RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5930
(2426 letters)
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1
(Tip120) {Human (Homo sapiens) [TaxId: 9606]}
Length = 1207
Score = 45.9 bits (107), Expect = 7e-05
Identities = 122/1060 (11%), Positives = 301/1060 (28%), Gaps = 66/1060 (6%)
Query: 1014 PNCSQKIFNTLFAALERPNPELQEAAFQAMKTFVN-GSPIDLKSVYEVMKPLLLTLGDYR 1072
+ +K+ + LE N E+Q A + + V+ ++++ + + +L+ D
Sbjct: 40 DDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLS--DKE 97
Query: 1073 NLNLVTARKLSYIVQPFPSSFSEKLCEQLLVNLKNLFENIVAQKENPPKNSETEKIIVVI 1132
L +++ L ++ P + S + K + + + S + + ++
Sbjct: 98 QLRDISSIGLKTVIGELPPASSGSALAANV--CKKITGRLTSAIAKQEDVSVQLEALDIM 155
Query: 1133 IGIFKESPAAKAQFIEPLISLILEN-------------------EHALSIGPYSPYREPL 1173
+ F +++ +L + + E L
Sbjct: 156 ADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHL 215
Query: 1174 VKYLLRYPTETLQS----MLSEIHMKDPLWRNFFVYLIKHQEGKCFRDALQTQFVDRLIL 1229
+ L + + + ++ I + ++ I K D L
Sbjct: 216 LSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVD-----DDELRE 270
Query: 1230 YTFSAINPNCTNLTTAEKLEMQYIGIRLVSILIKLDTKWLSSQNQLISVMQKIWCDDEYL 1289
Y A + I + L +++ + M DD+
Sbjct: 271 YCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQ 330
Query: 1290 QRHRNVENISYVHWKEPKLLVKILLHYFSHHRHIIDLLFFILRAVTERLLPDFTFLREFL 1349
+ + WK + K L S +L + V+ L+ F E +
Sbjct: 331 GSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHE---MLPEFYKTVSPALISRFKEREENV 387
Query: 1350 ETTVAQTYSIEWKRKAFLRFLELFKLALVSQELKAKILQLVL---IPCLTVCFERGEGDK 1406
+ V Y K+ ++ A+ E +LQ + + L +
Sbjct: 388 KADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKT 447
Query: 1407 LIGGTGLPEDEDNKNANLVNEFIAKIISPITESPPVFVISDNVRILLLQMCCLIVEQSYH 1466
+ + N + + I ++ I S S N++I L +I+
Sbjct: 448 RQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSP 507
Query: 1467 YVYNVSQGKILVNKAKPLIMFAWQLSLLGKNFVDPATRYHGHLLLAHMIAKFGVSQRVVV 1526
V++ ++ + ++++ + L + +
Sbjct: 508 QVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFT 567
Query: 1527 QVFLGLLRAHA-SEVRPIVRQALEILTPAFPGRVDDGQRMLLVYTKKILVEEGHSNPQLS 1585
L A EV+ + + + L + L E +
Sbjct: 568 CTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVK 627
Query: 1586 HVLTLIVKHYKVYY-PVRHGLIQQMIASMQRLGFSSSAMDHKKLSVELADVIIKWELQRV 1644
+ + K+ PV + + + +++ + L + + + +
Sbjct: 628 ALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMI 687
Query: 1645 KEEAEGTSGGKAIQEPPRKKMALESFAPGESSMKYDIPTASKPIEKVHADAVINFLARLS 1704
+ + + +MA+ + S I + L R
Sbjct: 688 DAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILN-----ELIGLVRSP 742
Query: 1705 CQVSDLPPNLSSSMQSQVIQTPGEMLARRCVSLIRMALKPEVWSHQNTEFKLTWLDKVLS 1764
+ Q+ V+ + + ++ + + + + + + K ++
Sbjct: 743 LLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQS-YYSIAKCVA 801
Query: 1765 SIDQPTANLGNISIALELLTLLITILDEGQILHIIKPLQRGLVACISSSITKVIRLVHAL 1824
