Query psy5931
Match_columns 173
No_of_seqs 111 out of 119
Neff 5.2
Searched_HMMs 46136
Date Fri Aug 16 22:10:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5931.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5931hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0889|consensus 100.0 1.8E-55 3.9E-60 452.4 14.8 163 1-173 2738-2900(3550)
2 PF02259 FAT: FAT domain; Int 99.9 4.2E-22 9.1E-27 168.5 14.1 169 2-171 149-352 (352)
3 COG5032 TEL1 Phosphatidylinosi 98.5 2.4E-07 5.3E-12 97.7 7.3 119 1-168 1407-1525(2105)
4 PRK15179 Vi polysaccharide bio 98.4 5.4E-06 1.2E-10 79.8 12.3 137 2-165 89-225 (694)
5 PF13414 TPR_11: TPR repeat; P 98.1 8.5E-06 1.8E-10 54.3 6.1 67 78-156 1-67 (69)
6 PRK15359 type III secretion sy 97.9 8E-05 1.7E-09 57.6 7.8 93 43-157 30-122 (144)
7 PF09976 TPR_21: Tetratricopep 97.6 0.00095 2.1E-08 51.1 10.3 94 3-107 52-145 (145)
8 PRK11189 lipoprotein NlpI; Pro 97.6 0.00029 6.2E-09 60.4 8.2 62 64-128 51-112 (296)
9 PLN03088 SGT1, suppressor of 97.6 0.00037 8.1E-09 61.7 9.1 109 39-169 4-113 (356)
10 PF13428 TPR_14: Tetratricopep 97.3 0.00042 9E-09 43.4 4.3 42 81-122 2-43 (44)
11 PF00515 TPR_1: Tetratricopept 97.3 0.0004 8.6E-09 40.6 3.8 33 80-112 1-33 (34)
12 PF13432 TPR_16: Tetratricopep 97.3 0.0015 3.3E-08 42.9 6.7 63 43-114 3-65 (65)
13 TIGR00990 3a0801s09 mitochondr 97.2 0.0055 1.2E-07 57.2 12.5 111 4-127 336-446 (615)
14 CHL00033 ycf3 photosystem I as 97.2 0.008 1.7E-07 46.7 11.6 131 17-157 17-150 (168)
15 PRK11189 lipoprotein NlpI; Pro 97.2 0.008 1.7E-07 51.5 12.2 105 13-126 40-144 (296)
16 TIGR02521 type_IV_pilW type IV 97.2 0.018 3.9E-07 43.9 13.0 111 5-127 71-182 (234)
17 PRK15359 type III secretion sy 97.1 0.012 2.6E-07 45.4 11.5 111 4-127 29-139 (144)
18 TIGR02552 LcrH_SycD type III s 97.1 0.0048 1E-07 45.4 8.7 101 40-162 20-120 (135)
19 PF13181 TPR_8: Tetratricopept 97.1 0.00068 1.5E-08 39.4 3.3 33 80-112 1-33 (34)
20 cd00189 TPR Tetratricopeptide 97.1 0.007 1.5E-07 38.5 8.2 94 41-156 4-97 (100)
21 TIGR02552 LcrH_SycD type III s 96.9 0.018 3.9E-07 42.3 10.3 102 2-117 20-122 (135)
22 PF13414 TPR_11: TPR repeat; P 96.9 0.0038 8.2E-08 41.3 5.9 63 40-111 6-69 (69)
23 PF07719 TPR_2: Tetratricopept 96.8 0.002 4.4E-08 37.0 3.8 33 80-112 1-33 (34)
24 TIGR02917 PEP_TPR_lipo putativ 96.8 0.023 5E-07 52.0 12.4 67 58-127 582-648 (899)
25 TIGR02795 tol_pal_ybgF tol-pal 96.8 0.017 3.6E-07 40.8 9.1 92 57-161 16-110 (119)
26 PRK02603 photosystem I assembl 96.8 0.014 3E-07 45.8 9.4 109 43-157 41-150 (172)
27 PRK11788 tetratricopeptide rep 96.8 0.066 1.4E-06 45.9 14.3 29 3-31 73-101 (389)
28 TIGR00990 3a0801s09 mitochondr 96.8 0.021 4.5E-07 53.4 11.9 130 3-158 369-498 (615)
29 KOG1173|consensus 96.7 0.0033 7.2E-08 59.7 6.0 68 77-157 309-376 (611)
30 PF13432 TPR_16: Tetratricopep 96.6 0.0048 1E-07 40.5 4.9 60 85-157 2-61 (65)
31 cd00189 TPR Tetratricopeptide 96.6 0.066 1.4E-06 33.8 10.2 97 2-112 3-100 (100)
32 PF13371 TPR_9: Tetratricopept 96.6 0.004 8.7E-08 41.5 4.4 57 56-115 8-64 (73)
33 TIGR02521 type_IV_pilW type IV 96.5 0.06 1.3E-06 41.0 11.1 113 3-127 103-216 (234)
34 KOG0553|consensus 96.5 0.02 4.3E-07 50.7 9.1 105 38-160 78-182 (304)
35 PLN03088 SGT1, suppressor of 96.4 0.045 9.7E-07 48.5 11.2 111 4-128 7-117 (356)
36 PF12895 Apc3: Anaphase-promot 96.4 0.023 4.9E-07 39.4 7.4 82 12-106 2-84 (84)
37 TIGR02917 PEP_TPR_lipo putativ 96.4 0.1 2.3E-06 47.8 13.4 109 5-125 62-170 (899)
38 PRK11788 tetratricopeptide rep 96.2 0.14 3.1E-06 43.8 12.8 115 3-127 111-227 (389)
39 PRK12370 invasion protein regu 96.2 0.026 5.6E-07 52.5 8.5 67 58-127 319-385 (553)
40 COG2976 Uncharacterized protei 96.0 0.15 3.2E-06 43.0 11.6 98 3-111 93-190 (207)
41 PLN03098 LPA1 LOW PSII ACCUMUL 95.9 0.017 3.7E-07 53.7 5.8 70 75-157 70-142 (453)
42 PRK15363 pathogenicity island 95.9 0.06 1.3E-06 43.5 8.3 108 28-157 26-133 (157)
43 TIGR03302 OM_YfiO outer membra 95.8 0.16 3.5E-06 40.9 10.9 109 39-158 35-146 (235)
44 TIGR03302 OM_YfiO outer membra 95.8 0.26 5.7E-06 39.6 12.1 109 3-120 37-155 (235)
45 PRK10049 pgaA outer membrane p 95.8 0.3 6.4E-06 47.4 14.1 134 5-157 278-423 (765)
46 PF14559 TPR_19: Tetratricopep 95.7 0.029 6.3E-07 36.7 5.1 63 57-122 5-67 (68)
47 PRK10370 formate-dependent nit 95.7 0.067 1.5E-06 43.6 8.3 47 77-123 70-116 (198)
48 CHL00033 ycf3 photosystem I as 95.7 0.1 2.3E-06 40.4 9.0 86 73-171 28-117 (168)
49 PRK10370 formate-dependent nit 95.7 0.086 1.9E-06 43.0 8.7 95 56-166 86-183 (198)
50 PRK11447 cellulose synthase su 95.7 0.36 7.7E-06 48.9 14.7 113 3-124 307-429 (1157)
51 TIGR02795 tol_pal_ybgF tol-pal 95.7 0.18 3.9E-06 35.4 9.3 105 2-115 5-111 (119)
52 PRK11447 cellulose synthase su 95.6 0.28 6.2E-06 49.6 13.8 64 57-127 587-650 (1157)
53 PRK02603 photosystem I assembl 95.4 0.084 1.8E-06 41.3 7.6 69 75-156 30-101 (172)
54 PF13429 TPR_15: Tetratricopep 95.4 0.1 2.3E-06 43.5 8.3 50 76-125 142-191 (280)
55 PF09295 ChAPs: ChAPs (Chs5p-A 95.4 0.24 5.1E-06 45.3 11.2 105 7-127 177-281 (395)
56 PRK15363 pathogenicity island 95.2 0.15 3.3E-06 41.2 8.5 77 63-157 23-99 (157)
57 PF14559 TPR_19: Tetratricopep 95.2 0.023 5E-07 37.2 3.1 66 91-169 2-68 (68)
58 COG5010 TadD Flp pilus assembl 95.2 0.15 3.2E-06 44.3 8.8 68 57-127 114-181 (257)
59 PRK09782 bacteriophage N4 rece 95.1 0.25 5.4E-06 49.9 11.5 110 4-127 547-656 (987)
60 PRK15174 Vi polysaccharide exp 95.1 0.43 9.2E-06 45.6 12.5 50 78-127 244-297 (656)
61 PRK09782 bacteriophage N4 rece 95.0 0.39 8.4E-06 48.6 12.5 118 12-157 589-707 (987)
62 PRK10803 tol-pal system protei 94.8 0.36 7.8E-06 41.5 10.2 92 57-161 157-251 (263)
63 PRK10049 pgaA outer membrane p 94.6 0.34 7.4E-06 46.9 10.6 109 3-126 53-162 (765)
64 PF13371 TPR_9: Tetratricopept 94.5 0.13 2.9E-06 34.0 5.5 67 88-167 3-69 (73)
65 smart00028 TPR Tetratricopepti 94.3 0.07 1.5E-06 27.8 3.1 32 81-112 2-33 (34)
66 KOG2076|consensus 94.2 0.51 1.1E-05 47.2 10.8 110 33-166 135-244 (895)
67 PF13424 TPR_12: Tetratricopep 94.1 0.16 3.4E-06 34.3 5.2 49 59-110 28-76 (78)
68 KOG4234|consensus 94.1 0.35 7.6E-06 41.6 8.3 94 58-169 117-211 (271)
69 PRK15174 Vi polysaccharide exp 94.0 1.2 2.6E-05 42.6 12.9 51 77-127 281-331 (656)
70 KOG4162|consensus 93.9 0.54 1.2E-05 46.4 10.4 100 40-161 687-788 (799)
71 PRK12370 invasion protein regu 93.9 0.78 1.7E-05 42.7 11.2 59 57-118 352-410 (553)
72 KOG4626|consensus 93.9 0.17 3.7E-06 49.5 6.8 98 44-157 116-214 (966)
73 PF02184 HAT: HAT (Half-A-TPR) 93.9 0.063 1.4E-06 32.7 2.6 29 95-124 2-30 (32)
74 PF13424 TPR_12: Tetratricopep 93.7 0.2 4.3E-06 33.7 5.2 67 77-156 2-75 (78)
75 KOG4626|consensus 93.3 0.31 6.8E-06 47.7 7.5 68 77-157 113-180 (966)
76 PRK10866 outer membrane biogen 92.6 3.8 8.2E-05 34.5 12.4 126 27-164 26-161 (243)
77 PF13429 TPR_15: Tetratricopep 92.4 0.66 1.4E-05 38.6 7.5 113 3-130 150-264 (280)
78 COG4235 Cytochrome c biogenesi 92.3 0.68 1.5E-05 40.9 7.7 84 75-168 151-235 (287)
79 smart00386 HAT HAT (Half-A-TPR 92.2 0.22 4.7E-06 27.5 3.1 31 94-124 1-31 (33)
80 PLN02789 farnesyltranstransfer 91.9 1.6 3.4E-05 38.6 9.6 90 30-127 29-119 (320)
81 PRK10747 putative protoheme IX 91.5 2.9 6.2E-05 37.3 10.9 124 3-156 267-390 (398)
82 KOG0890|consensus 91.4 2 4.3E-05 47.0 11.1 160 3-172 1674-1850(2382)
83 PF13525 YfiO: Outer membrane 91.3 2.6 5.6E-05 34.1 9.7 112 42-161 10-124 (203)
84 PLN02789 farnesyltranstransfer 91.3 6 0.00013 34.9 12.6 129 3-156 41-171 (320)
85 KOG1126|consensus 91.1 0.76 1.6E-05 44.5 7.1 69 76-157 417-485 (638)
86 KOG1156|consensus 90.8 0.93 2E-05 44.2 7.5 97 41-160 12-108 (700)
87 KOG0548|consensus 90.5 1.6 3.4E-05 41.6 8.5 68 77-157 389-456 (539)
88 COG3063 PilF Tfp pilus assembl 90.3 2.1 4.5E-05 37.2 8.4 115 42-170 40-166 (250)
89 PF13174 TPR_6: Tetratricopept 90.2 0.41 8.8E-06 26.8 2.9 30 83-112 3-32 (33)
90 PF12569 NARP1: NMDA receptor- 88.6 1 2.2E-05 42.6 5.8 52 57-111 208-259 (517)
91 PRK11906 transcriptional regul 88.4 10 0.00023 35.6 12.2 102 44-162 302-406 (458)
92 PRK15179 Vi polysaccharide bio 88.3 2.6 5.7E-05 41.2 8.6 50 78-127 84-133 (694)
93 PF04781 DUF627: Protein of un 87.5 1.9 4E-05 33.2 5.7 76 44-125 3-89 (111)
94 cd05804 StaR_like StaR_like; a 87.1 15 0.00033 30.9 11.8 52 76-127 110-161 (355)
95 PF12895 Apc3: Anaphase-promot 87.0 2.8 6E-05 28.7 6.0 48 79-127 24-71 (84)
96 PF09976 TPR_21: Tetratricopep 86.3 6.4 0.00014 29.7 8.2 93 42-154 53-145 (145)
97 PF06552 TOM20_plant: Plant sp 86.3 1.3 2.9E-05 36.8 4.6 61 97-159 52-112 (186)
98 KOG0543|consensus 86.1 4.6 0.0001 37.2 8.4 90 13-112 229-323 (397)
99 PF12688 TPR_5: Tetratrico pep 85.0 11 0.00023 28.8 8.8 38 75-112 33-70 (120)
100 PF06552 TOM20_plant: Plant sp 84.6 1.6 3.5E-05 36.4 4.3 63 95-163 6-70 (186)
101 PF13176 TPR_7: Tetratricopept 84.5 1.2 2.6E-05 26.5 2.7 29 84-112 3-31 (36)
102 KOG1125|consensus 84.2 3.8 8.2E-05 39.4 7.1 109 34-156 407-527 (579)
103 PRK10803 tol-pal system protei 83.6 2.9 6.4E-05 35.9 5.7 95 11-114 155-251 (263)
104 cd05804 StaR_like StaR_like; a 83.3 16 0.00034 30.9 10.0 98 4-111 119-217 (355)
105 KOG3824|consensus 82.9 2.5 5.4E-05 38.6 5.2 67 78-157 113-180 (472)
106 PHA02537 M terminase endonucle 82.8 3.4 7.3E-05 35.4 5.7 100 3-113 103-211 (230)
107 PRK10153 DNA-binding transcrip 82.1 3.7 8E-05 38.6 6.2 66 80-159 420-485 (517)
108 KOG2076|consensus 81.5 23 0.00049 35.9 11.5 125 8-158 148-272 (895)
109 COG5010 TadD Flp pilus assembl 81.4 6.2 0.00013 34.4 6.9 49 81-129 101-149 (257)
110 PRK10153 DNA-binding transcrip 80.9 2.4 5.2E-05 39.9 4.5 48 79-131 452-499 (517)
111 PF09986 DUF2225: Uncharacteri 80.8 6.1 0.00013 33.0 6.5 54 59-112 141-197 (214)
112 PF08631 SPO22: Meiosis protei 79.9 36 0.00079 28.9 11.8 102 4-111 40-152 (278)
113 KOG4642|consensus 79.7 7.6 0.00016 34.2 6.8 76 31-121 4-85 (284)
114 PF12569 NARP1: NMDA receptor- 79.2 5.2 0.00011 37.8 6.2 74 82-168 196-274 (517)
115 PF13525 YfiO: Outer membrane 79.2 13 0.00029 30.0 7.8 101 5-114 11-124 (203)
116 TIGR00540 hemY_coli hemY prote 79.1 37 0.00079 30.3 11.3 114 3-129 267-385 (409)
117 KOG1155|consensus 78.7 3.8 8.2E-05 39.0 5.0 67 83-163 333-399 (559)
118 KOG1126|consensus 78.2 12 0.00025 36.6 8.2 108 5-115 495-626 (638)
119 KOG0495|consensus 78.0 6.6 0.00014 39.0 6.5 67 79-158 650-716 (913)
120 PRK14574 hmsH outer membrane p 77.8 50 0.0011 33.1 12.7 32 87-118 109-140 (822)
121 COG4941 Predicted RNA polymera 76.8 3.1 6.8E-05 38.1 3.8 50 59-114 345-399 (415)
122 COG4783 Putative Zn-dependent 76.8 14 0.00031 34.9 8.2 51 78-128 338-388 (484)
123 PRK14720 transcript cleavage f 76.8 34 0.00074 34.8 11.3 133 3-151 35-180 (906)
124 PF13374 TPR_10: Tetratricopep 76.8 4.2 9.1E-05 23.5 3.2 32 81-112 3-34 (42)
125 PRK10941 hypothetical protein; 75.6 29 0.00063 30.1 9.3 78 30-115 173-250 (269)
126 PF13512 TPR_18: Tetratricopep 75.3 18 0.00038 28.8 7.3 116 29-160 6-132 (142)
127 PF14938 SNAP: Soluble NSF att 75.0 13 0.00028 31.6 6.9 70 77-160 32-107 (282)
128 KOG0547|consensus 74.3 5.5 0.00012 38.1 4.8 52 76-127 390-441 (606)
129 PF14938 SNAP: Soluble NSF att 74.3 53 0.0011 27.8 12.5 48 59-110 138-185 (282)
130 PF04733 Coatomer_E: Coatomer 73.9 55 0.0012 28.4 10.7 110 7-127 139-248 (290)
131 PRK14574 hmsH outer membrane p 73.3 78 0.0017 31.8 12.8 124 6-157 75-199 (822)
132 PF12968 DUF3856: Domain of Un 72.2 5.3 0.00011 31.8 3.6 79 30-110 41-130 (144)
133 PLN03098 LPA1 LOW PSII ACCUMUL 72.0 11 0.00025 35.3 6.3 57 44-109 82-141 (453)
134 PF10602 RPN7: 26S proteasome 70.8 50 0.0011 26.5 9.1 53 58-114 18-70 (177)
135 KOG0376|consensus 69.6 3.3 7.1E-05 39.0 2.2 78 76-166 34-112 (476)
136 PF12688 TPR_5: Tetratrico pep 69.4 47 0.001 25.2 10.5 97 5-108 7-103 (120)
137 KOG2376|consensus 69.0 15 0.00032 35.9 6.4 27 81-107 111-137 (652)
138 PF13431 TPR_17: Tetratricopep 69.0 5.4 0.00012 23.6 2.4 25 76-100 9-33 (34)
139 KOG1125|consensus 68.9 12 0.00027 36.0 5.9 41 85-125 290-330 (579)
140 KOG0543|consensus 67.5 47 0.001 30.8 9.1 94 32-127 203-304 (397)
141 COG3107 LppC Putative lipoprot 67.2 53 0.0011 31.9 9.6 141 4-161 68-216 (604)
142 KOG4162|consensus 67.1 29 0.00063 34.7 8.1 52 77-128 681-732 (799)
143 PF09295 ChAPs: ChAPs (Chs5p-A 67.1 46 0.001 30.5 9.1 90 3-105 204-293 (395)
144 PF13281 DUF4071: Domain of un 66.8 82 0.0018 28.9 10.6 91 58-157 162-256 (374)
145 COG4785 NlpI Lipoprotein NlpI, 66.7 11 0.00024 33.0 4.7 50 75-124 60-109 (297)
146 KOG2047|consensus 66.6 1.1E+02 0.0024 30.7 11.8 115 3-131 590-711 (835)
147 KOG1840|consensus 66.4 89 0.0019 29.8 11.0 119 5-128 247-381 (508)
148 PF13512 TPR_18: Tetratricopep 66.2 61 0.0013 25.8 8.5 101 6-114 17-133 (142)
149 KOG3060|consensus 65.9 8.5 0.00019 34.0 3.9 55 55-112 64-118 (289)
150 PRK10866 outer membrane biogen 65.7 80 0.0017 26.5 9.7 107 6-120 39-164 (243)
151 KOG1155|consensus 64.8 33 0.00071 32.9 7.7 53 76-128 428-480 (559)
152 PF14853 Fis1_TPR_C: Fis1 C-te 64.6 15 0.00032 24.3 4.1 36 82-117 3-38 (53)
153 KOG2002|consensus 62.8 12 0.00026 38.2 4.7 58 56-113 283-340 (1018)
154 PRK15331 chaperone protein Sic 62.7 65 0.0014 26.3 8.2 51 75-126 33-83 (165)
155 PF04733 Coatomer_E: Coatomer 62.7 19 0.0004 31.3 5.4 56 56-119 115-175 (290)
156 KOG1840|consensus 62.1 30 0.00066 32.8 7.1 93 13-111 304-398 (508)
157 PF13431 TPR_17: Tetratricopep 62.0 7.1 0.00015 23.0 1.9 27 102-128 1-27 (34)
158 KOG0548|consensus 61.2 23 0.0005 34.0 6.1 87 57-160 16-103 (539)
159 KOG0553|consensus 61.0 86 0.0019 28.1 9.3 93 11-117 93-186 (304)
160 PF14929 TAF1_subA: TAF RNA Po 59.9 1.3E+02 0.0028 29.0 10.9 53 57-113 323-377 (547)
161 cd02680 MIT_calpain7_2 MIT: do 59.6 12 0.00025 26.7 3.0 35 78-112 4-38 (75)
162 cd02678 MIT_VPS4 MIT: domain c 59.2 19 0.00042 24.9 4.1 36 78-113 4-39 (75)
163 KOG0550|consensus 58.6 26 0.00057 33.0 5.9 82 78-171 201-291 (486)
164 PF10345 Cohesin_load: Cohesin 57.7 1.3E+02 0.0028 28.6 10.6 95 10-104 319-428 (608)
165 TIGR00540 hemY_coli hemY prote 57.5 1.4E+02 0.003 26.5 10.5 91 4-109 123-216 (409)
166 KOG1174|consensus 57.3 26 0.00056 33.3 5.6 66 79-155 231-296 (564)
167 KOG2796|consensus 56.6 46 0.001 30.0 6.8 91 5-104 128-236 (366)
168 PF10300 DUF3808: Protein of u 55.2 1.3E+02 0.0028 27.9 9.9 97 5-111 273-378 (468)
169 KOG2002|consensus 54.2 42 0.00091 34.5 6.9 78 31-115 663-751 (1018)
170 KOG0495|consensus 54.0 26 0.00057 35.0 5.3 68 58-128 666-733 (913)
171 KOG0550|consensus 53.9 48 0.001 31.3 6.8 57 59-121 272-328 (486)
172 KOG1174|consensus 53.9 1E+02 0.0022 29.4 8.9 53 56-111 313-365 (564)
173 KOG1129|consensus 53.9 83 0.0018 29.3 8.1 103 3-119 227-329 (478)
174 KOG4555|consensus 53.6 23 0.0005 28.9 4.1 40 80-119 43-82 (175)
175 cd02684 MIT_2 MIT: domain cont 53.4 25 0.00053 24.7 3.8 35 78-112 4-38 (75)
176 PLN03077 Protein ECB2; Provisi 53.3 2.1E+02 0.0046 28.0 11.5 108 3-125 558-665 (857)
177 KOG1070|consensus 53.0 17 0.00037 38.8 4.0 39 89-127 1539-1577(1710)
178 PRK13184 pknD serine/threonine 52.8 72 0.0016 32.6 8.3 115 2-127 770-884 (932)
179 KOG2376|consensus 51.4 90 0.0019 30.7 8.3 99 12-127 25-123 (652)
180 COG1729 Uncharacterized protei 49.5 41 0.00089 29.4 5.3 38 76-113 210-248 (262)
181 KOG1988|consensus 48.7 1.3E+02 0.0029 30.8 9.3 108 7-133 603-712 (970)
182 COG3063 PilF Tfp pilus assembl 48.6 1.1E+02 0.0024 26.7 7.8 67 64-130 19-85 (250)
183 KOG1173|consensus 48.1 1.4E+02 0.003 29.2 9.0 63 59-124 437-499 (611)
184 KOG2003|consensus 47.6 9.5 0.00021 36.7 1.2 74 30-117 240-313 (840)
185 KOG0547|consensus 47.6 28 0.00061 33.5 4.3 59 58-116 294-362 (606)
186 PF08311 Mad3_BUB1_I: Mad3/BUB 47.5 97 0.0021 23.5 6.6 43 61-107 84-126 (126)
187 cd02683 MIT_1 MIT: domain cont 47.5 41 0.00088 23.7 4.2 35 77-111 3-37 (77)
188 KOG2003|consensus 46.8 50 0.0011 32.0 5.8 51 79-129 557-607 (840)
189 KOG2997|consensus 46.5 27 0.00059 31.8 3.9 43 76-118 15-57 (366)
190 cd02681 MIT_calpain7_1 MIT: do 45.7 37 0.00081 24.1 3.8 34 77-110 3-36 (76)
191 PF12862 Apc5: Anaphase-promot 44.8 75 0.0016 22.5 5.4 28 84-111 45-72 (94)
192 PF14907 NTP_transf_5: Unchara 44.2 1.1E+02 0.0024 24.7 7.0 78 3-93 6-85 (249)
193 PF07721 TPR_4: Tetratricopept 44.0 33 0.00072 18.7 2.7 23 82-104 3-25 (26)
194 KOG2053|consensus 43.9 57 0.0012 33.3 6.0 26 80-105 43-68 (932)
195 smart00745 MIT Microtubule Int 42.9 43 0.00092 22.8 3.7 35 78-112 6-40 (77)
196 KOG4234|consensus 42.8 19 0.00041 31.3 2.2 33 83-115 98-130 (271)
197 KOG3616|consensus 41.9 51 0.0011 33.8 5.2 54 78-131 659-723 (1636)
198 PRK10747 putative protoheme IX 41.2 2.6E+02 0.0056 24.8 9.8 95 5-111 124-218 (398)
199 KOG1127|consensus 40.8 56 0.0012 34.1 5.4 33 95-127 473-505 (1238)
