCchHHHHHHHHHHHHHhCC--------------CcHHHHHHHHHHHHhcC
Confidence 344566666555555555555555555443 2455555555554332 233 37899999999
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHhhCCchhhcchhhHHHHHHHHHHhccCchhhhhHhHHHHHHHHHHhchHHHHHHHHH
Q psy5930 737 HEDKELCKPGYIALKCIMETATCITGSIENACNLPLMEYLAERMCNLCYERAWYAKLGGCYAIKFFYNTMAIKWVYSHMF 816 (2426)
Q Consensus 737 ~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~p~~~~L~~rf~~~Cy~~~w~~K~gG~~gi~~l~~~~~~~wl~~~~~ 816 (2426)
+.++-++-.|..++..+ ++.+ +.+++...+..++-++..|-|..++.++.-+....|
T Consensus 118 ~~n~~vr~lAL~~L~~i--------~~~~------~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p--------- 174 (618)
T 1w63_A 118 HSTQFVQGLALCTLGCM--------GSSE------MCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVP--------- 174 (618)
T ss_dssp CSSSHHHHHHHHHHHHH--------CCHH------HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCG---------
T ss_pred CCCHhHHHHHHHHHHhc--------CCHH------HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCh---------
Confidence 99999998888888766 2222 346777777888888999999999999998887655
Q ss_pred HHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhhhhhhhhHHHHHHHHhhhc-----------CC
Q psy5930 817 VFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAETLTVQSKALSEVTNELTRNI-----------TL 885 (2426)
Q Consensus 817 ~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~eL-----------~s 885 (2426)
+.++.++-.+.++=.|-..++...|-.++..+. . . .++....-.+-...++..|..-+ ..
T Consensus 175 ~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~---~-~-----~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~ 245 (618)
T 1w63_A 175 ELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMC---E-R-----SPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGI 245 (618)
T ss_dssp GGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHC---C-S-----HHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSS
T ss_pred HHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHH---H-h-----ChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCC
Confidence 223334444555555554555544444443332 1 1 00100000111222222221100 13
Q ss_pred CChHHHHHHHHHHHHHHHHhCCchhhccccchhhhhccCCCCccccccCchhhhHhhhhhhhhhcccCCCccccCcchhh
Q psy5930 886 PNDLLREQSMYLLQVFAETQGKSVVQVMEPHKDVLADIIPPKKLLIRNHSANAQIGLMEGNTFCQSLTPRLFTTDMSIHE 965 (2426)
Q Consensus 886 ~n~~VR~~aq~~L~~lae~t~~~v~ell~p~k~~Ll~~I~~Kpl~lRalpf~~QIG~idaitfcl~L~p~~l~~~~~~~e 965 (2426)
+++..+-.+.++|..+... +....+-+.+.=..++.+... +|+-...... +|+...+.+.+ + .+
T Consensus 246 ~~~~~q~~il~~L~~l~~~-~~~~~~~~~~~L~~l~~~~~~----~~~~~~aV~~---ea~~~i~~l~~-----~---~~ 309 (618)
T 1w63_A 246 SDPFLQVRILRLLRILGRN-DDDSSEAMNDILAQVATNTET----SKNVGNAILY---ETVLTIMDIKS-----E---SG 309 (618)
T ss_dssp SCHHHHHHHHHHHHHHTTT-CHHHHHTTHHHHHHHHHTSCC----SSTHHHHHHH---HHHHHHHHSCC-----C---HH
T ss_pred CCChHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHhcccc----ccchHHHHHH---HHHHHHHhcCC-----C---HH
Confidence 5777777666666666532 111111111111122221111 1221122222 33333333332 1 12
Q ss_pred HHHHHHHH-HHhhccCchhhhcCCCCCCccccchHHHHHHHHHHhhh-cCCchhhHHHHHHHHhhcCCCHHHHHHHHHHH
Q psy5930 966 HSSFFQEI-TNICESSDQALMKLPCYKPISSLVPLRKAAMRALASWH-YVPNCSQKIFNTLFAALERPNPELQEAAFQAM 1043 (2426)
Q Consensus 966 l~rll~E~-l~LadadD~~l~k~~~~k~~~~lv~LRv~ci~lL~~~~-~~~~~~~rIi~vfFKsL~s~s~ei~~aA~~gL 1043 (2426)
+.....+. ..+....|. ++|-+++..|..-. ..|+.-++....+|.+|+.++.+|...|-+.|
T Consensus 310 l~~~a~~~L~~~L~~~d~---------------~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL 374 (618)
T 1w63_A 310 LRVLAINILGRFLLNNDK---------------NIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAMELS 374 (618)
T ss_dssp HHHHHHHHHHHHHTCSST---------------TTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCC---------------chHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccCCChhHHHHHHHHH
Confidence 21111111 112211121 46777777665332 34444445667899999999999999999999
Q ss_pred HHHHccCCCChhhHHHhhHHHHhhhcCCCCCCHhHHHHHHHhhhhCC
Q psy5930 1044 KTFVNGSPIDLKSVYEVMKPLLLTLGDYRNLNLVTARKLSYIVQPFP 1090 (2426)
Q Consensus 1044 k~vL~~~~~~~e~L~q~LRPiL~nLsD~k~Ltv~gLegLarLLeLL~ 1090 (2426)
-....+.+. +.+...|..-+.. +...+-...++.++++-+-++
T Consensus 375 ~~l~~~~nv--~~iv~eL~~~l~~--~d~e~r~~~v~~I~~la~k~~ 417 (618)
T 1w63_A 375 FALVNGNNI--RGMMKELLYFLDS--CEPEFKADCASGIFLAAEKYA 417 (618)
T ss_dssp HHHCCSSST--HHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHSSC
T ss_pred HHHcccccH--HHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHhC
Confidence 888766543 3333333333222 223344455566666655543
No 40
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=82.32 E-value=35 Score=44.16 Aligned_cols=271 Identities=10% Similarity=0.074 Sum_probs=141.2
Q ss_pred HHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHhhCCchhhcchhhH-HHHHHHHHHhccCc-hhhhhHhHHHHHHHHHH
Q psy5930 727 LIDAIAVILGHEDKELCKPGYIALKCIMETATCITGSIENACNLPLM-EYLAERMCNLCYER-AWYAKLGGCYAIKFFYN 804 (2426)
Q Consensus 727 l~DAi~~~l~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~p~~-~~L~~rf~~~Cy~~-~w~~K~gG~~gi~~l~~ 804 (2426)
.+..++..|.+++.+++..|..++..+... +.... .-.+. ..+++.++.+..++ .+..+..++.++.-+..
T Consensus 88 ~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~-----~~~~~--~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~ 160 (530)
T 1wa5_B 88 ELPQMTQQLNSDDMQEQLSATVKFRQILSR-----EHRPP--IDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIAS 160 (530)
T ss_dssp CHHHHHHHHSCSSHHHHHHHHHHHHHHTCC-----SSSCS--HHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-----CCCcc--HHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhC
Confidence 478888899999988888777777655321 00000 00111 23556777777766 78888888888877766
Q ss_pred hch--HHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhhhhhhhhHHHHHHHHhhh
Q psy5930 805 TMA--IKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAETLTVQSKALSEVTNELTRN 882 (2426)
Q Consensus 805 ~~~--~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e 882 (2426)
.-+ ...+. ....+..|+..|++- ...+++.|-.+|..+. ... + +.... -.-..++..|+.-
T Consensus 161 ~~~~~~~~~~--~~g~i~~Lv~lL~~~----~~~vr~~A~~aL~~l~---~~~---~---~~~~~--~~~~~~l~~L~~l 223 (530)
T 1wa5_B 161 GTSAQTKVVV--DADAVPLFIQLLYTG----SVEVKEQAIWALGNVA---GDS---T---DYRDY--VLQCNAMEPILGL 223 (530)
T ss_dssp SCHHHHHHHH--HTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHH---TTC---H---HHHHH--HHHTTCHHHHHHG
T ss_pred CCHHHHHHHH--HCCCHHHHHHHHcCC----CHHHHHHHHHHHHHHh---CCC---c---cchHH--HHHcCcHHHHHHH
Confidence 432 22222 235677788777753 2344555555554443 111 0 00000 0011245556666
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhCCchh-hccccchhhhhccCCCCccccccCchhhhHhhhhhhhhhcccCCCccccCc
Q psy5930 883 ITLPNDLLREQSMYLLQVFAETQGKSVV-QVMEPHKDVLADIIPPKKLLIRNHSANAQIGLMEGNTFCQSLTPRLFTTDM 961 (2426)
Q Consensus 883 L~s~n~~VR~~aq~~L~~lae~t~~~v~-ell~p~k~~Ll~~I~~Kpl~lRalpf~~QIG~idaitfcl~L~p~~l~~~~ 961 (2426)
+.+++..||..|-.+|..++...+.... ......-..|...+ +.-.-..+...+.++.++..-.+....
T Consensus 224 l~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL-------~~~d~~v~~~a~~~L~~L~~~~~~~~~--- 293 (530)
T 1wa5_B 224 FNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-------YSMDTETLVDACWAISYLSDGPQEAIQ--- 293 (530)
T ss_dssp GGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-------TCCCHHHHHHHHHHHHHHHSSCHHHHH---
T ss_pred hccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHH-------cCCCHHHHHHHHHHHHHHhCCCHHHHH---
Confidence 6678899999999999888863311111 11111111111111 111112333333333333321110000
Q ss_pred chhhHH--HHHHHHHHhhccCchhhhcCCCCCCccccchHHHHHHHHHHhhhcC-Cchh-----hHHHHHHHHhhcCCCH
Q psy5930 962 SIHEHS--SFFQEITNICESSDQALMKLPCYKPISSLVPLRKAAMRALASWHYV-PNCS-----QKIFNTLFAALERPNP 1033 (2426)
Q Consensus 962 ~~~el~--rll~E~l~LadadD~~l~k~~~~k~~~~lv~LRv~ci~lL~~~~~~-~~~~-----~rIi~vfFKsL~s~s~ 1033 (2426)
.+. ..+..++.+....| ...|..|+++|...... ++.. ..++..+.+.|.+.++
T Consensus 294 ---~~~~~~~v~~Lv~lL~~~~---------------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~ 355 (530)
T 1wa5_B 294 ---AVIDVRIPKRLVELLSHES---------------TLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKE 355 (530)
T ss_dssp ---HHHHTTCHHHHHHGGGCSC---------------HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCH
T ss_pred ---HHHhcCcHHHHHHHHCCCC---------------hhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCH
Confidence 000 01111122221111 34788888888755433 2222 2577788999999999
Q ss_pred HHHHHHHHHHHHHHcc
Q psy5930 1034 ELQEAAFQAMKTFVNG 1049 (2426)
Q Consensus 1034 ei~~aA~~gLk~vL~~ 1049 (2426)
++..+|-.+|..+..+
T Consensus 356 ~vr~~A~~aL~~l~~~ 371 (530)
T 1wa5_B 356 NIKKEACWTISNITAG 371 (530)
T ss_dssp HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHcC
Confidence 9999999999997654
No 41
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=80.84 E-value=45 Score=43.28 Aligned_cols=316 Identities=14% Similarity=0.105 Sum_probs=159.5
Q ss_pred HHHHHHHhhcCC-ChhhhhHHHHHHHHHHHHHHHhhCCchhhcchhhHH-HHHHHHHHhccCchhhhhHhHHHHHHHHHH
Q psy5930 727 LIDAIAVILGHE-DKELCKPGYIALKCIMETATCITGSIENACNLPLME-YLAERMCNLCYERAWYAKLGGCYAIKFFYN 804 (2426)
Q Consensus 727 l~DAi~~~l~~~-~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~p~~~-~L~~rf~~~Cy~~~w~~K~gG~~gi~~l~~ 804 (2426)
++..++..|.+. ++++...|..+|..+.. |+.+... .+++ -..+.++++...+.-..+..++.++.-+..
T Consensus 120 ~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~------~~~~~~~--~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~ 191 (529)
T 3tpo_A 120 LIPKFVSFLGKTDCSPIQFESAWALTNIAS------GTSEQTK--AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAG 191 (529)
T ss_dssp HHHHHHHHHTCTTCHHHHHHHHHHHHHHHT------SCHHHHH--HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHcCCCCHHHHHHHHHHHHHHHc------CCHHHHH--HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 678889999754 56777777778776643 3322210 1111 244566677777777777777777776665
Q ss_pred hch--HHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhhhhhhhhHHHHHHHHhhh
Q psy5930 805 TMA--IKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAETLTVQSKALSEVTNELTRN 882 (2426)
Q Consensus 805 ~~~--~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e 882 (2426)
.-+ ...+.+ -..+..|+..|.+...+... ......+...+-..|....... . -.....++..|+.-
T Consensus 192 ~~~~~r~~i~~--~g~i~~Ll~lL~~~~~~~~~--~~~~~~a~~~L~nl~~~~~~~~-~-------~~~~~~~lp~L~~L 259 (529)
T 3tpo_A 192 AGSAFRDLVIK--HGAIDPLLALLAVPDLSTLA--CGYLRNLTWTLSNLCRNKNPAP-P-------LDAVEQILPTLVRL 259 (529)
T ss_dssp TCHHHHHHHHH--TTCHHHHHHTTCSSCGGGSC--HHHHHHHHHHHHHHHCCCTTCC-C-------HHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHH--cCCcHHHHHHHhccchhHhH--HHHHHHHHHHHHHHHhcccchh-h-------HHHHhhHHHHHHHH
Confidence 432 233332 34677788888764432211 1122223333333333221111 0 11234456677778
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhCCchhhcccc-chhhhhccCCCCccccccCchhhhHhhhhhhhhhcccCCCccccCc
Q psy5930 883 ITLPNDLLREQSMYLLQVFAETQGKSVVQVMEP-HKDVLADIIPPKKLLIRNHSANAQIGLMEGNTFCQSLTPRLFTTDM 961 (2426)
Q Consensus 883 L~s~n~~VR~~aq~~L~~lae~t~~~v~ell~p-~k~~Ll~~I~~Kpl~lRalpf~~QIG~idaitfcl~L~p~~l~~~~ 961 (2426)
|.+++..|+..|-.+|..++....--...+... .-..|..- ++.-....|...+.++..+.+- +
T Consensus 260 L~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~l-------L~~~~~~v~~~a~~aL~nl~~~-------~- 324 (529)
T 3tpo_A 260 LHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKL-------LGATELPIVTPALRAIGNIVTG-------T- 324 (529)
T ss_dssp TTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHH-------HTCSCHHHHHHHHHHHHHHTTS-------C-
T ss_pred hcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHH-------hcCCChhHHHHHHHHHHHHHcc-------c-
Confidence 889999999998888888775221100001000 00011100 1111223333333333332221 1
Q ss_pred chhhHHHHHHHHHHhhccCchhhhcCCCCCCccccchHHHHHHHHHHhhh-cCCchhh-----HHHHHHHHhhcCCCHHH
Q psy5930 962 SIHEHSSFFQEITNICESSDQALMKLPCYKPISSLVPLRKAAMRALASWH-YVPNCSQ-----KIFNTLFAALERPNPEL 1035 (2426)
Q Consensus 962 ~~~el~rll~E~l~LadadD~~l~k~~~~k~~~~lv~LRv~ci~lL~~~~-~~~~~~~-----rIi~vfFKsL~s~s~ei 1035 (2426)
++....+.+. .+= +.+.+.-... =...|..|..+|+-.- ..++..+ .++..+...|.+.+.++
T Consensus 325 --~~~~~~i~~~----g~l-~~L~~LL~~~----~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v 393 (529)
T 3tpo_A 325 --DEQTQKVIDA----GAL-AVFPSLLTNP----KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKT 393 (529)
T ss_dssp --HHHHHHHHHT----TGG-GGHHHHTTCS----SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHH
T ss_pred --hHHHHHHhhc----ccH-HHHHHHHcCC----CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHH
Confidence 1111111110 000 0011110000 0235666666666332 3333333 56777888999999999
Q ss_pred HHHHHHHHHHHHccCCCC--hhhHHHh-hHHHHhhhcC-CCCCCHhHHHHHHHhhhh
Q psy5930 1036 QEAAFQAMKTFVNGSPID--LKSVYEV-MKPLLLTLGD-YRNLNLVTARKLSYIVQP 1088 (2426)
Q Consensus 1036 ~~aA~~gLk~vL~~~~~~--~e~L~q~-LRPiL~nLsD-~k~Ltv~gLegLarLLeL 1088 (2426)
+..|-.+|.....+.... ...+.++ +.|+..-|.. ..++-...|++|..+++.
T Consensus 394 ~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~ 450 (529)
T 3tpo_A 394 QKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQA 450 (529)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 999999999987654321 2234445 7776555542 233445677888877754
No 42
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=80.28 E-value=39 Score=37.52 Aligned_cols=154 Identities=12% Similarity=0.080 Sum_probs=95.9
Q ss_pred HHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHhhCCchhhcchhhH-HHHHHHHHHhccCchhhhhHhHHHHHHHHHHh
Q psy5930 727 LIDAIAVILGHEDKELCKPGYIALKCIMETATCITGSIENACNLPLM-EYLAERMCNLCYERAWYAKLGGCYAIKFFYNT 805 (2426)
Q Consensus 727 l~DAi~~~l~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~p~~-~~L~~rf~~~Cy~~~w~~K~gG~~gi~~l~~~ 805 (2426)
.+.+++..|.+++.+++..+..++..+.. ++.+.. -.++ ....+.++.+..++....+..+|.+|.-|...
T Consensus 55 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~------~~~~~~--~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 126 (210)
T 4db6_A 55 ALPALVQLLSSPNEQILQEALWALSNIAS------GGNEQI--QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 126 (210)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTT------SCHHHH--HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhc------CCcHHH--HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcC
Confidence 78899999999999999988888876632 222211 1111 12446666777777788888888888888754
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhhhhhhhhHHHHHHHHhhhcCC
Q psy5930 806 MAIKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAETLTVQSKALSEVTNELTRNITL 885 (2426)
Q Consensus 806 ~~~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~eL~s 885 (2426)
-+..--.-.....+..|+..+++- ...+...|-.+|..+. ... ++ ...... -...+..|+.-+.+
T Consensus 127 ~~~~~~~~~~~~~i~~L~~ll~~~----~~~v~~~a~~aL~~l~---~~~--~~---~~~~~~---~~g~i~~L~~ll~~ 191 (210)
T 4db6_A 127 GNEQIQAVIDAGALPALVQLLSSP----NEQILQEALWALSNIA---SGG--NE---QKQAVK---EAGALEKLEQLQSH 191 (210)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCS----CHHHHHHHHHHHHHHH---TSC--HH---HHHHHH---HTTHHHHHHHGGGC
T ss_pred CHHHHHHHHHcCcHHHHHHHHcCC----CHHHHHHHHHHHHHHH---cCC--cH---HHHHHH---HCCCHHHHHHHHhC
Confidence 432211112356888888888863 2344545554444443 211 00 000000 11356667777788
Q ss_pred CChHHHHHHHHHHHHHHH
Q psy5930 886 PNDLLREQSMYLLQVFAE 903 (2426)
Q Consensus 886 ~n~~VR~~aq~~L~~lae 903 (2426)
++..||+.|..+|..+++
T Consensus 192 ~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 192 ENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp SCHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 999999999999988864
No 43
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=79.71 E-value=58 Score=36.82 Aligned_cols=156 Identities=15% Similarity=0.065 Sum_probs=99.6
Q ss_pred HHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHhhCCchhhcchhhH-HHHHHHHHHhccCchhhhhHhHHHHHHHHHHh
Q psy5930 727 LIDAIAVILGHEDKELCKPGYIALKCIMETATCITGSIENACNLPLM-EYLAERMCNLCYERAWYAKLGGCYAIKFFYNT 805 (2426)
Q Consensus 727 l~DAi~~~l~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~p~~-~~L~~rf~~~Cy~~~w~~K~gG~~gi~~l~~~ 805 (2426)
.++.++..|.+++.+++..+..++..+.. ++.+. +-.+. ....+.+++++.+..+..+..++.++..|...
T Consensus 87 ~i~~l~~ll~~~~~~v~~~a~~~L~~l~~------~~~~~--~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~ 158 (252)
T 4hxt_A 87 GVEVLVKLLTSTDSEVQKEAARALANIAS------GPDEA--IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG 158 (252)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTT------SCHHH--HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHc------CCHHH--HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 68889999999999999999888887742 11111 11111 23567777888888899999999999888765
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhh-hhhhhhHHHHHHHHhhhcC
Q psy5930 806 MAIKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAETL-TVQSKALSEVTNELTRNIT 884 (2426)
Q Consensus 806 ~~~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~lv~eL~ 884 (2426)
-+..--.-.+...+..|+..+.+-. ..+...|-.+|..+. ... + +.. ... -...+..|+.-+.
T Consensus 159 ~~~~~~~~~~~~~i~~L~~ll~~~~----~~v~~~a~~~L~~l~---~~~---~---~~~~~l~---~~~~i~~L~~ll~ 222 (252)
T 4hxt_A 159 PDEAIKAIVDAGGVEVLVKLLTSTD----SEVQKEAARALANIA---SGP---T---SAIKAIV---DAGGVEVLQKLLT 222 (252)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSC----HHHHHHHHHHHHHHT---TSB---H---HHHHHHH---HTTHHHHHHHGGG
T ss_pred CHHHHHHHHHCcCHHHHHHHHCCCC----HHHHHHHHHHHHHHH---cCC---H---HHHHHHH---HCCCHHHHHHHHC
Confidence 4332112223568888888887533 234444444443332 211 0 100 000 1225666777778
Q ss_pred CCChHHHHHHHHHHHHHHHHhC
Q psy5930 885 LPNDLLREQSMYLLQVFAETQG 906 (2426)
Q Consensus 885 s~n~~VR~~aq~~L~~lae~t~ 906 (2426)
+++..||+.|-.+|..++...+
T Consensus 223 ~~~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 223 STDSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp CSCHHHHHHHHHHHHHHHHTCB
T ss_pred CCcHHHHHHHHHHHHHHHcCCC
Confidence 8999999999999999987443
No 44
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=77.62 E-value=75 Score=44.27 Aligned_cols=244 Identities=10% Similarity=0.087 Sum_probs=128.8
Q ss_pred HHH-HHHHHHHHHHHccChhhHHHHHHhhHHHHHHHHhh---cc---cH-----------HHHhHHhhcCC---------
Q psy5930 277 EEK-EVLEHFAGVFSLMTPQTFREIFASTIDYMVDRMAH---NY---TL-----------QVISNSFLVTR--------- 329 (2426)
Q Consensus 277 eek-e~le~fa~vF~~ld~~~F~Ei~~~~i~~l~e~~~~---n~---~L-----------~~i~q~fL~~~--------- 329 (2426)
+++ .++|.++.+...+++..|.+.+..-|+.+.+.+.+ ++ .. -.|.+.+-...
T Consensus 585 ~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~ 664 (963)
T 2x19_B 585 SQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPE 664 (963)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC-------
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccc
Confidence 344 45899999988887788999999988888877642 21 11 12222221100
Q ss_pred ----------CChhhHHHHHHHHHHHHhhhcCCCCccchhHHHHHHHHHhhhcccCCCCCcccccchHHHHHHHHHHHHH
Q psy5930 330 ----------DTSPVFATVLVEYLLEHMEEMGNGNVERSNLCLKLFKLVFGSVSFYPAENEHMLRPHLHQIVNRSMELAM 399 (2426)
Q Consensus 330 ----------~~s~~F~~ill~fL~~~l~~lg~~~~~~~~~~lrLfkl~F~sv~~~~~~nE~vl~phl~~ii~~~~~~a~ 399 (2426)
.....+..-+++-+..=++.-.. +..-.....++|+-.+.+ ++. . ..|+++.++..-+.--.
T Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~v~e~~~~~l~~~~~~---~~~---~-~~~~l~~~~~~l~~~~~ 736 (963)
T 2x19_B 665 LRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLN-DAQVVEAVCAIFEKSVKT---LLD---D-FAPMVPQLCEMLGRMYS 736 (963)
T ss_dssp --------CCCHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHH---SSS---T-TGGGHHHHHHHHHHHHH
T ss_pred cccCCCCCCCCchHHHHHHHHHHHHHHHHhccC-chHHHHHHHHHHHHHHHh---hcc---c-ccccHHHHHHHHHHHHH
Confidence 00011222222222222222111 212222223444443333 221 1 35777777665544434
Q ss_pred hhcCchhHHHHHHHHHHhhcCCchhhHhhhHHHHHHHHHHHHHHhhh-cC-ccchhhhHHhhhh----hccccccccccC
Q psy5930 400 TAKEPYNYFLLLRALFRSIGGGSHDLLYQEFLPLLRNLLQGLNSLQS-GL-HKQQMKDLFVELC----LTVPVRLSSLLP 473 (2426)
Q Consensus 400 ~a~ep~~Y~~LLR~lFRSiggg~fe~LYkeilPLLp~lLe~Ln~Ll~-~~-~~~~~RdL~VELC----LTVPvRLS~LLP 473 (2426)
..++| .++.|+.++-+..|.+. .....+-+++..+++..-.++. .. ..|..|+=|.+|+ -..|.-+-+ -|
T Consensus 737 ~~~~~-~~l~l~~~li~~f~~~~--~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~-~~ 812 (963)
T 2x19_B 737 TIPQA-SALDLTRQLVHIFAHEP--AHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLC-ER 812 (963)
T ss_dssp HSCCH-HHHHHHHHHHHHHTTCT--TTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGC-TT
T ss_pred cCCcc-HHHHHHHHHHHHhCCCc--chHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcC-Cc
Confidence 44555 68899999988766542 1112233455555555555543 12 2355555554443 334433211 36
Q ss_pred C-cchhhHHHHHHhcC-CchhHHhhhhhhhhhhccCC-cchhhhccchHHHHHHHHHHhhcC
Q psy5930 474 Y-LPMLMDPLVSALNG-SSTLISQGLRTLELCVDNLQ-PDFLYDHIQPVRADLMQALWRSLR 532 (2426)
Q Consensus 474 y-L~~LM~PLV~AL~~-~~eLvsqGLRTLElcVDNLt-pdfLdp~~~pV~~elm~ALw~~Lk 532 (2426)
+ +..+|.=++.+|+. ..+.+..|+..|.=.+.+.. ++.....+.+....++.++...+.
