RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5930
(2426 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 79.5 bits (195), Expect = 1e-14
Identities = 96/652 (14%), Positives = 205/652 (31%), Gaps = 173/652 (26%)
Query: 1820 LVHALLCRLMSTFPTEPISSNVASKREELDHLYVCVSKVIYEGLSNYEKNPTATCSTLYG 1879
V C+ + P +S EE+DH+ + K+ + L+
Sbjct: 29 FVDNFDCKDVQDMPKSILSK------EEIDHIIM-------------SKDAVSGTLRLFW 69
Query: 1880 TVMMLKAACMNHPAYVDRFILEFMR-----VIQRMAREHIATSTADAPQQVGGELLIYCL 1934
T+ V +F+ E +R ++ + E S + I
Sbjct: 70 TL------LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT-------RMYIEQR 116
Query: 1935 DLVKTRFCSMSQE------TRKQFIGTIILGLIDKTPDIKV----MKAIIKMTEEWLKVN 1984
D R + +Q +R Q + L++ P V + K W+
Sbjct: 117 D----RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK---TWV-AL 168
Query: 1985 KVEQNNVPNLKEKCIILVKLMHFVEKRFPDLNTMF---------LEIVLYVYMDENLKNS 2035
V + + V+ + +F E VL E L+
Sbjct: 169 DVCLS----------------YKVQCKMD--FKIFWLNLKNCNSPETVL-----EMLQK- 204
Query: 2036 ELVTKLEPAFLSGL-RCSNPALRAKFFQLLNGSIRRLLHDR-----LLY---IFSSQNWE 2086
L+ +++P + S SN LR + +RRLL + LL + +++ W
Sbjct: 205 -LLYQIDPNWTSRSDHSSNIKLR---IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260
Query: 2087 PMGPHYWLKQCIELILVSAISSSKIKLAEETGVLPNISSVISLAEDPVERENYFNVVLN- 2145
C L+ + A T + ++L D E ++ L+
Sbjct: 261 AFNL-----SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD--EVKSLLLKYLDC 313
Query: 2146 -AADLKTE-----P---NLNGENILESLEEYEFDVDEFGNCRIQQLSREDLLNKQNKFLE 2196
DL E P ++ E+I + L ++ + ++ + L L
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWD---------NWKHVNCDKLTTIIESSLN 364
Query: 2197 NAREYNTSDLLVSLAQLCHLDTHLAEKV----WLDMFPQ-MWSILSETQQQNLTDEIIPF 2251
+ L+ H+ + W D+ + ++++ + +L ++
Sbjct: 365 VLEPAEYRKMFDRLSVF-PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423
Query: 2252 IVSGIHVVQ----------KDVHPSSINTIYESL-AHCNPPLPIKPA---IMTYLG---- 2293
I + +H S ++ Y + L +++G
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDH-YNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482
Query: 2294 KAQ-----GLWHRVTLSLE----KMAVEGLLKQNRMQNRAPSVADCYDFEP---DHAPQQ 2341
+ L+ V L K+ + N + ++ ++P D+ P+
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQKIRHDSTA-WNASGSILNTLQQLKFYKPYICDNDPKY 541
Query: 2342 QDIIDQLAEMYSALREEDMWFGLWQKNAKHKETL-YALAYEQQGFYEQALKA 2392
+ +++ + + + EE++ +K+ + L AL E + +E+A K
Sbjct: 542 ERLVNAILDFLPKI-EENLI------CSKYTDLLRIALMAEDEAIFEEAHKQ 586
Score = 69.5 bits (169), Expect = 1e-11
Identities = 96/654 (14%), Positives = 208/654 (31%), Gaps = 164/654 (25%)
Query: 827 MDLTGEVSSGAIDEARRNLKQLIVLCATPIKEPVDAETLTVQSKALSEVTNELTRNI-TL 885
MD E E + K ++ + + D + VQ S ++ E +I
Sbjct: 7 MDF--ETG-----EHQYQYKDILSVFEDAFVDNFDCKD--VQDMPKSILSKEEIDHIIMS 57
Query: 886 PNDLLREQSMYLLQVFAETQGKSVVQ-----VMEPHKDVLADIIPPKKLLIRNHSANAQI 940
+ + ++ L ++ + +VQ V+ + L I K R S ++
Sbjct: 58 KDAV--SGTLRLFWTL-LSKQEEMVQKFVEEVLRINYKFLMSPI---KTEQRQPSMMTRM 111
Query: 941 GLMEGNTFCQSLTPRLFTTDMSIHEHSSFFQEITNICESSDQALMKL-P----------- 988
+ + + ++F + S Q + QAL++L P
Sbjct: 112 YIEQRDRLYND--NQVFAKY-----NVSRLQPYLKL----RQALLELRPAKNVLIDGVLG 160
Query: 989 CYKPISSLVP--LRKAAMRALAS----WHYVPNCSQ-----KIFNTLFAALERP------ 1031
K + + ++ W + NC+ ++ L ++
Sbjct: 161 SGK--TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 1032 ---NPELQ-EAAFQAMKTFVNGSP-----IDLKSVY--EVMKPL------LLTLGDYRNL 1074
N +L+ + ++ + P + L +V + LLT +
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT 278
Query: 1075 NLVTARKLSYI-VQPFPSSFSEKLCEQLLVNLKNLFENIVAQKENPPKNSETEKIIVVII 1133
+ ++A ++I + + + + LL LK L + Q P E +
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLL--LKYL--DCRPQDL-PR---EVLTTNPRRL 330
Query: 1134 GIF----KESPA-----------AKAQFIEPLISLILENEH-----ALSIGPYS---PYR 1170
I ++ A IE ++++ E+ LS+ P S P
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT- 389
Query: 1171 EPLVKYLLRYPTETLQSMLSEIH-----MKDPLWRNFFVYLIKHQEGKCFRDALQTQFVD 1225
L + +++++H K P + I + E K + +
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI-YLELKVKLENEYA--LH 446
Query: 1226 RLILYTFSAINPNCTNLTTAEKLEM---QYIGIRLVSILIKLDTKWLSSQNQLISVMQKI 1282
R I+ ++ ++ L+ +IG L +I + +++ + +
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI----------EHPERMTLFRMV 496
Query: 1283 WCDDEYLQ---RHRNVENISYVHWKEPKLLVKILLHYFSHHRHIIDLLFFILRAVTERLL 1339
+ D +L+ RH W ++ L + +I D ERL+
Sbjct: 497 FLDFRFLEQKIRH------DSTAWNASGSILNTLQQLKFYKPYICD-----NDPKYERLV 545
Query: 1340 PDFTFLREFLETTVAQTYSIEWKRKAFLRFLELFKLALVSQ-----ELKAKILQ 1388
+ +FL + I K + +L ++AL+++ E K +Q
Sbjct: 546 NA---ILDFLPK--IEENLICSK------YTDLLRIALMAEDEAIFEEAHKQVQ 588
Score = 67.6 bits (164), Expect = 6e-11
Identities = 76/488 (15%), Positives = 145/488 (29%), Gaps = 131/488 (26%)
Query: 225 FGQFQPKDTKVYIRLVKWALKALDVYTLNPSSSSLLPNNLQRTPLQQASRTKEEKEVLEH 284
F K ++ + V+ L+ Y L + ++ Q + T+ E +
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLR--INY-------KFLMSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 285 FAGVFSLMTPQTFREIFASTIDYMVDRMAHNYTLQVISNSFLVTRDTSPVFA-------- 336
Q F Y V R+ L+ + L R V
Sbjct: 119 LYN-----DNQVFA-------KYNVSRLQPYLKLR---QALLELRPAKNVLIDGVLGSGK 163
Query: 337 TVLV-EYLLEH--MEEMGN-------GNVERSNLCLK-LFKLVFGSVSFYPAENEHMLRP 385
T + + L + +M N L+ L KL++ + + ++H
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 386 --HLHQIVNRSMELAMTAKEPYNYFLL-LR-----ALFRSIGGGSHDLL------YQEFL 431
+H I L +PY LL L + + LL +FL
Sbjct: 224 KLRIHSIQAELRRLLK--SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL 281
Query: 432 PLLRNLLQGLNSLQSGLHKQQMKDLFVELCLTVPVRLSSLLPYLPMLMDPLVSALNGSST 491
L+ L ++K L L LP + +P ++
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLL-LKYLDCRP---QDLPREVLTTNPRRLSIIA--E 335
Query: 492 LISQGL---------------RTLELCVDNLQPD-----------FLYD-HIQPVRADLM 524
I GL +E ++ L+P F HI P L+
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI-P--TILL 392
Query: 525 QALWRSLRSPNEQVAHVAYRVLGKFGGGNRKMMIEPQK-----------LDYNIRRSNGP 573