200 cd02656 MIT MIT: domain contai 40.7 50 0.0011 22.4 3.8 35 78-112 4-38 (75)
201 KOG1070|consensus 40.5 2.3E+02 0.005 30.9 9.7 147 16-172 1498-1663(1710)
202 COG1729 Uncharacterized protei 40.3 57 0.0012 28.5 4.8 58 59-116 157-214 (262)
203 KOG3364|consensus 39.0 73 0.0016 25.8 4.8 72 55-127 47-118 (149)
204 cd02682 MIT_AAA_Arch MIT: doma 38.7 65 0.0014 22.9 4.1 38 77-114 3-40 (75)
205 PF04212 MIT: MIT (microtubule 38.2 78 0.0017 21.1 4.4 33 79-111 4-36 (69)
206 PF10579 Rapsyn_N: Rapsyn N-te 38.1 77 0.0017 23.0 4.4 33 89-128 32-64 (80)
207 PRK11906 transcriptional regul 37.0 75 0.0016 30.0 5.3 55 57-114 352-406 (458)
208 TIGR01565 homeo_ZF_HD homeobox 36.0 51 0.0011 22.3 3.1 42 73-118 7-53 (58)
209 PRK15490 Vi polysaccharide bio 34.8 2.1E+02 0.0046 27.8 8.1 79 39-128 7-88 (578)
210 PF04994 TfoX_C: TfoX C-termin 33.5 1.3E+02 0.0027 21.4 5.0 63 13-84 10-79 (81)
211 PRK14720 transcript cleavage f 33.3 1.3E+02 0.0028 30.8 6.7 80 39-128 118-200 (906)
212 PF04184 ST7: ST7 protein; In 33.2 4.6E+02 0.01 25.4 10.1 100 4-115 264-381 (539)
213 KOG1498|consensus 32.6 3.2E+02 0.0069 25.7 8.5 116 5-127 137-258 (439)
214 PF04348 LppC: LppC putative l 32.6 15 0.00032 34.8 0.0 81 42-129 29-109 (536)
215 KOG1585|consensus 32.4 2.4E+02 0.0051 25.3 7.4 82 15-106 74-176 (308)
216 TIGR01716 RGG_Cterm transcript 30.8 1.4E+02 0.0031 23.7 5.5 71 4-75 133-207 (220)
217 COG0457 NrfG FOG: TPR repeat [ 30.6 1.9E+02 0.004 20.1 13.0 70 57-128 144-216 (291)
218 PF07720 TPR_3: Tetratricopept 29.6 1.2E+02 0.0026 18.3 3.8 25 87-111 8-34 (36)
219 PF04348 LppC: LppC putative l 29.5 18 0.00039 34.2 0.0 98 4-108 29-126 (536)
220 KOG2053|consensus 29.5 4.7E+02 0.01 27.1 9.7 99 60-167 60-171 (932)
221 COG4785 NlpI Lipoprotein NlpI, 29.5 68 0.0015 28.2 3.5 41 77-117 96-136 (297)
222 smart00101 14_3_3 14-3-3 homol 29.4 2.4E+02 0.0053 24.2 6.9 85 59-148 96-199 (244)
223 KOG2047|consensus 28.9 85 0.0018 31.4 4.4 43 81-123 388-434 (835)
224 PF05843 Suf: Suppressor of fo 28.7 1.5E+02 0.0033 25.2 5.6 114 2-127 4-120 (280)
225 COG4700 Uncharacterized protei 27.8 3.3E+02 0.0072 23.5 7.3 68 56-128 140-207 (251)
226 PRK15331 chaperone protein Sic 27.5 53 0.0011 26.8 2.4 64 80-156 71-134 (165)
227 PRK04841 transcriptional regul 26.4 6E+02 0.013 24.6 12.4 48 80-127 691-744 (903)
228 KOG2300|consensus 25.4 4.1E+02 0.0088 26.0 8.1 72 36-111 404-476 (629)
229 PHA00099 minor capsid protein 25.4 1.1E+02 0.0025 24.4 3.8 41 5-50 44-90 (147)
230 PF10255 Paf67: RNA polymerase 25.1 1.1E+02 0.0025 28.2 4.4 51 57-108 136-192 (404)
231 PF11846 DUF3366: Domain of un 25.0 1.5E+02 0.0033 23.4 4.6 33 79-111 143-175 (193)
232 KOG1128|consensus 24.9 3.7E+02 0.0079 27.2 7.9 42 81-122 520-561 (777)
233 PLN03081 pentatricopeptide (PP 24.6 6.2E+02 0.013 24.1 11.3 94 3-106 395-488 (697)
234 PF12854 PPR_1: PPR repeat 23.5 76 0.0017 18.4 2.0 17 89-105 16-32 (34)
235 PF14361 RsbRD_N: RsbT co-anta 23.5 2.9E+02 0.0063 19.9 5.9 60 32-95 43-104 (105)
236 KOG0307|consensus 23.1 36 0.00079 35.1 0.8 87 61-158 526-619 (1049)
237 KOG1129|consensus 22.7 2.2E+02 0.0048 26.6 5.7 100 13-123 338-438 (478)
238 cd08767 Cdt1_c The C-terminal 22.5 1.4E+02 0.0031 22.8 3.9 57 6-69 35-94 (126)
239 KOG4648|consensus 22.4 2.6E+02 0.0057 26.3 6.1 86 27-121 83-172 (536)
240 PF10300 DUF3808: Protein of u 22.0 5.1E+02 0.011 24.0 8.1 48 59-109 249-296 (468)
241 KOG4555|consensus 22.0 1.4E+02 0.003 24.4 3.8 63 59-127 100-166 (175)
242 KOG3783|consensus 21.9 2.8E+02 0.006 26.9 6.3 51 55-107 426-476 (546)
243 PF03704 BTAD: Bacterial trans 21.7 3.3E+02 0.0072 20.0 10.6 91 35-125 4-107 (146)
244 PF12862 Apc5: Anaphase-promot 21.7 2.5E+02 0.0053 19.8 4.8 69 91-172 9-86 (94)
245 KOG1127|consensus 21.6 4.2E+02 0.0091 28.0 7.8 67 57-126 16-83 (1238)
246 KOG3081|consensus 21.5 6E+02 0.013 22.8 8.5 42 80-121 137-183 (299)
247 PF12186 AcylCoA_dehyd_C: Acyl 20.9 1.9E+02 0.0041 22.3 4.2 86 21-114 5-93 (114)
248 PLN03218 maturation of RBCL 1; 20.6 8.4E+02 0.018 25.4 9.9 48 59-108 665-712 (1060)
249 PF02071 NSF: Aromatic-di-Alan 20.5 47 0.001 15.8 0.5 11 146-156 1-11 (12)
250 PLN03081 pentatricopeptide (PP 20.5 7.5E+02 0.016 23.6 9.9 29 79-107 527-555 (697)
251 cd02677 MIT_SNX15 MIT: domain 20.3 1.5E+02 0.0032 20.8 3.3 32 80-111 6-37 (75)
252 PF09675 Chlamy_scaf: Chlamydi 20.3 2.1E+02 0.0045 22.2 4.3 14 5-18 14-27 (114)
253 KOG1128|consensus 20.2 3E+02 0.0066 27.7 6.4 98 4-123 403-528 (777)
No 1
>KOG0889|consensus
Probab=100.00 E-value=1.8e-55 Score=452.44 Aligned_cols=163 Identities=50% Similarity=0.875 Sum_probs=159.4
Q ss_pred ChhHHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhH
Q psy5931 1 AIIQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTA 80 (173)
Q Consensus 1 ~~~~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qka 80 (173)
++|+|||+|||||+++||++.|++|||+|+|||+|||+|+|||+|||+|+ ++|+++|||||++|||+||+++|+|
T Consensus 2738 ~in~fakvArkh~l~~vcl~~L~~iytlp~veiqdaF~K~req~~c~l~~-----~~e~~~gLevi~sTNl~yF~~~q~a 2812 (3550)
T KOG0889|consen 2738 AINRFAKVARKHGLPDVCLNQLAKIYTLPNVEIQDAFQKLREQAKCYLQN-----KNELKTGLEVIESTNLMYFSDRQKA 2812 (3550)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcC-----hHHHHHHHHHHhcccHHHHhhHHHH
Confidence 48999999999999999999999999999999999999999999999998 6899999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCCCc
Q psy5931 81 EFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKES 160 (173)
Q Consensus 81 E~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~~~ 160 (173)
|||+|||+|+++||+.||||++|++|||+|++++|+|++||+|+|++|.++| .++++|.+|++|||||+++++++
T Consensus 2813 eff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~-----~ni~~a~~avsCyLqA~~~~~~s 2887 (3550)
T KOG0889|consen 2813 EFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEP-----VNISFACNAVSCYLQAARLYNSS 2887 (3550)
T ss_pred HHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccC-----cccHHHHHHHHHHHHHhccccch
Confidence 9999999999999999999999999999999999999999999999999997 45899999999999999999999
Q ss_pred hhhhhHHHHhhcC
Q psy5931 161 MSRKYLAKVDYIF 173 (173)
Q Consensus 161 k~Rk~laRiLWLL 173 (173)
|+||||+||||||
T Consensus 2888 kaRk~iakvLwLl 2900 (3550)
T KOG0889|consen 2888 KARKLIAKVLWLL 2900 (3550)
T ss_pred hhHHHHHHHHHHH
Confidence 9999999999996
No 2
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=99.88 E-value=4.2e-22 Score=168.46 Aligned_cols=169 Identities=25% Similarity=0.368 Sum_probs=149.0
Q ss_pred hhHHHHHHHhCCChHHHHHHHHhhcC--------CCCCcH------------HHHHHHHHHHHHHHhhhhccC-ChhHHH
Q psy5931 2 IIQFGKIARKHHLTSVCLDSLFRLYT--------IPSVPI------------VDCFEKIRQQVKCYLQMAALD-GKNQLQ 60 (173)
Q Consensus 2 ~~~fa~iARkh~l~~vc~~~L~ki~~--------lp~i~v------------~daF~KlrEq~kc~l~~~~~~-~~~el~ 60 (173)
.++||++|||+|..++|...|.++.. .|.|.+ .+|+.+|++.++|+++..... ...++.
T Consensus 149 ~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~ 228 (352)
T PF02259_consen 149 WLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELK 228 (352)
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHh
Confidence 58999999999999999999999998 788888 999999999999988864221 223455
Q ss_pred HHH----HHhhhccccCCCchhhHHHHHHHHHHHHHh------CCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCC
Q psy5931 61 EGL----EVIEHTNLKYLTKEMTAEFYALKGMLLAQI------GRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTN 130 (173)
Q Consensus 61 ~gL----~vi~~tnl~~F~~~qkaE~~~LKG~fl~~L------g~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~ 130 (173)
.|+ +++++++++.+.++++++.|.+.|.+...+ +..+++.+.|..|++++|+..|+|..||.++|+++..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~ 308 (352)
T PF02259_consen 229 SGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLES 308 (352)
T ss_pred hccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHh
Confidence 554 999999999999999999999999999999 8899999999999999999999999999999999987
Q ss_pred CCCCCC----CchhhhHHHHHHHHHHHchhCCCchhhhhHHHHhh
Q psy5931 131 PSPPGS----APNMVLGVFAVTCFMHACRHQKESMSRKYLAKVDY 171 (173)
Q Consensus 131 ~~~~~~----~~~~~~~~~Ai~CyLqA~~~~~~~k~Rk~laRiLW 171 (173)
++.... +....++..||.||++|+++ ++..++..++|+||
T Consensus 309 ~~~~~~~~~~~~~~~~~~~ai~~y~~al~~-~~~~~~~~~~RlLt 352 (352)
T PF02259_consen 309 DPREKEESSQEDRSEYLEQAIEGYLKALSL-GSKYVRQDLPRLLT 352 (352)
T ss_pred hhhcccccchhHHHHHHHHHHHHHHHHHhh-CCCchHHHhhHhcC
Confidence 763211 24678999999999999999 55599999999997
No 3
>COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=98.48 E-value=2.4e-07 Score=97.70 Aligned_cols=119 Identities=25% Similarity=0.461 Sum_probs=104.6
Q ss_pred ChhHHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhH
Q psy5931 1 AIIQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTA 80 (173)
Q Consensus 1 ~~~~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qka 80 (173)
++++|+++||+|+.++ +.+.+++.+|.+.++++|.+++++..|+++ +.++..|+++.+.+|+++|..-|++
T Consensus 1407 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 1477 (2105)
T COG5032 1407 SINSFASVARKHFLPD---NQLKKIYQLSNILISEAFLLLRYLLLCRLG------RRELKAGLNVWNLTNLELFSDIQES 1477 (2105)
T ss_pred HHHHHHHHHHHhcCcH---HHHHHHhhhhhhhcchHHHHHHHHHHHHhh------hHHHHHHHHhhcccchhHHHHHHHH
Confidence 3689999999999999 999999999999999999999999999998 4789999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCCCc
Q psy5931 81 EFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKES 160 (173)
Q Consensus 81 E~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~~~ 160 (173)
+++ +||.+.+.++...+ ....+...++.||+++.......
T Consensus 1478 ~~~-----------------------------------~~~~~~~~~~~~~~-----~~~~~~s~~~~~~~~~~~~l~~~ 1517 (2105)
T COG5032 1478 EFF-----------------------------------EWGKNLKLLSIIPP-----IEEIFLSNALSCYLQVKDLLKKL 1517 (2105)
T ss_pred HHH-----------------------------------HhhhhhHHhccCCc-----hhHHHHhhhccchHHHHHHHHhh
Confidence 998 89998888887665 56778888999999988766655
Q ss_pred hhhhhHHH
Q psy5931 161 MSRKYLAK 168 (173)
Q Consensus 161 k~Rk~laR 168 (173)
..+....+
T Consensus 1518 ~~~~~~~~ 1525 (2105)
T COG5032 1518 NLFELLGS 1525 (2105)
T ss_pred HHHHHhhh
Confidence 55555544
No 4
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.35 E-value=5.4e-06 Score=79.85 Aligned_cols=137 Identities=13% Similarity=0.080 Sum_probs=113.0
Q ss_pred hhHHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHH
Q psy5931 2 IIQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAE 81 (173)
Q Consensus 2 ~~~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE 81 (173)
+..+|++....|-+|.+...|.++..+ .-.-..|+. .-+.++.+. +.+.+++..++..-- ..+..++
T Consensus 89 ~~~La~i~~~~g~~~ea~~~l~~~~~~-~Pd~~~a~~---~~a~~L~~~------~~~eeA~~~~~~~l~---~~p~~~~ 155 (694)
T PRK15179 89 QVLVARALEAAHRSDEGLAVWRGIHQR-FPDSSEAFI---LMLRGVKRQ------QGIEAGRAEIELYFS---GGSSSAR 155 (694)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhh-CCCcHHHHH---HHHHHHHHh------ccHHHHHHHHHHHhh---cCCCCHH
Confidence 567999999999999999999999887 333444443 335566663 568999999988766 7899999
Q ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCCCch
Q psy5931 82 FYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKESM 161 (173)
Q Consensus 82 ~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~~~k 161 (173)
...++|+.+.++|++|||...|..++.-+|..+++|.+||+-+..+.. ...|+.+|.+|+..- ...
T Consensus 156 ~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~-------------~~~A~~~~~~a~~~~-~~~ 221 (694)
T PRK15179 156 EILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGA-------------LWRARDVLQAGLDAI-GDG 221 (694)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHhh-Ccc
Confidence 999999999999999999999999999888999999999999988863 355999999999873 444
Q ss_pred hhhh
Q psy5931 162 SRKY 165 (173)
Q Consensus 162 ~Rk~ 165 (173)
+|||
T Consensus 222 ~~~~ 225 (694)
T PRK15179 222 ARKL 225 (694)
T ss_pred hHHH
Confidence 4553
No 5
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.13 E-value=8.5e-06 Score=54.29 Aligned_cols=67 Identities=21% Similarity=0.068 Sum_probs=59.6
Q ss_pred hhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchh
Q psy5931 78 MTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRH 156 (173)
Q Consensus 78 qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~ 156 (173)
|.|+.+...|..+...|++++|-+.|..|++++|+.+.+|...|.-+..+-. --..|+.+|.+|+.+
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~------------~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGK------------DYEEAIEDFEKALKL 67 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTT------------HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCc------------cHHHHHHHHHHHHHc
Confidence 5689999999999999999999999999999999999999999998777631 136799999999876
No 6
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.85 E-value=8e-05 Score=57.60 Aligned_cols=93 Identities=8% Similarity=-0.072 Sum_probs=76.2
Q ss_pred HHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHH
Q psy5931 43 QVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGD 122 (173)
Q Consensus 43 q~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~ 122 (173)
.+.++.++ +++.++++.+...-- ..+..++.+..+|..+.++|++++|...|..|+.++|..+.+|..+|.
T Consensus 30 ~g~~~~~~------g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~ 100 (144)
T PRK15359 30 SGYASWQE------GDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGV 100 (144)
T ss_pred HHHHHHHc------CCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 36666663 567778777766432 245578999999999999999999999999999999999999999999
Q ss_pred hHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhC
Q psy5931 123 YMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQ 157 (173)
Q Consensus 123 ~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~ 157 (173)
.+..+-. -..|+.+|-+|+++.
T Consensus 101 ~l~~~g~-------------~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 101 CLKMMGE-------------PGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHcCC-------------HHHHHHHHHHHHHhC
Confidence 8877632 245999999999874
No 7
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.61 E-value=0.00095 Score=51.09 Aligned_cols=94 Identities=20% Similarity=0.229 Sum_probs=76.0
Q ss_pred hHHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHH
Q psy5931 3 IQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEF 82 (173)
Q Consensus 3 ~~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~ 82 (173)
..+|++.-..|=++-++..|.++-.-+.=+....+.++|- ++++++. +++.+++..++... .++.++..
T Consensus 52 l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L-A~~~~~~------~~~d~Al~~L~~~~----~~~~~~~~ 120 (145)
T PF09976_consen 52 LQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL-ARILLQQ------GQYDEALATLQQIP----DEAFKALA 120 (145)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH-HHHHHHc------CCHHHHHHHHHhcc----CcchHHHH
Confidence 4678899999999999999999877542333445667764 8899874 67999999997744 34557788
Q ss_pred HHHHHHHHHHhCCchHHHHHHHHHH
Q psy5931 83 YALKGMLLAQIGRSAEANKAFSAAV 107 (173)
Q Consensus 83 ~~LKG~fl~~Lg~~deA~~~F~~Av 107 (173)
+.++|.++.+.|+.++|-++|..|+
T Consensus 121 ~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 121 AELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 9999999999999999999999885
No 8
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.60 E-value=0.00029 Score=60.41 Aligned_cols=62 Identities=26% Similarity=0.389 Sum_probs=53.6
Q ss_pred HHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhc
Q psy5931 64 EVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQF 128 (173)
Q Consensus 64 ~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f 128 (173)
++|+...+ ++++.++.|..+|.++.++|+.++|...|..|++++|+.+.+|...|..+..+-
T Consensus 51 ~~l~~~~~---~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g 112 (296)
T PRK11189 51 QILASRDL---TDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAG 112 (296)
T ss_pred HHHccccC---CcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC
Confidence 46655555 788999999999999999999999999999999999999999999998876653
No 9
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.60 E-value=0.00037 Score=61.66 Aligned_cols=109 Identities=14% Similarity=0.104 Sum_probs=85.0
Q ss_pred HHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHH
Q psy5931 39 KIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWA 118 (173)
Q Consensus 39 KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~ 118 (173)
++++++...+.. .++.++++..+..-- ..+..++.+..+|..+.++|++++|...|..|++++|..+.+|.