T Consensus 813 ~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 874 (963)
T 2x19_B 813 LDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIG 874 (963)
T ss_dssp SCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6 88899999999986 45688899998877776543 344444444444455544444444
No 45
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=76.90 E-value=61 Score=43.23 Aligned_cols=257 Identities=14% Similarity=0.167 Sum_probs=141.2
Q ss_pred CCccHHHHHHHHHHHHHHHhcCChhHHHHhhHHHHHHHHHHH--hcCchhHHHHHHHHHHHHHhcCCCCCCCCCccCchh
Q psy5930 1769 PTANLGNISIALELLTLLITILDEGQILHIIKPLQRGLVACI--SSSITKVIRLVHALLCRLMSTFPTEPISSNVASKRE 1846 (2426)
Q Consensus 1769 ~~~n~~~~~naLevL~il~~~~~~~~il~nl~~lq~lL~kcl--~~~n~~i~~~l~~ll~rll~~~p~~~~~~~~~~~~~ 1846 (2426)
.+.|....+.||..|+-+- .++ ..+.+-..+.+|+ ...++-|.+...-.+-+++...|..- . +
T Consensus 121 ~~~n~~ir~lALr~L~~i~---~~e----~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~------~-~- 185 (621)
T 2vgl_A 121 ASRNPTFMGLALHCIANVG---SRE----MAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLV------P-M- 185 (621)
T ss_dssp HSCCHHHHHHHHHHHHHHC---CHH----HHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC------C-C-
T ss_pred CCCCHHHHHHHHHHhhccC---CHH----HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhc------C-c-
Confidence 4556667788888887763 333 4456667788888 77788898876666677777655110 0 0
Q ss_pred hHHHHHHHHHHHHHhhhccccCCCCCCcchHHHHHHHHHHHhhhCchhhhHhhHHHHHHHHHHHHHhhcc-CCCCCCccc
Q psy5930 1847 ELDHLYVCVSKVIYEGLSNYEKNPTATCSTLYGTVMMLKAACMNHPAYVDRFILEFMRVIQRMAREHIAT-STADAPQQV 1925 (2426)
Q Consensus 1847 e~~~f~~~l~~~i~e~L~~~~~~~~~~~~~~~~~l~lL~~~~~~~p~~iD~~l~~lmk~l~kl~keHl~~-~~~~~~~~~ 1925 (2426)
..|...+.+.+.| ++ .+.+.++++++..+|..+|+....++|.+++.|.++.-..-.+ ..-...+..
T Consensus 186 --~~~~~~l~~lL~d------~d----~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~ 253 (621)
T 2vgl_A 186 --GDWTSRVVHLLND------QH----LGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVP 253 (621)
T ss_dssp --CSCHHHHHHHTTC------SC----HHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEE
T ss_pred --hhHHHHHHHHhCC------CC----ccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCC
Confidence 1344445444433 11 4556678899999999999877788898888888765321000 000000001
Q ss_pred hHHHHHHHHHHHhHhhhcCC-HHHHHHHHHHHHHHHhcc---CC--------C--HHHHHHHHHHHHHHhhccccCCCCC
Q psy5930 1926 GGELLIYCLDLVKTRFCSMS-QETRKQFIGTIILGLIDK---TP--------D--IKVMKAIIKMTEEWLKVNKVEQNNV 1991 (2426)
Q Consensus 1926 ~~~ll~~~leLl~~Rv~~lg-~d~Rr~fls~l~~~Liek---S~--------d--~~ll~~Il~iv~~Wv~~~~~~~~~~ 1991 (2426)
..=+-+++++++.. +...+ ++.++.+...+-. ++.+ ++ + ..++-..++.+-.+ +..
T Consensus 254 ~~w~qi~il~ll~~-~~~~~d~~~~~~l~~~L~~-il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l--------~~~ 323 (621)
T 2vgl_A 254 APWLSVKLLRLLQC-YPPPEDPAVRGRLTECLET-ILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHH--------DSE 323 (621)
T ss_dssp SHHHHHHHHHHGGG-SSSCSSHHHHHHHHHHHHH-HHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHH--------CCC
T ss_pred CchHHHHHHHHHHH-hCCCCCHHHHHHHHHHHHH-HHHhhccCcccccccccchHHHHHHHHHHHHHhc--------CCc
Confidence 12246677787764 33232 3566655443222 3321 11 1 13433333333322 123
Q ss_pred CChhHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHhcCCcccCchhhhchhHHHhhccC-CCChHHHHHHHHHHhh
Q psy5930 1992 PNLKEKCIILVKLMHFVEKRFPDLNTMFLEIVLYVYMDENLKNSELVTKLEPAFLSGLR-CSNPALRAKFFQLLNG 2066 (2426)
Q Consensus 1992 PtlKEKa~lL~KM~~fe~r~~~~L~~~flelV~~Iy~d~~~~~tElt~rLE~aFL~Glr-s~d~~iR~kF~~i~d~ 2066 (2426)
|.+.+++ ..++..|...+++.+.-.=|+.+..+-.... ..+...+.-..|+.-++ ++|+.||.+=++++-+
T Consensus 324 ~~~~~~~--~~~L~~~L~~~~~niry~aL~~l~~l~~~~~--~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~ 395 (621)
T 2vgl_A 324 PNLLVRA--CNQLGQFLQHRETNLRYLALESMCTLASSEF--SHEAVKTHIETVINALKTERDVSVRQRAVDLLYA 395 (621)
T ss_dssp HHHHHHH--HHHHHHHSSCSCHHHHHHHHHHHHHHTTCTT--THHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHH--HHHHHHHhcCCCcchHHHHHHHHHHHHhccC--cHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHH
Confidence 4443332 2333344333444443333455555533210 12455666677888888 9999999987777543
No 46
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=76.43 E-value=1e+02 Score=34.69 Aligned_cols=232 Identities=17% Similarity=0.089 Sum_probs=123.2
Q ss_pred HHHHHhccCchhhhhHhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCC
Q psy5930 778 ERMCNLCYERAWYAKLGGCYAIKFFYNTMAIKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIK 857 (2426)
Q Consensus 778 ~rf~~~Cy~~~w~~K~gG~~gi~~l~~~~~~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~ 857 (2426)
+.++.+........+..++..|..+...-+...-.-.+..++..|+..+++-. ..+...|-.+|..+ +...
T Consensus 5 ~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~----~~v~~~a~~~L~~l---~~~~-- 75 (252)
T 4hxt_A 5 EKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTD----SEVQKEAARALANI---ASGP-- 75 (252)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC----HHHHHHHHHHHHHH---TTSC--
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCC----HHHHHHHHHHHHHH---HcCC--
Confidence 45556666666777777777777777655422222223467888888888743 33344444444333 2110
Q ss_pred CCCchhhhhhhhhh-HHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhCCchhhccccchhhhhccCCCCccccccCch
Q psy5930 858 EPVDAETLTVQSKA-LSEVTNELTRNITLPNDLLREQSMYLLQVFAETQGKSVVQVMEPHKDVLADIIPPKKLLIRNHSA 936 (2426)
Q Consensus 858 ~~~~~~~~~~~~~~-~~~~~~~lv~eL~s~n~~VR~~aq~~L~~lae~t~~~v~ell~p~k~~Ll~~I~~Kpl~lRalpf 936 (2426)
+ + ..... -...+..++.-+.+++..||+.|-.+|..++.... ..++.+
T Consensus 76 -~---~---~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~--------~~~~~~---------------- 124 (252)
T 4hxt_A 76 -D---E---AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD--------EAIKAI---------------- 124 (252)
T ss_dssp -H---H---HHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCH--------HHHHHH----------------
T ss_pred -h---H---HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH--------HHHHHH----------------
Confidence 0 1 00100 11246667777788999999999888888774111 011111
Q ss_pred hhhHhhhhhhhhhcccCCCccccCcchhhHHHHHHHHHHhhccCchhhhcCCCCCCccccchHHHHHHHHHHhhhcC-Cc
Q psy5930 937 NAQIGLMEGNTFCQSLTPRLFTTDMSIHEHSSFFQEITNICESSDQALMKLPCYKPISSLVPLRKAAMRALASWHYV-PN 1015 (2426)
Q Consensus 937 ~~QIG~idaitfcl~L~p~~l~~~~~~~el~rll~E~l~LadadD~~l~k~~~~k~~~~lv~LRv~ci~lL~~~~~~-~~ 1015 (2426)
.+-|.++.+.-++. .+| ..+|..|+.+|...... ++
T Consensus 125 -~~~~~i~~L~~~l~---------------------------~~~---------------~~~~~~a~~~L~~l~~~~~~ 161 (252)
T 4hxt_A 125 -VDAGGVEVLVKLLT---------------------------STD---------------SEVQKEAARALANIASGPDE 161 (252)
T ss_dssp -HHTTHHHHHHHHTT---------------------------CSC---------------HHHHHHHHHHHHHHTTSCHH
T ss_pred -HHCCCHHHHHHHHc---------------------------CCC---------------HHHHHHHHHHHHHHHcCCHH
Confidence 11233333322222 111 12455555555533322 22
Q ss_pred hh-----hHHHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCChhhHHH-hhHHHHhhhcCCC--CCCHhHHHHHHHhhh
Q psy5930 1016 CS-----QKIFNTLFAALERPNPELQEAAFQAMKTFVNGSPIDLKSVYE-VMKPLLLTLGDYR--NLNLVTARKLSYIVQ 1087 (2426)
Q Consensus 1016 ~~-----~rIi~vfFKsL~s~s~ei~~aA~~gLk~vL~~~~~~~e~L~q-~LRPiL~nLsD~k--~Ltv~gLegLarLLe 1087 (2426)
.+ ..++..+.+.|.+.++++...|-.+|.....+..-..+.+.+ +.-|.|..+-++. ++....+..|+.|..
T Consensus 162 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 162 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 21 247788889999999999999999999987643322233333 3334444443322 334445555555554
Q ss_pred hCCCc
Q psy5930 1088 PFPSS 1092 (2426)
Q Consensus 1088 LL~ny 1092 (2426)
--+++
T Consensus 242 ~~~~~ 246 (252)
T 4hxt_A 242 GGWLE 246 (252)
T ss_dssp TCBCC
T ss_pred CCCcc
Confidence 44433
No 47
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=75.41 E-value=64 Score=44.19 Aligned_cols=151 Identities=11% Similarity=0.064 Sum_probs=90.3
Q ss_pred HHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHhhCCchhhcch-hhHHHHHHHHHHhccCchhhhhHhHHHHHHHHHHh
Q psy5930 727 LIDAIAVILGHEDKELCKPGYIALKCIMETATCITGSIENACNL-PLMEYLAERMCNLCYERAWYAKLGGCYAIKFFYNT 805 (2426)
Q Consensus 727 l~DAi~~~l~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~-p~~~~L~~rf~~~Cy~~~w~~K~gG~~gi~~l~~~ 805 (2426)
.+..++..|.+++..+++.|..+|..+...... ....... ..+..|++.+.+ ++....+..++..+.-|...
T Consensus 151 ~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~----~~~i~~~~~~i~~Lv~~L~~---~~d~~vr~~Aa~aL~~Ls~~ 223 (780)
T 2z6g_A 151 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEAS----RHAIMRSPQMVSAIVRTMQN---TNDVETARCTSGTLHNLSHH 223 (780)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHH----HHHHTTCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChh----HHHHHhccChHHHHHHHHcC---CCCHHHHHHHHHHHHHHhCC
Confidence 677888888899999999998888877542110 0011111 133344444432 34666777777777776544
Q ss_pred chH-HHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhhhhhhhhH--HHHHHHHhhh
Q psy5930 806 MAI-KWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAETLTVQSKAL--SEVTNELTRN 882 (2426)
Q Consensus 806 ~~~-~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~lv~e 882 (2426)
-.. .-+. ....+..|+..|++-. ..+...|-.+|..+... . .. ..+.+ ...+..|+.-
T Consensus 224 ~~~~~~i~--~~g~I~~Lv~lL~~~~----~~v~~~A~~aL~nLa~~---~--~~--------~~~~v~~~g~v~~Lv~l 284 (780)
T 2z6g_A 224 REGLLAIF--KSGGIPALVNMLGSPV----DSVLFHAITTLHNLLLH---Q--EG--------AKMAVRLAGGLQKMVAL 284 (780)
T ss_dssp HHHHHHHH--HTTHHHHHHHHTTCSC----HHHHHHHHHHHHHHHHH---S--TT--------HHHHHHHTTHHHHHHHG
T ss_pred chhHHHHH--HcCCHHHHHHHHcCCC----HHHHHHHHHHHHHHhCC---C--hh--------hHHHHHHcCCHHHHHHH
Confidence 322 2222 2367888888887642 34455555555554432 1 00 01111 2356677777
Q ss_pred cCCCChHHHHHHHHHHHHHHH
Q psy5930 883 ITLPNDLLREQSMYLLQVFAE 903 (2426)
Q Consensus 883 L~s~n~~VR~~aq~~L~~lae 903 (2426)
|.+++..||+.|-.+|..++.
T Consensus 285 L~~~~~~v~~~a~~aL~~La~ 305 (780)
T 2z6g_A 285 LNKTNVKFLAITTDCLQILAY 305 (780)
T ss_dssp GGCCCHHHHHHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHHHHHhc
Confidence 888899999999999988874
No 48
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=74.96 E-value=9 Score=45.52 Aligned_cols=162 Identities=13% Similarity=0.066 Sum_probs=86.6
Q ss_pred hhhcchhhHHHHHHHHHHhccCchhhhhHhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHH
Q psy5930 765 ENACNLPLMEYLAERMCNLCYERAWYAKLGGCYAIKFFYNTMAIKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRN 844 (2426)
Q Consensus 765 ~~~~~~p~~~~L~~rf~~~Cy~~~w~~K~gG~~gi~~l~~~~~~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~ 844 (2426)
+...++|+- ..|....|..+..|.-.+.-+++..+..-..+-....+..+...++-.-.|....+...|-++
T Consensus 7 ~d~sklpl~--------e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~ 78 (278)
T 4ffb_C 7 VDYTTLPLE--------ERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVA 78 (278)
T ss_dssp ----CCCHH--------HHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHH
T ss_pred hhhhcCCHH--------HhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 456778843 468899999999999999888876643222111111111222222222235556666666666
Q ss_pred HHHHHHHHcCCCCCCCchhhhhhhhhhHHHHHHHHhhh-cCCCChHHHHHHHHHHHHHHHHhCCchhhccccchhhhhcc
Q psy5930 845 LKQLIVLCATPIKEPVDAETLTVQSKALSEVTNELTRN-ITLPNDLLREQSMYLLQVFAETQGKSVVQVMEPHKDVLADI 923 (2426)
Q Consensus 845 l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e-L~s~n~~VR~~aq~~L~~lae~t~~~v~ell~p~k~~Ll~~ 923 (2426)
+..++..+....... .........++..++.- +.+++..+|+.|..++..+.+..+. ...+++ .++..
T Consensus 79 l~~~~~~~~~~~~~~------~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~-~~~~~e----~l~~~ 147 (278)
T 4ffb_C 79 LNSLIDAFASSSLKN------AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS-ITQSVE----LVIPF 147 (278)
T ss_dssp HHHHHTTCC---CCH------HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS-SHHHHH----HHGGG
T ss_pred HHHHHHHhhhhhccc------chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc-HHHHHH----HHHHH
Confidence 666654432221111 11112234455566655 7899999999999999888876542 222221 12211
Q ss_pred CCCCccccccCchhhhHhhhhhhhhhccc
Q psy5930 924 IPPKKLLIRNHSANAQIGLMEGNTFCQSL 952 (2426)
Q Consensus 924 I~~Kpl~lRalpf~~QIG~idaitfcl~L 952 (2426)
. .+..-..+.+.+..++-|+.-
T Consensus 148 l-------~~Knpkv~~~~l~~l~~~l~~ 169 (278)
T 4ffb_C 148 F-------EKKLPKLIAAAANCVYELMAA 169 (278)
T ss_dssp G-------GCSCHHHHHHHHHHHHHHHHH
T ss_pred H-------hccCHHHHHHHHHHHHHHHHH
Confidence 1 222335788888888877753
No 49
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=74.13 E-value=1.6e+02 Score=41.77 Aligned_cols=382 Identities=14% Similarity=0.147 Sum_probs=197.1
Q ss_pred CchhhhhHhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhh
Q psy5930 786 ERAWYAKLGGCYAIKFFYNTMAIKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAETL 865 (2426)
Q Consensus 786 ~~~w~~K~gG~~gi~~l~~~~~~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~ 865 (2426)
+.+|..--+.|.+|+.+.+.+....=..+..++++.|+-. .+.+.+-...+ -.|..++. ++-+...= .
T Consensus 490 ~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L-~e~~~~kd~k~-~vas~i~~-vlgrY~~w---------l 557 (1073)
T 3gjx_A 490 EWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGL-CEQKRGKDNKA-IIASNIMY-IVGQYPRF---------L 557 (1073)
T ss_dssp CCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHH-HHHSCSHHHHH-HHHHHHHH-HHHHCHHH---------H
T ss_pred CCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcc-cccccccchhH-HHHHHHHH-HHhhhHHH---------H
Confidence 4579999999999999998887666667777888877632 22222111111 12232222 33222100 0
Q ss_pred hhhhhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhCCchhhc----cccchhhhhccCCCCccccccCchhhhHh
Q psy5930 866 TVQSKALSEVTNELTRNITLPNDLLREQSMYLLQVFAETQGKSVVQV----MEPHKDVLADIIPPKKLLIRNHSANAQIG 941 (2426)
Q Consensus 866 ~~~~~~~~~~~~~lv~eL~s~n~~VR~~aq~~L~~lae~t~~~v~el----l~p~k~~Ll~~I~~Kpl~lRalpf~~QIG 941 (2426)
....+.+..++.-++.-+..+|+.|.++|-.++..+++-++...... ..|+-+.+++-+..- .-.++...+.+
T Consensus 558 ~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~---~~~l~~~~~~~ 634 (1073)
T 3gjx_A 558 RAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTI---ICDLQPQQVHT 634 (1073)
T ss_dssp HHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHH---HTTCCHHHHHH
T ss_pred HhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHH---HHhcCHHHHHH
Confidence 11234688888888888889999999999999999999887654332 345555444321110 12357779999
Q ss_pred hhhhhhhhcccCCCccccCcchhhHHHHHHHHHH-hhcc--CchhhhcCCCCCCccccchHHHHHHHHHHhhhcCCchhh
Q psy5930 942 LMEGNTFCQSLTPRLFTTDMSIHEHSSFFQEITN-ICES--SDQALMKLPCYKPISSLVPLRKAAMRALASWHYVPNCSQ 1018 (2426)
Q Consensus 942 ~idaitfcl~L~p~~l~~~~~~~el~rll~E~l~-Lada--dD~~l~k~~~~k~~~~lv~LRv~ci~lL~~~~~~~~~~~ 1018 (2426)
..||+.+..+-.|+-..-..-++.+.....+.+. +.+. .+..+.+.+. +...+.++-. |....+.+++. .|..
T Consensus 635 lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~--~i~~l~~il~-~n~~v~~~~g~-~f~~ 710 (1073)
T 3gjx_A 635 FYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPE--TVKQLGSILK-TNVRACKAVGH-PFVI 710 (1073)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHH--HHHHHHHHHH-HHHHHHHHHCG-GGHH
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChH--HHHHHHHHHh-hhHHHHhhcch-hHHH
Confidence 9999999999877643322112222222223322 2221 1111111110 1122333222 44444444443 2322
Q ss_pred ---HHHHHHHHhhcCCCHHHHHH--HHHHHHHHHccCCCChhhHHHhhHHHHhhhcCCCCCCHhHHHHHHHhhhhCCCcc
Q psy5930 1019 ---KIFNTLFAALERPNPELQEA--AFQAMKTFVNGSPIDLKSVYEVMKPLLLTLGDYRNLNLVTARKLSYIVQPFPSSF 1093 (2426)
Q Consensus 1019 ---rIi~vfFKsL~s~s~ei~~a--A~~gLk~vL~~~~~~~e~L~q~LRPiL~nLsD~k~Ltv~gLegLarLLeLL~nyF 1093 (2426)
+|+.-++ .+|+.-.+.+.. |..|-. ..+-.+-.+||=|= .-.|+|+..|.
T Consensus 711 ~~~~i~~~~l-~~y~~~s~~i~~~v~~~g~~-------~~~~~~~~~~r~ik-----------------~eil~l~~~~i 765 (1073)
T 3gjx_A 711 QLGRIYLDML-NVYKCLSENISAAIQANGEM-------VTKQPLIRSMRTVK-----------------RETLKLISGWV 765 (1073)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHCGG-------GGSSHHHHHHHHHH-----------------HHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHhCCch-------hhccHHHHHHHHHH-----------------HHHHHHHHHHH
Confidence 3322211 222222222211 111100 00000001111100 00111222221
Q ss_pred c-----HHHHHHHHHHHHHhhhhhhhh-h--cCCCCCCcchhHHHHHHHhh-ccCchhHHhhHHHHHHHHHHHHHhcCCC
Q psy5930 1094 S-----EKLCEQLLVNLKNLFENIVAQ-K--ENPPKNSETEKIIVVIIGIF-KESPAAKAQFIEPLISLILENEHALSIG 1164 (2426)
Q Consensus 1094 k-----veiG~KLLdHLk~~~e~~~~~-~--~~~~~~~~~~kii~aIinIF-HLLP~aa~~Fle~Lv~~Vl~lE~~L~~~ 1164 (2426)
. .++++.++.-| .+..+.+ + ...-++.+-...+++|++=. +.+++.=...++.+..+++.+=.+ ..+
T Consensus 766 ~~~~~~~~v~~~~i~pl---~~~vl~dY~~~~p~~r~~evL~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~mi~~-~f~ 841 (1073)
T 3gjx_A 766 SRSNDPQMVAENFVPPL---LDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINK-DFE 841 (1073)
T ss_dssp TTCSCHHHHHHHTSHHH---HHHTHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHSS-CSS
T ss_pred hcCCCHHHHHHHhHHHH---HHHHHHHHhcCCcccccHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhC-Ccc
Confidence 1 23333333222 1111111 1 11234566677888887766 667776677888888888877554 344
Q ss_pred CCCCCcchHHHHHhhCcHHHHHHhhcccCCCchhHHHHH---HHHhhCCCCHHHHHHHHHh
Q psy5930 1165 PYSPYREPLVKYLLRYPTETLQSMLSEIHMKDPLWRNFF---VYLIKHQEGKCFRDALQTQ 1222 (2426)
Q Consensus 1165 ~~SPfR~PL~kfLnRyp~e~~~~Fl~~~~l~~~~~~~~f---~~il~~~~a~~Lr~~l~~~ 1222 (2426)
..-=+|..+.|+|.++-..+...|+ ++...++..++ .+.++|++ |++-.+.
T Consensus 842 ~~Pe~r~~ff~ll~~~~~~~f~~l~---~l~~~~~~~~i~~i~wa~kh~~----r~i~~~~ 895 (1073)
T 3gjx_A 842 EYPEHRTNFFLLLQAVNSHCFPAFL---AIPPAQFKLVLDSIIWAFKHTM----RNVADTG 895 (1073)
T ss_dssp SCHHHHHHHHHHHHHHHHHCGGGTT---TSCHHHHHHHHHHHHHHHTCSS----HHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHhHHHH---cCCHHHHHHHHHHHHHHcCCCC----hhHHHHH
Confidence 4444699999999998888888788 35566666666 56667877 5555544
No 50
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=73.70 E-value=59 Score=41.51 Aligned_cols=153 Identities=12% Similarity=0.082 Sum_probs=91.9
Q ss_pred HHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHhhCCchhhc-chhhHHHHHHHHHHhccCchhhhhHhHHHHHHHHHHh
Q psy5930 727 LIDAIAVILGHEDKELCKPGYIALKCIMETATCITGSIENAC-NLPLMEYLAERMCNLCYERAWYAKLGGCYAIKFFYNT 805 (2426)
Q Consensus 727 l~DAi~~~l~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~-~~p~~~~L~~rf~~~Cy~~~w~~K~gG~~gi~~l~~~ 805 (2426)
.+..++..|.++++.++..|..++..+...... ..... .-..+..|.+.+.+ ++.|..+..++.++.-|...