++ + G + + + + + L + L S ++ ++
Sbjct: 802 ALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEA 861
Query: 1825 LCRLMSTFPTEPISSNVASKREELDHLYVC-VSKVIYEGLSNYEKNPTATCSTLYGTVMM 1883
P+E + S + L + V + + + L P L+ +
Sbjct: 862 FSS-----PSEEVKSAAS---YALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEI 913
Query: 1884 LKAACMNHPAYVDRFILEFMRVIQRMAREHIATSTADAPQQVGGELLIYCLDLVKTRFCS 1943
+ +A + I + A E A+ ++ L +K S
Sbjct: 914 ISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLIS 973
Query: 1944 MSQETRKQFIGTIILGLIDKTPDIK-VMKAIIKMTEEWLKVNKVEQNNVPNLKEKCIILV 2002
S R + + + D I ++K I + L P+L + + LV
Sbjct: 974 GSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTL--------EDPDLNVRRVALV 1025
Query: 2003 KLMHFVEKRFPDLNTMFLEIVLYVYMDENLKNSELVTKLE 2042
+ P L L+ VL +E EL+ ++E
Sbjct: 1026 TFNSAAHNK-PSLIRDLLDTVLPHLYNETKVRKELIREVE 1064
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 861
Score = 39.4 bits (90), Expect = 0.005
Identities = 71/647 (10%), Positives = 177/647 (27%), Gaps = 43/647 (6%)
Query: 422 SHDLLYQEFLPLLRNLLQGLNSLQSGLHKQQMKDLFVELCLTVPVRLSSLLPYLPMLMDP 481
+L + + L++ ++ + Q K+ +C + + +L+ ++
Sbjct: 124 DIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIA 183
Query: 482 LVSALNGSSTLISQGLRTLELCVDNLQPDFLYDHIQPVRADLMQALWRSLRSPNEQVAHV 541
+V + T + L L D+L + R LMQ + + ++ + +V
Sbjct: 184 IVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAA 243
Query: 542 AYRVLGKFGGGNRKMMIEPQKLDYNIRRSNGPAVVVHFPEHQKTINLSVEKAIDVAITVL 601
A+ L K M + + ++ + + +
Sbjct: 244 AFGCLCKI------MSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEE 297
Query: 602 KNPAVDMFYRKQGWKVVKGYIISSMNLSDNRSTIQKLFSHPSFGNTESSQGTMYKYADPT 661
+ A ++ Q + +SS+ + + P+ N + Q + D
Sbjct: 298 IDIAYELAQFPQSPLQSYNFALSSI---------KDVV--PNLLNLLTRQNEDPEDDDWN 346
Query: 662 IRNTHQNALTGIFMVYLIKELRKDSLLYTVLVVRHYTLVAITQQTGPFPLYGKSALLEGT 721
+ + L L + ++ +
Sbjct: 347 VSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNW---RNREAAVMAFGSIMDGPDKV 403
Query: 722 MDPLVLIDAIAVILGHEDKELCKPGYIALKCIMETATCITGSIENACNLPLMEYLAERMC 781
+ A+ IL + + + CI A + SI+ +LP +
Sbjct: 404 QRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGL 463
Query: 782 NLCYERAWYAKLGGCYAIKFFYNTMAIKWVYSHMFVFVKALLFVMMDLTGEVSSGAIDEA 841
+ A ++ + + + + + A
Sbjct: 464 QDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSA 523
Query: 842 RRNLKQLIVLCATPIKEPVDAETLTVQSKALSEVTNELTRNITLPNDLLREQSMYLLQVF 901
+ + + + + +S N+LT L QS+ LQ
Sbjct: 524 LTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLT--------LEDAQSLQELQSN 575
Query: 902 AETQGKSVVQVMEPHKDVLADIIPPKKLLIRNHSANAQIGLMEGNTFCQSLTPRLFTTDM 961
T +V++ + +AD++ + +A I + +++ +
Sbjct: 576 ILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFI----EDDVFYAISALAASLGK 631
Query: 962 SIHEHSSFFQEITNICESSDQALMKLPCYKPISSLVPLRKAAMRALASWHYVPNCSQKIF 1021