T Consensus 4 ~l~~~a~~a~~~------~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~ 74 (356)
T PLN03088 4 DLEDKAKEAFVD------DDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYL 74 (356)
T ss_pred HHHHHHHHHHHc------CCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHH
Confidence 467778887773 567788887766643 34556889999999999999999999999999999999999999
Q ss_pred HHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCC-CchhhhhHHHH
Q psy5931 119 LWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQK-ESMSRKYLAKV 169 (173)
Q Consensus 119 ~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~-~~k~Rk~laRi 169 (173)
.-|..+.++-. -..|+.+|-+|+++.. +...+..+.++
T Consensus 75 ~lg~~~~~lg~-------------~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 75 RKGTACMKLEE-------------YQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHhCC-------------HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99988877631 3568899999998753 34444444443
No 10
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.33 E-value=0.00042 Score=43.38 Aligned_cols=42 Identities=14% Similarity=0.255 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHH
Q psy5931 81 EFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGD 122 (173)
Q Consensus 81 E~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~ 122 (173)
+.+..-|..+..+|+.|+|-+.|..+++.+|+.+.+|..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 567778999999999999999999999999999999998875
No 11
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.31 E-value=0.0004 Score=40.58 Aligned_cols=33 Identities=27% Similarity=0.276 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHccchh
Q psy5931 80 AEFYALKGMLLAQIGRSAEANKAFSAAVQMHDV 112 (173)
Q Consensus 80 aE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~ 112 (173)
|+.|..+|..+..+|++++|-..|..|++++|+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 678999999999999999999999999999986
No 12
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.26 E-value=0.0015 Score=42.93 Aligned_cols=63 Identities=21% Similarity=0.232 Sum_probs=50.4
Q ss_pred HHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhH
Q psy5931 43 QVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMV 114 (173)
Q Consensus 43 q~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~ 114 (173)
++..+++ .+++.++++.++..--.+ +..++.+...|.++.+.|++++|-..|..++..+|+.|
T Consensus 3 ~a~~~~~------~g~~~~A~~~~~~~l~~~---P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQ------QGDYDEAIAAFEQALKQD---PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHH------CTHHHHHHHHHHHHHCCS---TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHH------cCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4666776 367888888888876644 67899999999999999999999999999999988754
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.24 E-value=0.0055 Score=57.18 Aligned_cols=111 Identities=13% Similarity=0.152 Sum_probs=77.6
Q ss_pred HHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHH
Q psy5931 4 QFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFY 83 (173)
Q Consensus 4 ~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~ 83 (173)
..|.+-...|-++.++..+.+...+. -...+++. ..+.|+++. +++.++++.++.. +.. .+..++.+
T Consensus 336 ~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~---~la~~~~~~------g~~~eA~~~~~~a-l~~--~p~~~~~~ 402 (615)
T TIGR00990 336 LRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYI---KRASMNLEL------GDPDKAEEDFDKA-LKL--NSEDPDIY 402 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHH---HHHHHHHHC------CCHHHHHHHHHHH-HHh--CCCCHHHH
Confidence 34455556677788888888865542 12233333 336666663 4566666665543 221 24457899
Q ss_pred HHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhh
Q psy5931 84 ALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQ 127 (173)
Q Consensus 84 ~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~ 127 (173)
..+|.++..+|++++|...|..|+.++|..+.+|...|..+.++
T Consensus 403 ~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~ 446 (615)
T TIGR00990 403 YHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKE 446 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999998888877654
No 14
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.23 E-value=0.008 Score=46.74 Aligned_cols=131 Identities=11% Similarity=0.001 Sum_probs=83.1
Q ss_pred HHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCc
Q psy5931 17 VCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRS 96 (173)
Q Consensus 17 vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~ 96 (173)
+..+.|++|+..- -....+... ..-+.|+..+ +++.+++..+...--..=.+.+.+..+...|.++.++|++
T Consensus 17 ~~~~~l~~~~~~~-~~~~~a~~~-~~~g~~~~~~------g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~ 88 (168)
T CHL00033 17 IVADILLRILPTT-SGEKEAFTY-YRDGMSAQSE------GEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEH 88 (168)
T ss_pred cchhhhhHhccCC-chhHHHHHH-HHHHHHHHHc------CCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCH
Confidence 3446667775421 111122221 2226666654 3455666555544211112335677889999999999999
Q ss_pred hHHHHHHHHHHccchhhHHHHHHHHHhHHhhcC---CCCCCCCCchhhhHHHHHHHHHHHchhC
Q psy5931 97 AEANKAFSAAVQMHDVMVKAWALWGDYMEAQFT---NPSPPGSAPNMVLGVFAVTCFMHACRHQ 157 (173)
Q Consensus 97 deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~---~~~~~~~~~~~~~~~~Ai~CyLqA~~~~ 157 (173)
++|.+.|.+|+.++|..+.+|...|...-.+-. ... .......+...|+.+|-++.+..
T Consensus 89 ~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g--~~~~A~~~~~~a~~~~~~a~~~~ 150 (168)
T CHL00033 89 TKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQG--DSEIAEAWFDQAAEYWKQAIALA 150 (168)
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcc--cHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999998888763321 000 00134556778888888888774
No 15
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.20 E-value=0.008 Score=51.50 Aligned_cols=105 Identities=14% Similarity=0.089 Sum_probs=66.3
Q ss_pred CChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHH
Q psy5931 13 HLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQ 92 (173)
Q Consensus 13 ~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~ 92 (173)
+-.|+.+..++++..-......+--.-.-+.+..|..+ .++.+++...+..-- ..+..++.+...|..+..
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~------g~~~~A~~~~~~Al~---l~P~~~~a~~~lg~~~~~ 110 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSL------GLRALARNDFSQALA---LRPDMADAYNYLGIYLTQ 110 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHC------CCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHH
Confidence 34567777777765422221111011122334444443 234444443332211 134558899999999999
Q ss_pred hCCchHHHHHHHHHHccchhhHHHHHHHHHhHHh
Q psy5931 93 IGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEA 126 (173)
Q Consensus 93 Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~ 126 (173)
+|++|+|...|..|+.++|+.+.+|..=|..+..
T Consensus 111 ~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 111 AGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYY 144 (296)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999887776543
No 16
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.19 E-value=0.018 Score=43.88 Aligned_cols=111 Identities=14% Similarity=0.084 Sum_probs=68.0
Q ss_pred HHHHHHhCCChHHHHHHHHhhcCC-CCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHH
Q psy5931 5 FGKIARKHHLTSVCLDSLFRLYTI-PSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFY 83 (173)
Q Consensus 5 fa~iARkh~l~~vc~~~L~ki~~l-p~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~ 83 (173)
.|.+....|-++-++..+.+...+ |..+ ++ ....+.++.++ +++.++++..+..-- ....+...+.+
T Consensus 71 la~~~~~~~~~~~A~~~~~~al~~~~~~~--~~---~~~~~~~~~~~------g~~~~A~~~~~~~~~-~~~~~~~~~~~ 138 (234)
T TIGR02521 71 LALYYQQLGELEKAEDSFRRALTLNPNNG--DV---LNNYGTFLCQQ------GKYEQAMQQFEQAIE-DPLYPQPARSL 138 (234)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCH--HH---HHHHHHHHHHc------ccHHHHHHHHHHHHh-ccccccchHHH
Confidence 444555555555555555554433 2111 11 12224455543 345556555555421 12234456677
Q ss_pred HHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhh
Q psy5931 84 ALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQ 127 (173)
Q Consensus 84 ~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~ 127 (173)
...|..+...|++++|.+.|..+++..|..+.+|..+|......
T Consensus 139 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 182 (234)
T TIGR02521 139 ENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLR 182 (234)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHc
Confidence 77899999999999999999999999998888888888776654
No 17
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.13 E-value=0.012 Score=45.38 Aligned_cols=111 Identities=12% Similarity=0.042 Sum_probs=85.2
Q ss_pred HHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHH
Q psy5931 4 QFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFY 83 (173)
Q Consensus 4 ~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~ 83 (173)
..|.+....|-++-++..+.+.-.+. -.-.++. ...+.++... +++.++++..+..-- -.+.-++.+
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~---~~lg~~~~~~------g~~~~A~~~y~~Al~---l~p~~~~a~ 95 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAH---IALAGTWMML------KEYTTAINFYGHALM---LDASHPEPV 95 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHH---HHHHHHHHHH------hhHHHHHHHHHHHHh---cCCCCcHHH
Confidence 35777888888888888888865542 2223333 4456666663 577788877777664 457789999
Q ss_pred HHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhh
Q psy5931 84 ALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQ 127 (173)
Q Consensus 84 ~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~ 127 (173)
...|..+.++|++++|.+.|..|+.+.|+.+..|..=|..+..+
T Consensus 96 ~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 96 YQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998777665543
No 18
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.11 E-value=0.0048 Score=45.38 Aligned_cols=101 Identities=12% Similarity=0.024 Sum_probs=76.2
Q ss_pred HHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHH
Q psy5931 40 IRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWAL 119 (173)
Q Consensus 40 lrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~ 119 (173)
+...+.++++. +.+.++++.++..-- ..+...+++...|.++.++|++++|...|..++.++|+.+..|..
T Consensus 20 ~~~~a~~~~~~------~~~~~A~~~~~~~~~---~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 90 (135)
T TIGR02552 20 IYALAYNLYQQ------GRYDEALKLFQLLAA---YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFH 90 (135)
T ss_pred HHHHHHHHHHc------ccHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 44667888874 457777777765422 124567899999999999999999999999999999999999988
Q ss_pred HHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCCCchh
Q psy5931 120 WGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKESMS 162 (173)
Q Consensus 120 WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~~~k~ 162 (173)
=|......- + ...|+.-|-.+.+.+.+...
T Consensus 91 la~~~~~~g--~-----------~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 91 AAECLLALG--E-----------PESALKALDLAIEICGENPE 120 (135)
T ss_pred HHHHHHHcC--C-----------HHHHHHHHHHHHHhccccch
Confidence 887666553 1 35677788888877654443
No 19
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.10 E-value=0.00068 Score=39.38 Aligned_cols=33 Identities=30% Similarity=0.377 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHccchh
Q psy5931 80 AEFYALKGMLLAQIGRSAEANKAFSAAVQMHDV 112 (173)
Q Consensus 80 aE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~ 112 (173)
++.+.++|.++.++|+.++|.+.|..|++++|+
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 578999999999999999999999999999874
No 20
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.06 E-value=0.007 Score=38.47 Aligned_cols=94 Identities=17% Similarity=0.090 Sum_probs=68.1
Q ss_pred HHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHH
Q psy5931 41 RQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALW 120 (173)
Q Consensus 41 rEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~W 120 (173)
...+.++++. +++.++++.++..-- .. +...+.+...|.++...|++++|.+.|..++.+.|..+..|..+
T Consensus 4 ~~~a~~~~~~------~~~~~A~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 74 (100)
T cd00189 4 LNLGNLYYKL------GDYDEALEYYEKALE-LD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNL 74 (100)
T ss_pred HHHHHHHHHH------hcHHHHHHHHHHHHh-cC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHH
Confidence 4567777764 567777777765422 11 11237889999999999999999999999999999999899888
Q ss_pred HHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchh
Q psy5931 121 GDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRH 156 (173)
Q Consensus 121 G~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~ 156 (173)
|........ -..|...+.++.+.
T Consensus 75 ~~~~~~~~~-------------~~~a~~~~~~~~~~ 97 (100)
T cd00189 75 GLAYYKLGK-------------YEEALEAYEKALEL 97 (100)
T ss_pred HHHHHHHHh-------------HHHHHHHHHHHHcc
Confidence 887665531 23466666665544
No 21
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.91 E-value=0.018 Score=42.28 Aligned_cols=102 Identities=13% Similarity=0.094 Sum_probs=76.9
Q ss_pred hhHHHHHHHhCCChHHHHHHHHhhcCC-CCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhH
Q psy5931 2 IIQFGKIARKHHLTSVCLDSLFRLYTI-PSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTA 80 (173)
Q Consensus 2 ~~~fa~iARkh~l~~vc~~~L~ki~~l-p~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qka 80 (173)
+...|..+.+.|-++-|+..+.++..+ |. -.++. ...+.|++.+ +++.+++.+++..-- . .+...
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~---~~la~~~~~~------~~~~~A~~~~~~~~~-~--~p~~~ 85 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDPY--NSRYW---LGLAACCQML------KEYEEAIDAYALAAA-L--DPDDP 85 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCC--cHHHH---HHHHHHHHHH------HHHHHHHHHHHHHHh-c--CCCCh
Confidence 356778888889999999999997664 32 12232 2447788875 567777777765422 1 25568
Q ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHH
Q psy5931 81 EFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAW 117 (173)
Q Consensus 81 E~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW 117 (173)
+++...|.++...|+.++|.+.|..+++++|..+..+
T Consensus 86 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 86 RPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 8999999999999999999999999999999877655
No 22
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.88 E-value=0.0038 Score=41.28 Aligned_cols=63 Identities=22% Similarity=0.279 Sum_probs=52.2
Q ss_pred HHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhC-CchHHHHHHHHHHccch
Q psy5931 40 IRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIG-RSAEANKAFSAAVQMHD 111 (173)
Q Consensus 40 lrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg-~~deA~~~F~~Avql~~ 111 (173)
....+.|++++ +++.++++..+..--- .+..++.+..+|..+.++| ++++|-+.|.+|++++|
T Consensus 6 ~~~~g~~~~~~------~~~~~A~~~~~~ai~~---~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 6 WYNLGQIYFQQ------GDYEEAIEYFEKAIEL---DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHT------THHHHHHHHHHHHHHH---STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHc------CCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45678888884 6788888877766542 3556889999999999999 79999999999999987
No 23
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.85 E-value=0.002 Score=37.03 Aligned_cols=33 Identities=27% Similarity=0.319 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHccchh
Q psy5931 80 AEFYALKGMLLAQIGRSAEANKAFSAAVQMHDV 112 (173)
Q Consensus 80 aE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~ 112 (173)
|+.+...|.++.++|++++|-+.|..|++++|+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 688999999999999999999999999999986
No 24
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=96.83 E-value=0.023 Score=52.02 Aligned_cols=67 Identities=16% Similarity=0.194 Sum_probs=49.5
Q ss_pred HHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhh
Q psy5931 58 QLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQ 127 (173)
Q Consensus 58 el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~ 127 (173)
++.+++++++..- +. .+...+.+...|..+.+.|++++|...|..++.++|..+.+|...|..+.+.
T Consensus 582 ~~~~A~~~~~~~~-~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 648 (899)
T TIGR02917 582 QLKKALAILNEAA-DA--APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVM 648 (899)
T ss_pred CHHHHHHHHHHHH-Hc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 4555565555432 11 1334678888899999999999999999999999998888888888877654
No 25
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.80 E-value=0.017 Score=40.75 Aligned_cols=92 Identities=16% Similarity=0.079 Sum_probs=66.9
Q ss_pred hHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhh---HHHHHHHHHhHHhhcCCCCC
Q psy5931 57 NQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVM---VKAWALWGDYMEAQFTNPSP 133 (173)
Q Consensus 57 ~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~---~kaW~~WG~~~d~~f~~~~~ 133 (173)
+++.++++.++..--.+-..+..++.....|..+.+.|++++|.+.|..+++.+|+. +.+|...|....++-.
T Consensus 16 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~---- 91 (119)
T TIGR02795 16 GDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGD---- 91 (119)
T ss_pred CCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCC----
Confidence 456667666655432222334456788889999999999999999999999998875 6788888888765421
Q ss_pred CCCCchhhhHHHHHHHHHHHchhCCCch
Q psy5931 134 PGSAPNMVLGVFAVTCFMHACRHQKESM 161 (173)
Q Consensus 134 ~~~~~~~~~~~~Ai~CyLqA~~~~~~~k 161 (173)
-..|+.+|-+++..+.+..
T Consensus 92 ---------~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 92 ---------KEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred ---------hHHHHHHHHHHHHHCcCCh
Confidence 3557888888887755443
No 26
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.79 E-value=0.014 Score=45.77 Aligned_cols=109 Identities=13% Similarity=0.006 Sum_probs=73.8
Q ss_pred HHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHH
Q psy5931 43 QVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGD 122 (173)
Q Consensus 43 q~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~ 122 (173)
.+.++.. .+++.++++..+..-=..-.++..+..+...|..+.++|++++|.+.|..|++++|..+.+|...|.
T Consensus 41 lg~~~~~------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 41 DGMSAQA------DGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHH------cCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 3555554 3556677776664421122334567889999999999999999999999999999999999998888
Q ss_pred hHHhhcCCCC-CCCCCchhhhHHHHHHHHHHHchhC
Q psy5931 123 YMEAQFTNPS-PPGSAPNMVLGVFAVTCFMHACRHQ 157 (173)
Q Consensus 123 ~~d~~f~~~~-~~~~~~~~~~~~~Ai~CyLqA~~~~ 157 (173)
.+..+-.... .......+..-..|+.+|-++.+..
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 7766532110 0001123444566777777777663
No 27
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=96.78 E-value=0.066 Score=45.91 Aligned_cols=29 Identities=14% Similarity=0.287 Sum_probs=18.8
Q ss_pred hHHHHHHHhCCChHHHHHHHHhhcCCCCC
Q psy5931 3 IQFGKIARKHHLTSVCLDSLFRLYTIPSV 31 (173)
Q Consensus 3 ~~fa~iARkh~l~~vc~~~L~ki~~lp~i 31 (173)
..+|.+.+.+|-++-++..+.++...|..
T Consensus 73 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 101 (389)
T PRK11788 73 LALGNLFRRRGEVDRAIRIHQNLLSRPDL 101 (389)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHhcCCCC
Confidence 34566667777777777777776665543
No 28
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=96.77 E-value=0.021 Score=53.35 Aligned_cols=130 Identities=9% Similarity=-0.014 Sum_probs=95.8
Q ss_pred hHHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHH
Q psy5931 3 IQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEF 82 (173)
Q Consensus 3 ~~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~ 82 (173)
+.+|.+....|-++-++..+.+...+. -.-.+++ ...+.+|+.+ +++.+++...+..-- ..+...+.
T Consensus 369 ~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~---~~lg~~~~~~------g~~~~A~~~~~kal~---l~P~~~~~ 435 (615)
T TIGR00990 369 IKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIY---YHRAQLHFIK------GEFAQAGKDYQKSID---LDPDFIFS 435 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH---HHHHHHHHHc------CCHHHHHHHHHHHHH---cCccCHHH
Confidence 567888888899999999999876652 1222333 3457778774 456677776665432 12345567
Q ss_pred HHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCC
Q psy5931 83 YALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQK 158 (173)
Q Consensus 83 ~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~ 158 (173)
+...|.++.++|++++|...|..++..+|+.+.+|...|..+..+- --..|+.+|-+|+.+..
T Consensus 436 ~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g-------------~~~~A~~~~~~Al~l~p 498 (615)
T TIGR00990 436 HIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQN-------------KFDEAIEKFDTAIELEK 498 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc-------------CHHHHHHHHHHHHhcCC
Confidence 8889999999999999999999999999999999988888776542 13568888888887643
No 29
>KOG1173|consensus
Probab=96.70 E-value=0.0033 Score=59.65 Aligned_cols=68 Identities=22% Similarity=0.304 Sum_probs=55.7
Q ss_pred hhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchh
Q psy5931 77 EMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRH 156 (173)
Q Consensus 77 ~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~ 156 (173)
|.++-=|.==|++.--+|+++||-+.||.|++|+++++.||.-.|+-.-.. . -..|||+||--|+|+
T Consensus 309 P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e----~---------EhdQAmaaY~tAarl 375 (611)
T KOG1173|consen 309 PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGE----G---------EHDQAMAAYFTAARL 375 (611)
T ss_pred CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhc----c---------hHHHHHHHHHHHHHh
Confidence 445555666799999999999999999999999999999999998753222 1 357899999999986
Q ss_pred C
Q psy5931 157 Q 157 (173)
Q Consensus 157 ~ 157 (173)
-
T Consensus 376 ~ 376 (611)
T KOG1173|consen 376 M 376 (611)
T ss_pred c
Confidence 3
No 30
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.63 E-value=0.0048 Score=40.51 Aligned_cols=60 Identities=25% Similarity=0.168 Sum_probs=50.7
Q ss_pred HHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhC
Q psy5931 85 LKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQ 157 (173)
Q Consensus 85 LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~ 157 (173)
.+|..+.+.|++++|-..|..++..+|..+.+|...|..+..+-. -..|+.-|-+++..+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~-------------~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGR-------------YDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT--------------HHHHHHHHHHHHHHS
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHHC
Confidence 478999999999999999999999999999999999999887631 245777777777664
No 31
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.62 E-value=0.066 Score=33.82 Aligned_cols=97 Identities=19% Similarity=0.264 Sum_probs=71.5
Q ss_pred hhHHHHHHHhCCChHHHHHHHHhhcCC-CCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhH
Q psy5931 2 IIQFGKIARKHHLTSVCLDSLFRLYTI-PSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTA 80 (173)
Q Consensus 2 ~~~fa~iARkh~l~~vc~~~L~ki~~l-p~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qka 80 (173)
....|.+...+|-++-++..+.++..+ |+-+ ++ ....+.|+... +++..+++.++..--. .+...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~------~~~~~a~~~~~~~~~~---~~~~~ 68 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNA--DA---YYNLAAAYYKL------GKYEEALEDYEKALEL---DPDNA 68 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH--HH---HHHHHHHHHHH------HHHHHHHHHHHHHHhC---CCcch
Confidence 356788888899999999999987654 3322 22 34467788774 5677888877654321 12233
Q ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHccchh
Q psy5931 81 EFYALKGMLLAQIGRSAEANKAFSAAVQMHDV 112 (173)
Q Consensus 81 E~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~ 112 (173)
+.+...|.++...|++++|...|..++..+|+
T Consensus 69 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 69 KAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 78899999999999999999999999988763
No 32
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.60 E-value=0.004 Score=41.51 Aligned_cols=57 Identities=23% Similarity=0.279 Sum_probs=48.4
Q ss_pred hhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHH
Q psy5931 56 KNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVK 115 (173)
Q Consensus 56 ~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~k 115 (173)
.+++.+++++++..-- ..|....++..+|.++.++|++++|.+.|..+++.+|+.+.