T Consensus 18 ~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~----~~~~~~~~~~i~~Lv~~L~~---~~~~~~~~~a~~~L~~ls~~ 90 (529)
T 1jdh_A 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEAS----RHAIMRSPQMVSAIVRTMQN---TNDVETARCTAGTLHNLSHH 90 (529)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHH----HHHHHTCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCcc----HHHHHhCcchHHHHHHHHhc---CCCHHHHHHHHHHHHHHHcC
Confidence 688999999999999999998888766432110 00001 11233444444432 34678888888888777544
Q ss_pred c-hHHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhhhhhhhhHHHHHHHHhhhcC
Q psy5930 806 M-AIKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAETLTVQSKALSEVTNELTRNIT 884 (2426)
Q Consensus 806 ~-~~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~eL~ 884 (2426)
- +...+.+ ...+..|+..+++-. ..+...|-.+|..+... . +. ... .. .-...+..|+.-+.
T Consensus 91 ~~~~~~i~~--~g~i~~L~~lL~~~~----~~v~~~a~~~L~~l~~~---~--~~-~~~--~i---~~~g~i~~L~~ll~ 153 (529)
T 1jdh_A 91 REGLLAIFK--SGGIPALVKMLGSPV----DSVLFYAITTLHNLLLH---Q--EG-AKM--AV---RLAGGLQKMVALLN 153 (529)
T ss_dssp HHHHHHHHH--TTHHHHHHHHTTCSC----HHHHHHHHHHHHHHHHH---C--TT-HHH--HH---HHHTHHHHHHHGGG
T ss_pred chhHHHHHH--cCCHHHHHHHHcCCC----HHHHHHHHHHHHHHhcC---C--cc-hHH--HH---HHcCCHHHHHHHHh
Confidence 3 2333333 368888888888732 33445555555444322 1 00 000 00 01235667777788
Q ss_pred CCChHHHHHHHHHHHHHHH
Q psy5930 885 LPNDLLREQSMYLLQVFAE 903 (2426)
Q Consensus 885 s~n~~VR~~aq~~L~~lae 903 (2426)
+++..||..+-.+|..++.
T Consensus 154 ~~~~~~~~~~~~~L~~la~ 172 (529)
T 1jdh_A 154 KTNVKFLAITTDCLQILAY 172 (529)
T ss_dssp CCCHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHh
Confidence 8999999999889988875
No 51
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=73.68 E-value=1e+02 Score=43.15 Aligned_cols=375 Identities=9% Similarity=0.039 Sum_probs=183.6
Q ss_pred HHHHHHhhcCC---ChhhhhHHHHHHHHHHHHHHHhhCCchhhcchhhHHHHHHHHHHhccCchhhhhHhHHHHHHHHHH
Q psy5930 728 IDAIAVILGHE---DKELCKPGYIALKCIMETATCITGSIENACNLPLMEYLAERMCNLCYERAWYAKLGGCYAIKFFYN 804 (2426)
Q Consensus 728 ~DAi~~~l~~~---~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~p~~~~L~~rf~~~Cy~~~w~~K~gG~~gi~~l~~ 804 (2426)
..-++-.|.+. ++-+|.++..++..+.+. + .+ ..+..+++-++++--++.-..+..+|.++..+++
T Consensus 457 ~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~----~-~~------~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 457 TKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQ----L-TK------AQLIELMPILATFLQTDEYVVYTYAAITIEKILT 525 (960)
T ss_dssp HHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGG----S-CH------HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHhHHHhcCCCCCCceehHHHHHHHHHHHhh----C-CH------HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 44455566666 778888888888877652 1 11 2345555556655556777789999999999987
Q ss_pred hc----------hHHHHHHHHHHHHHHHHHHhcCCCcccchh--HHHHHHHHHHHHHHHHcCCCCCCCchhhhhhhhhhH
Q psy5930 805 TM----------AIKWVYSHMFVFVKALLFVMMDLTGEVSSG--AIDEARRNLKQLIVLCATPIKEPVDAETLTVQSKAL 872 (2426)
Q Consensus 805 ~~----------~~~wl~~~~~~ivraLlfvlkD~p~e~~~~--~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~ 872 (2426)
.. +..-+..+...++..|+.++....+ .|.. ..+.+-+++..++........+. . ..-+
T Consensus 526 ~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~-~~~~~~~~e~l~~al~~vv~~~~~~~~p~----~----~~l~ 596 (960)
T 1wa5_C 526 IRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGS-SPEKLAENEFLMRSIFRVLQTSEDSIQPL----F----PQLL 596 (960)
T ss_dssp CBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCC-CHHHHTSCHHHHHHHHHHHHHHTTTTGGG----H----HHHH
T ss_pred cccccccccccccHHHhhhhHHHHHHHHHHHHHhccC-CCCcccccHHHHHHHHHHHHHHHHhhhhH----H----HHHH
Confidence 42 3455677888899999998876521 1111 12455666666666554322211 0 1112
Q ss_pred HHHHHHHhhhcCC-CChHHHHHHHHHHHHHHHHhCCchhhccccchhhhhccCC---CCccccccCchhhhHhhhhhhhh
Q psy5930 873 SEVTNELTRNITL-PNDLLREQSMYLLQVFAETQGKSVVQVMEPHKDVLADIIP---PKKLLIRNHSANAQIGLMEGNTF 948 (2426)
Q Consensus 873 ~~~~~~lv~eL~s-~n~~VR~~aq~~L~~lae~t~~~v~ell~p~k~~Ll~~I~---~Kpl~lRalpf~~QIG~idaitf 948 (2426)
..++..+..-..+ .++..+..+-.|+..++...+.+ ...++-+.+..++. .+.. -.-.|- ..+.+..
T Consensus 597 ~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~---~~~~~~~~~~p~~~~iL~~~~-~~~~~~-----~~~i~~~ 667 (960)
T 1wa5_C 597 AQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQ---NLPLLVDSMMPTFLTVFSEDI-QEFIPY-----VFQIIAF 667 (960)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGG---GHHHHHHHHHHHHHHHHHTTC-TTTHHH-----HHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcc---hHHHHHHHHHHHHHHHHHhhh-HhhHHH-----HHHHHHH
Confidence 2222222222223 36678878888888888864432 22233333321110 0000 000000 1111111
Q ss_pred hcccCCCccccCcchhhHHHHHHHHHHhhccCchhhhcCCCCCCccccchHHHHHHHHHHhhh--cCCchh--hHHHHHH
Q psy5930 949 CQSLTPRLFTTDMSIHEHSSFFQEITNICESSDQALMKLPCYKPISSLVPLRKAAMRALASWH--YVPNCS--QKIFNTL 1024 (2426)
Q Consensus 949 cl~L~p~~l~~~~~~~el~rll~E~l~LadadD~~l~k~~~~k~~~~lv~LRv~ci~lL~~~~--~~~~~~--~rIi~vf 1024 (2426)
|+...++ |. +.+..++.-++ ++ ..++... .-..++++|.... ..+++. +.++++|
T Consensus 668 l~~~~~~---~~---~~~~~~~~~l~------~~-----~~~~~~~----~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~ 726 (960)
T 1wa5_C 668 VVEQSAT---IP---ESIKPLAQPLL------AP-----NVWELKG----NIPAVTRLLKSFIKTDSSIFPDLVPVLGIF 726 (960)
T ss_dssp HHHHCSS---CC---TTTGGGHHHHT------SG-----GGGCCTT----THHHHHHHHHHHHHHHGGGCSCSHHHHHHH
T ss_pred HHHhccC---CC---HHHHHHHHHHc------CH-----HHhcCCC----CchhHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 1111111 11 11111111111 00 0111111 1123444443322 122333 5688888
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHccCCCChhhHHHh----hHHHHhhhcCCCC--CCHhHHHHHHHhhhhCCCcccHHHH
Q psy5930 1025 FAALERPNPELQEAAFQAMKTFVNGSPIDLKSVYEV----MKPLLLTLGDYRN--LNLVTARKLSYIVQPFPSSFSEKLC 1098 (2426)
Q Consensus 1025 FKsL~s~s~ei~~aA~~gLk~vL~~~~~~~e~L~q~----LRPiL~nLsD~k~--Ltv~gLegLarLLeLL~nyFkveiG 1098 (2426)
-+.+.+++.+ +.|+..|..++..-+ .+.+.+- +.-++..|+..+. +....+..++.+. -+++.+.-
T Consensus 727 ~~~~~~~~~~--~~a~~ll~~i~~~~~--~~~~~~yl~~i~~~l~~~l~~~~~~~~~~~~l~~~~~~~----~~~~~~~~ 798 (960)
T 1wa5_C 727 QRLIASKAYE--VHGFDLLEHIMLLID--MNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLIS----NKLGSDFL 798 (960)
T ss_dssp HHHHTCTTTH--HHHHHHHHHHHHHSC--HHHHGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHH----HHHCHHHH
T ss_pred HHHhCCCccc--chHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHH----HHcCHHHH
Confidence 8888888765 778888887776532 2223332 3334445544321 1113333444433 35555432
Q ss_pred HHHHHH----------HHHhhhhhhhhhcCCCCCCcchhHH-HHHHHhhccC---chhHHhhHHHHHHHHHHHHHhcCCC
Q psy5930 1099 EQLLVN----------LKNLFENIVAQKENPPKNSETEKII-VVIIGIFKES---PAAKAQFIEPLISLILENEHALSIG 1164 (2426)
Q Consensus 1099 ~KLLdH----------Lk~~~e~~~~~~~~~~~~~~~~kii-~aIinIFHLL---P~aa~~Fle~Lv~~Vl~lE~~L~~~ 1164 (2426)
-..+|. ++.|+.. ...+....+-|++ .++.++...- |++.......++..++.+=..+...
T Consensus 799 ~~~l~~i~~~~f~~~~~~~w~~~-----~~~~~~~~erk~~~~gl~~ll~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~ 873 (960)
T 1wa5_C 799 IHFIDEVQDGLFQQIWGNFIITT-----LPTIGNLLDRKIALIGVLNMVINGQFFQSKYPTLISSTMNSIIETASSQSIA 873 (960)
T ss_dssp HHHHHTTSTTHHHHHHHHTHHHH-----GGGCCSHHHHHHHHHHHHHHHHSCHHHHHHCGGGHHHHHHHHHHHHHSCSTT
T ss_pred HHHHHhcchhHHHHHHHHHhccc-----hhhccCHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHhCCccc
Confidence 222221 1245442 1122223334443 3466666655 7666778899999999887766654
Q ss_pred C
Q psy5930 1165 P 1165 (2426)
Q Consensus 1165 ~ 1165 (2426)
.
T Consensus 874 ~ 874 (960)
T 1wa5_C 874 N 874 (960)
T ss_dssp C
T ss_pred c
Confidence 3
No 52
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=70.92 E-value=91 Score=34.40 Aligned_cols=109 Identities=13% Similarity=0.078 Sum_probs=68.1
Q ss_pred HHHHHhccCchhhhhHhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCC
Q psy5930 778 ERMCNLCYERAWYAKLGGCYAIKFFYNTMAIKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIK 857 (2426)
Q Consensus 778 ~rf~~~Cy~~~w~~K~gG~~gi~~l~~~~~~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~ 857 (2426)
..+..+-+.+.+..+..+|.+|..+...-+...-.-.+...+..|+..|++- ...+...|-.+|-.+ +...
T Consensus 15 ~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~----~~~v~~~a~~~L~~l---~~~~-- 85 (210)
T 4db6_A 15 PQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP----NEQILQEALWALSNI---ASGG-- 85 (210)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS----CHHHHHHHHHHHHHH---TTSC--
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC----CHHHHHHHHHHHHHH---hcCC--
Confidence 4566666788899999999999998854433222222346888899888874 233444444444332 2111
Q ss_pred CCCchhhhhhhhhhH--HHHHHHHhhhcCCCChHHHHHHHHHHHHHHH
Q psy5930 858 EPVDAETLTVQSKAL--SEVTNELTRNITLPNDLLREQSMYLLQVFAE 903 (2426)
Q Consensus 858 ~~~~~~~~~~~~~~~--~~~~~~lv~eL~s~n~~VR~~aq~~L~~lae 903 (2426)
+ + ....+ ...+..|+.-|.+++..||+.|-.+|..++.
T Consensus 86 -~---~----~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 125 (210)
T 4db6_A 86 -N---E----QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 125 (210)
T ss_dssp -H---H----HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred -c---H----HHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHc
Confidence 0 0 00111 1245667778889999999999888888774
No 53
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=70.89 E-value=86 Score=37.79 Aligned_cols=99 Identities=13% Similarity=0.143 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhhh-cCCc----hh-hHHHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCChhhHHH-h-hHHHHhhhcC
Q psy5930 999 LRKAAMRALASWH-YVPN----CS-QKIFNTLFAALERPNPELQEAAFQAMKTFVNGSPIDLKSVYE-V-MKPLLLTLGD 1070 (2426)
Q Consensus 999 LRv~ci~lL~~~~-~~~~----~~-~rIi~vfFKsL~s~s~ei~~aA~~gLk~vL~~~~~~~e~L~q-~-LRPiL~nLsD 1070 (2426)
.|..|+.+|+... ..++ |. ...+.++-+.|.+.+++++..|-.+|.....++.-..+.+.+ + ++|+..-|.+
T Consensus 141 v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~ 220 (296)
T 1xqr_A 141 VRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRT 220 (296)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcC
Confidence 5666666666443 2332 21 256778888899999999999999999998875444445544 4 7777666664
Q ss_pred -CCCCCHhHHHHHHHhhhhCCCcccHHHHH
Q psy5930 1071 -YRNLNLVTARKLSYIVQPFPSSFSEKLCE 1099 (2426)
Q Consensus 1071 -~k~Ltv~gLegLarLLeLL~nyFkveiG~ 1099 (2426)
.-++-.+.+.+|+.|++. .-+.++.+.
T Consensus 221 ~d~~v~~~al~aL~~l~~~--~~~~~~~~~ 248 (296)
T 1xqr_A 221 EHSPFHEHVLGALCSLVTD--FPQGVRECR 248 (296)
T ss_dssp CCSTHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHhC--ChhHHHHHh
Confidence 245667888899888887 334445443
No 54
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=70.29 E-value=17 Score=41.79 Aligned_cols=152 Identities=12% Similarity=0.074 Sum_probs=97.8
Q ss_pred HHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHhhCCchhhcchhhH-HHHHHHHHHhccCchhhhhHhHHHHHHHHHHh
Q psy5930 727 LIDAIAVILGHEDKELCKPGYIALKCIMETATCITGSIENACNLPLM-EYLAERMCNLCYERAWYAKLGGCYAIKFFYNT 805 (2426)
Q Consensus 727 l~DAi~~~l~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~p~~-~~L~~rf~~~Cy~~~w~~K~gG~~gi~~l~~~ 805 (2426)
.+++++..|.+++.++++.+..++..+.. +.... ...+. ....+.++.+..++.+..+..++.++..|...
T Consensus 97 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~------~~~~~--~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 168 (252)
T 4db8_A 97 ALPALVQLLSSPNEQILQEALWALSNIAS------GGNEQ--IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (252)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTT------SCHHH--HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHhhc------CCchH--HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 68899999999999999999888877632 11111 01122 23667788888888999999999999888865
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhhhhhhhhH-HHHHHHHhhhcC
Q psy5930 806 MAIKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAETLTVQSKAL-SEVTNELTRNIT 884 (2426)
Q Consensus 806 ~~~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~lv~eL~ 884 (2426)
-+...-.-....++..|+..+++- ...+...|-.+|..+. ... + +. ...-. ...+..|+.-+.
T Consensus 169 ~~~~~~~~~~~~~i~~L~~ll~~~----~~~v~~~a~~~L~~l~---~~~---~---~~---~~~~~~~g~i~~L~~ll~ 232 (252)
T 4db8_A 169 GNEQIQAVIDAGALPALVQLLSSP----NEQILQEALWALSNIA---SGG---N---EQ---KQAVKEAGALEKLEQLQS 232 (252)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCS----SHHHHHHHHHHHHHHT---TSC---H---HH---HHHHHHTTHHHHHHTTTT
T ss_pred ChHHHHHHHHCCCHHHHHHHHCCC----CHHHHHHHHHHHHHHh---cCC---H---HH---HHHHHHCCcHHHHHHHhC
Confidence 433221222356788888888864 2334444444444433 111 0 10 00001 125667788888
Q ss_pred CCChHHHHHHHHHHHHHH
Q psy5930 885 LPNDLLREQSMYLLQVFA 902 (2426)
Q Consensus 885 s~n~~VR~~aq~~L~~la 902 (2426)
+.++.||+.|..+|..++
T Consensus 233 ~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 233 HENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp CSSSHHHHTHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 999999999999987765
No 55
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=69.65 E-value=76 Score=42.19 Aligned_cols=153 Identities=12% Similarity=0.097 Sum_probs=89.7
Q ss_pred HHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHhhCCchhhcc-hhhHHHHHHHHHHhccCchhhhhHhHHHHHHHHHHh
Q psy5930 727 LIDAIAVILGHEDKELCKPGYIALKCIMETATCITGSIENACN-LPLMEYLAERMCNLCYERAWYAKLGGCYAIKFFYNT 805 (2426)
Q Consensus 727 l~DAi~~~l~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~-~p~~~~L~~rf~~~Cy~~~w~~K~gG~~gi~~l~~~ 805 (2426)
.+..++..|.++++.++..|..+|..+.+... ....... -..+..|++.+.+ ++....+..++..+..|...
T Consensus 15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~----~~~~i~~~~~~i~~Lv~~L~~---~~~~~~~~~A~~~L~~Ls~~ 87 (644)
T 2z6h_A 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA----SRHAIMRSPQMVSAIVRTMQN---TNDVETARCTAGTLHNLSHH 87 (644)
T ss_dssp THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTT----HHHHHTTCHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCh----hHHHHHhccChHHHHHHHHhc---CCCHHHHHHHHHHHHHHhcC
Confidence 57888999999999999999888887754211 0000111 1233444444432 23455666666666655543
Q ss_pred c-hHHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhhhhhhhhHHHHHHHHhhhcC
Q psy5930 806 M-AIKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAETLTVQSKALSEVTNELTRNIT 884 (2426)
Q Consensus 806 ~-~~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~eL~ 884 (2426)
- +...+.+ ...+..|+..+++-. ..+...|-.+|..+.... +.. ..... -...+..|+.-|.
T Consensus 88 ~~~~~~i~~--~g~i~~Lv~lL~~~~----~~v~~~A~~aL~nL~~~~-----~~~---~~~v~---~~g~i~~Lv~lL~ 150 (644)
T 2z6h_A 88 REGLLAIFK--SGGIPALVKMLGSPV----DSVLFYAITTLHNLLLHQ-----EGA---KMAVR---LAGGLQKMVALLN 150 (644)
T ss_dssp HHHHHHHHT--TTHHHHHHHHTTCSS----HHHHHHHHHHHHHHHHHS-----TTH---HHHHH---HTTHHHHHHHGGG
T ss_pred hhhHHHHHH--cCCHHHHHHHHhCCC----HHHHHHHHHHHHHHHhCc-----chh---HHHHH---HCCChHHHHHHHC
Confidence 2 2333333 367888888887632 344555555555554321 110 00000 1235667778888
Q ss_pred CCChHHHHHHHHHHHHHHH
Q psy5930 885 LPNDLLREQSMYLLQVFAE 903 (2426)
Q Consensus 885 s~n~~VR~~aq~~L~~lae 903 (2426)
+++..+|..+-.+|..++.
T Consensus 151 ~~~~~~~~~a~~~L~~La~ 169 (644)
T 2z6h_A 151 KTNVKFLAITTDCLQILAY 169 (644)
T ss_dssp CCCHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHh
Confidence 8899999988889988884
No 56
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=66.99 E-value=7.3 Score=50.27 Aligned_cols=139 Identities=10% Similarity=0.112 Sum_probs=79.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhCCchhhcchhhHHHHHHHHHHhccCchhhhhHhHHHHHHHHHHhchHHHHHHHHHHHH
Q psy5930 740 KELCKPGYIALKCIMETATCITGSIENACNLPLMEYLAERMCNLCYERAWYAKLGGCYAIKFFYNTMAIKWVYSHMFVFV 819 (2426)
Q Consensus 740 ~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~p~~~~L~~rf~~~Cy~~~w~~K~gG~~gi~~l~~~~~~~wl~~~~~~iv 819 (2426)
..+|+.+..++..+ . .+.+. .. ++.++...+..+.|..+-||.+||+++.+-+.. ...++
T Consensus 242 APVRETaAQtLGaL-~----hLp~e-----~~----IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~------Ld~Vv 301 (800)
T 3oc3_A 242 APVRDAAAYLLSRI-Y----PLIGP-----ND----IIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED------KDGLC 301 (800)
T ss_dssp CHHHHHHHHHHHHH-T----TTSCS-----CC----HHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC------HHHHH
T ss_pred eehHHHHHHHHHHH-H----hCChh-----HH----HHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH------HHHHH
Confidence 34777777777654 1 22222 33 344444577888999999999999999332231 56778
Q ss_pred HHHHHHhcCCCcccchhHHHHHH-----HHHHHHHHHHcCCCCCCCchhhhhhhhhhHHHHHH-----------------
Q psy5930 820 KALLFVMMDLTGEVSSGAIDEAR-----RNLKQLIVLCATPIKEPVDAETLTVQSKALSEVTN----------------- 877 (2426)
Q Consensus 820 raLlfvlkD~p~e~~~~~~~~a~-----~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 877 (2426)
++++..|.|--.||-+.+.+.-. +.+..++..|+.-..+.. + .+.+-.++-+++.
T Consensus 302 ~aVL~GL~D~DDDVRAVAAetLiPIA~p~~l~~LL~iLWd~L~~LD--D-LSASTgSVMdLLAkL~s~p~~a~~dp~LVP 378 (800)
T 3oc3_A 302 RKLVSLLSSPDEDIKLLSAELLCHFPITDSLDLVLEKCWKNIESEE--L-ISVSKTSNLSLLTKIYRENPELSIPPERLK 378 (800)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHTTSCCSSTHHHHHHHHHHHHHTCC--S-CCTTHHHHHHHHHHHHHHCTTCCCCSGGGG
T ss_pred HHHHhhcCCcccHHHHHHHHHhhhhcchhhHHHHHHHHHHHhhhhc--c-cchhhHHHHHHHHHHHcCCcccccChHHHH
Confidence 89999999887776554432110 123344444443211110 0 0111112222222
Q ss_pred HHhhhcCCCChHHHHHHHHHHHHH
Q psy5930 878 ELTRNITLPNDLLREQSMYLLQVF 901 (2426)
Q Consensus 878 ~lv~eL~s~n~~VR~~aq~~L~~l 901 (2426)
.|..-+.|+-+.||.++-++|..+
T Consensus 379 RL~PFLRHtITSVR~AVL~TL~tf 402 (800)
T 3oc3_A 379 DIFPCFTSPVPEVRTSILNMVKNL 402 (800)
T ss_dssp GTGGGGTCSSHHHHHHHHHHTTTC
T ss_pred HHHhhhcCCcHHHHHHHHHHHHHH
Confidence 266677888889999888777443
No 57
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=61.23 E-value=2.1e+02 Score=34.89 Aligned_cols=64 Identities=17% Similarity=0.244 Sum_probs=48.8
Q ss_pred hcchhHHHhHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccccCCCCh---HHHHHHHHHhhcCCChhhhhHHHHHHHHH
Q psy5930 677 YLIKELRKDSLLYTVLVVRHYTLVAITQQTGPFPLYGKSALLEGTMDP---LVLIDAIAVILGHEDKELCKPGYIALKCI 753 (2426)
Q Consensus 677 ~~~~~l~~~a~~f~~~v~rhf~l~~i~~~~~~~~~~~~~~~~~~~ld~---~vl~DAi~~~l~~~~~~~~~~~~~~l~~~ 753 (2426)
..-||.|..-..++..++.|..-.-.. +.| ..++|+|+.+..|+++++.+.|..++..+
T Consensus 133 ~eyPehR~~Ff~LL~ai~~~cF~al~~------------------lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~l 194 (321)
T 1w9c_A 133 EEYPEHRTNFFLLLQAVNSHCFPAFLA------------------IPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTL 194 (321)
T ss_dssp TCSHHHHHHHHHHHHHHHHHCTTHHHH------------------SCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHHHHhHHHHHc------------------CCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHH
Confidence 466889998888899988883321111 122 34999999999999999999999999888
Q ss_pred HHHHH
Q psy5930 754 METAT 758 (2426)
Q Consensus 754 ~~~~~ 758 (2426)
++-..
T Consensus 195 l~n~~ 199 (321)
T 1w9c_A 195 LQNVA 199 (321)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77553
No 58
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=61.03 E-value=38 Score=40.37 Aligned_cols=118 Identities=8% Similarity=0.096 Sum_probs=84.9
Q ss_pred HHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHhhCCchhhcchhhHHHHHHHHHHhccCchhhhhHhHHHHHHHHHH
Q psy5930 725 LVLIDAIAVILGHEDKELCKPGYIALKCIMETATCITGSIENACNLPLMEYLAERMCNLCYERAWYAKLGGCYAIKFFYN 804 (2426)
Q Consensus 725 ~vl~DAi~~~l~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~p~~~~L~~rf~~~Cy~~~w~~K~gG~~gi~~l~~ 804 (2426)
..++=++++-+|+....+|+.+..++..+.+.+ + ...+++.++.+.-...|..|.|.+.-|..+++
T Consensus 131 ~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~-----~---------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~ 196 (266)
T 2of3_A 131 SAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVV-----G---------PLKMTPMLLDALKSKNARQRSECLLVIEYYIT 196 (266)
T ss_dssp HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH-----C---------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHC-----C---------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 458899999999999999999999988876532 1 13355666666666789999999988888887
Q ss_pred hchHHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhhhhhhhhHHHHHHHHhhhcC
Q psy5930 805 TMAIKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAETLTVQSKALSEVTNELTRNIT 884 (2426)
Q Consensus 805 ~~~~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~eL~ 884 (2426)
..|.. |. +.+ .+-..+..-+.