++ F + + + + I+ + + R S +
Sbjct: 632 GFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFR---------RYSDAMM 682
Query: 1022 NTLFAALERPN--PELQEAAFQAMKTFVNGSPIDLKSVYEVMKPLLL 1066
N L + PN EL+ A + D + L +
Sbjct: 683 NVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCV 729
>d2bw3a2 c.55.3.12 (A:163-609) Transposase Hermes, catalytic domain
{House fly (Musca domestica) [TaxId: 7370]}
Length = 447
Score = 35.4 bits (80), Expect = 0.093
Identities = 30/248 (12%), Positives = 68/248 (27%), Gaps = 14/248 (5%)
Query: 1194 MKDPLWRNFFVYLIKHQEGKCFRDALQTQFVDRLILYTFSAINPNCTNLTTAEKLEMQYI 1253
+ L N + H ++ + + A A
Sbjct: 91 VVKSLANNIRINCSSHLLSNVLENSFEET---PELNMPILACKNIVKYFKKANLQHRLRS 147
Query: 1254 GIRLVSILIKLDTKWLSSQNQLISVMQKIWCDDEYLQRHRNVENISYVHWKEPKLLVKIL 1313
++ T+W S+ L S++ + L + I +++ + +V IL
Sbjct: 148 SLKSEC-----PTRWNSTYTMLRSILDNWESVIQILSEAGETQRIVHINKSIIQTMVNIL 202
Query: 1314 LHYFSHHRHIIDLLFFILRAVTERLLPDFTFLREFLETTVAQTYSIEWKRKAFLRFLELF 1373
I L ++P ++E V I + ++ + +
Sbjct: 203 ----DGFERIFKELQTCSSPSLCFVVPSILKVKEICSPDVGDVADIAKLKVNIIKNVRII 258
Query: 1374 KLALVSQELKAKILQLVLIPCLTVCFERGEGDKLIGGTGLPEDEDNKNANLVNEFIAKII 1433
+S P L + E+ K + + + E + NE A +
Sbjct: 259 WEENLSIWHYTAF--FFYPPALHMQQEKVAQIKEFCLSKMEDLELINRMSSFNELSATQL 316
Query: 1434 SPITESPP 1441
+ +
Sbjct: 317 NQSDSNSH 324
>d1ywxa1 d.12.1.3 (A:1-102) Ribosomal protein S24e {Methanococcus
maripaludis [TaxId: 39152]}
Length = 102
Score = 30.0 bits (68), Expect = 0.96
Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 9/91 (9%)
Query: 2316 KQNRMQNRAPSVADCYDFEPDHAPQQQDIIDQLAEMYSALREEDMWFGLWQKNAKHKETL 2375
+ N + R P +D+ +L + +A ++ + L Q K +
Sbjct: 9 RNNPLLQRREIKFTVS--FDAATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEG 66
Query: 2376 YALAYEQQGFYEQALKAYE---VTIKKGLEE 2403
YA Y E+A+ E V K +EE
Sbjct: 67 YAKIYND----EKAMATIETKSVLEKNKIEE 93
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 31.7 bits (71), Expect = 1.5
Identities = 52/457 (11%), Positives = 122/457 (26%), Gaps = 87/457 (19%)
Query: 964 HEHSSFFQEITNICESSDQALMKLPCYKPISSLVPLRKAAMRALASWHYVPNCSQKIFNT 1023
H+ E N+ S+ ++ Y IS L + + I N
Sbjct: 62 HDIDFGHMEAVNLLSSNRYTEKQI-GYLFISVL-------------VNSNSELIRLINNA 107
Query: 1024 LFAALERPNPELQEAAFQAMKTFVNGSPIDLKSVYEVMKPLLLTLGDYRNLNLVTARK-- 1081
+ L NP A + + + + + E + + + +
Sbjct: 108 IKNDLASRNPTFMGLALHCI------ANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAA 161
Query: 1082 --LSYIVQPFPSSFSEKLCEQLLVNLKNLFENIVAQKENPPKNSETEKIIVVIIGIFKES 1139
L + + P +V+L N V +I + +++
Sbjct: 162 LCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVT-----------AATSLITTLAQKN 210
Query: 1140 PAAKAQFIEPLISLILE---------NEHALSIGPYSPYREPLVKYLLRYP-------TE 1183
P + +S + ++ P L++ L YP
Sbjct: 211 PEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRG 270