T Consensus 8 ~~~~~~A~~~~~~~l~---~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 8 QEDYEEALEVLERALE---LDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred CCCHHHHHHHHHHHHH---hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 3568888888887655 35668899999999999999999999999999999997554
No 33
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=96.53 E-value=0.06 Score=40.98 Aligned_cols=113 Identities=11% Similarity=0.048 Sum_probs=80.9
Q ss_pred hHHHHHHHhCCChHHHHHHHHhhcCCCCCcH-HHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHH
Q psy5931 3 IQFGKIARKHHLTSVCLDSLFRLYTIPSVPI-VDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAE 81 (173)
Q Consensus 3 ~~fa~iARkh~l~~vc~~~L~ki~~lp~i~v-~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE 81 (173)
..+|.+...+|-++-++..+.+....|..+. .+. ....+.|++.. +++.++.+.++..-- . .+...+
T Consensus 103 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~------g~~~~A~~~~~~~~~-~--~~~~~~ 170 (234)
T TIGR02521 103 NNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARS---LENAGLCALKA------GDFDKAEKYLTRALQ-I--DPQRPE 170 (234)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhccccccchHH---HHHHHHHHHHc------CCHHHHHHHHHHHHH-h--CcCChH
Confidence 4578888889999999999999877654321 122 23347777774 345555555544321 1 223467
Q ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhh
Q psy5931 82 FYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQ 127 (173)
Q Consensus 82 ~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~ 127 (173)
.+...|.++.+.|++++|...|..++++.|..+..|...+......
T Consensus 171 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (234)
T TIGR02521 171 SLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARAL 216 (234)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999888888887777666554
No 34
>KOG0553|consensus
Probab=96.48 E-value=0.02 Score=50.73 Aligned_cols=105 Identities=14% Similarity=0.126 Sum_probs=75.0
Q ss_pred HHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHH
Q psy5931 38 EKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAW 117 (173)
Q Consensus 38 ~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW 117 (173)
..+=|+.||-=.... .-+.|+++++.-+..-. -.+-.|-+|..|+-.+++||.+++|-+.-.+|+++||.+.|+|
T Consensus 78 ~~~AE~LK~eGN~~m--~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay 152 (304)
T KOG0553|consen 78 KALAESLKNEGNKLM--KNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAY 152 (304)
T ss_pred HHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHH
Confidence 344555665432111 13458888876655433 3567789999999999999999999999999999999999999
Q ss_pred HHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCCCc
Q psy5931 118 ALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKES 160 (173)
Q Consensus 118 ~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~~~ 160 (173)
..-|.-...+-. -+.|+..|=.|.-++.+.
T Consensus 153 ~RLG~A~~~~gk-------------~~~A~~aykKaLeldP~N 182 (304)
T KOG0553|consen 153 GRLGLAYLALGK-------------YEEAIEAYKKALELDPDN 182 (304)
T ss_pred HHHHHHHHccCc-------------HHHHHHHHHhhhccCCCc
Confidence 888876655521 234666677777665443
No 35
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.44 E-value=0.045 Score=48.50 Aligned_cols=111 Identities=10% Similarity=0.075 Sum_probs=81.6
Q ss_pred HHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHH
Q psy5931 4 QFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFY 83 (173)
Q Consensus 4 ~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~ 83 (173)
.-|.-|.+.|-++-|+..+.+.-.+-. .-.+++ ...+.||+.+ +++.+++..++..-- -.+..++.|
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~---~~~a~~~~~~------g~~~eAl~~~~~Al~---l~P~~~~a~ 73 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDP-NNAELY---ADRAQANIKL------GNFTEAVADANKAIE---LDPSLAKAY 73 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHH---HHHHHHHHHc------CCHHHHHHHHHHHHH---hCcCCHHHH
Confidence 446778888999999999999766421 112233 4568888885 567777777766522 134567889
Q ss_pred HHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhc
Q psy5931 84 ALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQF 128 (173)
Q Consensus 84 ~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f 128 (173)
..+|..+..+|++++|...|..|+.++|+.+.+.... ..|+...
T Consensus 74 ~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l-~~~~~kl 117 (356)
T PLN03088 74 LRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLI-KECDEKI 117 (356)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH
Confidence 9999999999999999999999999999988776544 4444444
No 36
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.41 E-value=0.023 Score=39.38 Aligned_cols=82 Identities=20% Similarity=0.314 Sum_probs=57.8
Q ss_pred CCChHHHHHHHHhhcCCCCC-cHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHH
Q psy5931 12 HHLTSVCLDSLFRLYTIPSV-PIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLL 90 (173)
Q Consensus 12 h~l~~vc~~~L~ki~~lp~i-~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl 90 (173)
+|-++-++....++.....- +-.+... ..+.||+++ +++.+++++++.-.+ .+. ..+...+.|..+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~---~la~~~~~~------~~y~~A~~~~~~~~~---~~~-~~~~~~l~a~~~ 68 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLY---NLAQCYFQQ------GKYEEAIELLQKLKL---DPS-NPDIHYLLARCL 68 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHH---HHHHHHHHT------THHHHHHHHHHCHTH---HHC-HHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHH---HHHHHHHHC------CCHHHHHHHHHHhCC---CCC-CHHHHHHHHHHH
Confidence 46677888888888774322 1222222 269999995 789999999988222 232 356666779999
Q ss_pred HHhCCchHHHHHHHHH
Q psy5931 91 AQIGRSAEANKAFSAA 106 (173)
Q Consensus 91 ~~Lg~~deA~~~F~~A 106 (173)
.++|++|||-+.|..|
T Consensus 69 ~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 69 LKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHTT-HHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHhcC
Confidence 9999999999999765
No 37
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=96.37 E-value=0.1 Score=47.78 Aligned_cols=109 Identities=19% Similarity=0.207 Sum_probs=74.3
Q ss_pred HHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHH
Q psy5931 5 FGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYA 84 (173)
Q Consensus 5 fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~ 84 (173)
+|++-.+.|=++-++..+.+.-.... +-.+ -....++|++.. +.+.++++++...... .++..++.+.
T Consensus 62 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~---~~~~~a~~~~~~------g~~~~a~~~~~~~~~~--~~~~~~~~~~ 129 (899)
T TIGR02917 62 LGKIYLALGDYAAAEKELRKALSLGY-PKNQ---VLPLLARAYLLQ------GKFQQVLDELPGKTLL--DDEGAAELLA 129 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC-Chhh---hHHHHHHHHHHC------CCHHHHHHhhcccccC--CchhhHHHHH
Confidence 45555555555555555555443211 1111 123445666653 4577778777655421 4677899999
Q ss_pred HHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHH
Q psy5931 85 LKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYME 125 (173)
Q Consensus 85 LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d 125 (173)
+.|..+.++|++++|.+.|..+++.+|+.+.+|..-|...-
T Consensus 130 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 170 (899)
T TIGR02917 130 LRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLAL 170 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 99999999999999999999999999998888877776543
No 38
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=96.21 E-value=0.14 Score=43.84 Aligned_cols=115 Identities=20% Similarity=0.150 Sum_probs=80.3
Q ss_pred hHHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCC--chhhH
Q psy5931 3 IQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLT--KEMTA 80 (173)
Q Consensus 3 ~~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~--~~qka 80 (173)
+.+|.+..+.|-++-++..+.++..++. +-.++. ...+.++.+. +++.++++.+...--..-. ..+.+
T Consensus 111 ~~La~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~---~~la~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~~~~ 180 (389)
T PRK11788 111 QELGQDYLKAGLLDRAEELFLQLVDEGD-FAEGAL---QQLLEIYQQE------KDWQKAIDVAERLEKLGGDSLRVEIA 180 (389)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCc-chHHHH---HHHHHHHHHh------chHHHHHHHHHHHHHhcCCcchHHHH
Confidence 4567777888999999999999876532 222333 3345566653 4566666665543111111 12356
Q ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhh
Q psy5931 81 EFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQ 127 (173)
Q Consensus 81 E~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~ 127 (173)
.++...|..+.+.|+.++|.+.|..++.++|+.+.+|..-|....+.
T Consensus 181 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 227 (389)
T PRK11788 181 HFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQ 227 (389)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHC
Confidence 67788899999999999999999999999999999998888876664
No 39
>PRK12370 invasion protein regulator; Provisional
Probab=96.16 E-value=0.026 Score=52.51 Aligned_cols=67 Identities=9% Similarity=0.016 Sum_probs=53.6
Q ss_pred HHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhh
Q psy5931 58 QLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQ 127 (173)
Q Consensus 58 el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~ 127 (173)
++.++++.++..-- -.+..++.+...|.++...|++++|...|..|+.++|+.+.+|..-|..+...
T Consensus 319 ~~~~A~~~~~~Al~---ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~ 385 (553)
T PRK12370 319 AMIKAKEHAIKATE---LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMA 385 (553)
T ss_pred HHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 45566666554322 24667888999999999999999999999999999999999998888776655
No 40
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.03 E-value=0.15 Score=43.02 Aligned_cols=98 Identities=15% Similarity=0.203 Sum_probs=81.1
Q ss_pred hHHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHH
Q psy5931 3 IQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEF 82 (173)
Q Consensus 3 ~~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~ 82 (173)
..+|+..=..|=.+.++.+|+..-+.|.=+.--+..++|- ++-.+| .+++.+||..++...=+-| .+-.
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRL-Arvq~q------~~k~D~AL~~L~t~~~~~w----~~~~ 161 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRL-ARVQLQ------QKKADAALKTLDTIKEESW----AAIV 161 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHH-HHHHHH------hhhHHHHHHHHhccccccH----HHHH
Confidence 4578888888889999999998888876666667777775 566666 4789999999998876444 6677
Q ss_pred HHHHHHHHHHhCCchHHHHHHHHHHccch
Q psy5931 83 YALKGMLLAQIGRSAEANKAFSAAVQMHD 111 (173)
Q Consensus 83 ~~LKG~fl~~Lg~~deA~~~F~~Avql~~ 111 (173)
.-+||.++...|+.++|-.+|..|++..+
T Consensus 162 ~elrGDill~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 162 AELRGDILLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HHHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence 78999999999999999999999999954
No 41
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.88 E-value=0.017 Score=53.68 Aligned_cols=70 Identities=23% Similarity=0.156 Sum_probs=59.5
Q ss_pred CchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHH---HHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHH
Q psy5931 75 TKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKA---WALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFM 151 (173)
Q Consensus 75 ~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~ka---W~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyL 151 (173)
.++..++-+...|..+.++|++|||-..|..|+.++|+.+.+ |..=|-.+-.+-. ...|+.||-
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr-------------~dEAla~Lr 136 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREE-------------GKKAADCLR 136 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCC-------------HHHHHHHHH
Confidence 467889999999999999999999999999999999998865 8888877777642 356888888
Q ss_pred HHchhC
Q psy5931 152 HACRHQ 157 (173)
Q Consensus 152 qA~~~~ 157 (173)
+|+..+
T Consensus 137 rALels 142 (453)
T PLN03098 137 TALRDY 142 (453)
T ss_pred HHHHhc
Confidence 888763
No 42
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=95.88 E-value=0.06 Score=43.54 Aligned_cols=108 Identities=9% Similarity=0.029 Sum_probs=76.6
Q ss_pred CCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHH
Q psy5931 28 IPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAV 107 (173)
Q Consensus 28 lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Av 107 (173)
|-+|.|+|-...+-..+--+++ ..++.++-.+..-+-+ -++..++.|.-=|+.+..+|++++|-.+|+.|.
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~------~G~l~~A~~~f~~L~~---~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~ 96 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLME------VKEFAGAARLFQLLTI---YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAA 96 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4456777777777777776676 3567777777776666 455667778888888888888888888888888
Q ss_pred ccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhC
Q psy5931 108 QMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQ 157 (173)
Q Consensus 108 ql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~ 157 (173)
+++|+.|.+--.=|.-+-.+-. ...|..||-.|+...
T Consensus 97 ~L~~ddp~~~~~ag~c~L~lG~-------------~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 97 QIKIDAPQAPWAAAECYLACDN-------------VCYAIKALKAVVRIC 133 (157)
T ss_pred hcCCCCchHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHHh
Confidence 8888888776555544333321 345777888887765
No 43
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=95.84 E-value=0.16 Score=40.86 Aligned_cols=109 Identities=17% Similarity=0.105 Sum_probs=73.4
Q ss_pred HHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHH---
Q psy5931 39 KIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVK--- 115 (173)
Q Consensus 39 KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~k--- 115 (173)
..-+.+.++++. +++.+++..++..--.+-..+...+.+...|..+.+.|++++|...|..++..+|+.+.
T Consensus 35 ~~~~~g~~~~~~------~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 35 ELYEEAKEALDS------GDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred HHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 334556677764 56778888887763333333455567888899999999999999999999999997776
Q ss_pred HHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCC
Q psy5931 116 AWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQK 158 (173)
Q Consensus 116 aW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~ 158 (173)
+|..=|......+...- .+..-...|+.-|-.+++.+.
T Consensus 109 a~~~~g~~~~~~~~~~~-----~~~~~~~~A~~~~~~~~~~~p 146 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVD-----RDQTAAREAFEAFQELIRRYP 146 (235)
T ss_pred HHHHHHHHHHHhccccc-----CCHHHHHHHHHHHHHHHHHCC
Confidence 56555666555432110 122234567777777766543
No 44
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=95.84 E-value=0.26 Score=39.63 Aligned_cols=109 Identities=13% Similarity=-0.031 Sum_probs=79.7
Q ss_pred hHHHHHHHhCCChHHHHHHHHhhcCC-CCC-cHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhH
Q psy5931 3 IQFGKIARKHHLTSVCLDSLFRLYTI-PSV-PIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTA 80 (173)
Q Consensus 3 ~~fa~iARkh~l~~vc~~~L~ki~~l-p~i-~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qka 80 (173)
...|....+.|-++.++..+.++... |+= ...++... .+.||+++ +++.++++..+..-=.+-+.+...
T Consensus 37 ~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~---la~~~~~~------~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 37 YEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLD---LAYAYYKS------GDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHH---HHHHHHhc------CCHHHHHHHHHHHHHHCcCCCchH
Confidence 34566677888899999999987653 422 23345433 37888885 578888888877654444444555
Q ss_pred HHHHHHHHHHHHh--------CCchHHHHHHHHHHccchhhHHHHHHH
Q psy5931 81 EFYALKGMLLAQI--------GRSAEANKAFSAAVQMHDVMVKAWALW 120 (173)
Q Consensus 81 E~~~LKG~fl~~L--------g~~deA~~~F~~Avql~~~~~kaW~~W 120 (173)
+-+.+.|..+.+. |+.++|.+.|..++..+|..+.+|...
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~ 155 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAK 155 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHH
Confidence 6688899999887 889999999999999999988776444
No 45
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=95.76 E-value=0.3 Score=47.35 Aligned_cols=134 Identities=12% Similarity=-0.045 Sum_probs=87.0
Q ss_pred HHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhcccc------------
Q psy5931 5 FGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLK------------ 72 (173)
Q Consensus 5 fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~------------ 72 (173)
+|.+....|-++-++..+.++...+.............-+..+++ .+++.+++++++..--.
T Consensus 278 la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~------~g~~~eA~~~l~~~~~~~P~~~~~~~~~~ 351 (765)
T PRK10049 278 VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLE------SENYPGALTVTAHTINNSPPFLRLYGSPT 351 (765)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHh------cccHHHHHHHHHHHhhcCCceEeecCCCC
Confidence 455566667777777777777655432211111111122223333 34567777665533211
Q ss_pred CCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHH
Q psy5931 73 YLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMH 152 (173)
Q Consensus 73 ~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLq 152 (173)
--..++..+.+.++|.++...|+.++|-+.|..++...|..+.+|..-|.....+-. -..|+..|-+
T Consensus 352 ~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~-------------~~~A~~~l~~ 418 (765)
T PRK10049 352 SIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGW-------------PRAAENELKK 418 (765)
T ss_pred CCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC-------------HHHHHHHHHH
Confidence 112336678899999999999999999999999999999999999999987766532 2456666666
Q ss_pred HchhC
Q psy5931 153 ACRHQ 157 (173)
Q Consensus 153 A~~~~ 157 (173)
|....
T Consensus 419 al~l~ 423 (765)
T PRK10049 419 AEVLE 423 (765)
T ss_pred HHhhC
Confidence 66653
No 46
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=95.75 E-value=0.029 Score=36.73 Aligned_cols=63 Identities=14% Similarity=0.114 Sum_probs=51.9
Q ss_pred hHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHH
Q psy5931 57 NQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGD 122 (173)
Q Consensus 57 ~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~ 122 (173)
+++.++++.++..-- ..|+..++...-|.++.+.|++++|.+.+...+..+|+.+..|..|+.
T Consensus 5 ~~~~~A~~~~~~~l~---~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 5 GDYDEAIELLEKALQ---RNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp THHHHHHHHHHHHHH---HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 567788888877643 245578888899999999999999999999999999999998888765
No 47
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=95.74 E-value=0.067 Score=43.61 Aligned_cols=47 Identities=19% Similarity=0.154 Sum_probs=30.5
Q ss_pred hhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHh
Q psy5931 77 EMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDY 123 (173)
Q Consensus 77 ~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~ 123 (173)
+..++.+...|..+..+|++++|..+|..|+.+.|+.+..|...|..
T Consensus 70 P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~a 116 (198)
T PRK10370 70 PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATV 116 (198)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 44456666666666666666666666666666666666666666653
No 48
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=95.73 E-value=0.1 Score=40.44 Aligned_cols=86 Identities=16% Similarity=0.030 Sum_probs=63.4
Q ss_pred CCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchh---hHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHH
Q psy5931 73 YLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDV---MVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTC 149 (173)
Q Consensus 73 ~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~---~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~C 149 (173)
.=..+.+++.+...|..+...|++++|...|..|+.+.+. .+-+|...|..+...- .-..|+.+
T Consensus 28 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g-------------~~~eA~~~ 94 (168)
T CHL00033 28 TTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNG-------------EHTKALEY 94 (168)
T ss_pred CCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcC-------------CHHHHHHH
Confidence 4466778999999999999999999999999999998765 4458888888777663 23568888
Q ss_pred HHHHchhCC-CchhhhhHHHHhh
Q psy5931 150 FMHACRHQK-ESMSRKYLAKVDY 171 (173)
Q Consensus 150 yLqA~~~~~-~~k~Rk~laRiLW 171 (173)
|-+|.+... ...+...++.|.+
T Consensus 95 ~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 95 YFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHhCcCcHHHHHHHHHHHH
Confidence 888876532 2233344455444
No 49
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=95.67 E-value=0.086 Score=42.97 Aligned_cols=95 Identities=18% Similarity=0.184 Sum_probs=74.1
Q ss_pred hhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHH-HHhCC--chHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCC
Q psy5931 56 KNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLL-AQIGR--SAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPS 132 (173)
Q Consensus 56 ~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl-~~Lg~--~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~ 132 (173)
.+++.++++..+..-- -.+..++++...|..+ ...|+ +++|.+.|..|+..+|+.+.+|..-|......-.
T Consensus 86 ~g~~~~A~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~--- 159 (198)
T PRK10370 86 RNDYDNALLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQAD--- 159 (198)
T ss_pred CCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCC---
Confidence 3456677777765433 2356899999999965 78888 5999999999999999999999999988776531
Q ss_pred CCCCCchhhhHHHHHHHHHHHchhCCCchhhhhH
Q psy5931 133 PPGSAPNMVLGVFAVTCFMHACRHQKESMSRKYL 166 (173)
Q Consensus 133 ~~~~~~~~~~~~~Ai~CyLqA~~~~~~~k~Rk~l 166 (173)
-..|+.+|-.+.....+.-.|.-+
T Consensus 160 ----------~~~Ai~~~~~aL~l~~~~~~r~~~ 183 (198)
T PRK10370 160 ----------YAQAIELWQKVLDLNSPRVNRTQL 183 (198)
T ss_pred ----------HHHHHHHHHHHHhhCCCCccHHHH
Confidence 356999999999887776666543
No 50
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=95.67 E-value=0.36 Score=48.87 Aligned_cols=113 Identities=12% Similarity=0.055 Sum_probs=80.2
Q ss_pred hHHHHHHHhCCChHHHHHHHHhhcCC-CCCc-HHHH--------HHHHHHHHHHHhhhhccCChhHHHHHHHHhhhcccc
Q psy5931 3 IQFGKIARKHHLTSVCLDSLFRLYTI-PSVP-IVDC--------FEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLK 72 (173)
Q Consensus 3 ~~fa~iARkh~l~~vc~~~L~ki~~l-p~i~-v~da--------F~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~ 72 (173)
..+|.+..+.|-++-++..+.+...+ |.-+ .... +.....++.+++.. .++.++++.++..--.
T Consensus 307 ~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~------g~~~eA~~~~~~Al~~ 380 (1157)
T PRK11447 307 GALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKA------NNLAQAERLYQQARQV 380 (1157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHh
Confidence 45778888888899999998887653 3322 1111 12223445566653 4566666666554432
Q ss_pred CCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhH
Q psy5931 73 YLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYM 124 (173)
Q Consensus 73 ~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~ 124 (173)
.+..++.+...|.++.+.|++++|.+.|..|+.++|..+.+|..++...
T Consensus 381 ---~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 381 ---DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY 429 (1157)
T ss_pred ---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3345667788899999999999999999999999999999998888765
No 51
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=95.65 E-value=0.18 Score=35.35 Aligned_cols=105 Identities=10% Similarity=0.077 Sum_probs=77.0
Q ss_pred hhHHHHHHHhCCChHHHHHHHHhhcC-CCC-CcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhh
Q psy5931 2 IIQFGKIARKHHLTSVCLDSLFRLYT-IPS-VPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMT 79 (173)
Q Consensus 2 ~~~fa~iARkh~l~~vc~~~L~ki~~-lp~-i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qk 79 (173)
....|....++|=++-++..+.++-. -|. ....++- ...+.++++. +++.++++.++..--.+-..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~------~~~~~A~~~~~~~~~~~p~~~~~ 75 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAH---YWLGEAYYAQ------GKYADAAKAFLAVVKKYPKSPKA 75 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHH---HHHHHHHHhh------ccHHHHHHHHHHHHHHCCCCCcc
Confidence 34567778888888888888888744 232 2222332 3367888874 56888888888655434334456
Q ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHH
Q psy5931 80 AEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVK 115 (173)
Q Consensus 80 aE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~k 115 (173)
++.+...|.++.++|+.++|.+.|..++...|+.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 76 PDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred cHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 788999999999999999999999999999887553
No 52
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=95.62 E-value=0.28 Score=49.57 Aligned_cols=64 Identities=14% Similarity=-0.003 Sum_probs=52.3
Q ss_pred hHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhh
Q psy5931 57 NQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQ 127 (173)
Q Consensus 57 ~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~ 127 (173)
+++.+++++++. .+..++.+...|..+.+.|++++|...|..+++++|..+.+|...|..+...
T Consensus 587 G~~~eA~~~l~~-------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~ 650 (1157)
T PRK11447 587 GKEAEAEALLRQ-------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQ 650 (1157)
T ss_pred CCHHHHHHHHHh-------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 346677777761 3445567788999999999999999999999999999999999998876444
No 53
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=95.44 E-value=0.084 Score=41.29 Aligned_cols=69 Identities=19% Similarity=0.093 Sum_probs=55.2
Q ss_pred CchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhh---HHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHH
Q psy5931 75 TKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVM---VKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFM 151 (173)
Q Consensus 75 ~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~---~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyL 151 (173)
..+.++..+..+|..+.+.|++++|...|..|+.+.++. +.+|...|..+.++-. -..|+.+|.