T Consensus 197 ~~G~~------------------------~~----------------------------------~~l-~~~~~ia~ll~ 217 (266)
T 2of3_A 197 NAGIS------------------------PL----------------------------------KSL-SVEKTVAPFVG 217 (266)
T ss_dssp HHCSG------------------------GG----------------------------------GGG-CHHHHHGGGGG
T ss_pred hcCCC------------------------cc----------------------------------ccc-cchHHHHHHHc
Confidence 65432 00 000 00033445567
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCchhhcccc
Q psy5930 885 LPNDLLREQSMYLLQVFAETQGKSVVQVMEP 915 (2426)
Q Consensus 885 s~n~~VR~~aq~~L~~lae~t~~~v~ell~p 915 (2426)
++|..||++|..|+..+=...|-.|...+..
T Consensus 218 D~d~~VR~aAl~~lve~y~~~Gd~v~k~lg~ 248 (266)
T 2of3_A 218 DKDVNVRNAAINVLVACFKFEGDQMWKAAGR 248 (266)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHTTHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHHHHHhhHHHHHHHhc
Confidence 7899999999999988888888888877643
No 59
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=57.52 E-value=81 Score=36.94 Aligned_cols=146 Identities=14% Similarity=0.155 Sum_probs=105.1
Q ss_pred HHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHhhCCchhhcchhhHHHHHHHHHHhccCchhhhhHhHHHHHHHHHHhc
Q psy5930 727 LIDAIAVILGHEDKELCKPGYIALKCIMETATCITGSIENACNLPLMEYLAERMCNLCYERAWYAKLGGCYAIKFFYNTM 806 (2426)
Q Consensus 727 l~DAi~~~l~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~p~~~~L~~rf~~~Cy~~~w~~K~gG~~gi~~l~~~~ 806 (2426)
-+..+.+-|.+.++.+...+..+++.+.+.+-. ..+...++.++.+++..--++.=....-+.-.|+++++..
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~-------~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~v 106 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADS-------DLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDV 106 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCH-------HHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccc-------cccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCC
Confidence 677888999999999999999999999886311 2356788999999999998887788888888999999988
Q ss_pred hH---HHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhhhhhhhhHHHHHHHHhhhc
Q psy5930 807 AI---KWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAETLTVQSKALSEVTNELTRNI 883 (2426)
Q Consensus 807 ~~---~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~eL 883 (2426)
|. .+ .-+.+||.-++ .+-.......|-+.+..+ .+... .+.+ +..+++=+
T Consensus 107 pL~~~~y-----~Kl~~aL~dli----k~~~~il~~eaae~Lgkl------kv~~~---------~~~V---~~~l~sLl 159 (265)
T 3b2a_A 107 PMGSKTF-----LKAAKTLVSLL----ESPDDMMRIETIDVLSKL------QPLED---------SKLV---RTYINELV 159 (265)
T ss_dssp CBCHHHH-----HHHHHHHHHHT----TSCCHHHHHHHHHHHHHC------CBSCC---------CHHH---HHHHHHHH
T ss_pred CCCHHHH-----HHHHHHHHHHh----cCCCchHHHHHHHHhCcC------Ccccc---------hHHH---HHHHHHHH
Confidence 54 33 23444544444 444444555677777555 11111 1223 44445555
Q ss_pred CCCChHHHHHHHHHHHHHHHHhC
Q psy5930 884 TLPNDLLREQSMYLLQVFAETQG 906 (2426)
Q Consensus 884 ~s~n~~VR~~aq~~L~~lae~t~ 906 (2426)
.|.|..|..++-++|.-+|..++
T Consensus 160 ~Skd~~vK~agl~~L~eia~~S~ 182 (265)
T 3b2a_A 160 VSPDLYTKVAGFCLFLNMLNSSA 182 (265)
T ss_dssp TCSSHHHHHHHHHHHHHHGGGCS
T ss_pred hCCChhHHHHHHHHHHHhhcccC
Confidence 89999999999999999998876
No 60
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=56.97 E-value=1.2e+02 Score=41.21 Aligned_cols=228 Identities=11% Similarity=0.067 Sum_probs=117.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhhhhhhhhHHHHHHHHhhhcCCC
Q psy5930 807 AIKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAETLTVQSKALSEVTNELTRNITLP 886 (2426)
Q Consensus 807 ~~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~eL~s~ 886 (2426)
.+.|+.++-.+++..++ ++ ..+...|--.| .+ .+...+.. ...+..+...++.-|.++
T Consensus 289 cR~~I~~~~~~~L~~~l---~~------~~ir~lAavvL---~K-L~~~~~~~---------~~si~~La~~~~~~L~~~ 346 (778)
T 3opb_A 289 MRTYITENYLQLLERSL---NV------EDVQIYSALVL---VK-TWSFTKLT---------CINLKQLSEIFINAISRR 346 (778)
T ss_dssp HHHHHHHHHHHHHHHHT---TS------GGGHHHHHHHH---HH-HTGGGTCT---------TCCHHHHHHHHHHHTTTC
T ss_pred HHHHHHHhHHHHHHHHh---cc------HHHHHHHHHHH---HH-HhcCCCCC---------cCcHHHHHHHHHHHHhcC
Confidence 47899888888888775 32 12332333222 22 22111111 123555777888888888
Q ss_pred ChHHHHHHHHHHHHHHHHhCCchhhccccchhhhhccCCCCcccccc-CchhhhHhhhhhhhhhcccCCCccccCcchhh
Q psy5930 887 NDLLREQSMYLLQVFAETQGKSVVQVMEPHKDVLADIIPPKKLLIRN-HSANAQIGLMEGNTFCQSLTPRLFTTDMSIHE 965 (2426)
Q Consensus 887 n~~VR~~aq~~L~~lae~t~~~v~ell~p~k~~Ll~~I~~Kpl~lRa-lpf~~QIG~idaitfcl~L~p~~l~~~~~~~e 965 (2426)
....|+.|-++|..++- +.+|-+.+.-....+...+- .++. ---+.+.|..-.+.-|..-.|..-.......+
T Consensus 347 ~~~~~~~AvEgLaYLSl--~~~VKe~L~~d~~~L~~Lv~----llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~ 420 (778)
T 3opb_A 347 IVPKVEMSVEALAYLSL--KASVKIMIRSNESFTEILLT----MIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXX 420 (778)
T ss_dssp CHHHHHHHHHHHHHHTT--SSHHHHHHHHCHHHHHHHHH----HHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC----
T ss_pred CccHHHHHHHHHHHHhC--CHHHHHHHHhCHHHHHHHHH----HHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhh
Confidence 76666655555555542 56677766655443322110 0011 01246777777777777766654443323333
Q ss_pred HHHHHHHHHHhhccCchhhhcCCCCCCccccchHHHHHHHHHHhhhcCCch------hhHHHHHHHHhhcCCCHHHHHHH
Q psy5930 966 HSSFFQEITNICESSDQALMKLPCYKPISSLVPLRKAAMRALASWHYVPNC------SQKIFNTLFAALERPNPELQEAA 1039 (2426)
Q Consensus 966 l~rll~E~l~LadadD~~l~k~~~~k~~~~lv~LRv~ci~lL~~~~~~~~~------~~rIi~vfFKsL~s~s~ei~~aA 1039 (2426)
|+.|.... .+. ..+....+ .......+| ...++..+-..+.+.++.+.+.|
T Consensus 421 Lk~~A~~~-------~p~-----~~~~d~~~-----------~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A 477 (778)
T 3opb_A 421 XXXXXXXX-------XPA-----ADKVGAEK-----------AAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQV 477 (778)
T ss_dssp --------------------------CCTHH-----------HHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHH
T ss_pred hhhhcccc-------Ccc-----cCcccccc-----------cchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHH
Confidence 33332211 000 00000000 001111111 12577888888889999999999
Q ss_pred HHHHHHHHccCCCCh-hhHHHh-hHHHHhhhcCCCCC----CHhHHHHHHHhh
Q psy5930 1040 FQAMKTFVNGSPIDL-KSVYEV-MKPLLLTLGDYRNL----NLVTARKLSYIV 1086 (2426)
Q Consensus 1040 ~~gLk~vL~~~~~~~-e~L~q~-LRPiL~nLsD~k~L----tv~gLegLarLL 1086 (2426)
-.+|..+ +..+..+ ..++|| ++|++.-|.+.... -...+.+|+||+
T Consensus 478 ~~aL~nL-S~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLl 529 (778)
T 3opb_A 478 VRIIYNI-TRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRML 529 (778)
T ss_dssp HHHHHHH-HTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-cCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHH
Confidence 9999987 4444444 446667 99998888876533 345666777766
No 61
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=55.27 E-value=50 Score=38.97 Aligned_cols=161 Identities=12% Similarity=0.069 Sum_probs=87.7
Q ss_pred HHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHhhCCchhhcchhhHHHHHHHHHHhccCc-hhhhhHhHHHHHHHHHHh
Q psy5930 727 LIDAIAVILGHEDKELCKPGYIALKCIMETATCITGSIENACNLPLMEYLAERMCNLCYER-AWYAKLGGCYAIKFFYNT 805 (2426)
Q Consensus 727 l~DAi~~~l~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~p~~~~L~~rf~~~Cy~~-~w~~K~gG~~gi~~l~~~ 805 (2426)
+.+++-..+++.|..+...|..++..+++.+....+... ...+....++..++.-|... -=..+..+...+..+++.
T Consensus 56 ~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~--~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~ 133 (278)
T 4ffb_C 56 DPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNA--HNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGL 133 (278)
T ss_dssp CTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHH--HHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccc--hhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHh
Confidence 456777888899999999999999887664322111111 11123444555566555333 233344444444444443
Q ss_pred c-hHHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhhhhhhhhHHHHHHHHhhhcC
Q psy5930 806 M-AIKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAETLTVQSKALSEVTNELTRNIT 884 (2426)
Q Consensus 806 ~-~~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~eL~ 884 (2426)
. +..- ++..++..++ .--| .++..+-..|..+++......-+. ...+..++..+..-+.
T Consensus 134 ~~~~~~-------~~e~l~~~l~---~Knp-kv~~~~l~~l~~~l~~fg~~~~~~---------k~~l~~i~~~l~k~l~ 193 (278)
T 4ffb_C 134 DTSITQ-------SVELVIPFFE---KKLP-KLIAAAANCVYELMAAFGLTNVNV---------QTFLPELLKHVPQLAG 193 (278)
T ss_dssp SSSSHH-------HHHHHGGGGG---CSCH-HHHHHHHHHHHHHHHHHTTTTCCH---------HHHHHHHGGGHHHHHT
T ss_pred cCcHHH-------HHHHHHHHHh---ccCH-HHHHHHHHHHHHHHHHhCCCcCCc---------hhHHHHHHHHHHHHHh
Confidence 3 2111 2222333332 2223 345566666667776543221110 1234556667777889
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCch
Q psy5930 885 LPNDLLREQSMYLLQVFAETQGKSV 909 (2426)
Q Consensus 885 s~n~~VR~~aq~~L~~lae~t~~~v 909 (2426)
++|+.||++|..++-.+-...|..+
T Consensus 194 d~~~~VR~aA~~l~~~ly~~~G~~~ 218 (278)
T 4ffb_C 194 HGDRNVRSQTMNLIVEIYKVTGNNS 218 (278)
T ss_dssp CSSHHHHHHHHHHHHHHHTC-----
T ss_pred CCcHHHHHHHHHHHHHHHHHhCcch
Confidence 9999999999999988888777544
No 62
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=54.79 E-value=27 Score=38.74 Aligned_cols=27 Identities=22% Similarity=0.191 Sum_probs=19.8
Q ss_pred HHHHHHHhhcCCChhhhhHHHHHHHHH
Q psy5930 727 LIDAIAVILGHEDKELCKPGYIALKCI 753 (2426)
Q Consensus 727 l~DAi~~~l~~~~~~~~~~~~~~l~~~ 753 (2426)
.++.++..|.+++..++..+..++..+
T Consensus 46 ~~~~L~~~l~~~~~~vr~~a~~~L~~~ 72 (201)
T 3ltj_A 46 AVEPLIKALKDEDAWVRRAAADALGQI 72 (201)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 467777888888888887777777544
No 63
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=52.00 E-value=3.3e+02 Score=31.45 Aligned_cols=131 Identities=10% Similarity=0.030 Sum_probs=76.1
Q ss_pred HHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHhhCCchhhcchhhHHHHHHHHHHhccCchhhhhHhHHHHHHHHHHhch
Q psy5930 728 IDAIAVILGHEDKELCKPGYIALKCIMETATCITGSIENACNLPLMEYLAERMCNLCYERAWYAKLGGCYAIKFFYNTMA 807 (2426)
Q Consensus 728 ~DAi~~~l~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~p~~~~L~~rf~~~Cy~~~w~~K~gG~~gi~~l~~~~~ 807 (2426)
++.++..|.+++..++..+..++..+ |+ ......+..++.++.+..+..++.++.-+-..-.
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~--------~~----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~ 86 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLR--------GG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK 86 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHH--------CC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcc--------CC----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc
Confidence 68889999999999998888888655 32 1244556677788888888888877754421100
Q ss_pred HHHHHHHHHHHHHHHH-HHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhhhhhhhhHHHHHHHHhhhcCCC
Q psy5930 808 IKWVYSHMFVFVKALL-FVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAETLTVQSKALSEVTNELTRNITLP 886 (2426)
Q Consensus 808 ~~wl~~~~~~ivraLl-fvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~eL~s~ 886 (2426)
. ...++..|. ..+.|- ...++..|-..|-.+-... ......++..|+.-+.++
T Consensus 87 -~-----~~~l~~~L~~~~~~d~----~~~vr~~a~~aL~~l~~~~----------------~~~~~~~~~~L~~~l~d~ 140 (280)
T 1oyz_A 87 -C-----EDNVFNILNNMALNDK----SACVRATAIESTAQRCKKN----------------PIYSPKIVEQSQITAFDK 140 (280)
T ss_dssp -T-----HHHHHHHHHHHHHHCS----CHHHHHHHHHHHHHHHHHC----------------GGGHHHHHHHHHHHTTCS
T ss_pred -c-----chHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHhccC----------------CcccHHHHHHHHHHhhCC
Confidence 0 111222222 123332 2334444444443332110 001223566667778889
Q ss_pred ChHHHHHHHHHHHHHH
Q psy5930 887 NDLLREQSMYLLQVFA 902 (2426)
Q Consensus 887 n~~VR~~aq~~L~~la 902 (2426)
+..||..|-.+|..+.
T Consensus 141 ~~~vR~~a~~aL~~~~ 156 (280)
T 1oyz_A 141 STNVRRATAFAISVIN 156 (280)
T ss_dssp CHHHHHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHhcC
Confidence 9999998888876543
No 64
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=51.83 E-value=47 Score=36.32 Aligned_cols=90 Identities=10% Similarity=0.019 Sum_probs=66.4
Q ss_pred ChHHHHHHhhhc---CcHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHhcCccHHH
Q psy5930 2285 KPAIMTYLGKAQ---GLWHRVTLSLEKMAVEGLLKQNRMQNRAPSVADCYDFEPDHAPQQQDIIDQLAEMYSALREEDMW 2361 (2426)
Q Consensus 2285 PP~LikyLgkt~---naW~~ai~~LE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DaL~eLY~~L~E~D~~ 2361 (2426)
.+.....+|..| +-|..|+..+++.... + +.....+-.++.+|..+++.|--
T Consensus 36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------------------~------~~~~~~~~~lg~~~~~~~~~~~A 90 (213)
T 1hh8_A 36 HSRICFNIGCMYTILKNMTEAEKAFTRSINR-------------------D------KHLAVAYFQRGMLYYQTEKYDLA 90 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------C------TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------C------ccchHHHHHHHHHHHHcccHHHH
Confidence 456666677665 7899999999886541 0 11123455799999999998887
Q ss_pred HHHHhhhcC----------------------chhhHHHHHHHHhccHHHHHHHHHHHHHh
Q psy5930 2362 FGLWQKNAK----------------------HKETLYALAYEQQGFYEQALKAYEVTIKK 2399 (2426)
Q Consensus 2362 ~GlWrrra~----------------------~~ET~~ALs~EQ~G~w~~AQ~~YE~a~~k 2399 (2426)
...+++-.. ..-.+.|..|.+.|.|++|.+.|++|...
T Consensus 91 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 91 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 777776533 23467799999999999999999998755
No 65
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=50.97 E-value=4.9e+02 Score=36.98 Aligned_cols=98 Identities=10% Similarity=0.123 Sum_probs=65.4
Q ss_pred cCCchhhHHHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCC------------hhhHHHhhHHHHhhhcCCCCCCHhHH
Q psy5930 1012 YVPNCSQKIFNTLFAALERPNPELQEAAFQAMKTFVNGSPID------------LKSVYEVMKPLLLTLGDYRNLNLVTA 1079 (2426)
Q Consensus 1012 ~~~~~~~rIi~vfFKsL~s~s~ei~~aA~~gLk~vL~~~~~~------------~e~L~q~LRPiL~nLsD~k~Ltv~gL 1079 (2426)
.+++|-.-++.-.|+.+..++++|+++|-.+++.+-+..+.. -+.|++++.-+..+|. .+-.....
T Consensus 559 ~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~--~~~~~~ly 636 (1073)
T 3gjx_A 559 AHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQ--PQQVHTFY 636 (1073)
T ss_dssp HCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCC--HHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcC--HHHHHHHH
Confidence 357777788899999999999999999999999887553321 1444444444444442 23446677
Q ss_pred HHHHHhhhhCCCcc-cHHHHHHHHHH-HHHhhhh
Q psy5930 1080 RKLSYIVQPFPSSF-SEKLCEQLLVN-LKNLFEN 1111 (2426)
Q Consensus 1080 egLarLLeLL~nyF-kveiG~KLLdH-Lk~~~e~ 1111 (2426)
+|++.++.=.++-= +.++=++|+.- +.+|-+.
T Consensus 637 eav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l 670 (1073)
T 3gjx_A 637 EAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSI 670 (1073)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 89999999888744 34444444433 3667653
No 66
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=49.16 E-value=7.4e+02 Score=34.74 Aligned_cols=111 Identities=21% Similarity=0.253 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHhhhcCCchh----hHHHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCCChh--hHHH--hhHHHHhhhc
Q psy5930 998 PLRKAAMRALASWHYVPNCS----QKIFNTLFAALERPNPELQEAAFQAMKTFVNGSPIDLK--SVYE--VMKPLLLTLG 1069 (2426)
Q Consensus 998 ~LRv~ci~lL~~~~~~~~~~----~rIi~vfFKsL~s~s~ei~~aA~~gLk~vL~~~~~~~e--~L~q--~LRPiL~nLs 1069 (2426)
.++..|++.+..+..|-+.. ..++...|+.|.. +++.++|-+||.++++....+.+ .+.+ +|++++.++.
T Consensus 208 ~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~ 285 (980)
T 3ibv_A 208 GTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQ 285 (980)
T ss_dssp HHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHh
Confidence 47899999999999886633 4899999999975 89999999999999987654332 1222 3788887765
Q ss_pred CCCCCCHhHHHHHHHhhhhC----------CCcccHHHHHHHHHHHHHhhhh
Q psy5930 1070 DYRNLNLVTARKLSYIVQPF----------PSSFSEKLCEQLLVNLKNLFEN 1111 (2426)
Q Consensus 1070 D~k~Ltv~gLegLarLLeLL----------~nyFkveiG~KLLdHLk~~~e~ 1111 (2426)
.. .=....+++++||+-=+ +....++...+...|+....+.
T Consensus 286 ~~-~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~ 336 (980)
T 3ibv_A 286 EQ-STDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPY 336 (980)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHH
T ss_pred cc-cccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHH
Confidence 31 23455677888777211 2223345555666777666664
No 67
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=48.98 E-value=3.3e+02 Score=30.63 Aligned_cols=109 Identities=13% Similarity=0.109 Sum_probs=63.5
Q ss_pred HHHHHhccCchhhhhHhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCC
Q psy5930 778 ERMCNLCYERAWYAKLGGCYAIKFFYNTMAIKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIK 857 (2426)
Q Consensus 778 ~rf~~~Cy~~~w~~K~gG~~gi~~l~~~~~~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~ 857 (2426)
+.|...-+.+....+..+|..+.-++..-+..+-.-.+...+..|+..|++-. ..+...|-.+|..+ +...
T Consensus 15 ~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~----~~v~~~a~~~L~~l---~~~~-- 85 (252)
T 4db8_A 15 PQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPN----EQILQEALWALSNI---ASGG-- 85 (252)
T ss_dssp HHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSC----HHHHHHHHHHHHHH---TTSC--
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCC----HHHHHHHHHHHHHH---hcCC--
Confidence 34444445667778888888885444433222222223468889999998754 33344444444332 2111
Q ss_pred CCCchhhhhhhhhhH--HHHHHHHhhhcCCCChHHHHHHHHHHHHHHH
Q psy5930 858 EPVDAETLTVQSKAL--SEVTNELTRNITLPNDLLREQSMYLLQVFAE 903 (2426)
Q Consensus 858 ~~~~~~~~~~~~~~~--~~~~~~lv~eL~s~n~~VR~~aq~~L~~lae 903 (2426)
+ +. ...+ ...+..|+.-|.+++..||+.|-.+|..++.
T Consensus 86 -~---~~----~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 125 (252)
T 4db8_A 86 -N---EQ----IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 125 (252)
T ss_dssp -H---HH----HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred -H---HH----HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Confidence 0 00 1111 1256777888889999999999999888853
No 68
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=47.89 E-value=6.6e+02 Score=34.49 Aligned_cols=164 Identities=11% Similarity=0.064 Sum_probs=94.1
Q ss_pred HHHHHhhcCCChhhhhHHHHHHHHHHHHHHHhhCCchh--hcchhhHHHHHHHHHHhccCc--hhhhhHhHHHHHHHHHH
Q psy5930 729 DAIAVILGHEDKELCKPGYIALKCIMETATCITGSIEN--ACNLPLMEYLAERMCNLCYER--AWYAKLGGCYAIKFFYN 804 (2426)
Q Consensus 729 DAi~~~l~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~--~~~~p~~~~L~~rf~~~Cy~~--~w~~K~gG~~gi~~l~~ 804 (2426)
..+...+.+++..++..|..+|..+ +. ..++... ...-.-...+++.|+.+-.++ ..-.+.-.|-|+.+|..
T Consensus 333 ~~L~~Ll~s~~~~vr~~Al~~L~kl---~s-~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~ 408 (810)
T 3now_A 333 DILKRLYHSKNDGIRVRALVGLCKL---GS-YGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTL 408 (810)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHH---HT-TTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHh---cc-ccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhC
Confidence 7777778777766766555555333 11 1111111 111122456777777765555 56778889999999988
Q ss_pred hchHHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCCC-------------------CCchhhh
Q psy5930 805 TMAIKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIKE-------------------PVDAETL 865 (2426)
Q Consensus 805 ~~~~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~-------------------~~~~~~~ 865 (2426)
.-..++-.-....++..|+..++. .+ ..+.-.|-.+|-.+ +...... ....+..
T Consensus 409 ~~~vk~~lv~d~g~Ip~LV~LL~s--~d--~~i~~~al~~L~NL---t~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~ 481 (810)
T 3now_A 409 DAECKEKLIEDKASIHALMDLARG--GN--QSCLYGVVTTFVNL---CNAYEKQEMLPEMIELAKFAKQHIPEEHELDDV 481 (810)
T ss_dssp SHHHHHHHHHCHHHHHHHHHHHHT--TC--GGGHHHHHHHHHHH---TTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHH
T ss_pred CcHHHHHHHHccchHHHHHHHhCC--CC--hHHHHHHHHHHHHH---cCCchhhhhhHHHHHHHHHhhccCccccccccH
Confidence 776655544446899999999985 22 22233333333333 3211100 0000000
Q ss_pred hhhhhhHH-----HHHHHHhhhcCCCChHHHHHHHHHHHHHHH
Q psy5930 866 TVQSKALS-----EVTNELTRNITLPNDLLREQSMYLLQVFAE 903 (2426)
Q Consensus 866 ~~~~~~~~-----~~~~~lv~eL~s~n~~VR~~aq~~L~~lae 903 (2426)
+...+..+ ..+..|+.=|.|+++.||+.|-.+|.-||.