+W + + V+ K ++ ++E Q L+ ++ N
Sbjct: 393 SLIWFDVIKSDVM------VVVNKL---HKYSLVEKQPKESTISIPSIYLELKVKLENEY 443
Query: 574 AVVVHFPEHQKTIN-LSVEKAIDVAITVLKNPAVDM-FYRKQGWKVVKGYIISSMNLSDN 631
A+ H+ ++ ++ K D L P +D FY + G+ + ++ +
Sbjct: 444 AL------HRSIVDHYNIPKTFDS--DDLIPPYLDQYFY----SHI--GHHLKNIEHPER 489
Query: 632 RSTIQKLF 639
+ + +F
Sbjct: 490 MTLFRMVF 497
Score = 67.2 bits (163), Expect = 6e-11
Identities = 98/645 (15%), Positives = 171/645 (26%), Gaps = 190/645 (29%)
Query: 34 HHVRQLLPMSDLIKAVHLFSKNIHDETLPTTIHTMSCKLLLNLVDFIRTKNQAEIEQGRI 93
HH M K+I + CK + ++ I +K EI+ I
Sbjct: 5 HH------MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSK--EEIDH--I 54
Query: 94 ---GDNIGQ-----ELLERMLETMVLKF-KTIAKLQLPVLTAKAKTQLALPAPELPSTTE 144
D + L E MV KF + + ++ L + KT+ P+ E
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114
Query: 145 DVKPVVNPQTNLIDSPAKTTAGVEKQKPKLGISNSPAANYNVNDCRSIVKILICGV---- 200
+ N D+ V + +P L + A + R +LI GV
Sbjct: 115 QRDRLYN------DNQVFAKYNVSRLQPYLKLRQ---ALLEL---RPAKNVLIDGVLGSG 162
Query: 201 KTVTMGLAASKVNA-----------------------------------------SGGEG 219
KT +A + S +
Sbjct: 163 KTW---VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 220 PTTPPFGQFQPKD-------TKVYIR--LV------KWALKALD------VYTLNPS-SS 257
+ + +K Y LV A A + + T +
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD 279
Query: 258 SLLPNNLQRTPLQQASRTKEEKEVLEHFAGVFSLMTPQTFRE-----------IFA---- 302
L L S T EV PQ I A
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD-CRPQDLPREVLTTNPRRLSIIAESIR 338
Query: 303 ---STIDY--MVDRMAHNYTLQVISN------------SFLVTRDTSPVFATVLV----E 341
+T D V+ ++ N V ++ + +L +
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398
Query: 342 YLLEHMEEMGNGNVERSNLCLKLFKLVFGSVSFY--------PAENEHMLRPHLHQ-IVN 392
+ + + N + S L K K ++S ENE LH+ IV+
Sbjct: 399 VIKSDVMVVVNKLHKYS-LVEKQPKE--STISIPSIYLELKVKLENE----YALHRSIVD 451
Query: 393 RSMELAMTAKEPYNYFLLLRA---LFRSIGGGSH--DLLYQEFLPLLRNLLQGLNSLQSG 447
+ + + + IG H ++ + E + L R + L+
Sbjct: 452 H---YNIPKTFDSDDLIPPYLDQYFYSHIG--HHLKNIEHPERMTLFRMVFLDFRFLEQ- 505
Query: 448 LHKQQMKDLFVELCLTVPVRLSSLLPYLPMLMDPLVSALNGSSTLISQGLRTLELCVDNL 507
K +R S + + L I E V+ +
Sbjct: 506 ------K-----------IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI 548
Query: 508 QPDFLYDH----IQPVRADLMQALWRSLRSPNEQVAHVAYRVLGK 548
DFL I DL++ +L + +E + A++ + +
Sbjct: 549 L-DFLPKIEENLICSKYTDLLR---IALMAEDEAIFEEAHKQVQR 589
Score = 66.4 bits (161), Expect = 1e-10
Identities = 103/684 (15%), Positives = 217/684 (31%), Gaps = 205/684 (29%)
Query: 1415 EDEDNKNANLVNEFIAKIISPITESPPVFVISDNVRILLLQMCCLIVEQSYHYVYNVSQG 1474
++ D K+ V + I+S E + + D V L L+ +Q V +
Sbjct: 31 DNFDCKD---VQDMPKSILSK-EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE- 85
Query: 1475 KILVNKAKPLIMFAWQL-----SLLGKNFVDPATRYHGHLLLAHMIAKFGVSQRVVVQVF 1529
++ +M + S++ + +++ R + + AK+ VS+
Sbjct: 86 --VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND---NQVFAKYNVSRLQPYLK- 139
Query: 1530 LGLLRAHASEVRP---IVRQ----------ALEIL-----TPAFPGRV---DDGQRMLLV 1568
LR E+RP ++ AL++ ++ +
Sbjct: 140 ---LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC---- 192
Query: 1569 YTKKILVEEGHSNPQLSHVLTLIVKHYKVY------YPVRHGLIQQMIASMQRLGFSSSA 1622
+ + ++E L +L I ++ +R I + A ++RL S
Sbjct: 193 NSPETVLE------MLQKLLYQIDPNWTSRSDHSSNIKLR---IHSIQAELRRL-LKS-- 240
Query: 1623 MDHKK-LSVELADVIIKWELQ------------RVKEEAEGTSGGKAIQEPPRKKMALES 1669
++ L V L +V R K+ + S +
Sbjct: 241 KPYENCLLV-LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH--ISLDHHSMT 297
Query: 1670 FAPGESSMKYDIPTASKPIEKVHADAVINFLAR-LSCQVSDLPPNLSSSMQSQVIQT-PG 1727
P E + L + L C+ DLP +V+ T P
Sbjct: 298 LTPDEV---------------------KSLLLKYLDCRPQDLPR--------EVLTTNP- 327
Query: 1728 EMLARRCVSLIRMALKPEV-----WSHQNTEFKLTWLDKVLSSIDQ--PT------ANLG 1774
+S+I +++ + W H N + KLT + SS++ P L
Sbjct: 328 --RR---LSIIAESIRDGLATWDNWKHVNCD-KLT--TIIESSLNVLEPAEYRKMFDRLS 379
Query: 1775 ----NISIALELLTLLITILDEGQILHIIKPL-QRGLVACISSSITKVIRLVHALLCRLM 1829
+ I LL+L+ + + ++ ++ L + LV T I ++ L
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI---PSIYLEL- 435
Query: 1830 STFPTEPISSNVASKREELDHLYVCVSKVIYEGLSNYEKNPTATCSTLYGTVMMLKAACM 1889
+ + A R +DH Y ++ +
Sbjct: 436 ----KVKLENEYALHRSIVDH---------YNIPKTFDSDDLI----------------- 465
Query: 1890 NHPAYVDRFILEFMRVIQRMAREHIATSTADAPQQVGGELLIYCLDLVKTRFCSMSQETR 1949
P Y+D++ + H+ + P+++ +++ LD RF + Q+ R
Sbjct: 466 --PPYLDQYFYSH------IGH-HL--KNIEHPERMTLFRMVF-LDF---RF--LEQKIR 508
Query: 1950 KQFIGTIILG-LIDKTPDIKVMKAIIKMTEEWLKVNKVEQNNVPNLKEKCIILVKLMHFV 2008
G +++ +K K I +N P + ++ ++ F+
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPYI-------------CDNDPKYER---LVNAILDFL 552
Query: 2009 EKRFPDL-NTMFLEIVLYVYMDEN 2031
K +L + + +++ M E+
Sbjct: 553 PKIEENLICSKYTDLLRIALMAED 576
Score = 63.3 bits (153), Expect = 1e-09
Identities = 80/488 (16%), Positives = 149/488 (30%), Gaps = 142/488 (29%)
Query: 2027 YMD-----ENLKNSELVTKLEPAFLSGLRCSN------PAL-RAKFFQLLNGSIRRLLHD 2074
+MD + ++++ E AF+ C + L + + ++
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 2075 RLLYIFSSQNW--------EPMGPHY-WLKQCI--ELILVSAISSSKIKLAEETGVLPNI 2123
RL + S+ E + +Y +L I E S ++ I E+ L N
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI---EQRDRLYND 122
Query: 2124 SSVISLAEDPVERENYFNVVLNAA-DLKTEPNL-------NGENIL--ESLEEYEFDVD- 2172
+ V + + V R + + A +L+ N+ +G+ + + Y+
Sbjct: 123 NQVFA--KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 2173 -------EFGNCRIQQLSREDLLNKQNKFLENAREYNTS--DLLVSLAQLCH-----LDT 2218
NC S E +L K L TS D ++ H L
Sbjct: 181 DFKIFWLNLKNCN----SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 2219 HLAEK-----------VW----LDMFPQMWSILSETQQQNLTDEIIPFIVSGIHVVQKDV 2263
L K V + F IL T+ + +TD + + H+
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT--HISL--D 292
Query: 2264 HPSSINTIYESLA------HCNPP-LP-----IKPAIMTYLGKA--QGL-----WHRVTL 2304
H S T E + C P LP P ++ + ++ GL W V