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~-------------~~~A~~~~~ 96 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGE-------------HDKALEYYH 96 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCC-------------HHHHHHHHH
Confidence 478899999999999999999999999999999987764 4577777777666531 245777777
Q ss_pred HHchh
Q psy5931 152 HACRH 156 (173)
Q Consensus 152 qA~~~ 156 (173)
+|++.
T Consensus 97 ~al~~ 101 (172)
T PRK02603 97 QALEL 101 (172)
T ss_pred HHHHh
Confidence 77775
No 54
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=95.37 E-value=0.1 Score=43.46 Aligned_cols=50 Identities=14% Similarity=0.155 Sum_probs=41.3
Q ss_pred chhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHH
Q psy5931 76 KEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYME 125 (173)
Q Consensus 76 ~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d 125 (173)
.++.+.+|...|.++.+.|+.++|...|..|+.++|+.+.++..++..+-
T Consensus 142 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li 191 (280)
T PF13429_consen 142 APDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLI 191 (280)
T ss_dssp --T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 35778999999999999999999999999999999999988888776653
No 55
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=95.35 E-value=0.24 Score=45.29 Aligned_cols=105 Identities=14% Similarity=0.132 Sum_probs=80.8
Q ss_pred HHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHH
Q psy5931 7 KIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALK 86 (173)
Q Consensus 7 ~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LK 86 (173)
++-..-+..+.|++.|.++..- ..+ +... -|++++.+ ++-.+++.+++.+-- ..++.++++.+.
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~-~pe---v~~~---LA~v~l~~------~~E~~AI~ll~~aL~---~~p~d~~LL~~Q 240 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRER-DPE---VAVL---LARVYLLM------NEEVEAIRLLNEALK---ENPQDSELLNLQ 240 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhc-CCc---HHHH---HHHHHHhc------CcHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence 3444456689999999998663 222 2222 48888875 344688999988875 355669999999
Q ss_pred HHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhh
Q psy5931 87 GMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQ 127 (173)
Q Consensus 87 G~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~ 127 (173)
+.|+-+.|++|.|-+....||.+.|..-+.|..=+...-.+
T Consensus 241 a~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~ 281 (395)
T PF09295_consen 241 AEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQL 281 (395)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999998766654444
No 56
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=95.22 E-value=0.15 Score=41.18 Aligned_cols=77 Identities=16% Similarity=0.123 Sum_probs=59.7
Q ss_pred HHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhh
Q psy5931 63 LEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVL 142 (173)
Q Consensus 63 L~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~ 142 (173)
|.++.+..+ ++.-|-++=-|..+-..|+.++|.+.|...+.++|..+..|..+|-.+-.+- -
T Consensus 23 l~~l~~~~~-----~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g-------------~ 84 (157)
T PRK15363 23 LRMLLDDDV-----TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQK-------------H 84 (157)
T ss_pred HHHHHCCCh-----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh-------------h
Confidence 455544432 4445555556888889999999999999999999999999999999887763 2
Q ss_pred HHHHHHHHHHHchhC
Q psy5931 143 GVFAVTCFMHACRHQ 157 (173)
Q Consensus 143 ~~~Ai~CyLqA~~~~ 157 (173)
-+.||.||=.|+.++
T Consensus 85 ~~~AI~aY~~A~~L~ 99 (157)
T PRK15363 85 WGEAIYAYGRAAQIK 99 (157)
T ss_pred HHHHHHHHHHHHhcC
Confidence 356888888888774
No 57
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=95.20 E-value=0.023 Score=37.24 Aligned_cols=66 Identities=17% Similarity=0.047 Sum_probs=50.0
Q ss_pred HHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCCC-chhhhhHHHH
Q psy5931 91 AQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKE-SMSRKYLAKV 169 (173)
Q Consensus 91 ~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~~-~k~Rk~laRi 169 (173)
-+.|++++|-+.|..+++.+|+.+.+|..+|..+-+.-. -..|...+-.....+.+ ......+++|
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-------------~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQ-------------YDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT--------------HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 467999999999999999999999999999999887732 34466666666665444 4555666554
No 58
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=95.16 E-value=0.15 Score=44.33 Aligned_cols=68 Identities=21% Similarity=0.233 Sum_probs=53.9
Q ss_pred hHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhh
Q psy5931 57 NQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQ 127 (173)
Q Consensus 57 ~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~ 127 (173)
..+.+++.++...-- ..+.-+|++.+.|..+.++|+.|+|...|.+|+.+.++.+..-..=|..+.=.
T Consensus 114 g~~~~A~~~~rkA~~---l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~ 181 (257)
T COG5010 114 GNFGEAVSVLRKAAR---LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLR 181 (257)
T ss_pred cchHHHHHHHHHHhc---cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHc
Confidence 346666666655544 46778999999999999999999999999999999999988887766655443
No 59
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=95.13 E-value=0.25 Score=49.88 Aligned_cols=110 Identities=11% Similarity=-0.062 Sum_probs=67.8
Q ss_pred HHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHH
Q psy5931 4 QFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFY 83 (173)
Q Consensus 4 ~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~ 83 (173)
..|.++.+.|=.+.++..+.+.-.+. .+-......+ +..... .+++.++++.+...-- . .| . ++.+
T Consensus 547 ~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~L---a~~l~~------~Gr~~eAl~~~~~AL~-l-~P-~-~~a~ 612 (987)
T PRK09782 547 AAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWL---HAQRYI------PGQPELALNDLTRSLN-I-AP-S-ANAY 612 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHH---HHHHHh------CCCHHHHHHHHHHHHH-h-CC-C-HHHH
Confidence 45667777888888877777755442 1111111111 111111 1345555555554421 1 22 2 6778
Q ss_pred HHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhh
Q psy5931 84 ALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQ 127 (173)
Q Consensus 84 ~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~ 127 (173)
...|.++.++|++++|...|..|+.++|+.+.++..+|..+...
T Consensus 613 ~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~ 656 (987)
T PRK09782 613 VARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDS 656 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 88888888888888888888888888888888888888766655
No 60
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=95.09 E-value=0.43 Score=45.63 Aligned_cols=50 Identities=26% Similarity=0.276 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHHHHHhCCchH----HHHHHHHHHccchhhHHHHHHHHHhHHhh
Q psy5931 78 MTAEFYALKGMLLAQIGRSAE----ANKAFSAAVQMHDVMVKAWALWGDYMEAQ 127 (173)
Q Consensus 78 qkaE~~~LKG~fl~~Lg~~de----A~~~F~~Avql~~~~~kaW~~WG~~~d~~ 127 (173)
..++.+...|..+...|++++ |...|..|+.++|+.+.+|...|..+...
T Consensus 244 ~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~ 297 (656)
T PRK15174 244 DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRT 297 (656)
T ss_pred CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC
Confidence 345556666777777777665 66777777777777777776666665544
No 61
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=95.02 E-value=0.39 Score=48.55 Aligned_cols=118 Identities=12% Similarity=0.034 Sum_probs=78.7
Q ss_pred CCChHHHHHHHHhhcCC-CCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHH
Q psy5931 12 HHLTSVCLDSLFRLYTI-PSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLL 90 (173)
Q Consensus 12 h~l~~vc~~~L~ki~~l-p~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl 90 (173)
.|-++.++..+.+.-.+ |+ .+++. ..+.++.++ +++.++++.++..-- ..|..++.+...|.++
T Consensus 589 ~Gr~~eAl~~~~~AL~l~P~---~~a~~---~LA~~l~~l------G~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL 653 (987)
T PRK09782 589 PGQPELALNDLTRSLNIAPS---ANAYV---ARATIYRQR------HNVPAAVSDLRAALE---LEPNNSNYQAALGYAL 653 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCC---HHHHH---HHHHHHHHC------CCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHH
Confidence 38888888888886543 43 34443 335666664 345555555544332 2455667888888888
Q ss_pred HHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhC
Q psy5931 91 AQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQ 157 (173)
Q Consensus 91 ~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~ 157 (173)
...|+.++|...|..|+.++|+.+.+|..-|..+..+.. -..|+.+|-+|+...
T Consensus 654 ~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd-------------~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 654 WDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDD-------------MAATQHYARLVIDDI 707 (987)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-------------HHHHHHHHHHHHhcC
Confidence 888888888888888888888888888888887766542 133666666666553
No 62
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=94.81 E-value=0.36 Score=41.48 Aligned_cols=92 Identities=14% Similarity=0.092 Sum_probs=70.7
Q ss_pred hHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHH---HHhHHhhcCCCCC
Q psy5931 57 NQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALW---GDYMEAQFTNPSP 133 (173)
Q Consensus 57 ~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~W---G~~~d~~f~~~~~ 133 (173)
+++.++++..+..-=.|-..+..++.+...|..+...|++++|-..|...+..+|..++....| |.....+- +
T Consensus 157 ~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g--~-- 232 (263)
T PRK10803 157 SRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG--D-- 232 (263)
T ss_pred CCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC--C--
Confidence 4677888888877777877788889999999999999999999999999999999876666555 44443321 1
Q ss_pred CCCCchhhhHHHHHHHHHHHchhCCCch
Q psy5931 134 PGSAPNMVLGVFAVTCFMHACRHQKESM 161 (173)
Q Consensus 134 ~~~~~~~~~~~~Ai~CyLqA~~~~~~~k 161 (173)
-..|..-|=+.++.+.++.
T Consensus 233 ---------~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 233 ---------TAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred ---------HHHHHHHHHHHHHHCcCCH
Confidence 3557777777777665544
No 63
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=94.61 E-value=0.34 Score=46.95 Aligned_cols=109 Identities=12% Similarity=0.033 Sum_probs=86.3
Q ss_pred hHHHHHHHhCCChHHHHHHHHhhcCC-CCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHH
Q psy5931 3 IQFGKIARKHHLTSVCLDSLFRLYTI-PSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAE 81 (173)
Q Consensus 3 ~~fa~iARkh~l~~vc~~~L~ki~~l-p~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE 81 (173)
..+|..+|+.|-.+-++..+.+...+ |.- .++. ...+.++... +++.++++.++..--. .+..++
T Consensus 53 ~~lA~~~~~~g~~~~A~~~~~~al~~~P~~--~~a~---~~la~~l~~~------g~~~eA~~~l~~~l~~---~P~~~~ 118 (765)
T PRK10049 53 AAVAVAYRNLKQWQNSLTLWQKALSLEPQN--DDYQ---RGLILTLADA------GQYDEALVKAKQLVSG---APDKAN 118 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHH---HHHHHHHHHC------CCHHHHHHHHHHHHHh---CCCCHH
Confidence 45788899999999999999997666 432 2232 3667788764 5678888888876442 444555
Q ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHh
Q psy5931 82 FYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEA 126 (173)
Q Consensus 82 ~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~ 126 (173)
+...|..+...|+.++|...|..++.++|..+.+|..+|..+..
T Consensus 119 -~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~ 162 (765)
T PRK10049 119 -LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRN 162 (765)
T ss_pred -HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 77889999999999999999999999999999999999987754
No 64
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.49 E-value=0.13 Score=33.96 Aligned_cols=67 Identities=12% Similarity=0.010 Sum_probs=52.3
Q ss_pred HHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCCCchhhhhHH
Q psy5931 88 MLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKESMSRKYLA 167 (173)
Q Consensus 88 ~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~~~k~Rk~la 167 (173)
.++.+.+++++|.+.+..++.++|..+..|..-|..+..+-. -..|+.+|-+++....+...+..+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~-------------~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGR-------------YEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhcc-------------HHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 356788999999999999999999999999999988877742 2457888888887765555444443
No 65
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.31 E-value=0.07 Score=27.77 Aligned_cols=32 Identities=19% Similarity=0.184 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHccchh
Q psy5931 81 EFYALKGMLLAQIGRSAEANKAFSAAVQMHDV 112 (173)
Q Consensus 81 E~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~ 112 (173)
+.+..+|..+..+|++++|-..|..++.++|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 45778999999999999999999999998775
No 66
>KOG2076|consensus
Probab=94.17 E-value=0.51 Score=47.16 Aligned_cols=110 Identities=15% Similarity=0.143 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchh
Q psy5931 33 IVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDV 112 (173)
Q Consensus 33 v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~ 112 (173)
+.-+..++--||--.+- .+++.++.++++..== ..+--.+-|.-=|++++..|+.+.|...+-.|..+.|+
T Consensus 135 l~~~l~~ll~eAN~lfa------rg~~eeA~~i~~EvIk---qdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~ 205 (895)
T KOG2076|consen 135 LAPELRQLLGEANNLFA------RGDLEEAEEILMEVIK---QDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK 205 (895)
T ss_pred cCHHHHHHHHHHHHHHH------hCCHHHHHHHHHHHHH---hCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 33344444444544333 4577788777766544 33444566666799999999999999999999999999
Q ss_pred hHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCCCchhhhhH
Q psy5931 113 MVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKESMSRKYL 166 (173)
Q Consensus 113 ~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~~~k~Rk~l 166 (173)
-..-|..|+++...+- .-.+|..||-.|++. ++.+ ++++
T Consensus 206 d~e~W~~ladls~~~~-------------~i~qA~~cy~rAI~~-~p~n-~~~~ 244 (895)
T KOG2076|consen 206 DYELWKRLADLSEQLG-------------NINQARYCYSRAIQA-NPSN-WELI 244 (895)
T ss_pred ChHHHHHHHHHHHhcc-------------cHHHHHHHHHHHHhc-CCcc-hHHH
Confidence 9999999999977664 345689999999988 4444 4444
No 67
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.11 E-value=0.16 Score=34.26 Aligned_cols=49 Identities=18% Similarity=0.204 Sum_probs=39.5
Q ss_pred HHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccc
Q psy5931 59 LQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMH 110 (173)
Q Consensus 59 l~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~ 110 (173)
++.++++.+.+.= ..++.+..+..-|.++..+|++++|.+.|..|+.+.
T Consensus 28 ~~~al~~~~~~~~---~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 28 YEKALDIEEQLGD---DHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHTTT---HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC---CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 5566666444432 456789999999999999999999999999999874
No 68
>KOG4234|consensus
Probab=94.07 E-value=0.35 Score=41.64 Aligned_cols=94 Identities=18% Similarity=0.190 Sum_probs=76.4
Q ss_pred HHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCC
Q psy5931 58 QLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSA 137 (173)
Q Consensus 58 el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~ 137 (173)
.|+++|+++-+|. .+-++-+|..+|.-+-||+..+.|-..-+.|+++.|+..||-..-+...+++ ++
T Consensus 117 kY~~Ale~cp~~~-----~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~--ek------ 183 (271)
T KOG4234|consen 117 KYQEALESCPSTS-----TEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM--EK------ 183 (271)
T ss_pred HHHHHHHhCcccc-----HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh--hh------
Confidence 4899999998884 4889999999999999999999999999999999999999987666666665 22
Q ss_pred chhhhHHHHHHHHHHHchhC-CCchhhhhHHHH
Q psy5931 138 PNMVLGVFAVTCFMHACRHQ-KESMSRKYLAKV 169 (173)
Q Consensus 138 ~~~~~~~~Ai~CyLqA~~~~-~~~k~Rk~laRi 169 (173)
-..|+.=|=+-...+ ....+|+-|+|+
T Consensus 184 -----~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 184 -----YEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred -----HHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 467888887665443 345678888775
No 69
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=94.02 E-value=1.2 Score=42.58 Aligned_cols=51 Identities=12% Similarity=0.144 Sum_probs=45.1
Q ss_pred hhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhh
Q psy5931 77 EMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQ 127 (173)
Q Consensus 77 ~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~ 127 (173)
|..++.+...|.++.+.|++++|...|..+++++|..+.+|...|..+...
T Consensus 281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~ 331 (656)
T PRK15174 281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQV 331 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 456788889999999999999999999999999999999998888776554
No 70
>KOG4162|consensus
Probab=93.95 E-value=0.54 Score=46.38 Aligned_cols=100 Identities=19% Similarity=0.170 Sum_probs=69.1
Q ss_pred HHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHH--HHHHHHccchhhHHHH
Q psy5931 40 IRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANK--AFSAAVQMHDVMVKAW 117 (173)
Q Consensus 40 lrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~--~F~~Avql~~~~~kaW 117 (173)
.+.-..|+.. +..+.+|.+..-..-- -+|.--...+=.|..+.++|+..-|.+ .-+-|+++||+.+++|
T Consensus 687 ~~~~G~~~~~------~~~~~EA~~af~~Al~---ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW 757 (799)
T KOG4162|consen 687 YYLRGLLLEV------KGQLEEAKEAFLVALA---LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAW 757 (799)
T ss_pred HHHhhHHHHH------HHhhHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHH
Confidence 3444556665 3455666554433211 123333456667999999998888888 8899999999999999
Q ss_pred HHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCCCch
Q psy5931 118 ALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKESM 161 (173)
Q Consensus 118 ~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~~~k 161 (173)
..=|......... .+|..||.-|+.+.....
T Consensus 758 ~~LG~v~k~~Gd~-------------~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 758 YYLGEVFKKLGDS-------------KQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHHHHHHHccch-------------HHHHHHHHHHHhhccCCC
Confidence 8888877666432 369999999998865443
No 71
>PRK12370 invasion protein regulator; Provisional
Probab=93.92 E-value=0.78 Score=42.73 Aligned_cols=59 Identities=17% Similarity=0.191 Sum_probs=45.8
Q ss_pred hHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHH
Q psy5931 57 NQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWA 118 (173)
Q Consensus 57 ~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~ 118 (173)
+++.+|+..++..-- ..+..++.+...|.++...|++|+|...|..|+.++|..+.++.
T Consensus 352 g~~~~A~~~~~~Al~---l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~ 410 (553)
T PRK12370 352 SEYIVGSLLFKQANL---LSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGI 410 (553)
T ss_pred cCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHH
Confidence 346666666655433 24556778889999999999999999999999999999775543
No 72
>KOG4626|consensus
Probab=93.91 E-value=0.17 Score=49.51 Aligned_cols=98 Identities=21% Similarity=0.214 Sum_probs=56.9
Q ss_pred HHHHhhhhccC-ChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHH
Q psy5931 44 VKCYLQMAALD-GKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGD 122 (173)
Q Consensus 44 ~kc~l~~~~~~-~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~ 122 (173)
+.||-.+++-. +++.++.+|..-.-.-. -++...+=|--+|.-+-.-|+.+.|-+.|..|+|++|.+.-+-..-|.
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aie---l~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgn 192 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIE---LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHh---cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhH
Confidence 44554444332 34445555554433222 345555666666666777777777777777777777766555554444
Q ss_pred hHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhC
Q psy5931 123 YMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQ 157 (173)
Q Consensus 123 ~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~ 157 (173)
.+-.+. ..+.|-+|||.|++-+
T Consensus 193 Llka~G-------------rl~ea~~cYlkAi~~q 214 (966)
T KOG4626|consen 193 LLKAEG-------------RLEEAKACYLKAIETQ 214 (966)
T ss_pred HHHhhc-------------ccchhHHHHHHHHhhC
Confidence 443332 3456889999999764
No 73
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=93.89 E-value=0.063 Score=32.68 Aligned_cols=29 Identities=21% Similarity=0.400 Sum_probs=25.9
Q ss_pred CchHHHHHHHHHHccchhhHHHHHHHHHhH
Q psy5931 95 RSAEANKAFSAAVQMHDVMVKAWALWGDYM 124 (173)
Q Consensus 95 ~~deA~~~F~~Avql~~~~~kaW~~WG~~~ 124 (173)
..|.|-..|...|..||. +|.|..|+.|=
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyAkFE 30 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYAKFE 30 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHHHhh
Confidence 358899999999999977 99999999984
No 74
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=93.72 E-value=0.2 Score=33.72 Aligned_cols=67 Identities=16% Similarity=0.114 Sum_probs=46.8
Q ss_pred hhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhh-------HHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHH
Q psy5931 77 EMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVM-------VKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTC 149 (173)
Q Consensus 77 ~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~-------~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~C 149 (173)
+..+..+...|.++..+|++++|...|..|+++.... +..+..=|..+..+. =-..|+..
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g-------------~~~~A~~~ 68 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLG-------------DYEEALEY 68 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTT-------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC-------------CHHHHHHH
Confidence 4567889999999999999999999999999884322 344444444444432 13567777
Q ss_pred HHHHchh
Q psy5931 150 FMHACRH 156 (173)
Q Consensus 150 yLqA~~~ 156 (173)
|-+|...
T Consensus 69 ~~~al~i 75 (78)
T PF13424_consen 69 YQKALDI 75 (78)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 7777654
No 75
>KOG4626|consensus
Probab=93.29 E-value=0.31 Score=47.72 Aligned_cols=68 Identities=22% Similarity=0.286 Sum_probs=60.3
Q ss_pred hhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchh
Q psy5931 77 EMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRH 156 (173)
Q Consensus 77 ~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~ 156 (173)
+|-+|-|..=|.++-.-|+.++|-..|..||.+.|+.+.+|+.-|.-+-+.-. +..|+.||.+|.++
T Consensus 113 ~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~-------------~~~a~~~~~~alql 179 (966)
T KOG4626|consen 113 PQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGD-------------LELAVQCFFEALQL 179 (966)
T ss_pred chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCC-------------CcccHHHHHHHHhc
Confidence 78999999999999999999999999999999999999999988877665543 34599999999998
Q ss_pred C
Q psy5931 157 Q 157 (173)
Q Consensus 157 ~ 157 (173)
.
T Consensus 180 n 180 (966)
T KOG4626|consen 180 N 180 (966)
T ss_pred C
Confidence 3
No 76
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=92.58 E-value=3.8 Score=34.52 Aligned_cols=126 Identities=13% Similarity=0.078 Sum_probs=84.5
Q ss_pred CCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHH
Q psy5931 27 TIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAA 106 (173)
Q Consensus 27 ~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~A 106 (173)
++|+.+..+.|.+-.+ +++ ++++.++.+..+..-=.|-..+....-...-|..+-+.|++++|...|...
T Consensus 26 ~~~~~~~~~~Y~~A~~----~~~------~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~f 95 (243)
T PRK10866 26 EVPDNPPSEIYATAQQ----KLQ------DGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRF 95 (243)
T ss_pred CCCCCCHHHHHHHHHH----HHH------CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3556667776654433 344 356777777777765556556655555667799999999999999999999
Q ss_pred HccchhhHHHHHHHHHhHHhh---------cCC-CCCCCCCchhhhHHHHHHHHHHHchhCCCchhhh
Q psy5931 107 VQMHDVMVKAWALWGDYMEAQ---------FTN-PSPPGSAPNMVLGVFAVTCFMHACRHQKESMSRK 164 (173)
Q Consensus 107 vql~~~~~kaW~~WG~~~d~~---------f~~-~~~~~~~~~~~~~~~Ai~CyLqA~~~~~~~k~Rk 164 (173)
++.+|+.+++ .+..|.-.+ |.. .+.+.+.++...+..|+.-|-+=++-+.+++...