T Consensus 482 ~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~ 524 (810)
T 3now_A 482 DFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCG 524 (810)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 11111111 256678888899999999999999999984
No 69
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=47.14 E-value=78 Score=33.92 Aligned_cols=78 Identities=14% Similarity=0.063 Sum_probs=59.2
Q ss_pred CcHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHhcCccHHHHHHHhhhc----Cch
Q psy5930 2297 GLWHRVTLSLEKMAVEGLLKQNRMQNRAPSVADCYDFEPDHAPQQQDIIDQLAEMYSALREEDMWFGLWQKNA----KHK 2372 (2426)
Q Consensus 2297 naW~~ai~~LE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DaL~eLY~~L~E~D~~~GlWrrra----~~~ 2372 (2426)
+-|-.|+..++..+.- + +.....|-.|+..|..+++.|-=....++-. ..+
T Consensus 50 g~~~eA~~~~~~al~~-------------------~------P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~ 104 (151)
T 3gyz_A 50 GRIEEAEVFFRFLCIY-------------------D------FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY 104 (151)
T ss_dssp TCHHHHHHHHHHHHHH-------------------C------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC
T ss_pred CCHHHHHHHHHHHHHh-------------------C------CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc
Confidence 6788899999886651 1 1123456789999999999887777766542 222
Q ss_pred --hhHHHHHHHHhccHHHHHHHHHHHHHh
Q psy5930 2373 --ETLYALAYEQQGFYEQALKAYEVTIKK 2399 (2426)
Q Consensus 2373 --ET~~ALs~EQ~G~w~~AQ~~YE~a~~k 2399 (2426)
-.+.|.+|.+.|.+++|.+.|++|...
T Consensus 105 ~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 105 TPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 457799999999999999999999876
No 70
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=46.34 E-value=51 Score=36.76 Aligned_cols=27 Identities=22% Similarity=0.191 Sum_probs=21.1
Q ss_pred HHHHHHHhhcCCChhhhhHHHHHHHHH
Q psy5930 727 LIDAIAVILGHEDKELCKPGYIALKCI 753 (2426)
Q Consensus 727 l~DAi~~~l~~~~~~~~~~~~~~l~~~ 753 (2426)
.+++++..|.+++..++..+..++..+
T Consensus 51 ~~~~L~~~l~~~~~~vr~~a~~aL~~~ 77 (211)
T 3ltm_A 51 AVEPLIKALKDEDAWVRRAAADALGQI 77 (211)
T ss_dssp GHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 567788888888888888887777654
No 71
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=44.92 E-value=71 Score=31.19 Aligned_cols=79 Identities=15% Similarity=0.186 Sum_probs=56.6
Q ss_pred cCcHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHhcCccHHHHHHHhhhcCc-h--
Q psy5930 2296 QGLWHRVTLSLEKMAVEGLLKQNRMQNRAPSVADCYDFEPDHAPQQQDIIDQLAEMYSALREEDMWFGLWQKNAKH-K-- 2372 (2426)
Q Consensus 2296 ~naW~~ai~~LE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DaL~eLY~~L~E~D~~~GlWrrra~~-~-- 2372 (2426)
-+-|..|+..+++.... + ++ ....+-.++.+|..+++.+--...+++-... +
T Consensus 17 ~~~~~~A~~~~~~a~~~-------------------~--~~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 71 (131)
T 1elr_A 17 KKDFDTALKHYDKAKEL-------------------D--PT----NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN 71 (131)
T ss_dssp TTCHHHHHHHHHHHHHH-------------------C--TT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHHhc-------------------C--Cc----cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc
Confidence 47899999999886641 0 00 1234557899999998887766666654221 1
Q ss_pred ----------hhHHHHHHHHhccHHHHHHHHHHHHHh
Q psy5930 2373 ----------ETLYALAYEQQGFYEQALKAYEVTIKK 2399 (2426)
Q Consensus 2373 ----------ET~~ALs~EQ~G~w~~AQ~~YE~a~~k 2399 (2426)
-.+.|..|.+.|.|++|.+.|+++...
T Consensus 72 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 72 REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 235588999999999999999998875
No 72
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=44.53 E-value=65 Score=31.72 Aligned_cols=88 Identities=16% Similarity=0.195 Sum_probs=60.0
Q ss_pred HHHHHHhhh---cCcHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHhcCccHHHHH
Q psy5930 2287 AIMTYLGKA---QGLWHRVTLSLEKMAVEGLLKQNRMQNRAPSVADCYDFEPDHAPQQQDIIDQLAEMYSALREEDMWFG 2363 (2426)
Q Consensus 2287 ~LikyLgkt---~naW~~ai~~LE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DaL~eLY~~L~E~D~~~G 2363 (2426)
.-...+|.. -+-|..|+..+++.... . .+ ....+-.++.+|..+++.|--..
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----------~----------~~----~~~~~~~la~~~~~~~~~~~A~~ 71 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKR-----------N----------PK----DAKLYSNRAACYTKLLEFQLALK 71 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTT-----------C----------TT----CHHHHHHHHHHHTTTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----------C----------CC----cHHHHHHHHHHHHHhccHHHHHH
Confidence 334445543 36788899999876541 0 01 12355678999999988887666
Q ss_pred HHhhhcC-ch-----hhHHHHHHHHhccHHHHHHHHHHHHHh
Q psy5930 2364 LWQKNAK-HK-----ETLYALAYEQQGFYEQALKAYEVTIKK 2399 (2426)
Q Consensus 2364 lWrrra~-~~-----ET~~ALs~EQ~G~w~~AQ~~YE~a~~k 2399 (2426)
.+++-.. .+ -.+.|..|.+.|.|++|.+.|+++...
T Consensus 72 ~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 72 DCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 6664321 12 235588999999999999999998865
No 73
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=43.74 E-value=70 Score=35.58 Aligned_cols=58 Identities=12% Similarity=0.087 Sum_probs=41.0
Q ss_pred HHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHhhCCchhhcchhhHHHHHHHHHHhccCchhhhhHhHHHHHHHH
Q psy5930 727 LIDAIAVILGHEDKELCKPGYIALKCIMETATCITGSIENACNLPLMEYLAERMCNLCYERAWYAKLGGCYAIKFF 802 (2426)
Q Consensus 727 l~DAi~~~l~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~p~~~~L~~rf~~~Cy~~~w~~K~gG~~gi~~l 802 (2426)
.++.++..|.+++..++..+..++..+ |..+ ....+..+..++.|..+...+.++..+
T Consensus 20 ~~~~L~~~L~~~~~~vR~~A~~~L~~~--------~~~~----------~~~~L~~~l~~~~~~vr~~a~~aL~~~ 77 (211)
T 3ltm_A 20 KVEMYIKNLQDDSYYVRRAAAYALGKI--------GDER----------AVEPLIKALKDEDAWVRRAAADALGQI 77 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHH--------CCGG----------GHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHh--------CCcc----------HHHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 578899999999999999888888654 3211 223444555677788887777776554
No 74
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=42.49 E-value=5.3e+02 Score=32.89 Aligned_cols=255 Identities=15% Similarity=0.221 Sum_probs=0.0
Q ss_pred cccccccccchHHHHHHHHHHHHhh---CCC------chhhHHHHHHHHhhccCCCchHHHHHHHhhhcCCCCHHHHHHH
Q psy5930 1295 VENISYVHWKEPKLLVKILLHYFSH---HRH------IIDLLFFILRAVTERLLPDFTFLREFLETTVAQTYSIEWKRKA 1365 (2426)
Q Consensus 1295 ~~~~~~~~~~~~~~l~~i~l~yl~~---~~~------~~dlLF~ll~~~~~~~~~d~~fl~~F~~~~V~~~~s~e~kr~i 1365 (2426)
.+....+.|---....++|++|+.. +|. |..++..+++.|...+...-.+++ .+
T Consensus 123 dep~~e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~Lk-----------------ti 185 (449)
T 2npp_B 123 DEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLK-----------------TT 185 (449)
T ss_dssp CCCCCCTTHHHHHHHHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTTTSSTHHHHHHHH-----------------HH
T ss_pred ccccccccchHHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHH-----------------HH
Q ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHhhHhhHhhhcCCCcc----------cccCCCCCCcccccchhHHHHHHHHhcCC
Q psy5930 1366 FLRFLELFKLALVSQELKAKILQLVLIPCLTVCFERGEGDK----------LIGGTGLPEDEDNKNANLVNEFIAKIISP 1435 (2426)
Q Consensus 1366 l~~fl~~f~~~~~~~~~k~~~L~~iv~P~L~~~f~~~~~~~----------~i~~~~~~~~~~~~~~~~v~~~~~ki~~~ 1435 (2426)
+.++-.-|.+ ++.++-+.|-+-.+..-++...... ++.|-..|- ++--..+..++.=|
T Consensus 186 LhrIY~Kf~~------~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PL------Keehk~fl~~vLlP 253 (449)
T 2npp_B 186 LHRIYGKFLG------LRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPL------KEEHKIFLLKVLLP 253 (449)
T ss_dssp HHHHHHSCTT------THHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSC------CHHHHHHHHHTTGG
T ss_pred HHHHHHHHHH------HHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCC------cHHHHHHHHHHHHH
Q ss_pred CCCCCCccCCChhHHHHHHHHHHHHHhhcccccccccccchhhhcccchhcccCCcccCCCCCCChhhhHHHHH-HHHHH
Q psy5930 1436 ITESPPVFVISDNVRILLLQMCCLIVEQSYHYVYNVSQGKILVNKAKPLIMFAWQLSLLGKNFVDPATRYHGHL-LLAHM 1514 (2426)
Q Consensus 1436 ~~~~~~~~~~~D~lrieLLQLstlLvk~~~~~i~~~~~~~~l~~~rK~lIkFaW~~i~l~~~~~D~~~K~~Ayv-lia~f 1514 (2426)
.........+.. ||+-.+++++.+ .+++-....+-++|+ || .-.+.|+..|+ -+..+
T Consensus 254 Lhk~~~l~~y~~-------qL~ycv~qf~eK------Dp~L~~~vi~~LLk~-WP--------~tns~KevlFL~eleei 311 (449)
T 2npp_B 254 LHKVKSLSVYHP-------QLAYCVVQFLEK------DSTLTEPVVMALLKY-WP--------KTHSPKEVMFLNELEEI 311 (449)
T ss_dssp GGGSSCGGGTHH-------HHHHHHHHHHHH------CGGGHHHHHHHHHHT-CC--------SSCHHHHHHHHHHHHHH
T ss_pred HHccchhHHhHH-------HHHHHHHHHHhc------CcHhHHHHHHHHHHh-CC--------CCCchHHHHHHHHHHHH
Q ss_pred HHhhccCc--chhhHhhHHhhhhcCcchHHHHHHHHHhhcCCCCCCCCCchhhHHHHHHHHHhccCCChhhHHHHHHHHh
Q psy5930 1515 IAKFGVSQ--RVVVQVFLGLLRAHASEVRPIVRQALEILTPAFPGRVDDGQRMLLVYTKKILVEEGHSNPQLSHVLTLIV 1592 (2426)
Q Consensus 1515 I~~f~~P~--KIVlQVfvaLLra~q~E~R~LVrqALDIL~P~Lp~R~~~~~~~w~~~tkkiL~EEgh~~~Ql~hI~qlIV 1592 (2426)
++..+-.. +++..+|..|-|+-.++--.+..+||-+.--- ++.++|.
T Consensus 312 le~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~-------------------------------~i~~li~ 360 (449)
T 2npp_B 312 LDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNE-------------------------------YIMSLIS 360 (449)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCH-------------------------------HHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCH-------------------------------HHHHHHH
Q ss_pred cCCccchhhhhhhHHHHHHHHhhhCCCCCcchhhHHHHHHHHHHHH
Q psy5930 1593 KHYKVYYPVRHGLIQQMIASMQRLGFSSSAMDHKKLSVELADVIIK 1638 (2426)
Q Consensus 1593 RH~dlFY~~R~~fvp~mInsl~kLg~~~n~~E~r~LAiDL~elIi~ 1638 (2426)
+| ++..+|.|..+|.|.+-.-=...-|.+|.++..++..
T Consensus 361 ~n-------~~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~e 399 (449)
T 2npp_B 361 DN-------AAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFME 399 (449)
T ss_dssp TT-------HHHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHHT
T ss_pred hc-------hhhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
No 75
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=42.38 E-value=53 Score=41.80 Aligned_cols=90 Identities=13% Similarity=-0.068 Sum_probs=61.2
Q ss_pred hhcCcHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHhcCccHHHHHHHh-------
Q psy5930 2294 KAQGLWHRVTLSLEKMAVEGLLKQNRMQNRAPSVADCYDFEPDHAPQQQDIIDQLAEMYSALREEDMWFGLWQ------- 2366 (2426)
Q Consensus 2294 kt~naW~~ai~~LE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DaL~eLY~~L~E~D~~~GlWr------- 2366 (2426)
+.++-|..|+.++|+...-. .+ -.. .+-+..-..++.|+.+|..++..|--..+.+
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~----~~------------~lg-~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~ 371 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKM----SS------------VFE-DSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYS 371 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHH----TT------------TBC-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHh----hC------------ccC-hhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 35677999999998854411 00 011 1123344568899999999998775544433
Q ss_pred hh--cCchhh-----HHHHHHHHhccHHHHHHHHHHHHHhh
Q psy5930 2367 KN--AKHKET-----LYALAYEQQGFYEQALKAYEVTIKKG 2400 (2426)
Q Consensus 2367 rr--a~~~ET-----~~ALs~EQ~G~w~~AQ~~YE~a~~k~ 2400 (2426)
+. ...|+| |.|..|..+|.|++|..+|++|..-.
T Consensus 372 ~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 372 KHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp HHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 33 345555 55889999999999999999998653
No 76
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=41.79 E-value=91 Score=34.32 Aligned_cols=122 Identities=13% Similarity=0.093 Sum_probs=71.5
Q ss_pred HHHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHhhCCchhhcchhhHHHHHHHHHHhccCchhhhhHhHHHHHHHHHHh
Q psy5930 726 VLIDAIAVILGHEDKELCKPGYIALKCIMETATCITGSIENACNLPLMEYLAERMCNLCYERAWYAKLGGCYAIKFFYNT 805 (2426)
Q Consensus 726 vl~DAi~~~l~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~p~~~~L~~rf~~~Cy~~~w~~K~gG~~gi~~l~~~ 805 (2426)
...+.++..|.+++..++..+..++..+ |.. + ....+..+..++.|..+..++.++..+-.
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~--------~~~------~----~~~~L~~~l~~~~~~vr~~a~~~L~~~~~- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKI--------GDE------R----AVEPLIKALKDEDAWVRRAAADALGQIGD- 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHH--------CCG------G----GHHHHHHHTTCSSHHHHHHHHHHHHHHCC-
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhc--------CCh------h----HHHHHHHHHcCCCHHHHHHHHHHHHhhCC-
Confidence 4778899999999999999998888754 321 1 22344455567788888887777755421
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhhhhhhhhHHHHHHHHhhhcCC
Q psy5930 806 MAIKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAETLTVQSKALSEVTNELTRNITL 885 (2426)
Q Consensus 806 ~~~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~eL~s 885 (2426)
.+.+..|+..+.|-. ..++..|-..|-.+ .. + . .+..|+.-+.+
T Consensus 75 ----------~~~~~~L~~~l~d~~----~~vr~~a~~aL~~~----~~----~----------~----~~~~L~~~l~d 118 (201)
T 3ltj_A 75 ----------ERAVEPLIKALKDED----GWVRQSAAVALGQI----GD----E----------R----AVEPLIKALKD 118 (201)
T ss_dssp ----------GGGHHHHHHHTTCSS----HHHHHHHHHHHHHH----CC----G----------G----GHHHHHHHTTC
T ss_pred ----------HHHHHHHHHHHcCCC----HHHHHHHHHHHHHh----Cc----H----------H----HHHHHHHHHcC
Confidence 134555566666532 22343444333221 00 0 0 12233444566
Q ss_pred CChHHHHHHHHHHHHHH
Q psy5930 886 PNDLLREQSMYLLQVFA 902 (2426)
Q Consensus 886 ~n~~VR~~aq~~L~~la 902 (2426)
++..||..|-.+|..+.
T Consensus 119 ~~~~vr~~a~~aL~~~~ 135 (201)
T 3ltj_A 119 EDWFVRIAAAFALGEIG 135 (201)
T ss_dssp SSHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 77777777766666554
No 77
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=41.23 E-value=94 Score=31.71 Aligned_cols=86 Identities=15% Similarity=0.084 Sum_probs=61.8
Q ss_pred HHHHhhhc---CcHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHhcCccHHHHHHH
Q psy5930 2289 MTYLGKAQ---GLWHRVTLSLEKMAVEGLLKQNRMQNRAPSVADCYDFEPDHAPQQQDIIDQLAEMYSALREEDMWFGLW 2365 (2426)
Q Consensus 2289 ikyLgkt~---naW~~ai~~LE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DaL~eLY~~L~E~D~~~GlW 2365 (2426)
.+-+|..| +-|..|+...++.+.- + +.....+-.++..|..+++.+-=...+
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~-------------------~------p~~~~~~~~~~~~~~~~~~~~~A~~~~ 70 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKR-------------------D------PENAILYSNRAACLTKLMEFQRALDDC 70 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------C------TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------C------CCCHHHHHHHhhHHHhhccHHHHHHHH
Confidence 34456554 7899999999886541 1 111235567899999999888766666
Q ss_pred hhhc----Cch--hhHHHHHHHHhccHHHHHHHHHHHHHh
Q psy5930 2366 QKNA----KHK--ETLYALAYEQQGFYEQALKAYEVTIKK 2399 (2426)
Q Consensus 2366 rrra----~~~--ET~~ALs~EQ~G~w~~AQ~~YE~a~~k 2399 (2426)
++-- .+. -.+.|..|.+.|.|++|.+.|++|...
T Consensus 71 ~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 71 DTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 6432 222 346789999999999999999999875
No 78
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=40.90 E-value=85 Score=32.35 Aligned_cols=78 Identities=13% Similarity=0.052 Sum_probs=58.8
Q ss_pred CcHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHhcCccHHHHHHHhhhc----Cch
Q psy5930 2297 GLWHRVTLSLEKMAVEGLLKQNRMQNRAPSVADCYDFEPDHAPQQQDIIDQLAEMYSALREEDMWFGLWQKNA----KHK 2372 (2426)
Q Consensus 2297 naW~~ai~~LE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DaL~eLY~~L~E~D~~~GlWrrra----~~~ 2372 (2426)
+-|..|+..++..+.. + +.....+-.|+.+|..+++.|-=...+++-. ..+
T Consensus 32 g~~~~A~~~~~~al~~-------------------~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 86 (142)
T 2xcb_A 32 GKWDDAQKIFQALCML-------------------D------HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEP 86 (142)
T ss_dssp TCHHHHHHHHHHHHHH-------------------C------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred ccHHHHHHHHHHHHHh-------------------C------CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence 7788999999876541 1 1123456679999999999888777777542 222
Q ss_pred --hhHHHHHHHHhccHHHHHHHHHHHHHh
Q psy5930 2373 --ETLYALAYEQQGFYEQALKAYEVTIKK 2399 (2426)
Q Consensus 2373 --ET~~ALs~EQ~G~w~~AQ~~YE~a~~k 2399 (2426)
-.+.|..|.+.|.+++|.+.|+++...
T Consensus 87 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 87 RFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 346788999999999999999999876
No 79
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=40.00 E-value=95 Score=30.67 Aligned_cols=82 Identities=12% Similarity=0.090 Sum_probs=56.9
Q ss_pred cCcHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHhcCccHHHHHHHhhhc-Cch--
Q psy5930 2296 QGLWHRVTLSLEKMAVEGLLKQNRMQNRAPSVADCYDFEPDHAPQQQDIIDQLAEMYSALREEDMWFGLWQKNA-KHK-- 2372 (2426)
Q Consensus 2296 ~naW~~ai~~LE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DaL~eLY~~L~E~D~~~GlWrrra-~~~-- 2372 (2426)
-+-|-.|+..++..... .| ++ ......+-.++.+|..+++.|--...+++-. .+|
T Consensus 15 ~~~~~~A~~~~~~~~~~-----------~p----------~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~ 72 (129)
T 2xev_A 15 NGKYDDASQLFLSFLEL-----------YP----------NG-VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH 72 (129)
T ss_dssp TTCHHHHHHHHHHHHHH-----------CS----------SS-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred hCCHHHHHHHHHHHHHH-----------CC----------CC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC
Confidence 46788999999886551 00 11 1112345568999999998887666665432 222
Q ss_pred ----h--hHHHHHHHHhccHHHHHHHHHHHHHh
Q psy5930 2373 ----E--TLYALAYEQQGFYEQALKAYEVTIKK 2399 (2426)
Q Consensus 2373 ----E--T~~ALs~EQ~G~w~~AQ~~YE~a~~k 2399 (2426)
+ -+.|.+|.+.|.+++|.+.|+++...
T Consensus 73 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 73 DKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2 24588999999999999999999876
No 80
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=37.89 E-value=98 Score=32.52 Aligned_cols=79 Identities=13% Similarity=0.077 Sum_probs=58.2
Q ss_pred cCcHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHhcCccHHHHHHHhhh----cCc
Q psy5930 2296 QGLWHRVTLSLEKMAVEGLLKQNRMQNRAPSVADCYDFEPDHAPQQQDIIDQLAEMYSALREEDMWFGLWQKN----AKH 2371 (2426)
Q Consensus 2296 ~naW~~ai~~LE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DaL~eLY~~L~E~D~~~GlWrrr----a~~ 2371 (2426)
-+-|..|+..++..+.. + +.....+-.|+.+|..+++.|-=...+++- -..
T Consensus 34 ~g~~~~A~~~~~~al~~-------------------~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 88 (148)
T 2vgx_A 34 SGXYEDAHXVFQALCVL-------------------D------HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE 88 (148)
T ss_dssp TTCHHHHHHHHHHHHHH-------------------C------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred cCChHHHHHHHHHHHHc-------------------C------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 36788999999876541 1 112345667999999999988776666653 223
Q ss_pred hh--hHHHHHHHHhccHHHHHHHHHHHHHh
Q psy5930 2372 KE--TLYALAYEQQGFYEQALKAYEVTIKK 2399 (2426)
Q Consensus 2372 ~E--T~~ALs~EQ~G~w~~AQ~~YE~a~~k 2399 (2426)
++ -+.|.+|.+.|.+++|.+.|++|...
T Consensus 89 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 89 PRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33 45688999999999999999999876
No 81
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=37.77 E-value=1.4e+02 Score=33.88 Aligned_cols=110 Identities=15% Similarity=0.114 Sum_probs=71.3
Q ss_pred hHHHHHHHhhhcCCCCCCChHHHHHHhhhc---CcHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCcchhhh
Q psy5930 2267 SINTIYESLAHCNPPLPIKPAIMTYLGKAQ---GLWHRVTLSLEKMAVEGLLKQNRMQNRAPSVADCYDFEPDHAPQQQD 2343 (2426)
Q Consensus 2267 viqtlLegi~~c~p~i~lPP~LikyLgkt~---naW~~ai~~LE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2343 (2426)
++..+-+.+. -.|.-+..+...-.+|..| +-|-.|+..++..+.. . +++ +....
T Consensus 34 A~~~~~~~l~-~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~-----------~----------p~~-~~~~~ 90 (261)
T 3qky_A 34 AIEYFKAVFT-YGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI-----------Y----------QID-PRVPQ 90 (261)
T ss_dssp HHHHHHHHGG-GCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------C----------TTC-TTHHH
T ss_pred HHHHHHHHHH-hCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH-----------C----------CCC-chhHH
Confidence 4444444444 3354444477777788776 7899999999987651 0 011 11123
Q ss_pred HHHHHHHHHHh--------cCccHHHHHHHhhh-cCchh----------------------hHHHHHHHHhccHHHHHHH
Q psy5930 2344 IIDQLAEMYSA--------LREEDMWFGLWQKN-AKHKE----------------------TLYALAYEQQGFYEQALKA 2392 (2426)
Q Consensus 2344 ~~DaL~eLY~~--------L~E~D~~~GlWrrr-a~~~E----------------------T~~ALs~EQ~G~w~~AQ~~ 2392 (2426)
.+-.|+..|.. ++..|--...+++- ..+|+ -..|..|.+.|.|++|...
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 34457777777 66666666666543 22332 4568899999999999999
Q ss_pred HHHHHHh
Q psy5930 2393 YEVTIKK 2399 (2426)
Q Consensus 2393 YE~a~~k 2399 (2426)
|+++...
T Consensus 171 ~~~~l~~ 177 (261)
T 3qky_A 171 YEAVFDA 177 (261)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999876
No 82
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=36.46 E-value=1e+02 Score=31.45 Aligned_cols=85 Identities=13% Similarity=0.134 Sum_probs=58.2
Q ss_pred HHHhhhc---CcHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHhcCccHHHHHHHh
Q psy5930 2290 TYLGKAQ---GLWHRVTLSLEKMAVEGLLKQNRMQNRAPSVADCYDFEPDHAPQQQDIIDQLAEMYSALREEDMWFGLWQ 2366 (2426)
Q Consensus 2290 kyLgkt~---naW~~ai~~LE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DaL~eLY~~L~E~D~~~GlWr 2366 (2426)
+-||..+ +-|-.|+...++.+.- ++ + .-..+-.++.+|..+++.|-=...++
T Consensus 12 ~~lG~~~~~~~~~~~A~~~y~~Al~~-------------------~p--~----~~~~~~nlg~~~~~~~~~~~A~~~~~ 66 (127)
T 4gcn_A 12 KDLGNAAYKQKDFEKAHVHYDKAIEL-------------------DP--S----NITFYNNKAAVYFEEKKFAECVQFCE 66 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-------------------CT--T----CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-------------------CC--C----CHHHHHhHHHHHHHhhhHHHHHHHHH
Confidence 3455544 6788899999876541 11 1 12345568999999998776655555
Q ss_pred hhcC-c------------hhhHHHHHHHHhccHHHHHHHHHHHHHh
Q psy5930 2367 KNAK-H------------KETLYALAYEQQGFYEQALKAYEVTIKK 2399 (2426)
Q Consensus 2367 rra~-~------------~ET~~ALs~EQ~G~w~~AQ~~YE~a~~k 2399 (2426)
+--. . .-.+.|..|+..|.|++|.+.|++|...