Query: 1184 TLQSMLSEIHMKDPLWRNFFVYLIKHQEGKCFRDALQTQFVDRLILYTFSAINPNCTNLT 1243
L L I K + + +A+
Sbjct: 271 RLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFL 330
Query: 1244 TAEKLEMQYIGIRLVSILIKLDTKWLSSQNQLISVMQKIWCDDEY---------LQRHRN 1294
+ ++Y+ + + L + + + + +V+ + + + L +
Sbjct: 331 QHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCD 390
Query: 1295 VENISYVHWKEPKLLVKILLHYFSH-HRHIIDLLFFILRAVTERLLPDFTFLREFLETTV 1353
N + +V +L Y I + + + + E+ D+
Sbjct: 391 RSNA--------QQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDY----------- 431
Query: 1354 AQTYSIEWKRKAFLRFLELFKLALVSQELKAKILQLV 1390
W L + + VS+E+ +++Q+V
Sbjct: 432 ------TWYVDTILNLIRI-AGDYVSEEVWYRVIQIV 461
>d2g1da1 d.12.1.3 (A:1-98) Ribosomal protein S24e {Thermoplasma
acidophilum [TaxId: 2303]}
Length = 98
Score = 28.9 bits (65), Expect = 1.8
Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 8/91 (8%)
Query: 2316 KQNRMQNRAPSVADCYDFEPDHAPQQQDIIDQLAEMYSALREEDMWFGLWQKNAKHKETL 2375
+ N + R F+ P +++I + +A+ +E + Q KH+
Sbjct: 9 RDNPILKRKEIKYVLK-FDSSRTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEG 67
Query: 2376 YALAYEQQGFYEQALKAYE---VTIKKGLEE 2403
Y Y + + YE I+ GL++
Sbjct: 68 YTKIYAD----KPSAMLYEPDYELIRNGLKQ 94
>d1xn9a_ d.12.1.3 (A:) Ribosomal protein S24e {Methanosarcina mazei
[TaxId: 2209]}
Length = 101
Score = 28.9 bits (65), Expect = 2.1
Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 6/79 (7%)
Query: 2316 KQNRMQNRAPSVADCYDFEPDHAPQQQDIIDQLAEMYSALREEDMWFGLWQKNAKHKETL 2375
K+N + NR P + D+ ++LA M +A E + + + +
Sbjct: 9 KKNPLLNRRELDFIVK--YEGSTPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKG 66
Query: 2376 YALAYEQQGFYEQALKAYE 2394
YA YE +K E
Sbjct: 67 YAKLYED----ADRMKQVE 81
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId:
562]}
Length = 259
Score = 30.2 bits (66), Expect = 3.1
Identities = 15/133 (11%), Positives = 33/133 (24%), Gaps = 3/133 (2%)
Query: 2275 LAHCNPPLPIKPAIMTYLGKAQGL-WHRVTLSLEKMAVEGLLKQNRMQNRAPSVADCYDF 2333
L + SL E L + + + + D
Sbjct: 111 RGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK 170
Query: 2334 EPDHAPQQQDIIDQLAEMYSALREEDMWFGLWQKNAKHKETLYALA--YEQQGFYEQALK 2391
E + + ++E R + ET + L Y G + A
Sbjct: 171 EQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATA 230
Query: 2392 AYEVTIKKGLEEY 2404
+++ + + +
Sbjct: 231 LFKLAVANNVHNF 243
>d2v94a1 d.12.1.3 (A:1-93) Ribosomal protein S24e {Pyrococcus abyssi
[TaxId: 29292]}
Length = 93
Score = 28.1 bits (63), Expect = 3.2
Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 5/79 (6%)
Query: 2316 KQNRMQNRAPSVADCYDFEPDHAPQQQDIIDQLAEMYSALREEDMWFGLWQKNAKHKETL 2375
K+N++ R + Y + P ++D+ +L M E + + +K
Sbjct: 9 KENKLIGRKEIYFEIY-HPGEPTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKG 67
Query: 2376 YALAYEQQGFYEQALKAYE 2394
YA Y + + E
Sbjct: 68 YAKYYYD----KDRMLYIE 82