T Consensus 96 i~~~P~~~~~--~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~ 161 (243)
T PRK10866 96 IRLNPTHPNI--DYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTT 161 (243)
T ss_pred HHhCcCCCch--HHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHH
Confidence 9999987755 444444332 111 1223455677788888888888887766665433
No 77
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=92.37 E-value=0.66 Score=38.64 Aligned_cols=113 Identities=12% Similarity=0.131 Sum_probs=73.9
Q ss_pred hHHHHHHHhCCChHHHHHHHHhhcCC-CC-CcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhH
Q psy5931 3 IQFGKIARKHHLTSVCLDSLFRLYTI-PS-VPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTA 80 (173)
Q Consensus 3 ~~fa~iARkh~l~~vc~~~L~ki~~l-p~-i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qka 80 (173)
..+|.+..+.|-++-++..+.+.-.+ |+ .++.. ..+-.+.++. ..+|+.+.|+-..... +..+
T Consensus 150 ~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~------~l~~~li~~~---~~~~~~~~l~~~~~~~------~~~~ 214 (280)
T PF13429_consen 150 LALAEIYEQLGDPDKALRDYRKALELDPDDPDARN------ALAWLLIDMG---DYDEAREALKRLLKAA------PDDP 214 (280)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHH------HHHHHHCTTC---HHHHHHHHHHHHHHH-------HTSC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH------HHHHHHHHCC---ChHHHHHHHHHHHHHC------cCHH
Confidence 45778888888888888888886553 32 22211 2233444432 2344566666666554 3334
Q ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCC
Q psy5931 81 EFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTN 130 (173)
Q Consensus 81 E~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~ 130 (173)
.++.--|..+..+|++++|-..|..++...|+-+.....-|+.+......
T Consensus 215 ~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~ 264 (280)
T PF13429_consen 215 DLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRK 264 (280)
T ss_dssp CHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----
T ss_pred HHHHHHHHHhcccccccccccccccccccccccccccccccccccccccc
Confidence 45566699999999999999999999999999999999999888877543
No 78
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=92.32 E-value=0.68 Score=40.86 Aligned_cols=84 Identities=17% Similarity=0.083 Sum_probs=63.0
Q ss_pred CchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHc
Q psy5931 75 TKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHAC 154 (173)
Q Consensus 75 ~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~ 154 (173)
..++.+|=+-+=|-+..++|+.++|-.+|..|+++.|.-+..|..||.-+...-... .-..|-.-+=||.
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~----------~ta~a~~ll~~al 220 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQ----------MTAKARALLRQAL 220 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCc----------ccHHHHHHHHHHH
Confidence 457788889999999999999999999999999999999999999999887665322 1122333334555
Q ss_pred hhC-CCchhhhhHHH
Q psy5931 155 RHQ-KESMSRKYLAK 168 (173)
Q Consensus 155 ~~~-~~~k~Rk~laR 168 (173)
+.+ .+..++.||+.
T Consensus 221 ~~D~~~iral~lLA~ 235 (287)
T COG4235 221 ALDPANIRALSLLAF 235 (287)
T ss_pred hcCCccHHHHHHHHH
Confidence 544 45566666654
No 79
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=92.17 E-value=0.22 Score=27.54 Aligned_cols=31 Identities=19% Similarity=0.431 Sum_probs=28.3
Q ss_pred CCchHHHHHHHHHHccchhhHHHHHHHHHhH
Q psy5931 94 GRSAEANKAFSAAVQMHDVMVKAWALWGDYM 124 (173)
Q Consensus 94 g~~deA~~~F~~Avql~~~~~kaW~~WG~~~ 124 (173)
|+.+.|-..|..++..+|..+..|..+..|.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e 31 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFE 31 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 5678999999999999999999999998874
No 80
>PLN02789 farnesyltranstransferase
Probab=91.93 E-value=1.6 Score=38.58 Aligned_cols=90 Identities=7% Similarity=0.049 Sum_probs=57.9
Q ss_pred CCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhC-CchHHHHHHHHHHc
Q psy5931 30 SVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIG-RSAEANKAFSAAVQ 108 (173)
Q Consensus 30 ~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg-~~deA~~~F~~Avq 108 (173)
.|--.+.|..+....+..+.. .....++|+..+..-. ..+.-...+..||.++.+|| +.++|-..+..+++
T Consensus 29 ~i~y~~~~~~a~~~~ra~l~~-----~e~serAL~lt~~aI~---lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~ 100 (320)
T PLN02789 29 PIAYTPEFREAMDYFRAVYAS-----DERSPRALDLTADVIR---LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAE 100 (320)
T ss_pred ceeeCHHHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHH---HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHH
Confidence 455556777777776666653 1235566666554433 23444567777888888887 46788888888888
Q ss_pred cchhhHHHHHHHHHhHHhh
Q psy5931 109 MHDVMVKAWALWGDYMEAQ 127 (173)
Q Consensus 109 l~~~~~kaW~~WG~~~d~~ 127 (173)
.+|+...+|..=|-.++++
T Consensus 101 ~npknyqaW~~R~~~l~~l 119 (320)
T PLN02789 101 DNPKNYQIWHHRRWLAEKL 119 (320)
T ss_pred HCCcchHHhHHHHHHHHHc
Confidence 8887777777555444443
No 81
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=91.50 E-value=2.9 Score=37.31 Aligned_cols=124 Identities=13% Similarity=0.040 Sum_probs=89.0
Q ss_pred hHHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHH
Q psy5931 3 IQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEF 82 (173)
Q Consensus 3 ~~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~ 82 (173)
..+|+.....|-++.+...|.+....|.=+ --.- -|-+.. .++..+++..++..-= ..|..+++
T Consensus 267 ~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~---~l~~------l~~~l~----~~~~~~al~~~e~~lk---~~P~~~~l 330 (398)
T PRK10747 267 VAMAEHLIECDDHDTAQQIILDGLKRQYDE---RLVL------LIPRLK----TNNPEQLEKVLRQQIK---QHGDTPLL 330 (398)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCH---HHHH------HHhhcc----CCChHHHHHHHHHHHh---hCCCCHHH
Confidence 356778888888888888888876644211 1111 111111 1345566777776554 44677899
Q ss_pred HHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchh
Q psy5931 83 YALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRH 156 (173)
Q Consensus 83 ~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~ 156 (173)
+..-|-+.-+.|+.++|-..|..++...|+. ..+...+..+++.... ..|..||-+|..+
T Consensus 331 ~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~-------------~~A~~~~~~~l~~ 390 (398)
T PRK10747 331 WSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKP-------------EEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCH-------------HHHHHHHHHHHhh
Confidence 9999999999999999999999999999984 5577788888887532 3478899998764
No 82
>KOG0890|consensus
Probab=91.39 E-value=2 Score=47.04 Aligned_cols=160 Identities=14% Similarity=0.068 Sum_probs=100.5
Q ss_pred hHHHHHHHhCCChHHHHHHHHhh--cCCCCCcHHHHHHHHHHHHHHHhhhhccC-ChhHHHHHHHHhhhcccc---CCCc
Q psy5931 3 IQFGKIARKHHLTSVCLDSLFRL--YTIPSVPIVDCFEKIRQQVKCYLQMAALD-GKNQLQEGLEVIEHTNLK---YLTK 76 (173)
Q Consensus 3 ~~fa~iARkh~l~~vc~~~L~ki--~~lp~i~v~daF~KlrEq~kc~l~~~~~~-~~~el~~gL~vi~~tnl~---~F~~ 76 (173)
.+.|++||+.|-.+-|.+.|-+- +.+|.+. -|.||-..+...+. .-.+|+++++.--.-+.. .-..
T Consensus 1674 LqsAriaR~aG~~q~A~nall~A~e~r~~~i~--------~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~ 1745 (2382)
T KOG0890|consen 1674 LQSARIARLAGHLQRAQNALLNAKESRLPEIV--------LERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQ 1745 (2382)
T ss_pred HHHHHHHHhcccHHHHHHHHHhhhhcccchHH--------HHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccch
Confidence 57899999999999999888663 3355443 36677777631100 112344444332221111 1113
Q ss_pred hhhHHHHH----HHHHHHHHhCCc--hHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCC---chhhhHHHHH
Q psy5931 77 EMTAEFYA----LKGMLLAQIGRS--AEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSA---PNMVLGVFAV 147 (173)
Q Consensus 77 ~qkaE~~~----LKG~fl~~Lg~~--deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~---~~~~~~~~Ai 147 (173)
.++..+|. +=|.++...|+. ++=-+.|-.|++++|..-+.-..=|.|.|++....+..-.+ .-+.+.. |+
T Consensus 1746 ~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~-~~ 1824 (2382)
T KOG0890|consen 1746 SVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLK-AI 1824 (2382)
T ss_pred hhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHH-HH
Confidence 45555555 334566677774 55668899999999977777777788988887655432222 3456666 77
Q ss_pred HHHHHHchhCCCchhhhhHHHH--hhc
Q psy5931 148 TCFMHACRHQKESMSRKYLAKV--DYI 172 (173)
Q Consensus 148 ~CyLqA~~~~~~~k~Rk~laRi--LWL 172 (173)
.=|..|... ++..-+.-++|+ |||
T Consensus 1825 ~~~~~sl~y-g~~~iyqsmPRllTLWL 1850 (2382)
T KOG0890|consen 1825 YFFGRALYY-GNQHLYQSMPRLLTLWL 1850 (2382)
T ss_pred HHHHHHHHh-cchhHHHhhhHHHHHHH
Confidence 666777665 788888899999 564
No 83
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=91.33 E-value=2.6 Score=34.13 Aligned_cols=112 Identities=15% Similarity=0.079 Sum_probs=74.7
Q ss_pred HHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhH---HHHH
Q psy5931 42 QQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMV---KAWA 118 (173)
Q Consensus 42 Eq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~---kaW~ 118 (173)
++++.+++ .+++.++.+..+...-.|-..+.-.+-...-|.-+-+.|++++|...|..-+..+|+.+ .++.
T Consensus 10 ~~a~~~~~------~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 10 QKALEALQ------QGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp HHHHHHHH------CT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred HHHHHHHH------CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 45666676 46799999999988888888888888888889999999999999999999999999866 3555
Q ss_pred HHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCCCch
Q psy5931 119 LWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKESM 161 (173)
Q Consensus 119 ~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~~~k 161 (173)
..|.-...+..... .+.++.....+|+.-|-.-++.+.++.
T Consensus 84 ~~g~~~~~~~~~~~--~~~~D~~~~~~A~~~~~~li~~yP~S~ 124 (203)
T PF13525_consen 84 MLGLSYYKQIPGIL--RSDRDQTSTRKAIEEFEELIKRYPNSE 124 (203)
T ss_dssp HHHHHHHHHHHHHH---TT---HHHHHHHHHHHHHHHH-TTST
T ss_pred HHHHHHHHhCccch--hcccChHHHHHHHHHHHHHHHHCcCch
Confidence 55543333321110 001455677888888877777665554
No 84
>PLN02789 farnesyltranstransferase
Probab=91.29 E-value=6 Score=34.92 Aligned_cols=129 Identities=9% Similarity=0.057 Sum_probs=84.5
Q ss_pred hHHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHH
Q psy5931 3 IQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEF 82 (173)
Q Consensus 3 ~~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~ 82 (173)
..|-.+-.+.+..+-++...+++-.+. -.--.+.. ....|+..+ ...+.+.|+.++..-.. .+.....
T Consensus 41 ~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~---~R~~iL~~L-----~~~l~eeL~~~~~~i~~---npknyqa 108 (320)
T PLN02789 41 DYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWH---FRRLCLEAL-----DADLEEELDFAEDVAED---NPKNYQI 108 (320)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHH---HHHHHHHHc-----chhHHHHHHHHHHHHHH---CCcchHH
Confidence 345555666778888888888765431 11122222 123344433 23467777777665442 3344456
Q ss_pred HHHHHHHHHHhCCc--hHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchh
Q psy5931 83 YALKGMLLAQIGRS--AEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRH 156 (173)
Q Consensus 83 ~~LKG~fl~~Lg~~--deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~ 156 (173)
+..||.++.++|+. +++...+..++.++|....+|..=|-.+.++- --..|+.+|-++++.
T Consensus 109 W~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~-------------~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 109 WHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLG-------------GWEDELEYCHQLLEE 171 (320)
T ss_pred hHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhh-------------hHHHHHHHHHHHHHH
Confidence 99999999999974 67788888999999999999988777776652 134688888888875
No 85
>KOG1126|consensus
Probab=91.08 E-value=0.76 Score=44.52 Aligned_cols=69 Identities=20% Similarity=0.142 Sum_probs=57.8
Q ss_pred chhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHch
Q psy5931 76 KEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACR 155 (173)
Q Consensus 76 ~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~ 155 (173)
++.+.|=|.-=|.+.+=-+++|.|-+.|..|||++|.++-+...||+=.-.. + --..|+.||--|++
T Consensus 417 ~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~--e-----------e~d~a~~~fr~Al~ 483 (638)
T KOG1126|consen 417 DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIAT--E-----------EFDKAMKSFRKALG 483 (638)
T ss_pred CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhh--H-----------HHHhHHHHHHhhhc
Confidence 4667888999999999999999999999999999999999999999732211 1 24569999999998
Q ss_pred hC
Q psy5931 156 HQ 157 (173)
Q Consensus 156 ~~ 157 (173)
++
T Consensus 484 ~~ 485 (638)
T KOG1126|consen 484 VD 485 (638)
T ss_pred CC
Confidence 74
No 86
>KOG1156|consensus
Probab=90.84 E-value=0.93 Score=44.15 Aligned_cols=97 Identities=23% Similarity=0.356 Sum_probs=74.2
Q ss_pred HHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHH
Q psy5931 41 RQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALW 120 (173)
Q Consensus 41 rEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~W 120 (173)
|+-+|||-+ ++|..||-.|...-= ..+.-.|=+++||+.|..||+.+||...-.-++..|+..+=-|--.
T Consensus 12 ~~~lk~yE~-------kQYkkgLK~~~~iL~---k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~ 81 (700)
T KOG1156|consen 12 RRALKCYET-------KQYKKGLKLIKQILK---KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVL 81 (700)
T ss_pred HHHHHHHHH-------HHHHhHHHHHHHHHH---hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHH
Confidence 556899985 689999999987654 4455678899999999999999999999999999888777667555
Q ss_pred HHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCCCc
Q psy5931 121 GDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKES 160 (173)
Q Consensus 121 G~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~~~ 160 (173)
|-+.- .+ + ==.+||-||--|.+.+++.
T Consensus 82 gl~~R----~d------K---~Y~eaiKcy~nAl~~~~dN 108 (700)
T KOG1156|consen 82 GLLQR----SD------K---KYDEAIKCYRNALKIEKDN 108 (700)
T ss_pred HHHHh----hh------h---hHHHHHHHHHHHHhcCCCc
Confidence 54421 11 1 1257999999998876543
No 87
>KOG0548|consensus
Probab=90.49 E-value=1.6 Score=41.62 Aligned_cols=68 Identities=18% Similarity=0.191 Sum_probs=56.6
Q ss_pred hhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchh
Q psy5931 77 EMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRH 156 (173)
Q Consensus 77 ~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~ 156 (173)
|.-+.+|..||.-+-+||.+.+|.+-=.++++++|+..|+|.--|.-+..|=. =..|+.||-.|..+
T Consensus 389 P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~-------------ydkAleay~eale~ 455 (539)
T KOG0548|consen 389 PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKE-------------YDKALEAYQEALEL 455 (539)
T ss_pred CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHhc
Confidence 77788999999999999999999999999999999999999988877766621 13588899888887
Q ss_pred C
Q psy5931 157 Q 157 (173)
Q Consensus 157 ~ 157 (173)
+
T Consensus 456 d 456 (539)
T KOG0548|consen 456 D 456 (539)
T ss_pred C
Confidence 4
No 88
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.27 E-value=2.1 Score=37.17 Aligned_cols=115 Identities=14% Similarity=0.107 Sum_probs=77.0
Q ss_pred HHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHH
Q psy5931 42 QQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWG 121 (173)
Q Consensus 42 Eq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG 121 (173)
+-+.-|++- .++..+..-+++.-- .++.-.--+..++.+..++|+.|-|.+.|.+|++++|+-+..--..|
T Consensus 40 qLal~YL~~------gd~~~A~~nlekAL~---~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG 110 (250)
T COG3063 40 QLALGYLQQ------GDYAQAKKNLEKALE---HDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYG 110 (250)
T ss_pred HHHHHHHHC------CCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhh
Confidence 344556652 334444444444333 46777778899999999999999999999999999999999988899
Q ss_pred HhHHhhc---------C---CCCCCCCCchhhhHHHHHHHHHHHchhCCCchhhhhHHHHh
Q psy5931 122 DYMEAQF---------T---NPSPPGSAPNMVLGVFAVTCFMHACRHQKESMSRKYLAKVD 170 (173)
Q Consensus 122 ~~~d~~f---------~---~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~~~k~Rk~laRiL 170 (173)
-|+-..- . .+|.-. ...-.-+|+..|-+++=. ...++.++-|-|
T Consensus 111 ~FLC~qg~~~eA~q~F~~Al~~P~Y~--~~s~t~eN~G~Cal~~gq---~~~A~~~l~raL 166 (250)
T COG3063 111 AFLCAQGRPEEAMQQFERALADPAYG--EPSDTLENLGLCALKAGQ---FDQAEEYLKRAL 166 (250)
T ss_pred HHHHhCCChHHHHHHHHHHHhCCCCC--CcchhhhhhHHHHhhcCC---chhHHHHHHHHH
Confidence 8886653 1 111000 111234677888887643 345666766655
No 89
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.23 E-value=0.41 Score=26.79 Aligned_cols=30 Identities=13% Similarity=0.021 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhCCchHHHHHHHHHHccchh
Q psy5931 83 YALKGMLLAQIGRSAEANKAFSAAVQMHDV 112 (173)
Q Consensus 83 ~~LKG~fl~~Lg~~deA~~~F~~Avql~~~ 112 (173)
+...|..+.++|++++|.+.|...+.-+|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 456799999999999999999999998886
No 90
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=88.63 E-value=1 Score=42.58 Aligned_cols=52 Identities=23% Similarity=0.307 Sum_probs=46.2
Q ss_pred hHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccch
Q psy5931 57 NQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHD 111 (173)
Q Consensus 57 ~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~ 111 (173)
+++.+||+.||..=- .+|-..|+|.+||-++-..|+.++|......|-++|.
T Consensus 208 g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~ 259 (517)
T PF12569_consen 208 GDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL 259 (517)
T ss_pred CCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh
Confidence 458899999996554 3566789999999999999999999999999999998
No 91
>PRK11906 transcriptional regulator; Provisional
Probab=88.45 E-value=10 Score=35.58 Aligned_cols=102 Identities=12% Similarity=0.115 Sum_probs=72.4
Q ss_pred HHHHhhhhccC---ChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHH
Q psy5931 44 VKCYLQMAALD---GKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALW 120 (173)
Q Consensus 44 ~kc~l~~~~~~---~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~W 120 (173)
+-||.+..-++ .+.+..+|++...-.-- -++--+--..+-|..+.-.|+.+.|.-.|..|+.+.|+.+-+|..=
T Consensus 302 A~~h~~~~~~g~~~~~~~~~~a~~~A~rAve---ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~ 378 (458)
T PRK11906 302 AECHMSLALHGKSELELAAQKALELLDYVSD---ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYR 378 (458)
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHH
Confidence 34777653222 35668888887654322 1333455678889999999999999999999999999999999876
Q ss_pred HHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCCCchh
Q psy5931 121 GDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKESMS 162 (173)
Q Consensus 121 G~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~~~k~ 162 (173)
|-++-.- ++ .+.|+.+.-+|.++ ++.+.
T Consensus 379 ~~~~~~~--G~-----------~~~a~~~i~~alrL-sP~~~ 406 (458)
T PRK11906 379 ALVHFHN--EK-----------IEEARICIDKSLQL-EPRRR 406 (458)
T ss_pred HHHHHHc--CC-----------HHHHHHHHHHHhcc-Cchhh
Confidence 6654332 22 46688888888888 45443
No 92
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=88.34 E-value=2.6 Score=41.15 Aligned_cols=50 Identities=22% Similarity=0.098 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhh
Q psy5931 78 MTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQ 127 (173)
Q Consensus 78 qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~ 127 (173)
+-++.+++=|-+...+|++|||...+.++++++|....++..-+..|-++
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~ 133 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQ 133 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh
Confidence 34899999999999999999999999999999999999999999888765
No 93
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=87.54 E-value=1.9 Score=33.17 Aligned_cols=76 Identities=17% Similarity=0.223 Sum_probs=60.7
Q ss_pred HHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCc-hH----------HHHHHHHHHccchh
Q psy5931 44 VKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRS-AE----------ANKAFSAAVQMHDV 112 (173)
Q Consensus 44 ~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~-de----------A~~~F~~Avql~~~ 112 (173)
++-+++ +.....+|++|+.+-.++=....-..++++-|.+..+++.. |+ |-+.|+.++.++|.
T Consensus 3 A~~~~~------rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~ 76 (111)
T PF04781_consen 3 AKDYFA------RGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPD 76 (111)
T ss_pred HHHHHH------ccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChh
Confidence 455555 45688999999999998887777779999999999888753 32 88999999999999
Q ss_pred hHHHHHHHHHhHH
Q psy5931 113 MVKAWALWGDYME 125 (173)
Q Consensus 113 ~~kaW~~WG~~~d 125 (173)
.+..-.+=|+-+.
T Consensus 77 ~A~~L~~la~~l~ 89 (111)
T PF04781_consen 77 SAHSLFELASQLG 89 (111)
T ss_pred HHHHHHHHHHHhh
Confidence 9777766665543
No 94
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=87.12 E-value=15 Score=30.93 Aligned_cols=52 Identities=15% Similarity=0.056 Sum_probs=43.6
Q ss_pred chhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhh
Q psy5931 76 KEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQ 127 (173)
Q Consensus 76 ~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~ 127 (173)
.+.......+.|.++...|++++|...|..++++.|..+.++...|+.+...