T Consensus 67 ~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 67 KAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3211 1 1345788999999999999999998865
No 83
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=36.37 E-value=1.1e+03 Score=33.14 Aligned_cols=121 Identities=16% Similarity=0.114 Sum_probs=75.2
Q ss_pred CCchhhHHHHHHHHhhcCCCHHHHHHHHHHHHHHHccCCC----------C--hhhHHHhhHHHHhhhcCCCCCCHhHHH
Q psy5930 1013 VPNCSQKIFNTLFAALERPNPELQEAAFQAMKTFVNGSPI----------D--LKSVYEVMKPLLLTLGDYRNLNLVTAR 1080 (2426)
Q Consensus 1013 ~~~~~~rIi~vfFKsL~s~s~ei~~aA~~gLk~vL~~~~~----------~--~e~L~q~LRPiL~nLsD~k~Ltv~gLe 1080 (2426)
+|++-..++..+|+.|..++|.++++|-.+++..-+..+. . -+.|.+.+..+...+..... ....+
T Consensus 534 ~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~--~~lye 611 (1023)
T 4hat_C 534 HWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQV--HTFYK 611 (1023)
T ss_dssp CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHH--HHHHH
T ss_pred cHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHH--HHHHH
Confidence 5677778999999999989999999999999987754221 1 24455555555554433222 57889
Q ss_pred HHHHhhhhCCCcc-cHHHHHHHHHHH-HHhhhhh-hhhh-cCCCCCCcchhHHHHHHHh
Q psy5930 1081 KLSYIVQPFPSSF-SEKLCEQLLVNL-KNLFENI-VAQK-ENPPKNSETEKIIVVIIGI 1135 (2426)
Q Consensus 1081 gLarLLeLL~nyF-kveiG~KLLdHL-k~~~e~~-~~~~-~~~~~~~~~~kii~aIinI 1135 (2426)
|++.+++=.++-= +.+.=++|+..+ .+|-+.. ...+ ...+.+.+..+.++.|+..
T Consensus 612 ai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~ 670 (1023)
T 4hat_C 612 ACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKT 670 (1023)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHH
Confidence 9999999998543 444445555444 4555431 1111 2223333445555555553
No 84
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=35.61 E-value=1e+02 Score=29.38 Aligned_cols=79 Identities=16% Similarity=0.116 Sum_probs=57.1
Q ss_pred cCcHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHhcCccHHHHHHHhhhc-Cch--
Q psy5930 2296 QGLWHRVTLSLEKMAVEGLLKQNRMQNRAPSVADCYDFEPDHAPQQQDIIDQLAEMYSALREEDMWFGLWQKNA-KHK-- 2372 (2426)
Q Consensus 2296 ~naW~~ai~~LE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DaL~eLY~~L~E~D~~~GlWrrra-~~~-- 2372 (2426)
-+.|..|+..+++.... + ++ ....+-.++.+|..+++.|.-...+++-. ..+
T Consensus 17 ~~~~~~A~~~~~~~~~~-------------------~--~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 71 (118)
T 1elw_A 17 VGNIDDALQCYSEAIKL-------------------D--PH----NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW 71 (118)
T ss_dssp TTCHHHHHHHHHHHHHH-------------------C--TT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred cccHHHHHHHHHHHHHH-------------------C--CC----cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc
Confidence 47899999999886541 0 00 12345568999999998887777776542 122
Q ss_pred ---hhHHHHHHHHhccHHHHHHHHHHHHHh
Q psy5930 2373 ---ETLYALAYEQQGFYEQALKAYEVTIKK 2399 (2426)
Q Consensus 2373 ---ET~~ALs~EQ~G~w~~AQ~~YE~a~~k 2399 (2426)
-.+.|..|.+.|.+++|.+.|+++...
T Consensus 72 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 72 GKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 245688999999999999999988754
No 85
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=35.45 E-value=79 Score=31.99 Aligned_cols=80 Identities=10% Similarity=0.101 Sum_probs=58.5
Q ss_pred hcCcHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHhcCccHHHHHHHhhhc----C
Q psy5930 2295 AQGLWHRVTLSLEKMAVEGLLKQNRMQNRAPSVADCYDFEPDHAPQQQDIIDQLAEMYSALREEDMWFGLWQKNA----K 2370 (2426)
Q Consensus 2295 t~naW~~ai~~LE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DaL~eLY~~L~E~D~~~GlWrrra----~ 2370 (2426)
.-+-|-.|+..++..+.. + +.....+-.|+.+|..+++.+-=...+++-. .
T Consensus 29 ~~g~~~~A~~~~~~al~~-------------------~------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 83 (121)
T 1hxi_A 29 KLANLAEAALAFEAVCQK-------------------E------PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK 83 (121)
T ss_dssp HTTCHHHHHHHHHHHHHH-------------------S------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HcCCHHHHHHHHHHHHHH-------------------C------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 346788999999886651 1 1112355579999999999988888887642 2
Q ss_pred chh--hHHHHHHHHhccHHHHHHHHHHHHHh
Q psy5930 2371 HKE--TLYALAYEQQGFYEQALKAYEVTIKK 2399 (2426)
Q Consensus 2371 ~~E--T~~ALs~EQ~G~w~~AQ~~YE~a~~k 2399 (2426)
.++ .+.|..|.+.|.+++|...|+++...
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 84 DIAVHAALAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 333 35678999999999999999988754
No 86
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=35.27 E-value=1.4e+02 Score=29.66 Aligned_cols=80 Identities=15% Similarity=0.066 Sum_probs=57.8
Q ss_pred cCcHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHhcCccHHHHHHHhhhc----Cc
Q psy5930 2296 QGLWHRVTLSLEKMAVEGLLKQNRMQNRAPSVADCYDFEPDHAPQQQDIIDQLAEMYSALREEDMWFGLWQKNA----KH 2371 (2426)
Q Consensus 2296 ~naW~~ai~~LE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DaL~eLY~~L~E~D~~~GlWrrra----~~ 2371 (2426)
.+-|..|+..+++.+.. + +.....+-.++..|..+++.|--...+++-. ..
T Consensus 17 ~~~~~~A~~~~~~al~~-------------------~------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 71 (126)
T 3upv_A 17 KSDWPNAVKAYTEMIKR-------------------A------PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF 71 (126)
T ss_dssp TTCHHHHHHHHHHHHHH-------------------C------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hcCHHHHHHHHHHHHHh-------------------C------CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 37899999999886651 0 1112456678999999998777666665432 12
Q ss_pred h--hhHHHHHHHHhccHHHHHHHHHHHHHhh
Q psy5930 2372 K--ETLYALAYEQQGFYEQALKAYEVTIKKG 2400 (2426)
Q Consensus 2372 ~--ET~~ALs~EQ~G~w~~AQ~~YE~a~~k~ 2400 (2426)
+ -.+.|..|.+.|.|++|.+.|+++....
T Consensus 72 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 72 VRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 2 3456889999999999999999998763
No 87
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=34.75 E-value=2.4e+02 Score=36.44 Aligned_cols=162 Identities=14% Similarity=0.132 Sum_probs=79.8
Q ss_pred HHHHHhhhcCCCChHHHHHHHHHHHHHHHHhCCchhhccccc--hhhhhccCCCCccccccCchhhhHhhhhhhhhhccc
Q psy5930 875 VTNELTRNITLPNDLLREQSMYLLQVFAETQGKSVVQVMEPH--KDVLADIIPPKKLLIRNHSANAQIGLMEGNTFCQSL 952 (2426)
Q Consensus 875 ~~~~lv~eL~s~n~~VR~~aq~~L~~lae~t~~~v~ell~p~--k~~Ll~~I~~Kpl~lRalpf~~QIG~idaitfcl~L 952 (2426)
.+..|+.-|.+++..||+.|-.+|.-||.-. ....+.+... -..|+..+-.... ......++-...-++.-+..-
T Consensus 163 aip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~-~~~r~~i~~~g~i~~Ll~lL~~~~~--~~~~~~~~~~a~~~L~nl~~~ 239 (529)
T 3tpo_A 163 AIPAFISLLASPHAHISEQAVWALGNIAGAG-SAFRDLVIKHGAIDPLLALLAVPDL--STLACGYLRNLTWTLSNLCRN 239 (529)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTCHHHHHHTTCSSCG--GGSCHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhccC-HHHHHHHHHcCCcHHHHHHHhccch--hHhHHHHHHHHHHHHHHHHhc
Confidence 4667788889999999999999998887421 1111111000 0111111111111 111112222222222222222
Q ss_pred CCCccccCcchhhHHHHHHHHHHhhccCchhhhcCCCCCCccccchHHHHHHHHHHhhhcCCchh-h-----HHHHHHHH
Q psy5930 953 TPRLFTTDMSIHEHSSFFQEITNICESSDQALMKLPCYKPISSLVPLRKAAMRALASWHYVPNCS-Q-----KIFNTLFA 1026 (2426)
Q Consensus 953 ~p~~l~~~~~~~el~rll~E~l~LadadD~~l~k~~~~k~~~~lv~LRv~ci~lL~~~~~~~~~~-~-----rIi~vfFK 1026 (2426)
..+...+. .....+.-+..+...+|+. .+..|..+|+.....++.. + .++..+.+
T Consensus 240 ~~~~~~~~----~~~~~lp~L~~LL~~~~~~---------------v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~ 300 (529)
T 3tpo_A 240 KNPAPPLD----AVEQILPTLVRLLHHNDPE---------------VLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK 300 (529)
T ss_dssp CTTCCCHH----HHHHHHHHHHHHTTSSCHH---------------HHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHH
T ss_pred ccchhhHH----HHhhHHHHHHHHhcCCcHH---------------HHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHH
Confidence 22222221 1222333334444444433 3445555555443333322 1 45667888
Q ss_pred hhcCCCHHHHHHHHHHHHHHHccCCCChhhHH
Q psy5930 1027 ALERPNPELQEAAFQAMKTFVNGSPIDLKSVY 1058 (2426)
Q Consensus 1027 sL~s~s~ei~~aA~~gLk~vL~~~~~~~e~L~ 1058 (2426)
.|.+.+++++..|-.+|.....++......+.
T Consensus 301 lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~ 332 (529)
T 3tpo_A 301 LLGATELPIVTPALRAIGNIVTGTDEQTQKVI 332 (529)
T ss_dssp HHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HhcCCChhHHHHHHHHHHHHHccchHHHHHHh
Confidence 89999999999999999998766543333333
No 88
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=34.47 E-value=1.5e+02 Score=28.65 Aligned_cols=79 Identities=13% Similarity=-0.008 Sum_probs=56.5
Q ss_pred cCcHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHhcCccHHHHHHHhhhcC-ch--
Q psy5930 2296 QGLWHRVTLSLEKMAVEGLLKQNRMQNRAPSVADCYDFEPDHAPQQQDIIDQLAEMYSALREEDMWFGLWQKNAK-HK-- 2372 (2426)
Q Consensus 2296 ~naW~~ai~~LE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DaL~eLY~~L~E~D~~~GlWrrra~-~~-- 2372 (2426)
.+-|..|+..+++.... + .+ ....+-.++.+|..+++.+.-...+++-.. .+
T Consensus 25 ~~~~~~A~~~~~~~~~~-------------------~--~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 79 (131)
T 2vyi_A 25 VENFEAAVHFYGKAIEL-------------------N--PA----NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY 79 (131)
T ss_dssp TTCHHHHHHHHHHHHHH-------------------C--TT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred ccCHHHHHHHHHHHHHc-------------------C--CC----CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC
Confidence 37788999999886541 0 00 123455789999999888776666665321 12
Q ss_pred ---hhHHHHHHHHhccHHHHHHHHHHHHHh
Q psy5930 2373 ---ETLYALAYEQQGFYEQALKAYEVTIKK 2399 (2426)
Q Consensus 2373 ---ET~~ALs~EQ~G~w~~AQ~~YE~a~~k 2399 (2426)
-.+.|..|.+.|.|++|.+.|+++...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 80 SKAYGRMGLALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 245588999999999999999999876
No 89
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=34.39 E-value=1.3e+02 Score=31.64 Aligned_cols=88 Identities=18% Similarity=0.081 Sum_probs=61.7
Q ss_pred HHHHHHhhhc---CcHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHhcCccHHHHH
Q psy5930 2287 AIMTYLGKAQ---GLWHRVTLSLEKMAVEGLLKQNRMQNRAPSVADCYDFEPDHAPQQQDIIDQLAEMYSALREEDMWFG 2363 (2426)
Q Consensus 2287 ~LikyLgkt~---naW~~ai~~LE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DaL~eLY~~L~E~D~~~G 2363 (2426)
.....+|..+ +.|..|+..+++.+.. + +.....+-.|+.+|..+++.|-=.-
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~-------------------~------p~~~~~~~~l~~~~~~~g~~~~A~~ 66 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSI-------------------A------PANPIYLSNRAAAYSASGQHEKAAE 66 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------S------TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------C------CcCHHHHHHHHHHHHHccCHHHHHH
Confidence 3444455444 7899999999886641 1 1112456679999999998877666
Q ss_pred HHhhhc----Cch--hhHHHHHHHHhccHHHHHHHHHHHHHh
Q psy5930 2364 LWQKNA----KHK--ETLYALAYEQQGFYEQALKAYEVTIKK 2399 (2426)
Q Consensus 2364 lWrrra----~~~--ET~~ALs~EQ~G~w~~AQ~~YE~a~~k 2399 (2426)
.+++-. ..+ -.+.|..|.+.|.|++|.+.|+++...
T Consensus 67 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 67 DAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 666432 112 346688999999999999999998866
No 90
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=34.28 E-value=2.5e+02 Score=30.11 Aligned_cols=57 Identities=5% Similarity=-0.167 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHhcCccHHHHHHHhhhcC-ch---h--hHHHHHHHHhccHHHHHHHHHHHHHh
Q psy5930 2343 DIIDQLAEMYSALREEDMWFGLWQKNAK-HK---E--TLYALAYEQQGFYEQALKAYEVTIKK 2399 (2426)
Q Consensus 2343 ~~~DaL~eLY~~L~E~D~~~GlWrrra~-~~---E--T~~ALs~EQ~G~w~~AQ~~YE~a~~k 2399 (2426)
..+-.++.+|..+++.|--...+++-.. .+ + ...|..|.+.|.|++|.+.|+++...
T Consensus 114 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 176 (225)
T 2vq2_A 114 IANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSR 176 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3444566666666666555444443321 11 1 23355666667777777776666554
No 91
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=34.09 E-value=1.1e+03 Score=32.36 Aligned_cols=186 Identities=11% Similarity=-0.079 Sum_probs=102.0
Q ss_pred cchhHHHhHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccccCCCChHHHHHHHHHhhcCCChhhhhHHHHHHHHHHHHH
Q psy5930 678 LIKELRKDSLLYTVLVVRHYTLVAITQQTGPFPLYGKSALLEGTMDPLVLIDAIAVILGHEDKELCKPGYIALKCIMETA 757 (2426)
Q Consensus 678 ~~~~l~~~a~~f~~~v~rhf~l~~i~~~~~~~~~~~~~~~~~~~ld~~vl~DAi~~~l~~~~~~~~~~~~~~l~~~~~~~ 757 (2426)
..++.++.|...+.+++.+--.....-..| .+..++..|.+.....++.|..||..+.-.
T Consensus 507 ~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~G-------------------aip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~- 566 (810)
T 3now_A 507 ESHNSQELIARVLNAVCGLKELRGKVVQEG-------------------GVKALLRMALEGTEKGKRHATQALARIGIT- 566 (810)
T ss_dssp CCHHHHHHHHHHHHHHHTSHHHHHHHHHTT-------------------HHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHCC-------------------CHHHHHHHHccCCHHHHHHHHHHHHHHhcC-
Confidence 445677777777777654432222111111 567788888888888888888888766432
Q ss_pred HHhhCCchhhcchhhHHHHHHHHHHhccCc-hhhhhHhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhcCCCcccchh
Q psy5930 758 TCITGSIENACNLPLMEYLAERMCNLCYER-AWYAKLGGCYAIKFFYNTMAIKWVYSHMFVFVKALLFVMMDLTGEVSSG 836 (2426)
Q Consensus 758 ~~i~~~~~~~~~~p~~~~L~~rf~~~Cy~~-~w~~K~gG~~gi~~l~~~~~~~wl~~~~~~ivraLlfvlkD~p~e~~~~ 836 (2426)
++.+.+....-.....+.+++++... .=..+.-++.++.-|...-+...-.--+-..+..|...+.+-. ..
T Consensus 567 ----~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~----~~ 638 (810)
T 3now_A 567 ----INPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDH----LY 638 (810)
T ss_dssp ----SCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCC----TT
T ss_pred ----CChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCC----HH
Confidence 22222211111123567777877644 2234445677777666432211111111234555666555432 33
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCchhhhhhhhhhH--HHHHHHHhhhcCCCChHHHHHHHHHHHHHHHH
Q psy5930 837 AIDEARRNLKQLIVLCATPIKEPVDAETLTVQSKAL--SEVTNELTRNITLPNDLLREQSMYLLQVFAET 904 (2426)
Q Consensus 837 ~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~lv~eL~s~n~~VR~~aq~~L~~lae~ 904 (2426)
+...|-.++-.+.. . + +.+.+.. ...+..|+.=+.+++..||+.|-.+|..++.-
T Consensus 639 Vq~~A~~~L~NLa~----~---~------~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~ 695 (810)
T 3now_A 639 LTRAAAQCLCNLVM----S---E------DVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSV 695 (810)
T ss_dssp HHHHHHHHHHHHTT----S---H------HHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC----C---h------HHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCC
Confidence 45556666654431 1 0 1111111 12566777777888999999999999888863
No 92
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=34.04 E-value=59 Score=45.80 Aligned_cols=104 Identities=12% Similarity=0.081 Sum_probs=69.2
Q ss_pred HHHHHHHhhcCCC-hhhhhHHHHHHHHHHHHHHHhhCCchhhcchhhHHHHHHHHHHhccC--chh----------hhhH
Q psy5930 727 LIDAIAVILGHED-KELCKPGYIALKCIMETATCITGSIENACNLPLMEYLAERMCNLCYE--RAW----------YAKL 793 (2426)
Q Consensus 727 l~DAi~~~l~~~~-~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~p~~~~L~~rf~~~Cy~--~~w----------~~K~ 793 (2426)
+.+.++..|.++. -|||+.|..+|.-++. ++. .......+.++|...|.. ..+ .++.
T Consensus 844 i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~------c~~----~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH 913 (997)
T 1vsy_5 844 ILEFVVSNLYNEQFVEVRVRAASILSDIVH------NWK----EEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIH 913 (997)
T ss_dssp THHHHTTTTTCSSCHHHHHHHHHHHHHHHH------SCC----SHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHHHH------cCC----chhhHHHHHHHHHHHHhhcccccccccccchHHHHHH
Confidence 6888999999999 9999999999876643 110 002224566777777755 222 6889
Q ss_pred hHHHHHHHHHHhch-----HHHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHH
Q psy5930 794 GGCYAIKFFYNTMA-----IKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLI 849 (2426)
Q Consensus 794 gG~~gi~~l~~~~~-----~~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll 849 (2426)
||++|+..++.-+| +.|+=+.... |-....+ |..+...+++++-.--
T Consensus 914 ~aVLgL~AlV~a~Py~vP~P~w~P~~l~~--------La~~~~~-~~~i~~tvk~tlseFk 965 (997)
T 1vsy_5 914 GNVLGLGAIISAFPYVFPLPPWIPKNLSN--------LSSWART-SGMTGNAAKNTISEFK 965 (997)
T ss_dssp HHHHHHHHHHTTCSCCSSCCTHHHHHHHH--------HHTTSSS-CSSHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCCCCCcccHHHHHH--------HHHHhCC-CCchHHHHHHHHHHHH
Confidence 99999999999883 6897553322 2223334 4445556666665533
No 93
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=33.65 E-value=6.8e+02 Score=29.83 Aligned_cols=152 Identities=10% Similarity=-0.002 Sum_probs=88.1
Q ss_pred HHHHHHH-hhcCCChhhhhHHHHHHHHHHHHHHHhhCCch---hhcchhhHHHHHHHHHHhccCchhhhhHhHHHHHHHH
Q psy5930 727 LIDAIAV-ILGHEDKELCKPGYIALKCIMETATCITGSIE---NACNLPLMEYLAERMCNLCYERAWYAKLGGCYAIKFF 802 (2426)
Q Consensus 727 l~DAi~~-~l~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~---~~~~~p~~~~L~~rf~~~Cy~~~w~~K~gG~~gi~~l 802 (2426)
-+..++. .|.+++++++..|..+|..+.. ++.+ .+.+...+..|+.-+-+ ++.=..+..++-+|..+
T Consensus 82 ~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~------~n~~~~~~vv~~g~l~~Ll~LL~~---~~~~~v~~~A~~ALsnl 152 (296)
T 1xqr_A 82 GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQ------NVAAIQEQVLGLGALRKLLRLLDR---DACDTVRVKALFAISCL 152 (296)
T ss_dssp HHHHHHHTTTTCSSHHHHHHHHHHHHHHHT------TCHHHHHHHHHTTHHHHHHHHHHH---CSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHHHHHh------CCHHHHHHHHHCCCHHHHHHHHcc---CCCHHHHHHHHHHHHHH
Confidence 3467788 9999999999999999987753 1111 01111222333333322 11223455666777778
Q ss_pred HHhchH--HHHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHcCCCCCCCchhhhhhhhhhHHHHHHHHh
Q psy5930 803 YNTMAI--KWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAETLTVQSKALSEVTNELT 880 (2426)
Q Consensus 803 ~~~~~~--~wl~~~~~~ivraLlfvlkD~p~e~~~~~~~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv 880 (2426)
+...+. .-+.+ ...+..|+..|++- ...+...|--+|..+... . ++. .. ... =..++..|+
T Consensus 153 ~~~~~~~~~~~~~--~ggi~~L~~lL~~~----d~~v~~~A~~aLs~L~~~---~--~~~-~~--~vv---~~g~i~~Lv 215 (296)
T 1xqr_A 153 VREQEAGLLQFLR--LDGFSVLMRAMQQQ----VQKLKVKSAFLLQNLLVG---H--PEH-KG--TLC---SMGMVQQLV 215 (296)
T ss_dssp HTTCHHHHHHHHH--TTHHHHHHHHHHSS----CHHHHHHHHHHHHHHHHH---C--GGG-HH--HHH---HTTHHHHHH
T ss_pred HcCCcHHHHHHHH--CCCHHHHHHHHcCC----CHHHHHHHHHHHHHHHhC---C--hHH-HH--HHH---HcCCHHHHH
Confidence 766533 22222 34677888888763 234455555555555432 1 110 00 011 113566777
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHH
Q psy5930 881 RNITLPNDLLREQSMYLLQVFAET 904 (2426)
Q Consensus 881 ~eL~s~n~~VR~~aq~~L~~lae~ 904 (2426)
.=|.+++..||+.|-.+|..|+..
T Consensus 216 ~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 216 ALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHcCCChhHHHHHHHHHHHHHhC
Confidence 778899999999999999888853
No 94
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=33.59 E-value=1.3e+02 Score=28.87 Aligned_cols=79 Identities=23% Similarity=0.297 Sum_probs=56.4
Q ss_pred cCcHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHhcCccHHHHHHHhhhc----Cc
Q psy5930 2296 QGLWHRVTLSLEKMAVEGLLKQNRMQNRAPSVADCYDFEPDHAPQQQDIIDQLAEMYSALREEDMWFGLWQKNA----KH 2371 (2426)
Q Consensus 2296 ~naW~~ai~~LE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DaL~eLY~~L~E~D~~~GlWrrra----~~ 2371 (2426)
.+-|..|+..+++.... + .+ ....+..++.+|...++.|--...+++-. ..
T Consensus 22 ~~~~~~A~~~~~~~~~~-------------------~--~~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 76 (125)
T 1na0_A 22 QGDYDEAIEYYQKALEL-------------------D--PN----NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 76 (125)
T ss_dssp TTCHHHHHHHHHHHHHH-------------------C--TT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred cCCHHHHHHHHHHHHHH-------------------C--cC----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc
Confidence 37889999999886641 0 00 12345678999999998777666665432 12
Q ss_pred hh--hHHHHHHHHhccHHHHHHHHHHHHHh
Q psy5930 2372 KE--TLYALAYEQQGFYEQALKAYEVTIKK 2399 (2426)
Q Consensus 2372 ~E--T~~ALs~EQ~G~w~~AQ~~YE~a~~k 2399 (2426)
++ .+.|..|.+.|.+++|.+.|+++...
T Consensus 77 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 77 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 22 35688899999999999999998865
No 95
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=31.15 E-value=3e+02 Score=31.75 Aligned_cols=85 Identities=7% Similarity=-0.065 Sum_probs=52.2
Q ss_pred HHHHHHHhhcCCChhhhhHHHHHHHHHHHHHHHhhCCchhhcchhhHHHHHHHHHH-hccCchhhhhHhHHHHHHHHHHh
Q psy5930 727 LIDAIAVILGHEDKELCKPGYIALKCIMETATCITGSIENACNLPLMEYLAERMCN-LCYERAWYAKLGGCYAIKFFYNT 805 (2426)
Q Consensus 727 l~DAi~~~l~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~p~~~~L~~rf~~-~Cy~~~w~~K~gG~~gi~~l~~~ 805 (2426)
.++.++..|.+++..++..+..++..+ |..... +..+.+.+.+ +..++.|..+...+.++..+...