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC 352
Query: 2305 SLEKMAVEG---LLKQNRMQNRAPSVADCYD----FEPD-HAPQQ--------------Q 2342
+E +L+ + +D F P H P
Sbjct: 353 DKLTTIIESSLNVLEPAEYR-------KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405
Query: 2343 DIIDQLAEMYSALREE---------DMWFGLWQKN----AKHKETL--YAL--AYEQQGF 2385
++++L + YS + ++ ++ L K A H+ + Y + ++
Sbjct: 406 VVVNKLHK-YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL 464
Query: 2386 YEQALKAY 2393
L Y
Sbjct: 465 IPPYLDQY 472
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 65.1 bits (158), Expect = 3e-10
Identities = 69/464 (14%), Positives = 134/464 (28%), Gaps = 151/464 (32%)
Query: 1987 EQNNVPNLKEKCIILVKLMHFVEKRF-PDLNTMFLEIVLYVYMD-EN--LKNSE---LVT 2039
E L + K + +V P F +++ + EN L+ ++ L
Sbjct: 53 EPTTPAEL------VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAA 106
Query: 2040 KLEPAFLSGLRCSNPALRAKFFQ---LLNGSIRR-----LLHD------RLLYIFSSQ-N 2084
KL + L + ++ + + + L +L+ IF Q N
Sbjct: 107 KLLQENDTTLVKTKELIKN-YITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGN 165
Query: 2085 WEPMGPHYWLKQCIELI--------LVSAISSSKIKLAEETGVLPNISSVISLAEDPVER 2136
+ + + EL LV + IK + ET + L ++
Sbjct: 166 TDD-----YFE---ELRDLYQTYHVLVGDL----IKFSAET--------LSELIRTTLDA 205
Query: 2137 ENYFNVVLNAADLKTEPN----------------LNGENILESLEEYEFDVDEFGNCRIQ 2180
E F LN + P+ L G + L Y ++
Sbjct: 206 EKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIG---VIQLAHYVVT------AKLL 256
Query: 2181 QLSREDLLNKQ----------------------NKFLENAREYNTSDLLVSLAQLCHLDT 2218
+ +L + F + R+ T +L + C+
Sbjct: 257 GFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAIT--VLFFIGVRCY--- 311
Query: 2219 HLAEKVWLDMFPQMWSILSETQQQNLT-DEIIP---FIVSGIHVVQKDVHPSSINTIYES 2274
+ +P S+ + +L +E +P +S + + + +
Sbjct: 312 --------EAYPNT-SLPPSILEDSLENNEGVPSPMLSISNL----------TQEQVQDY 352
Query: 2275 LAHCNPPLPIKPAIMTYL----------GKAQGLWHRVTLSLEKMAVEGLLKQNR--MQN 2322
+ N LP + L G Q L + + L+L K L Q+R
Sbjct: 353 VNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSL-YGLNLTLRKAKAPSGLDQSRIPFSE 411
Query: 2323 RAPSVADCYD--FEPDH----APQQQDIIDQLAEMYSALREEDM 2360
R ++ + P H P I L + + +D+
Sbjct: 412 RKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDI 455
Score = 64.3 bits (156), Expect = 6e-10
Identities = 116/811 (14%), Positives = 205/811 (25%), Gaps = 374/811 (46%)
Query: 1415 EDEDNKNANLVNEFIAKIISPITESPPVFVISDNVRILLLQMCCLIVEQSYHYVYNVSQG 1474
+DE A LV +F+ + S + S + ++L L + E Y
Sbjct: 51 DDEPTTPAELVGKFLGYVSSLVEPSK----VGQFDQVLNLCLTEF--ENCY--------- 95
Query: 1475 KILVNKAKPLIMFAWQLSLLGKNFVDPATRYHGHLLLAHMIAKFGVSQRVVVQVFLGLLR 1534
L G + H L A ++ + + ++ +
Sbjct: 96 ------------------LEGNDI---------HALAAKLLQENDTTLVKTKELIKNYIT 128
Query: 1535 AHASEVRPIVRQALEILTPA-----------FPGRVDDGQRMLLVYTKKILVEEGHSNPQ 1583
A RP +++ L A F G GQ Y EE
Sbjct: 129 ARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF-G----GQGNTDDY-----FEE------ 172
Query: 1584 LSHVLTLIVKHYKVYYPVRHGLIQQMIASMQRLGFSSSAMDHKKLSVELADVIIKWELQR 1643
L + Y+ Y+ + LI+ ++ L + +D +K+ + + I++W
Sbjct: 173 LRDL-------YQTYHVLVGDLIKFSAETLSEL--IRTTLDAEKVFTQGLN-ILEW---- 218
Query: 1644 VKEEAEGTSGGKAIQEPPRKKMALESFAPGESSMKYDIPTASKPIEKVHADAVINFLARL 1703
++ P S P + +L
Sbjct: 219 -------------LENP--------SNTPDKD-----------------------YLL-- 232
Query: 1704 SCQVSDLPPNLSSSMQSQVIQTPGEMLARRCVSLIRMALKPEVWSHQNTEFKLTWLDKVL 1763
S +S P VIQ LA V+ + P
Sbjct: 233 SIPIS-CP-------LIGVIQ-----LAHYVVTAKLLGFTPG------------------ 261
Query: 1764 SSIDQPTANLGNISIALELLTLLITILDEGQILHIIKPLQRGLV--ACISSSITK----- 1816
EL + L Q GLV I+ + +
Sbjct: 262 -----------------ELRSYLKGATGHSQ----------GLVTAVAIAETDSWESFFV 294
Query: 1817 -VIRLVHALL---CRLMSTFPTEPISSNVASKREELDHLYVCVSKVIYEGLSNYEKNPTA 1872
V + + L R +P + ++ E N E P+
Sbjct: 295 SVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLE-----------------NNEGVPSP 337
Query: 1873 TCSTLYGTVMMLKAACMNHPAYVDRFILEFMRVIQRM-----AREHIATSTADAPQQ--V 1925
ML + N + + ++ + + A + + S + + V
Sbjct: 338 ----------ML--SISN----LTQEQVQ--DYVNKTNSHLPAGKQVEISLVNGAKNLVV 379
Query: 1926 GGELLIYCLDLVKTRFCSMSQETRKQFIGTIILGLIDKTPDIKVMKAIIKMTEEWLKVNK 1985
G L ++ RK K P
Sbjct: 380 SG----PPQSL-----YGLNLTLRKA-----------KAPS------------------G 401
Query: 1986 VEQNNVPNLKEKCIILVKLMHFVEKRFPDLNTMFLEIVL-YVYMDENLKNSELVTKLEPA 2044
++Q+ +P + K + FL + + +S L L PA
Sbjct: 402 LDQSRIPFSERK---------------LKFSNRFLPVASPF--------HSHL---LVPA 435
Query: 2045 ---FLSGLRCSNPALRAK------F-------FQLLNGSIRRLLHDRLLYIFSSQ-NWE- 2086
L +N + AK + ++L+GSI + D I WE
Sbjct: 436 SDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDC---IIRLPVKWET 492
Query: 2087 --PMGPHYWLKQCIELIL------VSAISSSKIKLAEETGVLPNISSVISLAEDPVEREN 2138
+ IL S + + + TGV VI
Sbjct: 493 TTQFKATH--------ILDFGPGGASGLGVLTHRNKDGTGV-----RVIV---------- 529
Query: 2139 YFNVVLNAADLKTEPNLNGENILESLEEYEF 2169
A L P+ ++Y F
Sbjct: 530 -------AGTLDINPD----------DDYGF 543
Score = 63.1 bits (153), Expect = 1e-09
Identities = 122/687 (17%), Positives = 205/687 (29%), Gaps = 239/687 (34%)
Query: 20 SLRPLVYSTLADLVHHVRQLLPMSDLIKAVHL---FSKNIHDETL-------PTTIHTMS 69
S RPL S L H + L+P + A L F+K + + T PTT
Sbjct: 5 STRPLTLS-HGSLEHVL--LVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTT----P 57
Query: 70 CKLLLNLVDFIRTKNQAEIEQGRIGDNIGQELLERML---ETMVLKFKTI----AKLQLP 122
+L+ + ++ + +E ++G ++L L E L+ I AKL
Sbjct: 58 AELVGKFLGYVSS----LVEPSKVGQF--DQVLNLCLTEFENCYLEGNDIHALAAKLLQE 111
Query: 123 VLTAKAKTQL-------ALPAPELPSTTEDVKPVVNPQTNLIDS----PAKTTA---GVE 168
T KT+ A + P + + L + A+ A G
Sbjct: 112 NDTTLVKTKELIKNYITARIMAKRPFDKK-------SNSALFRAVGEGNAQLVAIFGG-- 162
Query: 169 KQKPKLGISNSPAANYNVNDC-----------RSIVKILICGVKTVTMGLAASKVNASGG 217
Q G N +D +V LI L + ++A
Sbjct: 163 -Q----G---------NTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAE-- 206
Query: 218 EGPTTPPFGQFQPKDTKVYIRLVKWALKALDVYTLNPSSSSLLPNN--LQRTP------- 268
F Q + +++W L+ NPS++ P+ L P