T Consensus 110 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 110 NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence 3445667778999999999999999999999999999887777777776654
No 95
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=87.03 E-value=2.8 Score=28.69 Aligned_cols=48 Identities=10% Similarity=0.050 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhh
Q psy5931 79 TAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQ 127 (173)
Q Consensus 79 kaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~ 127 (173)
.++.+...|..+.+.|++++|...+.. ...++..+......|.-+..+
T Consensus 24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l 71 (84)
T PF12895_consen 24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKL 71 (84)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHh
Confidence 667777799999999999999999999 888887766666667665555
No 96
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=86.33 E-value=6.4 Score=29.74 Aligned_cols=93 Identities=19% Similarity=0.074 Sum_probs=56.1
Q ss_pred HHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHH
Q psy5931 42 QQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWG 121 (173)
Q Consensus 42 Eq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG 121 (173)
..+++++.. +++.++.+.++..--+.=.++-+....---|.++...|++|+|.+.+.. +.-.+-.+.+|..=|
T Consensus 53 ~lA~~~~~~------g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~G 125 (145)
T PF09976_consen 53 QLAKAAYEQ------GDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLG 125 (145)
T ss_pred HHHHHHHHC------CCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHH
Confidence 357777763 5666777666665544423333443333358888899999999999865 332333445555556
Q ss_pred HhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHc
Q psy5931 122 DYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHAC 154 (173)
Q Consensus 122 ~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~ 154 (173)
+.+-..-. -..|+.+|-+|+
T Consensus 126 di~~~~g~-------------~~~A~~~y~~Al 145 (145)
T PF09976_consen 126 DIYLAQGD-------------YDEARAAYQKAL 145 (145)
T ss_pred HHHHHCCC-------------HHHHHHHHHHhC
Confidence 55555432 245888887763
No 97
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=86.32 E-value=1.3 Score=36.82 Aligned_cols=61 Identities=15% Similarity=0.049 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCCC
Q psy5931 97 AEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKE 159 (173)
Q Consensus 97 deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~~ 159 (173)
+||-.-|..|+.++|+...+-..||.-+-.+-.-.| .......+-..|..||-+|...+.+
T Consensus 52 edAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~--d~~~A~~~F~kA~~~FqkAv~~~P~ 112 (186)
T PF06552_consen 52 EDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTP--DTAEAEEYFEKATEYFQKAVDEDPN 112 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcC--ChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 789999999999999999999999998777654333 1223456778899999999987543
No 98
>KOG0543|consensus
Probab=86.06 E-value=4.6 Score=37.24 Aligned_cols=90 Identities=14% Similarity=0.168 Sum_probs=62.6
Q ss_pred CChHHHHHHHHhhcCCCCCcHHHHHHHHHHH-----HHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHH
Q psy5931 13 HLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQ-----VKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKG 87 (173)
Q Consensus 13 ~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq-----~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG 87 (173)
..|+-|+..|..-.+.| .+=+..+..+|-. +.||+.+ +++.+++.-+|.+-- .++-...=++=||
T Consensus 229 ~~Yerav~~l~~~~~~~-~ee~~~~~~~k~~~~lNlA~c~lKl------~~~~~Ai~~c~kvLe---~~~~N~KALyRrG 298 (397)
T KOG0543|consen 229 KRYERAVSFLEYRRSFD-EEEQKKAEALKLACHLNLAACYLKL------KEYKEAIESCNKVLE---LDPNNVKALYRRG 298 (397)
T ss_pred HHHHHHHHHhhccccCC-HHHHHHHHHHHHHHhhHHHHHHHhh------hhHHHHHHHHHHHHh---cCCCchhHHHHHH
Confidence 34677778888776665 3555555555532 3455554 567777777766554 3333334444599
Q ss_pred HHHHHhCCchHHHHHHHHHHccchh
Q psy5931 88 MLLAQIGRSAEANKAFSAAVQMHDV 112 (173)
Q Consensus 88 ~fl~~Lg~~deA~~~F~~Avql~~~ 112 (173)
..+..+|++|+|-..|..|++++|.
T Consensus 299 ~A~l~~~e~~~A~~df~ka~k~~P~ 323 (397)
T KOG0543|consen 299 QALLALGEYDLARDDFQKALKLEPS 323 (397)
T ss_pred HHHHhhccHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999995
No 99
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=84.97 E-value=11 Score=28.77 Aligned_cols=38 Identities=16% Similarity=0.071 Sum_probs=34.1
Q ss_pred CchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchh
Q psy5931 75 TKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDV 112 (173)
Q Consensus 75 ~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~ 112 (173)
+.++..+.+---|.-+..+|++|+|...+..++.-+|.
T Consensus 33 ~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~ 70 (120)
T PF12688_consen 33 SGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD 70 (120)
T ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 67788888888999999999999999999999988776
No 100
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=84.56 E-value=1.6 Score=36.35 Aligned_cols=63 Identities=16% Similarity=0.106 Sum_probs=48.2
Q ss_pred CchHHHHHHHHHHccchhhHHHHHHHHHhHHhh--cCCCCCCCCCchhhhHHHHHHHHHHHchhCCCchhh
Q psy5931 95 RSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQ--FTNPSPPGSAPNMVLGVFAVTCFMHACRHQKESMSR 163 (173)
Q Consensus 95 ~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~--f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~~~k~R 163 (173)
-+|.|-+.++++...+|.-+.++..||--+..+ |...+ ....+-+.|++=|-+|+++ ++.+.+
T Consensus 6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~-----es~~miedAisK~eeAL~I-~P~~hd 70 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGP-----ESKKMIEDAISKFEEALKI-NPNKHD 70 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HH-----HHHHHHHHHHHHHHHHHHH--TT-HH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcc-----hHHHHHHHHHHHHHHHHhc-CCchHH
Confidence 358899999999999999999999999999988 54432 3346788999999999998 565544
No 101
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=84.48 E-value=1.2 Score=26.46 Aligned_cols=29 Identities=17% Similarity=0.170 Sum_probs=23.3
Q ss_pred HHHHHHHHHhCCchHHHHHHHHHHccchh
Q psy5931 84 ALKGMLLAQIGRSAEANKAFSAAVQMHDV 112 (173)
Q Consensus 84 ~LKG~fl~~Lg~~deA~~~F~~Avql~~~ 112 (173)
..-|.++.++|++++|-..|..|+.+...
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 34588999999999999999998766543
No 102
>KOG1125|consensus
Probab=84.24 E-value=3.8 Score=39.42 Aligned_cols=109 Identities=20% Similarity=0.127 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHH-HHhhhhccCChhHHHHHHHHhhhccccC------C-----CchhhHHHHHHHHHHHHHhCCchHHHH
Q psy5931 34 VDCFEKIRQQVK-CYLQMAALDGKNQLQEGLEVIEHTNLKY------L-----TKEMTAEFYALKGMLLAQIGRSAEANK 101 (173)
Q Consensus 34 ~daF~KlrEq~k-c~l~~~~~~~~~el~~gL~vi~~tnl~~------F-----~~~qkaE~~~LKG~fl~~Lg~~deA~~ 101 (173)
.+-|.+|.|+-. .-++.++. ..-+++.||-||=+++=+| | -+|.-.-++.==|--|+.-.+++||-.
T Consensus 407 ~~~l~~i~~~fLeaa~~~~~~-~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIs 485 (579)
T KOG1125|consen 407 SSHLAHIQELFLEAARQLPTK-IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAIS 485 (579)
T ss_pred HHHHHHHHHHHHHHHHhCCCC-CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHH
Confidence 345555655433 33334332 2356899999987765332 1 135556666666777777779999999
Q ss_pred HHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchh
Q psy5931 102 AFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRH 156 (173)
Q Consensus 102 ~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~ 156 (173)
+|-.|+|+.|+++++|+.=|-=|=++. .=+.|+.=||.|+..
T Consensus 486 AY~rALqLqP~yVR~RyNlgIS~mNlG-------------~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 486 AYNRALQLQPGYVRVRYNLGISCMNLG-------------AYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHhcCCCeeeeehhhhhhhhhhh-------------hHHHHHHHHHHHHHh
Confidence 999999999999999987665554432 234567777777654
No 103
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=83.62 E-value=2.9 Score=35.89 Aligned_cols=95 Identities=8% Similarity=0.057 Sum_probs=72.6
Q ss_pred hCCChHHHHHHHHhhcC-CCCCc-HHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHH
Q psy5931 11 KHHLTSVCLDSLFRLYT-IPSVP-IVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGM 88 (173)
Q Consensus 11 kh~l~~vc~~~L~ki~~-lp~i~-v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~ 88 (173)
+.|=++-++..+.++.. .|+-+ ..++.. ..+.+|+. .+++.++++.....--.|-..+-..+.+..-|.
T Consensus 155 ~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y---~LG~~y~~------~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 155 DKSRQDDAIVAFQNFVKKYPDSTYQPNANY---WLGQLNYN------KGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred hcCCHHHHHHHHHHHHHHCcCCcchHHHHH---HHHHHHHH------cCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 34666777777776544 56543 234443 45778887 467889998888776667777788889988999
Q ss_pred HHHHhCCchHHHHHHHHHHccchhhH
Q psy5931 89 LLAQIGRSAEANKAFSAAVQMHDVMV 114 (173)
Q Consensus 89 fl~~Lg~~deA~~~F~~Avql~~~~~ 114 (173)
++..+|+.++|-+.|...+..+|+..
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 99999999999999999999998754
No 104
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=83.26 E-value=16 Score=30.90 Aligned_cols=98 Identities=6% Similarity=0.008 Sum_probs=65.0
Q ss_pred HHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCC-CchhhHHH
Q psy5931 4 QFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYL-TKEMTAEF 82 (173)
Q Consensus 4 ~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F-~~~qkaE~ 82 (173)
..|.+-..+|-++-+...+.+...+. -+-..+ ...-+.+|++. +++.++.+.++..-=..- .+......
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~---~~~la~i~~~~------g~~~eA~~~l~~~l~~~~~~~~~~~~~ 188 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELN-PDDAWA---VHAVAHVLEMQ------GRFKEGIAFMESWRDTWDCSSMLRGHN 188 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHH---HHHHHHHHHHc------CCHHHHHHHHHhhhhccCCCcchhHHH
Confidence 35566777888888888888876642 111112 22336667763 567777777665422111 23444566
Q ss_pred HHHHHHHHHHhCCchHHHHHHHHHHccch
Q psy5931 83 YALKGMLLAQIGRSAEANKAFSAAVQMHD 111 (173)
Q Consensus 83 ~~LKG~fl~~Lg~~deA~~~F~~Avql~~ 111 (173)
+...|.++...|+.|+|...|..++...|
T Consensus 189 ~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 189 WWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 77899999999999999999999986655
No 105
>KOG3824|consensus
Probab=82.90 E-value=2.5 Score=38.64 Aligned_cols=67 Identities=21% Similarity=0.227 Sum_probs=53.5
Q ss_pred hhHHHHHHHHHHHH-HhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchh
Q psy5931 78 MTAEFYALKGMLLA-QIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRH 156 (173)
Q Consensus 78 qkaE~~~LKG~fl~-~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~ 156 (173)
-|.-+.+||..--+ +-|+.|.|-+.|.+|+.|.|+.|.+-.+.|.|.+.- .+ -++|=-||.+|...
T Consensus 113 ~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~--~~-----------iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 113 VKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMH--NE-----------IVEADQCYVKALTI 179 (472)
T ss_pred hHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhh--hh-----------hHhhhhhhheeeee
Confidence 34556777766544 457889999999999999999999999999998875 11 46677899999876
Q ss_pred C
Q psy5931 157 Q 157 (173)
Q Consensus 157 ~ 157 (173)
.
T Consensus 180 s 180 (472)
T KOG3824|consen 180 S 180 (472)
T ss_pred C
Confidence 3
No 106
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=82.79 E-value=3.4 Score=35.35 Aligned_cols=100 Identities=19% Similarity=0.205 Sum_probs=65.9
Q ss_pred hHHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHH
Q psy5931 3 IQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEF 82 (173)
Q Consensus 3 ~~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~ 82 (173)
+.+|..|-+||++-. +..++ ++|++=+.+.+.---.+.+. ....++.-+..-.++.++-++ .++-+|.+
T Consensus 103 L~ia~yAI~~~l~~P--d~f~R--~~~t~vaeev~~~A~~~~~a----g~~~e~~~~~~~~~l~~~~dm---pd~vrAKl 171 (230)
T PHA02537 103 LEIAEYALEHGLTMP--DQFRR--TLANFVAEEVANAALKAASA----GESVEPYFLRVFLDLTTEWDM---PDEVRAKL 171 (230)
T ss_pred HHHHHHHHHcCCCCC--ccccC--CchHHHHHHHHHHHHHHHHc----CCCCChHHHHHHHHHHhcCCC---ChHHHHHH
Confidence 567888888887654 34444 66666444444333222222 111233334454555555555 88999999
Q ss_pred HHHHHHHH---------HHhCCchHHHHHHHHHHccchhh
Q psy5931 83 YALKGMLL---------AQIGRSAEANKAFSAAVQMHDVM 113 (173)
Q Consensus 83 ~~LKG~fl---------~~Lg~~deA~~~F~~Avql~~~~ 113 (173)
|..-|..+ ...++...|...+..|.+++|+.
T Consensus 172 ~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 172 YKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 99999998 45677789999999999999974
No 107
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=82.07 E-value=3.7 Score=38.63 Aligned_cols=66 Identities=17% Similarity=0.228 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCCC
Q psy5931 80 AEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKE 159 (173)
Q Consensus 80 aE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~~ 159 (173)
++.+.-.|..+...|+.++|...|.+|+.+.|+ .-+|..=|++++.... ...|+..|-+|.++...
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~-------------~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGD-------------NRLAADAYSTAFNLRPG 485 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHhcCCC
Confidence 577888899998999999999999999999995 6788888888776542 45699999999988543
No 108
>KOG2076|consensus
Probab=81.50 E-value=23 Score=35.94 Aligned_cols=125 Identities=12% Similarity=0.012 Sum_probs=83.5
Q ss_pred HHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHH
Q psy5931 8 IARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKG 87 (173)
Q Consensus 8 iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG 87 (173)
+.--+|=.+.|..+|..|-..- --...||.-| +.||-|.. +.+..|+ ..+-.-+..|... |+|-.=|
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL---~~IyEqrG------d~eK~l~--~~llAAHL~p~d~-e~W~~la 214 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQD-PRNPIAYYTL---GEIYEQRG------DIEKALN--FWLLAAHLNPKDY-ELWKRLA 214 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHH---HHHHHHcc------cHHHHHH--HHHHHHhcCCCCh-HHHHHHH
Confidence 3333488888999998876541 1233455443 55666642 2222221 0111234456666 9999999
Q ss_pred HHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCC
Q psy5931 88 MLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQK 158 (173)
Q Consensus 88 ~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~ 158 (173)
....++|..+.|--.|+.|+|+.|...+--..-...++++... .-|+.||+|...+.+
T Consensus 215 dls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~-------------~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 215 DLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDL-------------KRAMETFLQLLQLDP 272 (895)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChH-------------HHHHHHHHHHHhhCC
Confidence 9999999999999999999999998766555556666665432 348999999988754
No 109
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=81.44 E-value=6.2 Score=34.42 Aligned_cols=49 Identities=22% Similarity=0.272 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcC
Q psy5931 81 EFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFT 129 (173)
Q Consensus 81 E~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~ 129 (173)
++..--|.-+.+.|++.+|...|..|+.+.|+-+++|.-=|.-||++-.
T Consensus 101 ~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 101 ELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccC
Confidence 4444478899999999999999999999999999999999999999864
No 110
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=80.88 E-value=2.4 Score=39.88 Aligned_cols=48 Identities=19% Similarity=0.138 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCC
Q psy5931 79 TAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNP 131 (173)
Q Consensus 79 kaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~ 131 (173)
.++-|.+.|.++...|++++|...|..|++++|..+. |.- |+++.+..
T Consensus 452 s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt-~~~----~~~~~f~~ 499 (517)
T PRK10153 452 SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT-LYW----IENLVFQT 499 (517)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch-HHH----HHhccccc
Confidence 4788999999999999999999999999999999885 643 45555444
No 111
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=80.82 E-value=6.1 Score=32.95 Aligned_cols=54 Identities=24% Similarity=0.268 Sum_probs=41.5
Q ss_pred HHHHHHHhhhccc-cCC--CchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchh
Q psy5931 59 LQEGLEVIEHTNL-KYL--TKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDV 112 (173)
Q Consensus 59 l~~gL~vi~~tnl-~~F--~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~ 112 (173)
++.+|+..+.+=. +.| ......-+..|-|.+.-++|+.|||-+.|+..++.-..
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 7777776655433 233 23455679999999999999999999999999987654
No 112
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=79.93 E-value=36 Score=28.86 Aligned_cols=102 Identities=17% Similarity=0.183 Sum_probs=73.5
Q ss_pred HHHHHHHhCC-ChHHHHHHHHhhcCC----CC-----CcHHHH-HHHHHHHHHHHhhhhccCChhHHHHHHHHhhhcccc
Q psy5931 4 QFGKIARKHH-LTSVCLDSLFRLYTI----PS-----VPIVDC-FEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLK 72 (173)
Q Consensus 4 ~fa~iARkh~-l~~vc~~~L~ki~~l----p~-----i~v~da-F~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~ 72 (173)
.+|.-..+.+ -++.+..-|++-|.+ +. .+..+- +.=+|..|+||++..+ +.-...++++++-.+=+
T Consensus 40 n~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~---~~~~~ka~~~l~~l~~e 116 (278)
T PF08631_consen 40 NIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDT---YESVEKALNALRLLESE 116 (278)
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCC---hHHHHHHHHHHHHHHHh
Confidence 4667777777 888888888887766 32 334443 3446788999998643 33366677777666554
Q ss_pred CCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccch
Q psy5931 73 YLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHD 111 (173)
Q Consensus 73 ~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~ 111 (173)
|- .+.++|.||=.++.+.++.++++......|.--+
T Consensus 117 ~~---~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 117 YG---NKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred CC---CCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 43 4778898998899999999999999999987654
No 113
>KOG4642|consensus
Probab=79.72 E-value=7.6 Score=34.18 Aligned_cols=76 Identities=14% Similarity=0.240 Sum_probs=59.1
Q ss_pred CcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHH------HhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHH
Q psy5931 31 VPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLE------VIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFS 104 (173)
Q Consensus 31 i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~------vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~ 104 (173)
-++++-|..+.||.+||+- +..|..+.+ .||-|+..|| +.+++-+-++.+.+-+...=.
T Consensus 4 ~~~s~~a~qlkE~gnk~f~------~k~y~~ai~~y~raI~~nP~~~~Y~---------tnralchlk~~~~~~v~~dcr 68 (284)
T KOG4642|consen 4 PEMSESAEQLKEQGNKCFI------PKRYDDAIDCYSRAICINPTVASYY---------TNRALCHLKLKHWEPVEEDCR 68 (284)
T ss_pred cccchHHHHHHhccccccc------hhhhchHHHHHHHHHhcCCCcchhh---------hhHHHHHHHhhhhhhhhhhHH
Confidence 3567889999999999886 344444444 3566666665 678888999999999999999
Q ss_pred HHHccchhhHHHHHHHH
Q psy5931 105 AAVQMHDVMVKAWALWG 121 (173)
Q Consensus 105 ~Avql~~~~~kaW~~WG 121 (173)
.|+|++|+++|+=+-=|
T Consensus 69 ralql~~N~vk~h~flg 85 (284)
T KOG4642|consen 69 RALQLDPNLVKAHYFLG 85 (284)
T ss_pred HHHhcChHHHHHHHHHH
Confidence 99999999998765333
No 114
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=79.22 E-value=5.2 Score=37.83 Aligned_cols=74 Identities=14% Similarity=0.061 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCC---
Q psy5931 82 FYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQK--- 158 (173)
Q Consensus 82 ~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~--- 158 (173)
.+.+-+..+..+|++++|.+....|+...||++.....-|+.+-+... ...|..++-.|-.++.
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~-------------~~~Aa~~~~~Ar~LD~~DR 262 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGD-------------LKEAAEAMDEARELDLADR 262 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC-------------HHHHHHHHHHHHhCChhhH
Confidence 457779999999999999999999999999999999999999998863 2346655555554432
Q ss_pred --CchhhhhHHH
Q psy5931 159 --ESMSRKYLAK 168 (173)
Q Consensus 159 --~~k~Rk~laR 168 (173)
|.|+-||+-|
T Consensus 263 yiNsK~aKy~LR 274 (517)
T PF12569_consen 263 YINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHHHH
Confidence 5666666655
No 115
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=79.15 E-value=13 Score=29.95 Aligned_cols=101 Identities=11% Similarity=0.042 Sum_probs=76.5
Q ss_pred HHHHHHhCCChHHHHHHHHhhcC-CCCCc-HHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHH
Q psy5931 5 FGKIARKHHLTSVCLDSLFRLYT-IPSVP-IVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEF 82 (173)
Q Consensus 5 fa~iARkh~l~~vc~~~L~ki~~-lp~i~-v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~ 82 (173)
-|..+-..|=++-|+..|.++-+ .|+-+ +.+|.+.+ +.+|+.. +++..+...++..--.|-..+...+-
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~l---a~a~y~~------~~y~~A~~~~~~fi~~yP~~~~~~~A 81 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLML---AYAYYKQ------GDYEEAIAAYERFIKLYPNSPKADYA 81 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHH---HHHHHHT------T-HHHHHHHHHHHHHH-TT-TTHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHH---HHHHHHc------CCHHHHHHHHHHHHHHCCCCcchhhH
Confidence 45666678889999999999875 67544 66676644 8899984 68999999999998899999999999
Q ss_pred HHHHHHHHHHhCCc-----------hHHHHHHHHHHccchhhH
Q psy5931 83 YALKGMLLAQIGRS-----------AEANKAFSAAVQMHDVMV 114 (173)
Q Consensus 83 ~~LKG~fl~~Lg~~-----------deA~~~F~~Avql~~~~~ 114 (173)
+.++|+...++.+. .+|-..|..-+.-.|+.+
T Consensus 82 ~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~ 124 (203)
T PF13525_consen 82 LYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSE 124 (203)
T ss_dssp HHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTST
T ss_pred HHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCch
Confidence 99999987766433 478889999999999755
No 116
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=79.13 E-value=37 Score=30.26 Aligned_cols=114 Identities=14% Similarity=0.037 Sum_probs=78.0
Q ss_pred hHHHHHHHhCCChHHHHHHHHhhcC-CCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhH-
Q psy5931 3 IQFGKIARKHHLTSVCLDSLFRLYT-IPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTA- 80 (173)
Q Consensus 3 ~~fa~iARkh~l~~vc~~~L~ki~~-lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qka- 80 (173)
..+|....+.|-++.++..|.+... .|+=+ ..++.-++.-.++- +++....++.++..--. .+..+
T Consensus 267 ~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~-~~~~~~l~~~~~l~--------~~~~~~~~~~~e~~lk~---~p~~~~ 334 (409)
T TIGR00540 267 IALAEHLIDCDDHDSAQEIIFDGLKKLGDDR-AISLPLCLPIPRLK--------PEDNEKLEKLIEKQAKN---VDDKPK 334 (409)
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHhhCCCcc-cchhHHHHHhhhcC--------CCChHHHHHHHHHHHHh---CCCChh
Confidence 3567888889999999999999777 55432 11111222222221 22344566666665543 33444
Q ss_pred -HHHHHHHHHHHHhCCchHHHHHHH--HHHccchhhHHHHHHHHHhHHhhcC
Q psy5931 81 -EFYALKGMLLAQIGRSAEANKAFS--AAVQMHDVMVKAWALWGDYMEAQFT 129 (173)
Q Consensus 81 -E~~~LKG~fl~~Lg~~deA~~~F~--~Avql~~~~~kaW~~WG~~~d~~f~ 129 (173)
.+.--=|-++.+.|++++|-+.|. .+++.+|+..- ....|..+++.-.