>d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module
{Human (Homo sapiens) [TaxId: 9606]}
Length = 139
Score = 29.2 bits (65), Expect = 3.5
Identities = 8/49 (16%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 2132 DPVERENYFNVVLNAADLKTEPNLNGENILESLEEYEFDVDE-FGNCRI 2179
+ ++Y+ ++ DL+T + + S EE+ ++ N
Sbjct: 52 NAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSAT 100
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1
(PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}
Length = 323
Score = 29.8 bits (65), Expect = 4.6
Identities = 19/261 (7%), Positives = 53/261 (20%), Gaps = 13/261 (4%)
Query: 2159 NILESLEEYEFDVDEFGNCRIQQLSREDLLNKQNKFLENAREYNTSDLLVSLAQLCHLDT 2218
++ ++ +E V + + + L D
Sbjct: 34 DLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRR-------CLELKPDN 86
Query: 2219 HLAEKVWLDMFPQMWSILSETQQQNLTDEIIPFIVSGIHVVQKDVHPSSINTIYESLAHC 2278
A F + P + ++ + + L
Sbjct: 87 QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSL 146
Query: 2279 NPPLPIKPAIMTYLGKAQGLWHRVTLSLEKMAVEGLLKQNRMQNRAPSVADCYDFEPDHA 2338
+L + + ++ P+
Sbjct: 147 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDY 206
Query: 2339 PQQQDIIDQLAEMYSALREEDMWFGLWQKNAKHKETLYAL--AYEQQGFYEQALKAYEVT 2396
+ LA + + + + + Y L + G + +A++ +
Sbjct: 207 LLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFL-- 264
Query: 2397 IKKGLEEYANSPAPISHNSEL 2417
+ L S P +
Sbjct: 265 --EALNMQRKSRGPRGEGGAM 283
>d1bama_ c.52.1.3 (A:) Restriction endonuclease BamHI {Bacillus
amyloliquefaciens [TaxId: 1390]}
Length = 213
Score = 28.8 bits (64), Expect = 6.6
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Query: 2235 ILSETQQQNLTDEIIPFIVSGI-HVVQKDVHP--SSINTIYESLAHCNPPLPIKPAIMTY 2291
I E ++ D++I + + + + P S TI + +CN +PIK T
Sbjct: 8 ITDEAKELLSKDKLIQQAYNEVKTSICSPIWPATSKTFTINNTEKNCNGVVPIKELCYTL 67
Query: 2292 LGKAQGLWHR 2301
L W+R
Sbjct: 68 LEDTYN-WYR 76
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}
Length = 128
Score = 27.9 bits (61), Expect = 7.5
Identities = 12/92 (13%), Positives = 30/92 (32%), Gaps = 5/92 (5%)
Query: 2318 NRMQNRAPSVADCYDFEPDHAPQQQDIIDQLAEMYSALREEDMWFGLWQKNAKHKETLYA 2377
++ + P+ + ++ D A+ +++ AK +
Sbjct: 28 DKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI-G 86
Query: 2378 LAYEQQGFYEQALKAYEVTIKKGLEEYANSPA 2409
+Y ++ Y+ A+ Y K L E+
Sbjct: 87 NSYFKEEKYKDAIHFYN----KSLAEHRTPDV 114
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human
(Homo sapiens) [TaxId: 9606]}
Length = 388
Score = 29.3 bits (64), Expect = 7.5
Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 6/86 (6%)
Query: 2319 RMQNRAPSVADCYDFEPDHAPQQQDIIDQLAEMYSALREEDMWFGLWQK----NAKHKET 2374
+ + DCY+ P D ++ LA + + L++K +
Sbjct: 282 KEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA 341
Query: 2375 LYALA--YEQQGFYEQALKAYEVTIK 2398
LA +QQG ++AL Y+ I+