Sbjct: 207 -----KVFTQ--------GLNILEW----LE----NPSNT---PDKDYLLSIPISCPLIG 242
Query: 269 LQQASRTKEEKEVLEHFAGVFSLM--TPQTFREIFASTIDYMVDRMAHNYTLQVISNSFL 326
+ Q L H+ L+ TP R + +++ +
Sbjct: 243 VIQ----------LAHYVVTAKLLGFTPGELRSYLKGATGHSQG---------LVTAVAI 283
Query: 327 VTRDTSPVFATVLVEYLLEHMEEMGNGNVERSNLCLKLFKLVFGSVSFYPA------ENE 380
D+ F + + + + +G R + + S P+ EN
Sbjct: 284 AETDSWESFFVSVRKA-ITVLFFIG----VRCYEA-------YPNTSLPPSILEDSLENN 331
Query: 381 -----HML------RPHLHQIVNRSMELAMTAKEPYNYFLLLRALFRS-----IGGGSHD 424
ML + + VN+ + P + + +L + G
Sbjct: 332 EGVPSPMLSISNLTQEQVQDYVNK-----TNSHLPAGKQVEI-SLVNGAKNLVVSGPPQS 385
Query: 425 LLYQEFLPLLRNL--LQGLNSLQSGLHKQQMKDLFVE--LCLTVPVRLSSLL-PYLPMLM 479
L LR GL+ QS + + K F L + P S LL P ++
Sbjct: 386 L--YGLNLTLRKAKAPSGLD--QSRIPFSERKLKFSNRFLPVASPFH-SHLLVPASDLIN 440
Query: 480 DPLVS---ALNGSSTLI-----SQG--LRTLELCVDNLQPDFLYDHI--QPVRADLMQAL 527
LV + N I G LR L ++ + D I PV+
Sbjct: 441 KDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLS---GSISER-IVDCIIRLPVK------- 489
Query: 528 WRSLRSPNEQVAHVAYRVLGKFG-GGNRKMMIEPQKLDYNIRRSNGPAVVVHFPEHQKTI 586
W + + H+ + FG GG + L + + G V+
Sbjct: 490 WETT--TQFKATHI---LD--FGPGGASGL----GVLTHRNKDGTGVRVI---------- 528
Query: 587 NLSVEKAIDVAITVLKNPAVDMFYRKQ 613
VA T+ NP D + KQ
Sbjct: 529 ---------VAGTLDINPDDDYGF-KQ 545
Score = 62.4 bits (151), Expect = 2e-09
Identities = 99/629 (15%), Positives = 178/629 (28%), Gaps = 222/629 (35%)
Query: 999 LRKAAMRAL--------ASWHYVP-----NCSQ--KIFN-TL------FAALERP--NPE 1034
+ + R L VP SQ + FN L FAA + P E
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLL-VPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAE 59
Query: 1035 LQEAAFQAMKTFVNG--SPIDLKSVYEVMKPLLLT-----LGDYRNLNLVTARKLSYIVQ 1087
L F +V+ P + +V+ L L +++ + A+
Sbjct: 60 LV-GKFLG---YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEG-NDIHALAAK------- 107
Query: 1088 PFPSSFSEKLCEQLLVNLKNLFENIVAQKENPPKNSETEKIIVVIIGIFK--ESPAAK-- 1143
L + + +KN + K K S + +F+ A+
Sbjct: 108 -LLQENDTTLVKTKEL-IKNYITARIMAKRPFDKKSNS--------ALFRAVGEGNAQLV 157
Query: 1144 AQF-----IEP----LISLILENEHALSIGPYSPYREPLVKYLLRYPTETLQSMLSEIHM 1194
A F + L L Y Y LV L+++ ETL ++
Sbjct: 158 AIFGGQGNTDDYFEELRDL------------YQTYH-VLVGDLIKFSAETLSELIRTTLD 204
Query: 1195 KDPLWRNFFVYLIKHQEGKCFRDALQTQFVDRLILYTFSAINPNCTNLTTAEKLEMQYIG 1254
+ + +G + L+ + P+ L +
Sbjct: 205 AEKV----------FTQGLNILEWLEN-----------PSNTPDKDYLLSIP-------- 235
Query: 1255 IRLVSILIKLDTKWLSSQNQLISVMQKIWCDDEYLQRHRNVENISYVHWKEPKLLVKILL 1314
+S LI V+Q L
Sbjct: 236 ---ISC-------------PLIGVIQ--------------------------------LA 247
Query: 1315 HYFSHHRHIIDL----LFFILRAVTERLLPDFTFLREFLETTVAQTYSIEWK--RKAFLR 1368
HY + ++ L L+ T + L T VA + W+ + +
Sbjct: 248 HYVVTAK-LLGFTPGELRSYLKGATGHS--------QGLVTAVAIAETDSWESFFVSVRK 298
Query: 1369 FLE-LFKLALVSQE------LKAKILQLVLIPCLTVCFERGEGDK--LIGGTGLPEDEDN 1419
+ LF + + E L IL+ E EG ++ + L +++
Sbjct: 299 AITVLFFIGVRCYEAYPNTSLPPSILED--------SLENNEGVPSPMLSISNLTQEQVQ 350
Query: 1420 KNANLVNEFIA---KI-ISPITESPPVFVISDNVRILLLQMCCLIVE-QSYHYVYNVSQG 1474
N N + ++ IS + V+S + L L + + + Q
Sbjct: 351 DYVNKTNSHLPAGKQVEIS-LVNGAKNLVVSGPPQSL----YGLNLTLRKAKAPSGLDQS 405
Query: 1475 KILVNKAKPLIMFAWQLSLLGKNFVDPATRYHGHLL----------LAHMIAKFGVSQ-R 1523
+I ++ K F+ + F+ A+ +H HLL L F +
Sbjct: 406 RIPFSERKL--KFSNR-------FLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQ 456
Query: 1524 V-VVQVFLGL-LRAHASEVRP-IVRQALE 1549
+ V F G LR + + IV +
Sbjct: 457 IPVYDTFDGSDLRVLSGSISERIVDCIIR 485
Score = 59.3 bits (143), Expect = 2e-08
Identities = 110/663 (16%), Positives = 199/663 (30%), Gaps = 208/663 (31%)
Query: 1741 ALKPEVWSHQNTEFKLTWL-------------DKVLSSIDQPTANLGN---ISIALELLT 1784
+ +P SH + E L ++ + +PT + EL+
Sbjct: 5 STRPLTLSHGSLEH--VLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVG 62
Query: 1785 LLITILDEGQILHIIKPLQRGLVACISSSITKVIRL--------------VHALLCRLMS 1830
+ G + +++P + G +V+ L +HAL +L+
Sbjct: 63 KFL-----GYVSSLVEPSKVG-------QFDQVLNLCLTEFENCYLEGNDIHALAAKLLQ 110
Query: 1831 TFPTEPISSNVASKREELDHLYVCVSKVIYEGLSNYEKNPTATCSTLYGTVMMLKAACM- 1889
T + K +EL Y+ + S L+ V A +
Sbjct: 111 ENDTTLV------KTKELIKNYITARIMAKRPFDKKSN------SALFRAVGEGNAQLVA 158
Query: 1890 ------NHPAYVDRFILEFMRVIQRMAREHIATSTADAPQQVGGELLIYCLDLVKTRFCS 1943
N Y + E +R + + + + E L +L++T
Sbjct: 159 IFGGQGNTDDYFE----E-LRDLYQTYHVLVGDLIKFS-----AETL---SELIRT---- 201
Query: 1944 MSQETRKQFIGTIILGLIDKTPDIKVMKAIIKMTEEWLKVNKVEQNNVPNLKE-----KC 1998
+ + K F GL +I EWL+ N + L
Sbjct: 202 -TLDAEKVFT----QGL-----NIL----------EWLE-NPSNTPDKDYLLSIPISCPL 240
Query: 1999 IILVKLMHF-------------VEKRFPDLNTMFLEIVLYVYM------DENLKNSELVT 2039
I +++L H+ + +V V + + +
Sbjct: 241 IGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA- 299
Query: 2040 KLEPAFLSGLRC----SNPALRAKFFQLLNGSIRRLLHDRLLYIFSSQNWE----PMGPH 2091
+ F G+RC N +L +L D S +N E PM
Sbjct: 300 -ITVLFFIGVRCYEAYPNTSLPPS-----------ILED------SLENNEGVPSPM--- 338
Query: 2092 YWLKQCIELILVSAISSSKI-KLAEET-GVLPNISSV-ISLAEDPVERENYFNVVL--NA 2146
+ +S ++ ++ +T LP V ISL + N+V+
Sbjct: 339 ---------LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGA--K----NLVVSGPP 383
Query: 2147 ADLKTEPNLNGENILESLEEYEFDVDEFGNCRIQQLSREDLLNKQNKFLENAREYNTSDL 2206
L LN +L + + RI R+ L N+FL A ++ S L
Sbjct: 384 QSLY---GLN-----LTLRKAKAP-SGLDQSRIPFSERK--LKFSNRFLPVASPFH-SHL 431
Query: 2207 LVSLAQLCHLDTHLAEKVWL--DM-FPQMWSILSETQQQNLTDEIIPFIVSGIHVVQKDV 2263
LV + L + D + D+ P ++ + + L+ I IV I ++ V
Sbjct: 432 LVPASDLINKDLVKNNVSFNAKDIQIP-VYDTFDGSDLRVLSGSISERIVDCI--IRLPV 488
Query: 2264 H-PSSINTIYESLAHCNPPLPIKPAIMTYLGK-----AQGLWHRVTL--SLEKMAVEGL- 2314
++ H L P + LG G RV + +L+ +
Sbjct: 489 KWETTTQF---KATHI---LDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYG 542
Query: 2315 LKQ 2317
KQ
Sbjct: 543 FKQ 545
Score = 56.2 bits (135), Expect = 1e-07
Identities = 84/529 (15%), Positives = 161/529 (30%), Gaps = 175/529 (33%)
Query: 207 LAASKVNASGGEGPTTPP--FGQF--------QPKDTKVYIRLVKWALKAL--------D 248