T Consensus 55 ~~~~L~~~l~d~~~~vR~~A~~aL~~l--------~~~~~~-----~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~ 121 (280)
T 1oyz_A 55 AVRLAIEFCSDKNYIRRDIGAFILGQI--------KICKKC-----EDNVFNILNNMALNDKSACVRATAIESTAQRCKK 121 (280)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHS--------CCCTTT-----HHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHh--------cccccc-----chHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcc
Confidence 678899999999999999888887543 321111 1223333332 23467788888888888776543
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCC
Q psy5930 806 MAIKWVYSHMFVFVKALLFVMMDL 829 (2426)
Q Consensus 806 ~~~~wl~~~~~~ivraLlfvlkD~ 829 (2426)
.+ .+..+++..|+..+.|-
T Consensus 122 ~~-----~~~~~~~~~L~~~l~d~ 140 (280)
T 1oyz_A 122 NP-----IYSPKIVEQSQITAFDK 140 (280)
T ss_dssp CG-----GGHHHHHHHHHHHTTCS
T ss_pred CC-----cccHHHHHHHHHHhhCC
Confidence 32 11235566666666653
No 96
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=30.89 E-value=1e+02 Score=39.82 Aligned_cols=89 Identities=15% Similarity=0.077 Sum_probs=61.0
Q ss_pred hhcCcHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHhcCccHHHHHHHh-------
Q psy5930 2294 KAQGLWHRVTLSLEKMAVEGLLKQNRMQNRAPSVADCYDFEPDHAPQQQDIIDQLAEMYSALREEDMWFGLWQ------- 2366 (2426)
Q Consensus 2294 kt~naW~~ai~~LE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DaL~eLY~~L~E~D~~~GlWr------- 2366 (2426)
+..+-|..|+.++|+..... .+ -.. ++-+..-..++.|+.+|..++..|--.-+.+
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~----~~------------~lg-~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~ 382 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQ----EP------------VFA-DTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYM 382 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHH----TT------------TBC-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHH----HH------------hcC-CCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 46678999999998855411 00 011 1123344567899999999998776554443
Q ss_pred hh--cCchhh-----HHHHHHHHhccHHHHHHHHHHHHHh
Q psy5930 2367 KN--AKHKET-----LYALAYEQQGFYEQALKAYEVTIKK 2399 (2426)
Q Consensus 2367 rr--a~~~ET-----~~ALs~EQ~G~w~~AQ~~YE~a~~k 2399 (2426)
+. ...|+| |.|..|..+|.|++|..+|++|..-
T Consensus 383 ~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i 422 (490)
T 3n71_A 383 KLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAI 422 (490)
T ss_dssp HHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 33 344555 5578999999999999999998854
No 97
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=30.69 E-value=1.5e+02 Score=31.41 Aligned_cols=57 Identities=25% Similarity=0.391 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHhcCccHHHHHHHhhhc----Cch--hhHHHHHHHHhccHHHHHHHHHHHHHh
Q psy5930 2343 DIIDQLAEMYSALREEDMWFGLWQKNA----KHK--ETLYALAYEQQGFYEQALKAYEVTIKK 2399 (2426)
Q Consensus 2343 ~~~DaL~eLY~~L~E~D~~~GlWrrra----~~~--ET~~ALs~EQ~G~w~~AQ~~YE~a~~k 2399 (2426)
..+..|+.+|..+++.|-=.-.+++-. ..+ -.+.|..|.+.|.+++|.+.|++|...
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 108 DAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 456679999999998877666666432 222 346789999999999999999999865
No 98
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=30.56 E-value=1.7e+02 Score=29.07 Aligned_cols=91 Identities=7% Similarity=0.048 Sum_probs=62.9
Q ss_pred hHHHHHHhhhc---CcHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHhcCccHHHH
Q psy5930 2286 PAIMTYLGKAQ---GLWHRVTLSLEKMAVEGLLKQNRMQNRAPSVADCYDFEPDHAPQQQDIIDQLAEMYSALREEDMWF 2362 (2426)
Q Consensus 2286 P~LikyLgkt~---naW~~ai~~LE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DaL~eLY~~L~E~D~~~ 2362 (2426)
+.....+|..+ +.|-.|+..++..+.. + +.....+-.++.+|..+++.|-=.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-------------------~------~~~~~~~~~l~~~~~~~~~~~~A~ 63 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITR-------------------N------PLVAVYYTNRALCYLKMQQPEQAL 63 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------C------TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhh-------------------C------cCcHHHHHHHHHHHHHhcCHHHHH
Confidence 44555555443 7899999999886541 0 011235567899999999877665
Q ss_pred HHHhhhc-Cch-----hhHHHHHHHHhccHHHHHHHHHHHHHhhh
Q psy5930 2363 GLWQKNA-KHK-----ETLYALAYEQQGFYEQALKAYEVTIKKGL 2401 (2426)
Q Consensus 2363 GlWrrra-~~~-----ET~~ALs~EQ~G~w~~AQ~~YE~a~~k~~ 2401 (2426)
-.+++-. ..| -.+.|..|.+.|.|++|.+.|+++.....
T Consensus 64 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 64 ADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHCh
Confidence 5555432 122 34678899999999999999999987743
No 99
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=30.46 E-value=83 Score=29.73 Aligned_cols=80 Identities=14% Similarity=-0.023 Sum_probs=57.8
Q ss_pred hcCcHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHhcCccHHHHHHHhhhc-Cchh
Q psy5930 2295 AQGLWHRVTLSLEKMAVEGLLKQNRMQNRAPSVADCYDFEPDHAPQQQDIIDQLAEMYSALREEDMWFGLWQKNA-KHKE 2373 (2426)
Q Consensus 2295 t~naW~~ai~~LE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DaL~eLY~~L~E~D~~~GlWrrra-~~~E 2373 (2426)
.-+.|..|+..+++.... + +.....+-.++.+|..+++.|--...+++-. ..++
T Consensus 18 ~~~~~~~A~~~~~~a~~~-------------------~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 72 (112)
T 2kck_A 18 DAGNYTESIDLFEKAIQL-------------------D------PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED 72 (112)
T ss_dssp SSCCHHHHHHHHHHHHHH-------------------C------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred HhhhHHHHHHHHHHHHHh-------------------C------cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 347899999999886541 0 0112345578999999999887777777542 2222
Q ss_pred -------hHHHHHHHHh-ccHHHHHHHHHHHHHh
Q psy5930 2374 -------TLYALAYEQQ-GFYEQALKAYEVTIKK 2399 (2426)
Q Consensus 2374 -------T~~ALs~EQ~-G~w~~AQ~~YE~a~~k 2399 (2426)
.+.|..|.+. |.+++|.+.|+.+...
T Consensus 73 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 73 EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 3568899999 9999999999988755
No 100
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=29.62 E-value=77 Score=30.78 Aligned_cols=58 Identities=14% Similarity=0.047 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHhcCccHHHHHHHhhh----cCch--hhHHHHHHHHhccHHHHHHHHHHHHHhh
Q psy5930 2343 DIIDQLAEMYSALREEDMWFGLWQKN----AKHK--ETLYALAYEQQGFYEQALKAYEVTIKKG 2400 (2426)
Q Consensus 2343 ~~~DaL~eLY~~L~E~D~~~GlWrrr----a~~~--ET~~ALs~EQ~G~w~~AQ~~YE~a~~k~ 2400 (2426)
..+-.|+.+|..+++.|--.-.+++- -.++ -.+.|..|.+.|.|++|.+.|++|..-.
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 34557899999999888766666643 2222 3567899999999999999999998664
No 101
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.49 E-value=1.6e+02 Score=29.53 Aligned_cols=91 Identities=13% Similarity=-0.018 Sum_probs=62.5
Q ss_pred HHHHHHhhhc---CcHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHhcCccHHHHH
Q psy5930 2287 AIMTYLGKAQ---GLWHRVTLSLEKMAVEGLLKQNRMQNRAPSVADCYDFEPDHAPQQQDIIDQLAEMYSALREEDMWFG 2363 (2426)
Q Consensus 2287 ~LikyLgkt~---naW~~ai~~LE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DaL~eLY~~L~E~D~~~G 2363 (2426)
.....+|..+ +-|..|+..+++.... . .+ .......+-.++..|..+++.|--..
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----------~----------~~-~~~~~~~~~~~a~~~~~~~~~~~A~~ 86 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGL-----------D----------AT-PQDQAVLHRNRAACHLKLEDYDKAET 86 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTS-----------C----------CC-HHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----------c----------cc-chHHHHHHHHHHHHHHHHccHHHHHH
Confidence 4444455443 7899999999886541 0 00 11123456678999999998887766
Q ss_pred HHhhhc----Cch--hhHHHHHHHHhccHHHHHHHHHHHHHh
Q psy5930 2364 LWQKNA----KHK--ETLYALAYEQQGFYEQALKAYEVTIKK 2399 (2426)
Q Consensus 2364 lWrrra----~~~--ET~~ALs~EQ~G~w~~AQ~~YE~a~~k 2399 (2426)
.+++-. ..+ -.+.|..|.+.|.|++|.+.|+++...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 87 EASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 666532 122 245688999999999999999999866
No 102
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=27.90 E-value=3.5e+02 Score=29.68 Aligned_cols=106 Identities=9% Similarity=0.061 Sum_probs=71.5
Q ss_pred ChHHHHHHHhhhcCCCCCCChHHHHHHhhhc---CcHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCcchhh
Q psy5930 2266 SSINTIYESLAHCNPPLPIKPAIMTYLGKAQ---GLWHRVTLSLEKMAVEGLLKQNRMQNRAPSVADCYDFEPDHAPQQQ 2342 (2426)
Q Consensus 2266 nviqtlLegi~~c~p~i~lPP~LikyLgkt~---naW~~ai~~LE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2342 (2426)
.++..+-.++....+ -.+...-++|..+ +-|-.|+..++..... .+...
T Consensus 25 ~A~~~~~~al~~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-------------------------~p~~~ 76 (228)
T 4i17_A 25 VAFEKYSEYLKLTNN---QDSVTAYNCGVCADNIKKYKEAADYFDIAIKK-------------------------NYNLA 76 (228)
T ss_dssp HHHHHHHHHHHHTTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-------------------------TCSHH
T ss_pred HHHHHHHHHHhccCC---CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh-------------------------CcchH
Confidence 356666666655431 1234555566655 7888999999876541 11123
Q ss_pred hHHHHHHHHHHhcCccHHHHHHHhhhc-Cch------------hhHHHHHHHHhccHHHHHHHHHHHHHh
Q psy5930 2343 DIIDQLAEMYSALREEDMWFGLWQKNA-KHK------------ETLYALAYEQQGFYEQALKAYEVTIKK 2399 (2426)
Q Consensus 2343 ~~~DaL~eLY~~L~E~D~~~GlWrrra-~~~------------ET~~ALs~EQ~G~w~~AQ~~YE~a~~k 2399 (2426)
..+-.|+.+|..+++.|--...+++-. ..| -.+.|..+.+.|.|++|.+.|++|...
T Consensus 77 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 77 NAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 456679999999998887777666542 122 355688999999999999999988754
No 103
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=27.46 E-value=1.4e+02 Score=29.22 Aligned_cols=58 Identities=14% Similarity=0.043 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHhcCccHHHHHHHhhhc----Cch--hhHHHHHHHHhccHHHHHHHHHHHHHhh
Q psy5930 2343 DIIDQLAEMYSALREEDMWFGLWQKNA----KHK--ETLYALAYEQQGFYEQALKAYEVTIKKG 2400 (2426)
Q Consensus 2343 ~~~DaL~eLY~~L~E~D~~~GlWrrra----~~~--ET~~ALs~EQ~G~w~~AQ~~YE~a~~k~ 2400 (2426)
..+-.|+.+|..+++.|--...+++-. .+. -.+.|..|.+.|.+++|.+.|+++....
T Consensus 20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 83 (115)
T 2kat_A 20 LLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83 (115)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 456679999999999888777777542 222 2356889999999999999999998763
No 104
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=27.45 E-value=1.9e+02 Score=32.40 Aligned_cols=88 Identities=10% Similarity=0.053 Sum_probs=55.6
Q ss_pred HHHHHHhhhc---CcHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHhcCccHHHHH
Q psy5930 2287 AIMTYLGKAQ---GLWHRVTLSLEKMAVEGLLKQNRMQNRAPSVADCYDFEPDHAPQQQDIIDQLAEMYSALREEDMWFG 2363 (2426)
Q Consensus 2287 ~LikyLgkt~---naW~~ai~~LE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DaL~eLY~~L~E~D~~~G 2363 (2426)
.....+|..| +-|..|+..+++.... + +.....+-.|+.+|..+++.|--..
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------------------~------~~~~~~~~~la~~~~~~~~~~~A~~ 98 (275)
T 1xnf_A 44 QLLYERGVLYDSLGLRALARNDFSQALAI-------------------R------PDMPEVFNYLGIYLTQAGNFDAAYE 98 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------C------CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHc-------------------C------CCcHHHHHHHHHHHHHccCHHHHHH
Confidence 4455555544 7788888888776541 0 0112345567888888887777666
Q ss_pred HHhhhcC-c-----hhhHHHHHHHHhccHHHHHHHHHHHHHh
Q psy5930 2364 LWQKNAK-H-----KETLYALAYEQQGFYEQALKAYEVTIKK 2399 (2426)
Q Consensus 2364 lWrrra~-~-----~ET~~ALs~EQ~G~w~~AQ~~YE~a~~k 2399 (2426)
.+++-.. . .-.+.|..|.+.|.+++|.+.|+++...
T Consensus 99 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 140 (275)
T 1xnf_A 99 AFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD 140 (275)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 6664421 1 1244567788888888888888877654
No 105
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=26.51 E-value=2.3e+02 Score=29.17 Aligned_cols=55 Identities=16% Similarity=0.256 Sum_probs=28.3
Q ss_pred HHHHHHHHHhcCccHHHHHHHhhhc----Cch--hhHHHHHHHHhccHHHHHHHHHHHHHh
Q psy5930 2345 IDQLAEMYSALREEDMWFGLWQKNA----KHK--ETLYALAYEQQGFYEQALKAYEVTIKK 2399 (2426)
Q Consensus 2345 ~DaL~eLY~~L~E~D~~~GlWrrra----~~~--ET~~ALs~EQ~G~w~~AQ~~YE~a~~k 2399 (2426)
+-.++.+|...++.|.-...+++-. ..+ -...|..|.+.|.|++|.+.|+++...
T Consensus 79 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 139 (186)
T 3as5_A 79 ATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL 139 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc
Confidence 3445666666665555444444321 111 223455666666666666666666544
No 106
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=26.44 E-value=4.1e+02 Score=29.30 Aligned_cols=53 Identities=11% Similarity=0.087 Sum_probs=25.1
Q ss_pred HHHHHHHHHhcCccHHHHHHHhhhc----Cchh--hHHHHHHHHhccHHHHHHHHHHHH
Q psy5930 2345 IDQLAEMYSALREEDMWFGLWQKNA----KHKE--TLYALAYEQQGFYEQALKAYEVTI 2397 (2426)
Q Consensus 2345 ~DaL~eLY~~L~E~D~~~GlWrrra----~~~E--T~~ALs~EQ~G~w~~AQ~~YE~a~ 2397 (2426)
+-.++.+|..+++.|--...+++-. ..++ ...|..|.+.|.+++|.+.|+++.
T Consensus 144 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 202 (252)
T 2ho1_A 144 FENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFA 202 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555555555554444444321 1121 223445555566666666655554
No 107
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=25.63 E-value=3.1e+02 Score=31.47 Aligned_cols=25 Identities=12% Similarity=0.024 Sum_probs=13.3
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Q psy5930 2375 LYALAYEQQGFYEQALKAYEVTIKK 2399 (2426)
Q Consensus 2375 ~~ALs~EQ~G~w~~AQ~~YE~a~~k 2399 (2426)
+.|..|.+.|.|++|.+.|+++...
T Consensus 241 ~la~~~~~~g~~~~A~~~~~~a~~~ 265 (330)
T 3hym_B 241 NLGHVCRKLKKYAEALDYHRQALVL 265 (330)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 4455555555555555555555443
No 108
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=24.75 E-value=3.4e+02 Score=35.68 Aligned_cols=32 Identities=16% Similarity=0.445 Sum_probs=28.8
Q ss_pred HHHHHHHhccCchhhhhHhHHHHHHHHHHhch
Q psy5930 776 LAERMCNLCYERAWYAKLGGCYAIKFFYNTMA 807 (2426)
Q Consensus 776 L~~rf~~~Cy~~~w~~K~gG~~gi~~l~~~~~ 807 (2426)
+++.++.--+++.|..+-|+++|+.-++..-+
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG 206 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEID 206 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhc
Confidence 88899999999999999999999988887653
No 109
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=24.10 E-value=3.5e+02 Score=30.98 Aligned_cols=91 Identities=12% Similarity=0.134 Sum_probs=63.6
Q ss_pred ChHHHHHHhhhc---CcHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHhcCccHHH
Q psy5930 2285 KPAIMTYLGKAQ---GLWHRVTLSLEKMAVEGLLKQNRMQNRAPSVADCYDFEPDHAPQQQDIIDQLAEMYSALREEDMW 2361 (2426)
Q Consensus 2285 PP~LikyLgkt~---naW~~ai~~LE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DaL~eLY~~L~E~D~~ 2361 (2426)
.+.....+|..| +-|..|+..++..... + +.....+-.++.+|..+++.|--
T Consensus 171 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------------------~------~~~~~~~~~l~~~~~~~~~~~~A 225 (327)
T 3cv0_A 171 DAQLHASLGVLYNLSNNYDSAAANLRRAVEL-------------------R------PDDAQLWNKLGATLANGNRPQEA 225 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------C------TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-------------------C------CCcHHHHHHHHHHHHHcCCHHHH
Confidence 345556666554 7788999999886541 0 11123566789999999988877
Q ss_pred HHHHhhhc----Cch--hhHHHHHHHHhccHHHHHHHHHHHHHhh
Q psy5930 2362 FGLWQKNA----KHK--ETLYALAYEQQGFYEQALKAYEVTIKKG 2400 (2426)
Q Consensus 2362 ~GlWrrra----~~~--ET~~ALs~EQ~G~w~~AQ~~YE~a~~k~ 2400 (2426)
...+++-. ..+ -.+.|..|.+.|.|++|.+.|+++....
T Consensus 226 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 270 (327)
T 3cv0_A 226 LDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ 270 (327)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 66666531 122 3456889999999999999999998763
No 110
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=23.93 E-value=3.5e+02 Score=31.79 Aligned_cols=91 Identities=9% Similarity=0.118 Sum_probs=64.7
Q ss_pred ChHHHHHHhhhc---CcHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHhcCccHHH
Q psy5930 2285 KPAIMTYLGKAQ---GLWHRVTLSLEKMAVEGLLKQNRMQNRAPSVADCYDFEPDHAPQQQDIIDQLAEMYSALREEDMW 2361 (2426)
Q Consensus 2285 PP~LikyLgkt~---naW~~ai~~LE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DaL~eLY~~L~E~D~~ 2361 (2426)
.+.+...+|..| +-|..|+..++..... + +.....+-.|+.+|..+++.|--
T Consensus 216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------------------~------~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSV-------------------R------PNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------C------TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------C------cCCHHHHHHHHHHHHHcCCHHHH
Confidence 345555555544 7799999999886541 0 11123566799999999998887
Q ss_pred HHHHhhhc----Cc--hhhHHHHHHHHhccHHHHHHHHHHHHHhh
Q psy5930 2362 FGLWQKNA----KH--KETLYALAYEQQGFYEQALKAYEVTIKKG 2400 (2426)
Q Consensus 2362 ~GlWrrra----~~--~ET~~ALs~EQ~G~w~~AQ~~YE~a~~k~ 2400 (2426)
...+++-. .. .-.+.|..|.+.|.|++|.+.|+++....
T Consensus 271 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 315 (368)
T 1fch_A 271 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ 315 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 77777532 11 23456889999999999999999998764
No 111
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=23.82 E-value=1.8e+02 Score=32.36 Aligned_cols=57 Identities=19% Similarity=0.201 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHhcCccHHHHHHHhhhc---Cch--hhHHHHHHHHhccHHHHHHHHHHHHHh
Q psy5930 2343 DIIDQLAEMYSALREEDMWFGLWQKNA---KHK--ETLYALAYEQQGFYEQALKAYEVTIKK 2399 (2426)
Q Consensus 2343 ~~~DaL~eLY~~L~E~D~~~GlWrrra---~~~--ET~~ALs~EQ~G~w~~AQ~~YE~a~~k 2399 (2426)
..+-.|+.+|..+++.|-=...+++-. ..+ -.+.|..|.+.|.+++|...|+++...
T Consensus 119 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 180 (217)
T 2pl2_A 119 PLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQ 180 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 355679999999999887777776532 222 346788999999999999999999865
No 112
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=23.71 E-value=1.3e+03 Score=29.78 Aligned_cols=198 Identities=12% Similarity=0.188 Sum_probs=120.8
Q ss_pred CCccc-cCcchhhHHHHHHHHHHhhccCchhhhcCCCCCCccccchHHHHHHHHHHhhhcCCchhhHHHHHHHHhhcCCC
Q psy5930 954 PRLFT-TDMSIHEHSSFFQEITNICESSDQALMKLPCYKPISSLVPLRKAAMRALASWHYVPNCSQKIFNTLFAALERPN 1032 (2426)
Q Consensus 954 p~~l~-~~~~~~el~rll~E~l~LadadD~~l~k~~~~k~~~~lv~LRv~ci~lL~~~~~~~~~~~rIi~vfFKsL~s~s 1032 (2426)
|.||. |. +--.+-+.-.+.|||.||.. .|+.+||.|..-... ++-.||..|+-+-|.+..
T Consensus 53 ~kffk~FP---~l~~~Ai~a~lDLcEDed~~---------------IR~qaik~Lp~~ck~-~~i~kiaDvL~QlLqtdd 113 (507)
T 3u0r_A 53 PKFFKHFP---ELADSAINAQLDLCEDEDVS---------------IRRQAIKELPQFATG-ENLPRVADILTQLLQTDD 113 (507)
T ss_dssp HHHGGGCG---GGHHHHHHHHHHHHTCSSHH---------------HHHHHHHHGGGGCCT-TCHHHHHHHHHHHTTCCC
T ss_pred HHHHhhCh---hhHHHHHHHHHHHHhcccHH---------------HHHHHHHhhHHHhhh-hhhhhHHHHHHHHHhccc
Confidence 45555 44 22244666778999999987 588999988766666 778899999999999999
Q ss_pred HHHHHHHHHHHHHHHccCCCChhhHHHh-hHHHHhhhcCCCCCCHhHHHHH-HHhhhhCCCcccHHHHHHHHHHHHHhhh
Q psy5930 1033 PELQEAAFQAMKTFVNGSPIDLKSVYEV-MKPLLLTLGDYRNLNLVTARKL-SYIVQPFPSSFSEKLCEQLLVNLKNLFE 1110 (2426)
Q Consensus 1033 ~ei~~aA~~gLk~vL~~~~~~~e~L~q~-LRPiL~nLsD~k~Ltv~gLegL-arLLeLL~nyFkveiG~KLLdHLk~~~e 1110 (2426)
+.=.++.+.+|.+.+.+. |+--+.+ ..-|.. +|. ...--.|.=| .++-.|=.+..+.|.=+=+.+.+++.++
T Consensus 114 ~~E~~~V~~sL~sllk~D---pk~tl~~lf~~i~~--~~e-~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~ 187 (507)
T 3u0r_A 114 SAEFNLVNNALLSIFKMD---AKGTLGGLFSQILQ--GED-IVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLE 187 (507)
T ss_dssp HHHHHHHHHHHHHHHHHC---HHHHHHHHHHHHHH--SCH-HHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHhcC---hHHHHHHHHHHHcc--cch-HHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhc
Confidence 999999999999888653 3333333 222222 221 0000011111 1233445677789998888999988886
Q ss_pred hhhhhh-------------cCCCC-CCcchhHHHHHHHhhccCchhHHhhHHHHHHHHHHHHHhcCCCCCCCCcchHHHH
Q psy5930 1111 NIVAQK-------------ENPPK-NSETEKIIVVIIGIFKESPAAKAQFIEPLISLILENEHALSIGPYSPYREPLVKY 1176 (2426)
Q Consensus 1111 ~~~~~~-------------~~~~~-~~~~~kii~aIinIFHLLP~aa~~Fle~Lv~~Vl~lE~~L~~~~~SPfR~PL~kf 1176 (2426)
.....- .+... .++-++++....++=.-+++....-++.++.++-+. |+.-....=...+..|
T Consensus 188 DVT~~EF~L~m~lL~~lkl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~A---LP~FS~~v~StkFv~y 264 (507)
T 3u0r_A 188 DVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQA---VPLFSKNVHSTRFVTY 264 (507)
T ss_dssp SCCHHHHHHHHHHHHTSGGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHH---GGGCBTTBCCHHHHHH
T ss_pred cccHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHH---HHHhccCCChHHHHHH
Confidence 432211 11111 112235555555555667777788888888876554 5533222224455555
Q ss_pred Hhh
Q psy5930 1177 LLR 1179 (2426)
Q Consensus 1177 LnR 1179 (2426)
+++
T Consensus 265 ~~~ 267 (507)
T 3u0r_A 265 FCE 267 (507)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 113
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=23.68 E-value=2.7e+02 Score=28.33 Aligned_cols=79 Identities=14% Similarity=0.053 Sum_probs=49.3
Q ss_pred cCcHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHhcCccHHHHHHHhhhc-Cch--
Q psy5930 2296 QGLWHRVTLSLEKMAVEGLLKQNRMQNRAPSVADCYDFEPDHAPQQQDIIDQLAEMYSALREEDMWFGLWQKNA-KHK-- 2372 (2426)
Q Consensus 2296 ~naW~~ai~~LE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DaL~eLY~~L~E~D~~~GlWrrra-~~~-- 2372 (2426)
-+.|..|+..+++.... + +.....+-.++.+|..+++.+--...+++-. ..+
T Consensus 26 ~~~~~~A~~~~~~al~~-------------------~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~ 80 (166)
T 1a17_A 26 AKDYENAIKFYSQAIEL-------------------N------PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY 80 (166)
T ss_dssp TTCHHHHHHHHHHHHHH-------------------S------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred ccCHHHHHHHHHHHHHh-------------------C------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 36788888888875541 0 0012344467777877777776665555431 112
Q ss_pred ---hhHHHHHHHHhccHHHHHHHHHHHHHh
Q psy5930 2373 ---ETLYALAYEQQGFYEQALKAYEVTIKK 2399 (2426)
Q Consensus 2373 ---ET~~ALs~EQ~G~w~~AQ~~YE~a~~k 2399 (2426)
--+.|..|.+.|.+++|.+.|+++...