Sbjct: 342 HSNLASVLQQQGKLQEALMHYKEAIR 367
>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment
{Human (Homo sapiens) [TaxId: 9606]}
Length = 579
Score = 29.0 bits (64), Expect = 9.3
Identities = 51/416 (12%), Positives = 117/416 (28%), Gaps = 56/416 (13%)
Query: 955 RLFTTDMSIHEHSSFFQEITNICESSDQALMKLPCYKPISSLVPLRKAAMRALASWHYVP 1014
++ + SS F ++ N ++ + L KL Y + + + P
Sbjct: 33 KVIAAMTVGKDVSSLFPDVVNCMQTDNLELKKL-VYLYLMNYAKSQ-------------P 78
Query: 1015 NCSQKIFNTLFAALERPNPELQEAAFQAMKTFVNGSPIDLKSVYEVMKPLLLTLGDYRNL 1074
+ + N+ E PNP ++ A + M I + + E + L +
Sbjct: 79 DMAIMAVNSFVKDCEDPNPLIRALAVRTM------GCIRVDKITEYLCEPLRKCLKDEDP 132
Query: 1075 NLVTARKLSYIVQPFPSSFSEKLCEQLLVNLKNLFENIVAQKENPPKNSETEKIIVVIIG 1134
V + + + + L +L++L + NP + +
Sbjct: 133 Y-VRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIAD-----SNP---MVVANAVAALSE 183
Query: 1135 IFKESPAAKAQFIEPLISLILENEHALSIGPYSPYREPLVKYLLRYPTETLQSMLSEIHM 1194
I + P + + L + + ++ L Y + + S
Sbjct: 184 ISESHPNS---NLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICER 240
Query: 1195 KDPLWRNFFVYLIKHQEGKCFRDALQTQFVDRLILYTFSAINPNCTNLTTAEKLEMQYIG 1254
P + ++L + L +
Sbjct: 241 VTPRLSHAN---------------------SAVVLSAVKVLMKFLELLPKDSDYYNMLLK 279
Query: 1255 IRLVSILIKLDTKWLSSQNQLISVMQKIWCDDEYLQRHRNVENISYVHWKEPKLLVKILL 1314
++ L + L ++ + E L++ V + Y KL ++
Sbjct: 280 KLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIM 339
Query: 1315 HYFSHHRHIIDLLFFILRAVTERLLPDFTFLREFLETTVAQTYSIEWKRKAFLRFL 1370
+ +I +L + TE D F+R+ + +E + + L
Sbjct: 340 IRLASQANIAQVLAELKEYATE---VDVDFVRKAVRAIGRCAIKVEQSAERCVSTL 392
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 290
Score = 28.4 bits (62), Expect = 10.0
Identities = 15/140 (10%), Positives = 37/140 (26%), Gaps = 4/140 (2%)
Query: 2272 YESLAHCNPPLPIKP-AIMTYLGKAQGLWHRVTLSLEKMAVEGLLKQNRMQNRAPSVADC 2330
+ A + A TY+ + ++E ++ + + A+
Sbjct: 60 FLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119
Query: 2331 YDFEPDHAPQQQDIIDQLAEMYSALREEDMWFGLWQKNAKHKETL-YALAYEQQGFYEQA 2389
+ + + Y + + +K + A G Y +A
Sbjct: 120 KFELGEILENDLHDYAKAIDCYE--LAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA 177
Query: 2390 LKAYEVTIKKGLEEYANSPA 2409
Y IK + + +
Sbjct: 178 SDIYSKLIKSSMGNRLSQWS 197
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.396
Gapped
Lambda K H
0.267 0.0500 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 8,794,418
Number of extensions: 419240
Number of successful extensions: 1031
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1030
Number of HSP's successfully gapped: 28
Length of query: 2426
Length of database: 2,407,596
Length adjustment: 100
Effective length of query: 2326
Effective length of database: 1,034,596
Effective search space: 2406470296
Effective search space used: 2406470296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.8 bits)