L + + PTTP G+F +P + +++ L D
Sbjct: 41 LPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND 100
Query: 249 VYTLNPSSSSLLPNNLQRTPLQQASRTKEEKEVLEH-FAGVFSLMTPQT-------FR-- 298
++ L ++ LL N T L + KE++++ P FR
Sbjct: 101 IHAL---AAKLLQEN--DTTLVKT------KELIKNYITARIMAKRPFDKKSNSALFRAV 149
Query: 299 -----EIFA------STIDYMVDRMAHNYTLQVISNSFLVTRDTSPVFATVLVEYLLEHM 347
++ A +T DY + + Y T V L+++ E +
Sbjct: 150 GEGNAQLVAIFGGQGNTDDY-FEELRDLY-------------QTYHVLVGDLIKFSAETL 195
Query: 348 EEMGNGNVERSNLCLKLFKLV--------------FGS--VSFYPAENEHMLRP--HLHQ 389
E+ ++ + + ++ S +S P + Q
Sbjct: 196 SELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC----------PLIGVIQ 245
Query: 390 IVNRSMELAMTAK----EPYNYFLLLRALFRSIGGGSHDLL----------YQEFLPLLR 435
+ + +TAK P LR+ + G S L+ ++ F +R
Sbjct: 246 LAH----YVVTAKLLGFTPGE----LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVR 297
Query: 436 NLLQGLNSLQSGLHKQQMKDLFVELCLTVPVRLSSLLPYLPMLMDPLVSALNGSSTLISQ 495
+ L G+ + P +SL P +L D S N +
Sbjct: 298 KAITVL--FFIGVRCYE----------AYPN--TSLPP--SILED---SLENN------E 332
Query: 496 GLRTLELCVDNLQPDFLYDHIQPVRADL--MQALWRSLR-SPNEQVAHVA--YRVLGKFG 550
G+ + L + NL + + D++ + L + + SL V V+ + L
Sbjct: 333 GVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV--VSGPPQSLYGLN 390
Query: 551 GGNRKMMIEPQKLD-----YNIRRSNGPAVVVHF-----PEHQKTINLS--VEKAIDVAI 598
RK P LD ++ R+ F P H S + A D+
Sbjct: 391 LTLRKAKA-PSGLDQSRIPFSERK---LKFSNRFLPVASPFH------SHLLVPASDLIN 440
Query: 599 TVLKNPAVDMFYRKQGWKV-----VKGYIISSMNLSDNRSTIQKLFSHP 642
L V + + ++ G + ++ S + + + P
Sbjct: 441 KDLVKNNVS--FNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLP 487
Score = 51.2 bits (122), Expect = 6e-06
Identities = 97/657 (14%), Positives = 177/657 (26%), Gaps = 245/657 (37%)
Query: 589 SVEKAIDV------AITVLKNPAVDMFYRKQGWKVVKGYIISSMNLSDNRSTIQKLFSH- 641
S+E + V + L+ + F + + +G+ D +T +L
Sbjct: 15 SLEHVLLVPTASFFIASQLQ----EQFNKILP-EPTEGFA-----ADDEPTTPAELVGKF 64
Query: 642 PSFGNTESSQGTMYKYAD---PTIRNTHQNALTG--I--FMVYLIKELRKDSLLYTVLVV 694
+ ++ + ++ + L G I L++E +L+ T ++
Sbjct: 65 LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDT-TLVKTKELI 123
Query: 695 RHYTLVAITQQTGPFPLYGKSALLEGTMDPLVLIDA-IAVILGHEDKELCKPGYIALKCI 753
++Y + A PF SAL + +A + I G G
Sbjct: 124 KNY-ITARIMAKRPFDKKSNSALFRAVGEG----NAQLVAIFG---------G------- 162
Query: 754 METATCITGSIENACNLPLMEYLAERMCNLCYERAWYAKLGGCYAIKFFYNTMAIKWVYS 813
G+ + +Y E L L Y T Y
Sbjct: 163 -------QGNTD--------DYFEE----L-------RDL---------YQT------YH 181
Query: 814 HMFVFVKALLFVMMDLTGEVSSGAIDEARR-----NLKQLIVLCATPIKEPVDAETLTVQ 868
V L+ + E+ +D + N+ + + P P D + L
Sbjct: 182 V---LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL---ENPSNTP-DKDYLL-- 232
Query: 869 SKALSEVTNELTRNITLPNDLLREQSMYLLQ-----VFAETQGKSVVQVMEPHKDVL--- 920
S +S P L+ ++Q V A+ G + ++ K
Sbjct: 233 SIPIS-----------CP--LI-----GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHS 274
Query: 921 ADIIPPKKLLI---------RNHSANA-----QIGLMEGNTFCQSLTPRLFTTDMSIHEH 966
++ + I A IG+ C P +
Sbjct: 275 QGLVTA--VAIAETDSWESFFVSVRKAITVLFFIGVR-----CYEAYP-----------N 316
Query: 967 SSFFQEITNICESSDQALMKLPCYKPISSLVPLRKAAMRALASWHYVPNCSQKIFNTLFA 1026
+S I +++ +P M L+ + N +Q+ +
Sbjct: 317 TSLPPSILEDSLENNE---GVPSP-------------M--LS----ISNLTQE---QVQD 351
Query: 1027 ALERPNPELQEAA------FQAMKTFV-NGSPIDLKSVYEVMKPLLLTLGDYRNLNLVTA 1079
+ + N L K V +G P L L LTL R +
Sbjct: 352 YVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYG-------LNLTL---RKAKAPSG 401
Query: 1080 ----------RKLSYIVQ------PFPSSFSEKLCEQLLVNLKNLFENIVAQKENPP--- 1120
RKL + + PF S + + +L + A+ P
Sbjct: 402 LDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYD 461
Query: 1121 ----------KNSETEKIIVVIIGIFKESPA--AKAQFIEPLISLILENEHALSIGP 1165
S +E+I+ II P + H L GP
Sbjct: 462 TFDGSDLRVLSGSISERIVDCII----RLPVKWETTTQFKAT--------HILDFGP 506
Score = 44.7 bits (105), Expect = 5e-04
Identities = 72/400 (18%), Positives = 111/400 (27%), Gaps = 124/400 (31%)
Query: 2055 ALRAKFFQLLNGSIR-RLLHDRLLYIFSSQNWEPMGPHYWLKQCIELILVSAISSSKIKL 2113
+ R L +GS+ LL + +SQ L++ IL +
Sbjct: 5 STRP--LTLSHGSLEHVLLVPTASFFIASQ----------LQEQFNKILPEP--TEGFAA 50
Query: 2114 AEETGVLPNISSVISLA-------EDPVERENY--FNVVLNAADLKT-EPN-LNGENI-- 2160
+E ++ L VE F+ VLN L E L G +I
Sbjct: 51 DDEP------TTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLC-LTEFENCYLEGNDIHA 103
Query: 2161 ----LESLEE------------YEFDVDEFGNCRIQQLSREDLLNKQNKFLENAREY--- 2201
L + Y + S L + NA+
Sbjct: 104 LAAKLLQENDTTLVKTKELIKNY-ITARIMAKRPFDKKSNSALFRAVGE--GNAQLVAIF 160
Query: 2202 ----NTSDLLVSLAQLCHLDTHLAEKVWLDMFPQMWSILSETQQQNLTDEIIPFIVSGIH 2257
NT D L L L D+ LSE + L E G++
Sbjct: 161 GGQGNTDDYFEELRDLYQTYHVLVG----DLIKFSAETLSELIRTTLDAE--KVFTQGLN 214
Query: 2258 VVQKDVHPSSI-NTIYESLAHCNPPLPIK-PAIMTYLGKAQGLWHRVTLSLEKMAVEGLL 2315
+++ +PS+ + Y L PI P I G Q + VT + G
Sbjct: 215 ILEWLENPSNTPDKDY--LLSI----PISCPLI----GVIQLAHYVVTAK-----LLGFT 259
Query: 2316 KQNRMQNRAPSVADCYDFEPDHAPQQQDIIDQLAEMYSALREEDMWFGLWQKNAKHKETL 2375
+++ Q ++ A A+ E D W
Sbjct: 260 PGE-LRSYLKGATGH----------SQGLV--TA---VAIAETDSW-------------- 289
Query: 2376 YALAYEQQGFYEQALKAYEVTIKKGL---EEYANSPAPIS 2412
+ F+ KA V G+ E Y N+ P S
Sbjct: 290 -------ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPS 322
Score = 42.0 bits (98), Expect = 0.003
Identities = 52/315 (16%), Positives = 98/315 (31%), Gaps = 98/315 (31%)
Query: 901 FAETQGKSVVQVMEPHKDVLADIIP--PKKLLIRNHSANAQIGLMEGNTFCQSLTPRLFT 958
F +T G S + DI+ P L I G +G ++ + +F
Sbjct: 1653 FKDTYGFS-----------ILDIVINNPVNLTIHF-------GGEKGKRIRENYSAMIFE 1694
Query: 959 TDMSIHEHS-SFFQEI----TNICESSDQALMKL-----PCYKPISSLVPLRKAAMRALA 1008
T + + F+EI T+ S++ L+ P L + KAA L
Sbjct: 1695 TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPA------LTLMEKAAFEDLK 1748
Query: 1009 SWHYVPNCSQKIFNTLFA--------ALERPNPELQEAAF-QAMKTFVNGSPIDL----- 1054
S +P + FA AL A+ M + + +++