T Consensus 81 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 81 IKGYYRRAASNMALGKFRAALRDYETVVKV 110 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 234467788888888888888877755
No 114
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=23.65 E-value=4.8e+02 Score=26.63 Aligned_cols=89 Identities=20% Similarity=0.160 Sum_probs=60.9
Q ss_pred hHHHHHHhhhc---CcHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHhcCccHHHH
Q psy5930 2286 PAIMTYLGKAQ---GLWHRVTLSLEKMAVEGLLKQNRMQNRAPSVADCYDFEPDHAPQQQDIIDQLAEMYSALREEDMWF 2362 (2426)
Q Consensus 2286 P~LikyLgkt~---naW~~ai~~LE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DaL~eLY~~L~E~D~~~ 2362 (2426)
+.....+|..+ +-|..|+..+++.... . +.....+-.++.+|..+++.|--.
T Consensus 76 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----------~--------------~~~~~~~~~~a~~~~~~~~~~~A~ 130 (186)
T 3as5_A 76 VKVATVLGLTYVQVQKYDLAVPLLIKVAEA-----------N--------------PINFNVRFRLGVALDNLGRFDEAI 130 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------C--------------TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----------C--------------cHhHHHHHHHHHHHHHcCcHHHHH
Confidence 34444455443 7888899988876541 0 001234567899999999888766
Q ss_pred HHHhhhc-C---ch--hhHHHHHHHHhccHHHHHHHHHHHHHh
Q psy5930 2363 GLWQKNA-K---HK--ETLYALAYEQQGFYEQALKAYEVTIKK 2399 (2426)
Q Consensus 2363 GlWrrra-~---~~--ET~~ALs~EQ~G~w~~AQ~~YE~a~~k 2399 (2426)
..+++-. . .+ -...|..|...|.+++|.+.|+++...
T Consensus 131 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 131 DSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 6666532 1 12 244678999999999999999998866
No 115
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=22.69 E-value=2.5e+02 Score=30.76 Aligned_cols=22 Identities=14% Similarity=0.469 Sum_probs=11.2
Q ss_pred HHHHHHhccHHHHHHHHHHHHH
Q psy5930 2377 ALAYEQQGFYEQALKAYEVTIK 2398 (2426)
Q Consensus 2377 ALs~EQ~G~w~~AQ~~YE~a~~ 2398 (2426)
|..|.+.|.|++|.+.|+++..
T Consensus 166 ~~~~~~~~~~~~A~~~~~~~~~ 187 (243)
T 2q7f_A 166 GMCLANEGMLDEALSQFAAVTE 187 (243)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 4445555555555555555443
No 116
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=22.65 E-value=9.2e+02 Score=29.33 Aligned_cols=123 Identities=15% Similarity=0.218 Sum_probs=67.9
Q ss_pred HHHHHHHhhhccccCCCC-CCcchHHHHHHHHHHHhhhCchhhhHhhHHHHHHHHHHHHHhhccCCCCCCccchHHHHHH
Q psy5930 1854 CVSKVIYEGLSNYEKNPT-ATCSTLYGTVMMLKAACMNHPAYVDRFILEFMRVIQRMAREHIATSTADAPQQVGGELLIY 1932 (2426)
Q Consensus 1854 ~l~~~i~e~L~~~~~~~~-~~~~~~~~~l~lL~~~~~~~p~~iD~~l~~lmk~l~kl~keHl~~~~~~~~~~~~~~ll~~ 1932 (2426)
++...+.--|.+|.++.+ +--. ..|+++-+++..-.+.+.+.+|.++... -.-
T Consensus 70 ~ippLl~~VL~DY~~~vp~aRep---eVL~l~~tii~kl~~~i~~~vp~Il~~V-----------------------Fe~ 123 (321)
T 1w9c_A 70 FVPPLLDAVLIDYQRNVPAAREP---EVLSTMAIIVNKLGGHITAEIPQIFDAV-----------------------FEC 123 (321)
T ss_dssp THHHHHHHHHHHHHTSCGGGCCT---HHHHHHHHHHHHHGGGGGGGHHHHHHHH-----------------------HHH
T ss_pred HHHHHHHHHHHHHHhCCcccccH---HHHHHHHHHHHHHHHHhhhhHHHHHHHH-----------------------HHH
Confidence 344444444556665522 2222 3477777777777777777777665544 445
Q ss_pred HHHHHhHhhhcCCHHHHHHHHHHHHHHHhccCCC------HHHHHHHHHHHHHHhhccccCCCCCCChhHHHH-HHHHHH
Q psy5930 1933 CLDLVKTRFCSMSQETRKQFIGTIILGLIDKTPD------IKVMKAIIKMTEEWLKVNKVEQNNVPNLKEKCI-ILVKLM 2005 (2426)
Q Consensus 1933 ~leLl~~Rv~~lg~d~Rr~fls~l~~~LiekS~d------~~ll~~Il~iv~~Wv~~~~~~~~~~PtlKEKa~-lL~KM~ 2005 (2426)
.+++++.-...-+ |+|..|...+-. ++..+-+ ++-++.+++-+- |-+. ++-+.+-|... +|..|+
T Consensus 124 TL~MI~~df~eyP-ehR~~Ff~LL~a-i~~~cF~al~~lp~~~fklvidsii-Wa~k-----H~~r~V~e~gL~il~~ll 195 (321)
T 1w9c_A 124 TLNMINKDFEEYP-EHRTNFFLLLQA-VNSHCFPAFLAIPPTQFKLVLDSII-WAFK-----HTMRNVADTGLQILFTLL 195 (321)
T ss_dssp HHHHHSSTTTCSH-HHHHHHHHHHHH-HHHHCTTHHHHSCHHHHHHHHHHHH-HHTT-----CSSHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccccCh-HHHHHHHHHHHH-HHHHhHHHHHcCCHHHHHHHHHHHH-HHcC-----CCCchHHHHHHHHHHHHH
Confidence 5666665555555 777777764433 5554433 344566666555 7653 23344455543 455555
Q ss_pred HHHhh
Q psy5930 2006 HFVEK 2010 (2426)
Q Consensus 2006 ~fe~r 2010 (2426)
....+
T Consensus 196 ~n~~~ 200 (321)
T 1w9c_A 196 QNVAQ 200 (321)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 55544
No 117
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=22.57 E-value=3.4e+02 Score=33.07 Aligned_cols=89 Identities=13% Similarity=-0.062 Sum_probs=58.9
Q ss_pred hHHHHHHhhhc---CcHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHhcCccHHHH
Q psy5930 2286 PAIMTYLGKAQ---GLWHRVTLSLEKMAVEGLLKQNRMQNRAPSVADCYDFEPDHAPQQQDIIDQLAEMYSALREEDMWF 2362 (2426)
Q Consensus 2286 P~LikyLgkt~---naW~~ai~~LE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DaL~eLY~~L~E~D~~~ 2362 (2426)
+...-.+|..| +.|..|+..+++.... + +.....+-.|+.+|..++..|--.
T Consensus 60 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------------------~------p~~~~~~~~l~~~~~~~g~~~~A~ 114 (450)
T 2y4t_A 60 YIAYYRRATVFLAMGKSKAALPDLTKVIQL-------------------K------MDFTAARLQRGHLLLKQGKLDEAE 114 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------C------TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------------------C------CCcHHHHHHHHHHHHHcCCHHHHH
Confidence 44445555444 6788888888886651 0 011234557888888888776666
Q ss_pred HHHhhhcC-ch--------------------hhHHHHHHHHhccHHHHHHHHHHHHHh
Q psy5930 2363 GLWQKNAK-HK--------------------ETLYALAYEQQGFYEQALKAYEVTIKK 2399 (2426)
Q Consensus 2363 GlWrrra~-~~--------------------ET~~ALs~EQ~G~w~~AQ~~YE~a~~k 2399 (2426)
..+++-.. .| ....|..|.+.|.|++|.+.|+++...
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 172 (450)
T 2y4t_A 115 DDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV 172 (450)
T ss_dssp HHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 65554422 22 223477899999999999999998765
No 118
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=22.56 E-value=2.5e+02 Score=31.92 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=22.3
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Q psy5930 2375 LYALAYEQQGFYEQALKAYEVTIKK 2399 (2426)
Q Consensus 2375 ~~ALs~EQ~G~w~~AQ~~YE~a~~k 2399 (2426)
+.|..|.+.|.|++|.+.|++|..-
T Consensus 283 ~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 283 NLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999865
No 119
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=22.26 E-value=2.7e+02 Score=29.41 Aligned_cols=89 Identities=25% Similarity=0.244 Sum_probs=59.1
Q ss_pred hHHHHHHhhhc---CcHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHhcCccHHHH
Q psy5930 2286 PAIMTYLGKAQ---GLWHRVTLSLEKMAVEGLLKQNRMQNRAPSVADCYDFEPDHAPQQQDIIDQLAEMYSALREEDMWF 2362 (2426)
Q Consensus 2286 P~LikyLgkt~---naW~~ai~~LE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DaL~eLY~~L~E~D~~~ 2362 (2426)
+.....+|..| +-|..|+..++..... + +.....+..++.+|...++.+.-.
T Consensus 39 ~~~~~~la~~~~~~~~~~~a~~~~~~~~~~-------------------~------~~~~~~~~~~~~~~~~~~~~~~a~ 93 (184)
T 3vtx_A 39 VETLLKLGKTYMDIGLPNDAIESLKKFVVL-------------------D------TTSAEAYYILGSANFMIDEKQAAI 93 (184)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------C------CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------------------C------chhHHHHHHHHHHHHHcCCHHHHH
Confidence 34445555543 6788888888775541 0 111234556788888888777766
Q ss_pred HHHhhhc----Cch--hhHHHHHHHHhccHHHHHHHHHHHHHh
Q psy5930 2363 GLWQKNA----KHK--ETLYALAYEQQGFYEQALKAYEVTIKK 2399 (2426)
Q Consensus 2363 GlWrrra----~~~--ET~~ALs~EQ~G~w~~AQ~~YE~a~~k 2399 (2426)
-.+++-. ... -...|..|.+.|.|++|.+.|+++...
T Consensus 94 ~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~ 136 (184)
T 3vtx_A 94 DALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI 136 (184)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh
Confidence 6665432 112 345688999999999999999998865
No 120
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=22.04 E-value=2.2e+02 Score=35.97 Aligned_cols=88 Identities=15% Similarity=0.079 Sum_probs=58.4
Q ss_pred cCcHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHhcCccHHHHHHHh-------hh
Q psy5930 2296 QGLWHRVTLSLEKMAVEGLLKQNRMQNRAPSVADCYDFEPDHAPQQQDIIDQLAEMYSALREEDMWFGLWQ-------KN 2368 (2426)
Q Consensus 2296 ~naW~~ai~~LE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DaL~eLY~~L~E~D~~~GlWr-------rr 2368 (2426)
.+-|..|+.+.|+.... ... .--.+-+..-..++.|+.+|..++..|--..+.+ +.
T Consensus 300 ~g~~~~a~~~~~~~L~~-----------~~~------~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~ 362 (429)
T 3qwp_A 300 HWKWEQVLAMCQAIISS-----------NSE------RLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIF 362 (429)
T ss_dssp TTCHHHHHHHHHHHHTC-----------SSC------CCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHh-----------ccC------cCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHH
Confidence 34788899888876531 000 0111223345568899999999988774443333 32
Q ss_pred --cCchhh-----HHHHHHHHhccHHHHHHHHHHHHHhh
Q psy5930 2369 --AKHKET-----LYALAYEQQGFYEQALKAYEVTIKKG 2400 (2426)
Q Consensus 2369 --a~~~ET-----~~ALs~EQ~G~w~~AQ~~YE~a~~k~ 2400 (2426)
...|+| |.|..|-.+|.|++|..+|++|..=.
T Consensus 363 lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~ 401 (429)
T 3qwp_A 363 FPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIM 401 (429)
T ss_dssp SCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 345555 55789999999999999999988643
No 121
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=21.65 E-value=4e+02 Score=33.50 Aligned_cols=110 Identities=16% Similarity=0.165 Sum_probs=68.0
Q ss_pred HHHHHHHHHhcCChhHHHHhhHHHHHHHHHHHhcCchhHHHHHHHHH--HHHHhcCCCCCCCCCccCchhhHHHHHHHHH
Q psy5930 1779 ALELLTLLITILDEGQILHIIKPLQRGLVACISSSITKVIRLVHALL--CRLMSTFPTEPISSNVASKREELDHLYVCVS 1856 (2426)
Q Consensus 1779 aLevL~il~~~~~~~~il~nl~~lq~lL~kcl~~~n~~i~~~l~~ll--~rll~~~p~~~~~~~~~~~~~e~~~f~~~l~ 1856 (2426)
-|.-+..++...+++.+...+.++-+.|.+|+.|.|..|-+..-.+. ..++..+. +-...++..+-
T Consensus 271 FL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~------------~n~~~IlPii~ 338 (403)
T 3fga_B 271 FLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLIS------------DNAAKILPIMF 338 (403)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHH------------TTHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHH------------HhHHHHHHHHH
Confidence 35666777788899999999999999999999999988876542222 22222211 01123333333
Q ss_pred HHHHhhhccccCCCCCCcchHHHHHHHHHHHhhhCchhhhHhhHHHHHH
Q psy5930 1857 KVIYEGLSNYEKNPTATCSTLYGTVMMLKAACMNHPAYVDRFILEFMRV 1905 (2426)
Q Consensus 1857 ~~i~e~L~~~~~~~~~~~~~~~~~l~lL~~~~~~~p~~iD~~l~~lmk~ 1905 (2426)
..+.+...+.= + .+.-.-+.+.++.+...+|...|.+.......
T Consensus 339 p~L~~~~~~HW---n--~~v~~l~~~vlk~l~e~d~~lF~~~~~~~~~~ 382 (403)
T 3fga_B 339 PSLYRNSKTHW---N--KTIHGLIYNALKLFMEMNQKLFDDCTQQFKAE 382 (403)
T ss_dssp HHHHHTTSCCS---C--HHHHHHHHHHHHHHHTTSCCCCCTTHHHHHHH
T ss_pred HHHHHHHHHcc---C--HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 33333222210 1 12222468999999999999999887655443
No 122
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=21.52 E-value=3e+02 Score=32.08 Aligned_cols=88 Identities=7% Similarity=0.059 Sum_probs=61.7
Q ss_pred HHHHHhhh---cCcHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHhcCccHHHHHH
Q psy5930 2288 IMTYLGKA---QGLWHRVTLSLEKMAVEGLLKQNRMQNRAPSVADCYDFEPDHAPQQQDIIDQLAEMYSALREEDMWFGL 2364 (2426)
Q Consensus 2288 LikyLgkt---~naW~~ai~~LE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DaL~eLY~~L~E~D~~~Gl 2364 (2426)
....+|.. -+-|-.|+..++..+.. + +.....+-.++.+|..+++.|--...
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~-------------------~------p~~~~~~~~la~~~~~~~~~~~A~~~ 60 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITR-------------------N------PLVAVYYTNRALCYLKMQQPEQALAD 60 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------C------SCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------C------CccHHHHHHHHHHHHHhcCHHHHHHH
Confidence 33444443 37788999999886651 1 11123566799999999988877777
Q ss_pred Hhhhc-Cch-----hhHHHHHHHHhccHHHHHHHHHHHHHhh
Q psy5930 2365 WQKNA-KHK-----ETLYALAYEQQGFYEQALKAYEVTIKKG 2400 (2426)
Q Consensus 2365 Wrrra-~~~-----ET~~ALs~EQ~G~w~~AQ~~YE~a~~k~ 2400 (2426)
.++-. ..| -.+.|.+|.+.|.|++|.+.|++|....
T Consensus 61 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 102 (281)
T 2c2l_A 61 CRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLA 102 (281)
T ss_dssp HHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 66542 222 2356889999999999999999988763
No 123
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=21.36 E-value=1.6e+02 Score=26.77 Aligned_cols=56 Identities=21% Similarity=0.246 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhcCccHHHHHHHhhhc----Cch--hhHHHHHHHHhccHHHHHHHHHHHHHh
Q psy5930 2344 IIDQLAEMYSALREEDMWFGLWQKNA----KHK--ETLYALAYEQQGFYEQALKAYEVTIKK 2399 (2426)
Q Consensus 2344 ~~DaL~eLY~~L~E~D~~~GlWrrra----~~~--ET~~ALs~EQ~G~w~~AQ~~YE~a~~k 2399 (2426)
.+-.++..|...++.+--...+++-. ..+ -.+.|..|.+.|.+++|.+.|+++...
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 44568888888887776555555432 122 346788999999999999999999876
No 124
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=21.11 E-value=3.5e+02 Score=37.81 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=25.4
Q ss_pred HHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhCCc
Q psy5930 874 EVTNELTRNITLPNDLLREQSMYLLQVFAETQGKS 908 (2426)
Q Consensus 874 ~~~~~lv~eL~s~n~~VR~~aq~~L~~lae~t~~~ 908 (2426)
.++..|..-..+++.-||+.|.-+|..+.--++-.
T Consensus 647 ~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna 681 (963)
T 4ady_A 647 SAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEK 681 (963)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTT
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccc
Confidence 45555666667888899999999998887655433
No 125
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=20.96 E-value=4.1e+02 Score=27.81 Aligned_cols=106 Identities=14% Similarity=0.179 Sum_probs=68.0
Q ss_pred CChHHHHHHHhhhcCCCCCCChHHHHHHhhhc---CcHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCcchh
Q psy5930 2265 PSSINTIYESLAHCNPPLPIKPAIMTYLGKAQ---GLWHRVTLSLEKMAVEGLLKQNRMQNRAPSVADCYDFEPDHAPQQ 2341 (2426)
Q Consensus 2265 pnviqtlLegi~~c~p~i~lPP~LikyLgkt~---naW~~ai~~LE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2341 (2426)
..++..+-+++.. .| -.+.....+|..| +-|..|+..+++.... ++ + .
T Consensus 27 ~~A~~~~~~al~~-~p---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-------------------~p--~----~ 77 (177)
T 2e2e_A 27 EAQLQALQDKIRA-NP---QNSEQWALLGEYYLWQNDYSNSLLAYRQALQL-------------------RG--E----N 77 (177)
T ss_dssp CCCCHHHHHHHHH-CC---SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------HC--S----C
T ss_pred HHHHHHHHHHHHh-CC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------------------CC--C----C
Confidence 3455555555543 33 2345666666655 7899999999986541 00 0 1
Q ss_pred hhHHHHHHHH-HHhcCcc--HHHHHHHhhh----cCchh--hHHHHHHHHhccHHHHHHHHHHHHHh
Q psy5930 2342 QDIIDQLAEM-YSALREE--DMWFGLWQKN----AKHKE--TLYALAYEQQGFYEQALKAYEVTIKK 2399 (2426)
Q Consensus 2342 ~~~~DaL~eL-Y~~L~E~--D~~~GlWrrr----a~~~E--T~~ALs~EQ~G~w~~AQ~~YE~a~~k 2399 (2426)
...+-.++.+ |...++. |--...+++- ...++ -+.|..|.+.|.|++|.+.|+++...
T Consensus 78 ~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 78 AELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 2345568888 8888875 5444444432 22222 35678999999999999999999866
No 126
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=20.78 E-value=5.4e+02 Score=29.38 Aligned_cols=106 Identities=8% Similarity=-0.075 Sum_probs=68.8
Q ss_pred hHHHHHHHhhhcCCCCCCChHHHHHHhhhc---CcHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCcchhhh
Q psy5930 2267 SINTIYESLAHCNPPLPIKPAIMTYLGKAQ---GLWHRVTLSLEKMAVEGLLKQNRMQNRAPSVADCYDFEPDHAPQQQD 2343 (2426)
Q Consensus 2267 viqtlLegi~~c~p~i~lPP~LikyLgkt~---naW~~ai~~LE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2343 (2426)
++..+-.++... |. .+.....+|..| +-|..|+..+++.... .| + ...
T Consensus 110 A~~~~~~a~~~~-~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----------~~----------~----~~~ 160 (330)
T 3hym_B 110 ARRYLSKATTLE-KT---YGPAWIAYGHSFAVESEHDQAMAAYFTAAQL-----------MK----------G----CHL 160 (330)
T ss_dssp HHHHHHHHHTTC-TT---CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------TT----------T----CSH
T ss_pred HHHHHHHHHHhC-Cc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----------cc----------c----cHH
Confidence 444554454432 21 233444555443 7788899999876541 00 0 112
Q ss_pred HHHHHHHHHHhcCccHHHHHHHhhhc-Cch-----hhHHHHHHHHhccHHHHHHHHHHHHHhhh
Q psy5930 2344 IIDQLAEMYSALREEDMWFGLWQKNA-KHK-----ETLYALAYEQQGFYEQALKAYEVTIKKGL 2401 (2426)
Q Consensus 2344 ~~DaL~eLY~~L~E~D~~~GlWrrra-~~~-----ET~~ALs~EQ~G~w~~AQ~~YE~a~~k~~ 2401 (2426)
.+-.++.+|..+++.|--...+++-- ..| -.+.|..|.+.|.|++|.+.|+++.....
T Consensus 161 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 224 (330)
T 3hym_B 161 PMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIK 224 (330)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhh
Confidence 34458999999998887777776542 223 23568899999999999999999998753
No 127
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=20.68 E-value=2.6e+02 Score=27.86 Aligned_cols=58 Identities=16% Similarity=0.052 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhcCccHHHHHHHhhhcCc------------hhhHHHHHHHHhccHHHHHHHHHHHHHhhh
Q psy5930 2344 IIDQLAEMYSALREEDMWFGLWQKNAKH------------KETLYALAYEQQGFYEQALKAYEVTIKKGL 2401 (2426)
Q Consensus 2344 ~~DaL~eLY~~L~E~D~~~GlWrrra~~------------~ET~~ALs~EQ~G~w~~AQ~~YE~a~~k~~ 2401 (2426)
.+-.++.+|..+++.|--...+++-... .-.+.|..|...|.|++|.+.|+++.....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 120 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 120 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4556888888888777666555542111 134568899999999999999999987643
No 128
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=20.64 E-value=2.3e+02 Score=27.22 Aligned_cols=78 Identities=21% Similarity=0.239 Sum_probs=51.6
Q ss_pred CcHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCcchhhhHHHHHHHHHHhcCccHHHHHHHhhhcC----ch
Q psy5930 2297 GLWHRVTLSLEKMAVEGLLKQNRMQNRAPSVADCYDFEPDHAPQQQDIIDQLAEMYSALREEDMWFGLWQKNAK----HK 2372 (2426)
Q Consensus 2297 naW~~ai~~LE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DaL~eLY~~L~E~D~~~GlWrrra~----~~ 2372 (2426)
+.|..|+.++++.... + .+ ....+-.++.+|...++.+.-...+++-.. .+
T Consensus 15 ~~~~~A~~~~~~~~~~-------------------~--~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 69 (136)
T 2fo7_A 15 GDYDEAIEYYQKALEL-------------------D--PR----SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA 69 (136)
T ss_dssp TCHHHHHHHHHHHHHH-------------------C--TT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred CcHHHHHHHHHHHHHc-------------------C--Cc----chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCch
Confidence 6788888888876541 0 00 123445678888888877766666654321 11
Q ss_pred --hhHHHHHHHHhccHHHHHHHHHHHHHh
Q psy5930 2373 --ETLYALAYEQQGFYEQALKAYEVTIKK 2399 (2426)
Q Consensus 2373 --ET~~ALs~EQ~G~w~~AQ~~YE~a~~k 2399 (2426)
-.+.|..|.+.|.|++|.+.|+++...
T Consensus 70 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 98 (136)
T 2fo7_A 70 EAWYNLGNAYYKQGDYDEAIEYYQKALEL 98 (136)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 235577888999999999999888765
Done!