Sbjct: 1749 SKGLIPA------DATFAGHSLGEYAAL---------ASLADVM-SIESL--VEVVFYRG 1790
Query: 1055 KSVYEVMKPLLLTLGDYRNLNLVTARKLSYIVQPFPSSFSEKLCEQLLVNLKNLFENIVA 1114
++ + L +Y + A + F + + E++ L E IV
Sbjct: 1791 MTMQVAVPRDELGRSNYG----MIAINPGRVAASFSQEALQYVVERVGKRTGWLVE-IV- 1844
Query: 1115 QKENPPKNSETEKIIVVIIGIFKESPAAKAQFIEPLISLILENEHALSIGPYSPYREPLV 1174
N N E + V G + A ++ + + +L I ++
Sbjct: 1845 ---N--YNVENQ--QYVAAG---DLRA-----LDTVTN-VLNFIKLQKI--------DII 1880
Query: 1175 KYLLRYPTETLQSML 1189
+ E ++ L
Sbjct: 1881 ELQKSLSLEEVEGHL 1895
Score = 37.7 bits (87), Expect = 0.057
Identities = 61/357 (17%), Positives = 101/357 (28%), Gaps = 150/357 (42%)
Query: 566 NIRRSNGPAVVVHF-PEHQKTI--NLSVEKAIDVAITVLKNPAVDMFYRKQGWKVVKGYI 622
+I +N + +HF E K I N S M + +V G +
Sbjct: 1663 DIVINNPVNLTIHFGGEKGKRIRENYS-----------------AMIFE----TIVDGKL 1701
Query: 623 ISSMNLSD-NRSTIQKLFSHPSFGNTESSQGTMYKYADPTIRNTHQNALTGIFMVYLIKE 681
+ + N + F +G + T + T Q AL
Sbjct: 1702 KTEKIFKEINEHSTSYTFRSE--------KGLLSA----T-QFT-QPAL----------- 1736
Query: 682 LRKDSLLYTVLVVRHYTLVAITQQTGPFPLYGKSALLEGTMDPLVLIDAIAVILGH---E 738
++ A + L KS +G LI A A GH E
Sbjct: 1737 ----------TLME----KAAFED-----L--KS---KG------LIPADATFAGHSLGE 1766
Query: 739 DKELCKPGYIALKCIMETATCITG--SIENACNLPLMEYLAER--MCNLCYERAWYAKLG 794
Y AL + SIE+ + + R + R
Sbjct: 1767 --------YAAL-------ASLADVMSIESLVEV-----VFYRGMTMQVAVPRD--ELGR 1804
Query: 795 GCYAIKFFYNTMAIKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEARRNLKQLIVLCAT 854
Y + +AI G V++ EA + + + +
Sbjct: 1805 SNYGM------IAIN--------------------PGRVAASFSQEALQYVVERVGKRTG 1838
Query: 855 PIKEPV--DAETLTV----QSKALSEVTNEL----TRNITLPNDLLR-EQSMYLLQV 900
+ E V + E +AL VTN L + I D++ ++S+ L +V
Sbjct: 1839 WLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKI----DIIELQKSLSLEEV 1891
Score = 37.7 bits (87), Expect = 0.061
Identities = 24/137 (17%), Positives = 49/137 (35%), Gaps = 38/137 (27%)
Query: 26 YSTLADLVHHVRQLLPMSDLIKAVH---LFSKNI--HDET----------LPTTIH-TMS 69
Y+ LA + ++ + L++ V + + DE P + + S
Sbjct: 1767 YAALA----SLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFS 1822
Query: 70 CKLLLNLVDFI--RTKNQAEI-------EQGRI---GDNIGQELLERMLETMVLKFKTI- 116
+ L +V+ + RT EI +Q GD + + +L +K + I
Sbjct: 1823 QEALQYVVERVGKRTGWLVEIVNYNVENQQ--YVAAGDLRALDTVTNVLNF--IKLQKID 1878
Query: 117 -AKLQLPVLTAKAKTQL 132
+LQ + + + L
Sbjct: 1879 IIELQKSLSLEEVEGHL 1895
Score = 35.8 bits (82), Expect = 0.22
Identities = 58/304 (19%), Positives = 100/304 (32%), Gaps = 80/304 (26%)
Query: 1371 ELFKLA--LVSQELKAKILQLVLI--PCLTVCFERGEGDKLIG-GTGLPEDEDNKNANLV 1425
+++ A IL +V+ LT+ F GE K I E + L
Sbjct: 1644 DVWNRADNHFKDTYGFSILDIVINNPVNLTIHF-GGEKGKRIRENYSAMIFETIVDGKLK 1702
Query: 1426 NEFIAKIISPITESPPVFVISDNVRILLL----QMCCLIVEQSYHYVYNV--SQGKILVN 1479
E KI I E + +L Q ++E++ + S+G I +
Sbjct: 1703 TE---KIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKA---AFEDLKSKGLIPAD 1756
Query: 1480 KAKPLIMFAWQLSLLGKNFVDPATRYHGHLL-----LAHMIAK-FGVSQRVVVQVFL-GL 1532
FA GH L LA +A + V V VF G+
Sbjct: 1757 AT-----FA------------------GHSLGEYAALAS-LADVMSIESLVEV-VFYRGM 1791
Query: 1533 LRAHASEVRPIVRQALEILTPAF-PGRV--DDGQRMLLVYTKKILVEEGHSNPQLSHVLT 1589
A + R ++ A PGRV Q L +++ G ++
Sbjct: 1792 TMQVAVPRDELGRSNYGMI--AINPGRVAASFSQEALQYVVERVGKRTGW-------LVE 1842
Query: 1590 LIVKHYKVYYPVRHGLIQQMIAS-----MQRLGFSSSAMDHKKL-SVELADVIIKWELQR 1643
IV Y V QQ +A+ + + ++ ++ KL +++ ++ L+
Sbjct: 1843 -IVN-YNV--E---N--QQYVAAGDLRALDTV---TNVLNFIKLQKIDIIELQKSLSLEE 1890
Query: 1644 VKEE 1647
V+
Sbjct: 1891 VEGH 1894
Score = 35.0 bits (80), Expect = 0.42
Identities = 53/394 (13%), Positives = 98/394 (24%), Gaps = 201/394 (51%)
Query: 1512 AHMIAKFGVSQRVVVQVFLGLLRAHASEVRPIVRQALEILTPAFPGRVDDGQR-----ML 1566
H +G S + IV LT F G G+R
Sbjct: 1651 NHFKDTYGFS------------------ILDIVINNPVNLTIHFGGE--KGKRIRENYSA 1690
Query: 1567 LVY---------TKKILVEEG---------HSNPQLSHVLT------LIVKHYKVYYPVR 1602
+++ T+KI E LS T L + + ++
Sbjct: 1691 MIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLS--ATQFTQPALTLMEKAAFEDLK 1748
Query: 1603 -HGLIQQ--MIA--SMQRLG-FS-----SSAMDHKKLSVELADVIIKWEL--QRVKEEAE 1649
GLI A S LG ++ + M + ++ E+ R
Sbjct: 1749 SKGLIPADATFAGHS---LGEYAALASLADVMS-------IESLV---EVVFYR------ 1789
Query: 1650 GTSGGKAIQE-PPRKKMALESFA-----PGESSMKYDIPTASKPIEKVHADA-----VIN 1698
G +Q PR ++ ++ PG + + +E+V ++N
Sbjct: 1790 ----GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVN 1845
Query: 1699 FLARLSCQVSDLPPNLSSSMQSQVIQTPGEMLARRCVSLIRMALKPEVWSHQNTEFKLTW 1758
+ N+ + Q
Sbjct: 1846 Y-------------NVENQ---QY------------------------------------ 1853
Query: 1759 LDKVLSSIDQPTANLGNISIALELLTLLITILDEGQILHIIKPLQRGLVACISSSITKVI 1818
V + G++ AL+ +T +L+ IK + I
Sbjct: 1854 ---VAA---------GDLR-ALDTVT---------NVLNFIK--------------LQKI 1877
Query: 1819 RLVHALLCRLMSTFPTEPISSNVASKREELDHLY 1852
++ L + E + HL+
Sbjct: 1878 DII-----ELQKSLSLEEVE----------GHLF 1896
Score = 31.6 bits (71), Expect = 4.3
Identities = 24/121 (19%), Positives = 44/121 (36%), Gaps = 38/121 (31%)
Query: 110 VLKFKTIAKLQLPVLTAKAKT-QLALPAPELPSTTEDVKPVVNPQT-----------NLI 157
V+ +++ ++ + + T Q+A+P EL + + + NP ++
Sbjct: 1776 VMSIESLVEV----VFYRGMTMQVAVPRDELGRSNYGMIAI-NPGRVAASFSQEALQYVV 1830
Query: 158 DSPAKTTAG-VEKQKPKLGISNSPAANYNVNDCRSIVKILICG----VKTVTMGLAASKV 212
+ K T VE NYNV + + V G + TVT L K+
Sbjct: 1831 ERVGKRTGWLVE------------IVNYNVEN-QQYV---AAGDLRALDTVTNVLNFIKL 1874
Query: 213 N 213
Sbjct: 1875 Q 1875
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 38.4 bits (88), Expect = 0.008
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 17/42 (40%)
Query: 450 KQQMKDLFVELCLTVPVRLSSLLPYLPMLMD--PLVSALNGS 489
KQ +K L + +SL Y D P + A+ +
Sbjct: 19 KQALKKL--Q---------ASLKLYAD---DSAPAL-AIKAT 45
Score = 35.3 bits (80), Expect = 0.085
Identities = 9/32 (28%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Query: 2387 EQALKAYEVTIKKGLEEYANSPAP-ISHNSEL 2417
+QALK + ++K YA+ AP ++ + +
Sbjct: 19 KQALKKLQASLKL----YADDSAPALAIKATM 46
Score = 33.4 bits (75), Expect = 0.43
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 12/33 (36%)
Query: 2307 EKMAVEGLLKQNRMQNRAPSVADCYDFEPDHAP 2339
EK A++ L Q ++ Y D AP
Sbjct: 18 EKQALKKL--QASLK--------LY--ADDSAP 38
Score = 32.6 bits (73), Expect = 0.82
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 16/40 (40%)
Query: 2033 KNSELVTKLEPAFLSGLRC----SNPALRAKFFQLLNGSI 2068
K + + KL+ + L+ S PAL A + ++
Sbjct: 19 KQA--LKKLQ----ASLKLYADDSAPAL-A-----IKATM 46
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic
transport, nuclear trafficking, importin- beta, complex;
1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB:
2bku_B 3ea5_B* 3nd2_A
Length = 861
Score = 35.2 bits (80), Expect = 0.32
Identities = 28/251 (11%), Positives = 67/251 (26%), Gaps = 35/251 (13%)
Query: 306 DYMVDRMAHNYTLQVISNSFLVTRDTSP---VFATVLVEYLLEHMEEMGNGNVERSNLCL 362
D + + + L + + L+ P + + L+E + E + +
Sbjct: 440 DSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEA-TPSPIYNFYPA 498
Query: 363 KLFKLVFGSVSFYPAENEHMLRPHLHQIVNRSMELAMTAKEPYNYFLLLRALFRSIGGGS 422
+ L+ + +NE R + +E A
Sbjct: 499 LVDGLIG---AANRIDNEFNARASAFSALTTMVEYATDTVAET----------------- 538
Query: 423 HDLLYQEFLPLLRNLLQGLNSLQSGLHKQQMKDLFVELCLTVPVRLSSL----LPYLPML 478
+ + L + + + Q +++L + + + P ML
Sbjct: 539 SASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADML 598
Query: 479 MDPLVSALN--GSSTLISQGLRTLELCVDNLQPDFLYDHIQPVRADLMQALWRSLRSPNE 536
M L S+ + + +L F + L ++L +
Sbjct: 599 MGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGF-----EKYLETFSPYLLKALNQVDS 653
Query: 537 QVAHVAYRVLG 547
V+ A +
Sbjct: 654 PVSITAVGFIA 664
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 34.1 bits (78), Expect = 0.63
Identities = 15/87 (17%), Positives = 23/87 (26%), Gaps = 10/87 (11%)
Query: 2314 LLKQNRMQNRAPSVADCYDFEPDHAPQQQDIIDQLAEMYSALREEDMWFGLWQK----NA 2369
L +V P H + + +L + + L Q+
Sbjct: 33 ELGMGDTTAGEMAVQRGLALHPGHP----EAVARLGRVRWTQQRHAEAAVLLQQASDAAP 88
Query: 2370 KHKETLYALA--YEQQGFYEQALKAYE 2394
+H L E G E A AY
Sbjct: 89 EHPGIALWLGHALEDAGQAEAAAAAYT 115
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Length = 472
Score = 33.8 bits (77), Expect = 0.76
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Query: 2366 QKNAKHKETLYALA--YEQQGFYEQALKAYEVTIKKGLEEYANSPAPISHN 2414
KN E L+ LA E +QA + E +GLE + P+ S N
Sbjct: 424 SKNGADSEALHVLAFLQELNEKMQQADEDSE----RGLESGSLIPSASSWN 470
Score = 30.7 bits (69), Expect = 7.6
Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 2357 EEDMWFGLWQKNAKHKETLY---ALAYEQQGFYEQALKAYEVTIKKGLEEYANSPAP 2410
E+ +++ +N + K T+ A +G E AL+ + +E+A+
Sbjct: 35 EDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEI 91
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat,
type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 31.8 bits (72), Expect = 1.2
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 2368 NAKHKETLYALAYE--QQGFYEQALKAYEVTIK 2398
++ E LY+LA+ Q G YE A ++
Sbjct: 17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCV 49
>3laz_A D-galactarate dehydratase; structural genomics, PSI-2, protein
structure initiative, midwest center for structural
genomics, MCSG; 1.92A {Escherichia coli}
Length = 99
Score = 30.5 bits (69), Expect = 1.8
Identities = 7/38 (18%), Positives = 13/38 (34%), Gaps = 5/38 (13%)
Query: 1660 PPRKKMALESFAPGESSMKYDIP--TASKPIEK---VH 1692
P K+AL ++Y A + I + +
Sbjct: 53 PQGHKVALLDIPANGEIIRYGEVIGYAVRAIPRGSWID 90
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR),
beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos
taurus}
Length = 291
Score = 32.4 bits (73), Expect = 1.9
Identities = 22/112 (19%), Positives = 38/112 (33%), Gaps = 16/112 (14%)
Query: 2298 LWHRVTLSLEKMAVEGLLKQNRMQNRAPSVADCYDFEPDHAPQQ--------QDIIDQLA 2349
L +L M V+ LLK +R+ + D + D Q ++L
Sbjct: 124 LHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQ 183
Query: 2350 EMYSALREEDMWFGLWQKNAKHKETLYALA--YEQQGFYEQALKAYEVTIKK 2399
+ Y +E + K + L A + QG +E A + + K
Sbjct: 184 DAYYIFQE------MADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal,
ribosomal R ribosomal protein, eukaryotic ribosome,
RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB:
3izb_U* 3j16_D 3u5g_Y
Length = 135
Score = 31.1 bits (70), Expect = 1.9
Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 8/91 (8%)
Query: 2316 KQNRMQNRAPSVADCYDFEPDHAPQQQDIIDQLAEMYSALREEDMWFGLWQKNAKHKETL 2375
N + R V D + ++ ++LAE+Y A ++ FG + K
Sbjct: 13 ISNPLLARKQFVVDV-LHPNRANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVG 71
Query: 2376 YALAYEQQGFYEQALKAYE---VTIKKGLEE 2403
+ L Y K +E ++ GL E
Sbjct: 72 FGLVYNS----VAEAKKFEPTYRLVRYGLAE 98
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.7 bits (71), Expect = 2.1
Identities = 16/92 (17%), Positives = 37/92 (40%), Gaps = 18/92 (19%)
Query: 2123 ISSVISLAEDPVE-----RENYFNVVLNAADLKTEPNLNGENILESLEEYEFDVDEFGNC 2177
I+ L ++P E RE L D ++ E E+ + D++E+
Sbjct: 74 IAQADRLTQEP-ESIRKWREE-QRKRLQELDAASK-----VMEQEWREKAKKDLEEWNQR 126
Query: 2178 RIQQLSREDLLNKQN--KFLENAREYNTSDLL 2207
+ +Q+ + + N+ F + + +D++
Sbjct: 127 QSEQVEKNKINNRIADKAFYQQ-PD---ADII 154
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR
{Thermoplasma acidophilum} SCOP: d.12.1.3
Length = 98
Score = 30.1 bits (68), Expect = 2.6
Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 8/91 (8%)
Query: 2316 KQNRMQNRAPSVADCYDFEPDHAPQQQDIIDQLAEMYSALREEDMWFGLWQKNAKHKETL 2375
+ N + R F+ P +++I + +A+ +E + Q KH+
Sbjct: 9 RDNPILKRKEIKYVL-KFDSSRTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEG 67
Query: 2376 YALAYEQQGFYEQALKAYE---VTIKKGLEE 2403
Y Y + + YE I+ GL++
Sbjct: 68 YTKIYAD----KPSAMLYEPDYELIRNGLKQ 94
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A
{Pyrococcus abyssi} SCOP: d.12.1.3
Length = 107
Score = 30.2 bits (68), Expect = 2.7
Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 5/79 (6%)
Query: 2316 KQNRMQNRAPSVADCYDFEPDHAPQQQDIIDQLAEMYSALREEDMWFGLWQKNAKHKETL 2375
K+N++ R + + P ++D+ +L M E + + +K
Sbjct: 17 KENKLIGRKEIYFEI-YHPGEPTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKG 75
Query: 2376 YALAYEQQGFYEQALKAYE 2394
YA Y + + E
Sbjct: 76 YAKYYYD----KDRMLYIE 90
>2atr_A Acetyltransferase, GNAT family; MCSG, structural genomics, PSI,
protein structure INIT midwest center for structural
genomics; 2.01A {Streptococcus pneumoniae} SCOP:
d.108.1.1
Length = 138
Score = 30.2 bits (68), Expect = 3.8
Identities = 10/61 (16%), Positives = 25/61 (40%), Gaps = 10/61 (16%)
Query: 575 VVVHFPEHQKT------INLSVEKAID---VAITVLKNPAVDMFYRKQGWKVVKGYIISS 625
++V P +Q+ + ++ + V + + FYR G++++ Y +
Sbjct: 72 LIVL-PSYQRQGIGSSLMKEALGNFKEAYQVQLATEETEKNVGFYRSMGFEILSTYDCTG 130
Query: 626 M 626
M
Sbjct: 131 M 131
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, protein binding, chaperone; 1.90A {Homo sapiens}
SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Length = 131
Score = 30.0 bits (68), Expect = 4.1
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 2377 ALAYEQQGFYEQALKAYEVTIKKGLEEYANSPAPIS-HNSELRLREKQWL 2425
+Y ++ Y+ A+ Y K L E+ +E L+E++ L
Sbjct: 86 GNSYFKEEKYKDAIHFYN----KSLAEHRTPDVLKKCQQAEKILKEQERL 131
>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative
II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus
thuringiensis str}
Length = 171
Score = 30.5 bits (69), Expect = 4.7
Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 10/91 (10%)
Query: 2115 EETGVLPNISSVISLAEDPVERENYFNVVLNAADLKTEPNLNGENILESLEEYEFDVDEF 2174
EETG+ I ++ + + P + ++ ++ E L E DV
Sbjct: 71 EETGLEVKIKKLLYVCDKPDASPSLLHITFLLERIEGEITLPSN---EFDHNPIHDVQMV 127
Query: 2175 GNCRIQQLS----REDLLNKQNKFLENAREY 2201
I +LS E +N + L NA Y
Sbjct: 128 ---PINELSYYGFSETFINLISGGLANAGSY 155
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90,
heat shock protein, ATP-binding, heat shock,
nucleotide-binding, acetylation; HET: ATP; 3.1A
{Saccharomyces cerevisiae}
Length = 677
Score = 30.9 bits (70), Expect = 6.6
Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 15/81 (18%)
Query: 220 PTTPPFGQFQPKDTKVYIRL-VKWALKALDVYTLNPS---------SSSLLPNNLQRTPL 269
P PF F+ K K I+L V+ + L P S LP NL R L
Sbjct: 324 PKRAPFDLFESKKKKNNIKLYVRRVFITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREML 383
Query: 270 QQAS-----RTKEEKEVLEHF 285
QQ R K+++E F
Sbjct: 384 QQNKIMKVIRKNIVKKLIEAF 404
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_P
Length = 149
Score = 29.6 bits (66), Expect = 7.3
Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 5/79 (6%)
Query: 2316 KQNRMQNRAPSVADCYDFEPDHAPQQQDIIDQLAEMYSALREEDMWFGLWQKNAKHKETL 2375
N + +R D ++ I ++LA+ + +G + K T
Sbjct: 11 LVNPLLSRRQLSLDV-LHPDSPTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTG 69
Query: 2376 YALAYEQQGFYEQALKAYE 2394
+AL Y+ +Q L YE
Sbjct: 70 FALVYDN----QQYLLKYE 84
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear
import, heat motif, NLS-binding; 2.30A {Homo sapiens}
SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A
2qna_A
Length = 876
Score = 30.6 bits (68), Expect = 7.5
Identities = 36/206 (17%), Positives = 61/206 (29%), Gaps = 53/206 (25%)
Query: 383 LRPHLHQIVNRSMELAMTAKEPYNYFL--LLRALFRSIGGGSHDL------LYQEFLPLL 434
L IV + +E N +L + + D + L
Sbjct: 499 LSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERL 558
Query: 435 RNLLQGLNSLQSGLHKQQMKDLFVELCLTVPVRLSSL-----LPYLPMLMDPLVSALN-- 487
+ +LQ + +QS + Q DL LC T+ L + L ++M L+
Sbjct: 559 QQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQST 618
Query: 488 -GSSTLISQGLRTLELCVDNLQPDF----------------------------------- 511
GS + L + V+ L +F
Sbjct: 619 AGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLC 678
Query: 512 --LYDHIQPVRADLMQALWRSLRSPN 535
L +I P ++MQ L +L + N
Sbjct: 679 RALQSNIIPFCDEVMQLLLENLGNEN 704
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat,
micro plus END, +TIP, protein binding; 2.10A {Drosophila
melanogaster}
Length = 242
Score = 30.0 bits (67), Expect = 9.3
Identities = 27/227 (11%), Positives = 74/227 (32%), Gaps = 42/227 (18%)
Query: 872 LSEVTNELTRNITLPNDLLREQSMYLLQVFAETQGKSVVQVMEPHKDVLADIIPP-KKLL 930
LS++ + + LR++S+ +L+ K L +I ++
Sbjct: 13 LSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVV 72
Query: 931 IRNHSANAQIGLMEG-----NTFCQSLTPRLFTTDMSIHEHSSFFQEITNICESSDQALM 985
+ + L +G + + + P L F ++ N+ + +A+
Sbjct: 73 LVAMAGKCLALLAKGLAKRFSNYASACVPSLLEK---------FKEKKPNVVTALREAID 123
Query: 986 KLPCYKPISSLVP------------LRKAAMRALASW-------HYVPNCSQKIFNTLFA 1026
+ + + ++ +A + + +L
Sbjct: 124 AIYASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVK 183
Query: 1027 ALERPNPELQEAAFQAMKTFVNGSPIDLKSVYE-VMKPLLLTLGDYR 1072
L P+P +++++ +A+ T + K + + + PLL + +
Sbjct: 184 TLNEPDPTVRDSSAEALGTLI-------KLMGDKAVTPLLADVDPLK 223
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella flexneri}
PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 29.4 bits (66), Expect = 9.4
Identities = 7/61 (11%), Positives = 21/61 (34%), Gaps = 5/61 (8%)
Query: 2340 QQQDIIDQLAEMYSALREEDMWFGLWQKNAKHKETLYALAYE--QQGFYEQALKAYEVTI 2397
+ + I + + ++ + + +Y+ AY+ +G E+A +
Sbjct: 7 ENESISTAVIDAINSGATLKDINAI---PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLC 63
Query: 2398 K 2398
Sbjct: 64 I 64
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.396
Gapped
Lambda K H
0.267 0.0585 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 36,470,108
Number of extensions: 2257909
Number of successful extensions: 4578
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4523
Number of HSP's successfully gapped: 66
Length of query: 2426
Length of database: 6,701,793
Length adjustment: 109
Effective length of query: 2317
Effective length of database: 3,658,404
Effective search space: 8476522068
Effective search space used: 8476522068
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 66 (29.5 bits)