T Consensus 335 ~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~ 385 (409)
T TIGR00540 335 CCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGD 385 (409)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCC
Confidence 777778999999999999999999 68888887655 5588999988854
No 117
>KOG1155|consensus
Probab=78.70 E-value=3.8 Score=38.96 Aligned_cols=67 Identities=15% Similarity=0.172 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCCCchh
Q psy5931 83 YALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKESMS 162 (173)
Q Consensus 83 ~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~~~k~ 162 (173)
-..-|..++-.+++|.|-..|.-|+++.|...-+|..=|+=.-.|=.. .-||.||=.|+.. ++..-
T Consensus 333 CCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt-------------~AAi~sYRrAvdi-~p~Dy 398 (559)
T KOG1155|consen 333 CCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNT-------------HAAIESYRRAVDI-NPRDY 398 (559)
T ss_pred eeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhccc-------------HHHHHHHHHHHhc-CchhH
Confidence 344577888889999999999999999999999999888743333211 2389999999877 44443
Q ss_pred h
Q psy5931 163 R 163 (173)
Q Consensus 163 R 163 (173)
|
T Consensus 399 R 399 (559)
T KOG1155|consen 399 R 399 (559)
T ss_pred H
Confidence 3
No 118
>KOG1126|consensus
Probab=78.23 E-value=12 Score=36.59 Aligned_cols=108 Identities=15% Similarity=0.115 Sum_probs=77.5
Q ss_pred HHHHHHhCCChHHHHHHHHhhcCCCCCc--------HHHHHHHHHHHHHHHhhhhccCCh----------------hHHH
Q psy5931 5 FGKIARKHHLTSVCLDSLFRLYTIPSVP--------IVDCFEKIRQQVKCYLQMAALDGK----------------NQLQ 60 (173)
Q Consensus 5 fa~iARkh~l~~vc~~~L~ki~~lp~i~--------v~daF~KlrEq~kc~l~~~~~~~~----------------~el~ 60 (173)
+|=|..|++-.|.+...+.|-..+.-.. +..--.|..+++.++++.|-+.+| ..+.
T Consensus 495 lG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~ 574 (638)
T KOG1126|consen 495 LGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYV 574 (638)
T ss_pred hhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchH
Confidence 4567778888888888888865543111 222345666777777775555433 3467
Q ss_pred HHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHH
Q psy5931 61 EGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVK 115 (173)
Q Consensus 61 ~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~k 115 (173)
++|.++|..-. -.+|-+-.|+|=|.++-++|+.+.|-+-|+-|..++|....
T Consensus 575 eal~~LEeLk~---~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 575 EALQELEELKE---LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHHHHH---hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 77777777665 56888889999999999999999999999999999887543
No 119
>KOG0495|consensus
Probab=78.02 E-value=6.6 Score=38.97 Aligned_cols=67 Identities=15% Similarity=0.169 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCC
Q psy5931 79 TAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQK 158 (173)
Q Consensus 79 kaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~ 158 (173)
.+.+|.=-..|.--+|..|||-+....|++..|.++|.|..-|...+++- --+.|=..|+++.+++.
T Consensus 650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~-------------~ie~aR~aY~~G~k~cP 716 (913)
T KOG0495|consen 650 TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQME-------------NIEMAREAYLQGTKKCP 716 (913)
T ss_pred cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHH-------------HHHHHHHHHHhccccCC
Confidence 34555555667778888899999999999999999999998888887773 23446667888887653
No 120
>PRK14574 hmsH outer membrane protein; Provisional
Probab=77.78 E-value=50 Score=33.13 Aligned_cols=32 Identities=6% Similarity=-0.032 Sum_probs=20.6
Q ss_pred HHHHHHhCCchHHHHHHHHHHccchhhHHHHH
Q psy5931 87 GMLLAQIGRSAEANKAFSAAVQMHDVMVKAWA 118 (173)
Q Consensus 87 G~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~ 118 (173)
|.++...|++++|-..|..++..+|+-+.++.
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~ 140 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPTNPDLIS 140 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Confidence 55666666666666666666666666666664
No 121
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=76.84 E-value=3.1 Score=38.12 Aligned_cols=50 Identities=30% Similarity=0.439 Sum_probs=40.3
Q ss_pred HHHHHHHhhhcc----cc-CCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhH
Q psy5931 59 LQEGLEVIEHTN----LK-YLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMV 114 (173)
Q Consensus 59 l~~gL~vi~~tn----l~-~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~ 114 (173)
-..||.+|+--- |+ || -++..||.|+.+||+.+||..+|..|+.+-.+-+
T Consensus 345 p~agLa~ve~L~~~~~L~gy~------~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~a 399 (415)
T COG4941 345 PAAGLAMVEALLARPRLDGYH------LYHAARADLLARLGRVEEARAAYDRAIALARNAA 399 (415)
T ss_pred HHhHHHHHHHhhccccccccc------ccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChH
Confidence 457787777543 43 44 2678999999999999999999999999988755
No 122
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=76.83 E-value=14 Score=34.94 Aligned_cols=51 Identities=12% Similarity=0.042 Sum_probs=44.9
Q ss_pred hhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhc
Q psy5931 78 MTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQF 128 (173)
Q Consensus 78 qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f 128 (173)
-..=|.-++|.++.+.|+.++|.+.|..|+.++|..+=.|...|.-+-+.-
T Consensus 338 ~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g 388 (484)
T COG4783 338 DNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGG 388 (484)
T ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcC
Confidence 456678899999999999999999999999999999989988887766553
No 123
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=76.82 E-value=34 Score=34.82 Aligned_cols=133 Identities=8% Similarity=0.001 Sum_probs=81.9
Q ss_pred hHHHHHHHhCCChHHHHHHHHhhcCC-CCCc---HHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhcc----ccCC
Q psy5931 3 IQFGKIARKHHLTSVCLDSLFRLYTI-PSVP---IVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTN----LKYL 74 (173)
Q Consensus 3 ~~fa~iARkh~l~~vc~~~L~ki~~l-p~i~---v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tn----l~~F 74 (173)
.++...+...|-++-++..+..-... |+-. ...++ -+++.-.. +..-+-++++.+...+ +.||
T Consensus 35 ~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~--------l~~q~~~~-~~~~lv~~l~~~~~~~~~~~ve~~ 105 (906)
T PRK14720 35 DDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGI--------LSLSRRPL-NDSNLLNLIDSFSQNLKWAIVEHI 105 (906)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHH--------HHHhhcch-hhhhhhhhhhhcccccchhHHHHH
Confidence 45667776777777777777654443 3222 22222 23332110 1111335555555444 1122
Q ss_pred Cc-----hhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHH
Q psy5931 75 TK-----EMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTC 149 (173)
Q Consensus 75 ~~-----~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~C 149 (173)
.. ...-..++-.|+.+.++|+.++|..+|..++.++|.-+-+--.-|+++..+ .-. ++..+...||.-
T Consensus 106 ~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~--dL~-----KA~~m~~KAV~~ 178 (906)
T PRK14720 106 CDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE--DKE-----KAITYLKKAIYR 178 (906)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh--hHH-----HHHHHHHHHHHH
Confidence 11 111235666799999999999999999999999999999999999999888 222 556666666655
Q ss_pred HH
Q psy5931 150 FM 151 (173)
Q Consensus 150 yL 151 (173)
|+
T Consensus 179 ~i 180 (906)
T PRK14720 179 FI 180 (906)
T ss_pred HH
Confidence 44
No 124
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=76.82 E-value=4.2 Score=23.47 Aligned_cols=32 Identities=16% Similarity=0.119 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHccchh
Q psy5931 81 EFYALKGMLLAQIGRSAEANKAFSAAVQMHDV 112 (173)
Q Consensus 81 E~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~ 112 (173)
.-+..-|.++...|++++|.+.+..|+.+...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 34 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRER 34 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHHH
Confidence 34556789999999999999999999987553
No 125
>PRK10941 hypothetical protein; Provisional
Probab=75.62 E-value=29 Score=30.11 Aligned_cols=78 Identities=15% Similarity=0.078 Sum_probs=61.8
Q ss_pred CCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHcc
Q psy5931 30 SVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQM 109 (173)
Q Consensus 30 ~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql 109 (173)
..+-.+...++....|--+.. .+++..+|.+++..-. |. |..+.-.+=||+++.+||....|-.-+...|..
T Consensus 173 ~a~~~~il~Rml~nLK~~~~~-----~~~~~~AL~~~e~ll~--l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 173 EADNIEVIRKLLDTLKAALME-----EKQMELALRASEALLQ--FD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred CCCHHHHHHHHHHHHHHHHHH-----cCcHHHHHHHHHHHHH--hC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 456777889999888844432 4679999999997665 33 444456677999999999999999999999999
Q ss_pred chhhHH
Q psy5931 110 HDVMVK 115 (173)
Q Consensus 110 ~~~~~k 115 (173)
+|.-|.
T Consensus 245 ~P~dp~ 250 (269)
T PRK10941 245 CPEDPI 250 (269)
T ss_pred CCCchh
Confidence 997653
No 126
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=75.32 E-value=18 Score=28.83 Aligned_cols=116 Identities=19% Similarity=0.235 Sum_probs=75.8
Q ss_pred CCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHc
Q psy5931 29 PSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQ 108 (173)
Q Consensus 29 p~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avq 108 (173)
|..+-++.|. ++.-.++ ++.+.++.+.++...=.|-..+-...-----|-.+.+-|++++|-.++..-+.
T Consensus 6 ~~~~~~~ly~----~a~~~l~------~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 6 PDKSPQELYQ----EAQEALQ------KGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred CCCCHHHHHH----HHHHHHH------hCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5555555554 3555555 35688888888776666554443333333347778889999999999999999
Q ss_pred cchhhHH---HHHHHHH--h------HHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCCCc
Q psy5931 109 MHDVMVK---AWALWGD--Y------MEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKES 160 (173)
Q Consensus 109 l~~~~~k---aW~~WG~--~------~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~~~ 160 (173)
+||+.++ ++..=|- | +..+| .+.++-+...+|+.-|-+=++-+.++
T Consensus 76 LhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~------~~drD~~~~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 76 LHPTHPNVDYAYYMRGLSYYEQDEGSLQSFF------RSDRDPTPARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred hCCCCCCccHHHHHHHHHHHHHhhhHHhhhc------ccccCcHHHHHHHHHHHHHHHHCcCC
Confidence 9998774 3333331 1 11223 33467778889999988888766544
No 127
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=75.01 E-value=13 Score=31.56 Aligned_cols=70 Identities=17% Similarity=0.194 Sum_probs=47.7
Q ss_pred hhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhH------HHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHH
Q psy5931 77 EMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMV------KAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCF 150 (173)
Q Consensus 77 ~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~------kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~Cy 150 (173)
+.-+++|.-=|......|++++|-.+|..|..++.... ++|..=+..+.+. + ...|+.||
T Consensus 32 e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~---~-----------~~~Ai~~~ 97 (282)
T PF14938_consen 32 EEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG---D-----------PDEAIECY 97 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT---T-----------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh---C-----------HHHHHHHH
Confidence 46689999999999999999999999999988876433 3333322222222 2 24678888
Q ss_pred HHHchhCCCc
Q psy5931 151 MHACRHQKES 160 (173)
Q Consensus 151 LqA~~~~~~~ 160 (173)
.+|+.++...
T Consensus 98 ~~A~~~y~~~ 107 (282)
T PF14938_consen 98 EKAIEIYREA 107 (282)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhc
Confidence 8888765433
No 128
>KOG0547|consensus
Probab=74.32 E-value=5.5 Score=38.15 Aligned_cols=52 Identities=15% Similarity=0.139 Sum_probs=45.6
Q ss_pred chhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhh
Q psy5931 76 KEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQ 127 (173)
Q Consensus 76 ~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~ 127 (173)
+++.+..|..||.+..-|+++++|-.-|..|+.++|..+-+.++-+--+++.
T Consensus 390 dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~ 441 (606)
T KOG0547|consen 390 DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQ 441 (606)
T ss_pred CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHH
Confidence 4677889999999999999999999999999999999888877776655554
No 129
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=74.26 E-value=53 Score=27.78 Aligned_cols=48 Identities=23% Similarity=0.283 Sum_probs=37.5
Q ss_pred HHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccc
Q psy5931 59 LQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMH 110 (173)
Q Consensus 59 l~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~ 110 (173)
|+.++++.+..+ .+.+-++.+.--|.++.++|++++|-+.|......+
T Consensus 138 Y~~A~~~y~~e~----~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 138 YQKAAELYEQEG----SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp HHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHCC----ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 556666666666 467788899999999999999999999999887643
No 130
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=73.85 E-value=55 Score=28.36 Aligned_cols=110 Identities=15% Similarity=0.135 Sum_probs=67.6
Q ss_pred HHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHH
Q psy5931 7 KIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALK 86 (173)
Q Consensus 7 ~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LK 86 (173)
.+.-+.|=+|.+...|.++-... .|+- |-+-+..+..+.. +.+.+++++.+.+...- -| +....++..+
T Consensus 139 qi~L~~~R~dlA~k~l~~~~~~~----eD~~--l~qLa~awv~l~~--g~e~~~~A~y~f~El~~-~~--~~t~~~lng~ 207 (290)
T PF04733_consen 139 QILLKMNRPDLAEKELKNMQQID----EDSI--LTQLAEAWVNLAT--GGEKYQDAFYIFEELSD-KF--GSTPKLLNGL 207 (290)
T ss_dssp HHHHHTT-HHHHHHHHHHHHCCS----CCHH--HHHHHHHHHHHHH--TTTCCCHHHHHHHHHHC-CS----SHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC----CcHH--HHHHHHHHHHHHh--CchhHHHHHHHHHHHHh-cc--CCCHHHHHHH
Confidence 34455566666666666654432 1111 1222333333322 23457788888877433 33 3467889999
Q ss_pred HHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhh
Q psy5931 87 GMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQ 127 (173)
Q Consensus 87 G~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~ 127 (173)
+..+-.+|+++||.+....|+..+|+.+...+.=....-.+
T Consensus 208 A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~ 248 (290)
T PF04733_consen 208 AVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHL 248 (290)
T ss_dssp HHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999888877654444333
No 131
>PRK14574 hmsH outer membrane protein; Provisional
Probab=73.31 E-value=78 Score=31.76 Aligned_cols=124 Identities=13% Similarity=0.057 Sum_probs=82.0
Q ss_pred HHHHHhCCChHHHHHHHHhhcCCC-CCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHH
Q psy5931 6 GKIARKHHLTSVCLDSLFRLYTIP-SVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYA 84 (173)
Q Consensus 6 a~iARkh~l~~vc~~~L~ki~~lp-~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~ 84 (173)
+.++-..|-.+.++..+.+.. -| +.+ ..-++-.++.|..+ +++..++++.+...- ..+..++.+.
T Consensus 75 l~l~~~~G~~~~A~~~~eka~-~p~n~~----~~~llalA~ly~~~------gdyd~Aiely~kaL~---~dP~n~~~l~ 140 (822)
T PRK14574 75 LQIAGWAGRDQEVIDVYERYQ-SSMNIS----SRGLASAARAYRNE------KRWDQALALWQSSLK---KDPTNPDLIS 140 (822)
T ss_pred HHHHHHcCCcHHHHHHHHHhc-cCCCCC----HHHHHHHHHHHHHc------CCHHHHHHHHHHHHh---hCCCCHHHHH
Confidence 444555567777777777754 22 222 23444456677764 678899999988865 3334466666
Q ss_pred HHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhC
Q psy5931 85 LKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQ 157 (173)
Q Consensus 85 LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~ 157 (173)
.-++.+...|+.++|-+.+..++..+|...-. ...+..... ... ...|+..|-+++...
T Consensus 141 gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~--~~~-----------~~~AL~~~ekll~~~ 199 (822)
T PRK14574 141 GMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRA--TDR-----------NYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHh--cch-----------HHHHHHHHHHHHHhC
Confidence 66899999999999999999999999983332 444444322 111 223888888888763
No 132
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=72.21 E-value=5.3 Score=31.80 Aligned_cols=79 Identities=23% Similarity=0.359 Sum_probs=47.6
Q ss_pred CCcHHHHHHHHHHHHHHHhhhhccC-ChhHHHHHHHHhhhccccCCCc----------hhhHHHHHHHHHHHHHhCCchH
Q psy5931 30 SVPIVDCFEKIRQQVKCYLQMAALD-GKNQLQEGLEVIEHTNLKYLTK----------EMTAEFYALKGMLLAQIGRSAE 98 (173)
Q Consensus 30 ~i~v~daF~KlrEq~kc~l~~~~~~-~~~el~~gL~vi~~tnl~~F~~----------~qkaE~~~LKG~fl~~Lg~~de 98 (173)
+||..|+|.--==-+-||-.++.-. +-.+|.++|.--+. -|.||+- .=.+-. .-||.-+.-+|+.||
T Consensus 41 tiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~-aL~YFNRRGEL~qdeGklWIaaV-fsra~Al~~~Gr~~e 118 (144)
T PF12968_consen 41 TIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADR-ALRYFNRRGELHQDEGKLWIAAV-FSRAVALEGLGRKEE 118 (144)
T ss_dssp TS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH-HHHHHHHH--TTSTHHHHHHHHH-HHHHHHHHHTT-HHH
T ss_pred cCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHH-HHHHHhhccccccccchhHHHHH-HHHHHHHHhcCChHH
Confidence 4666677776666677776654321 12356777765543 3567753 112222 358899999999999
Q ss_pred HHHHHHHHHccc
Q psy5931 99 ANKAFSAAVQMH 110 (173)
Q Consensus 99 A~~~F~~Avql~ 110 (173)
|-+.|.+|..|-
T Consensus 119 A~~~fr~agEMi 130 (144)
T PF12968_consen 119 ALKEFRMAGEMI 130 (144)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998763
No 133
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=71.99 E-value=11 Score=35.27 Aligned_cols=57 Identities=12% Similarity=0.051 Sum_probs=43.1
Q ss_pred HHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhH---HHHHHHHHHHHHhCCchHHHHHHHHHHcc
Q psy5931 44 VKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTA---EFYALKGMLLAQIGRSAEANKAFSAAVQM 109 (173)
Q Consensus 44 ~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qka---E~~~LKG~fl~~Lg~~deA~~~F~~Avql 109 (173)
+-.|+++ +++.++++.++..--- .+.-+ ..|+.+|..+.++|+.|+|-..|..|+.+
T Consensus 82 G~AL~~l------GryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 82 GLSLFSK------GRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHc------CCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5556653 5688888887764331 12223 45899999999999999999999999997
No 134
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=70.80 E-value=50 Score=26.48 Aligned_cols=53 Identities=26% Similarity=0.161 Sum_probs=41.7
Q ss_pred HHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhH
Q psy5931 58 QLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMV 114 (173)
Q Consensus 58 el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~ 114 (173)
+|..-|+--. .|+ .++....-+.-+|.++.+.|+.++|-++|..+-..+-+..
T Consensus 18 ~Le~elk~~~-~n~---~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~ 70 (177)
T PF10602_consen 18 KLEAELKDAK-SNL---GKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPG 70 (177)
T ss_pred HHHHHHHHHH-hcc---chHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHH
Confidence 4555555544 344 6888888999999999999999999999999877765433
No 135
>KOG0376|consensus
Probab=69.61 E-value=3.3 Score=39.03 Aligned_cols=78 Identities=12% Similarity=0.055 Sum_probs=65.4
Q ss_pred chhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHch
Q psy5931 76 KEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACR 155 (173)
Q Consensus 76 ~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~ 155 (173)
++..|.+|.+|+.-+-|.+++-+|..=+..|++++|+..|+..-=|.+|+.+. +...|+.-|...+.
T Consensus 34 dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~-------------~~~~A~~~l~~~~~ 100 (476)
T KOG0376|consen 34 DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG-------------EFKKALLDLEKVKK 100 (476)
T ss_pred CCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH-------------HHHHHHHHHHHhhh
Confidence 45677888999999999999999999999999999999999999999998886 67789999998887
Q ss_pred hC-CCchhhhhH
Q psy5931 156 HQ-KESMSRKYL 166 (173)
Q Consensus 156 ~~-~~~k~Rk~l 166 (173)
+. ++.++++.|
T Consensus 101 l~Pnd~~~~r~~ 112 (476)
T KOG0376|consen 101 LAPNDPDATRKI 112 (476)
T ss_pred cCcCcHHHHHHH
Confidence 64 344455544
No 136
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=69.44 E-value=47 Score=25.22 Aligned_cols=97 Identities=14% Similarity=0.140 Sum_probs=67.0
Q ss_pred HHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHH
Q psy5931 5 FGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYA 84 (173)
Q Consensus 5 fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~ 84 (173)
.|-.-...|-++-++..-.+-.... .+-.+-.--+..-+-++..+ .++.+++.+++..--.+-.++-...+..
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~g-L~~~~~~~a~i~lastlr~L------G~~deA~~~L~~~~~~~p~~~~~~~l~~ 79 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAG-LSGADRRRALIQLASTLRNL------GRYDEALALLEEALEEFPDDELNAALRV 79 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHCCCccccHHHHH
Confidence 4555566788888877776643321 11112222333456677765 5788999999877555555567888889
Q ss_pred HHHHHHHHhCCchHHHHHHHHHHc
Q psy5931 85 LKGMLLAQIGRSAEANKAFSAAVQ 108 (173)
Q Consensus 85 LKG~fl~~Lg~~deA~~~F~~Avq 108 (173)
+-++.+..+|+.+||-..+-.++-
T Consensus 80 f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 80 FLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999987764
No 137
>KOG2376|consensus
Probab=69.00 E-value=15 Score=35.85 Aligned_cols=27 Identities=19% Similarity=0.311 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHH
Q psy5931 81 EFYALKGMLLAQIGRSAEANKAFSAAV 107 (173)
Q Consensus 81 E~~~LKG~fl~~Lg~~deA~~~F~~Av 107 (173)
.+.-|+|-++-++|++|+|...|..-+
T Consensus 111 ~ll~L~AQvlYrl~~ydealdiY~~L~ 137 (652)
T KOG2376|consen 111 KLLELRAQVLYRLERYDEALDIYQHLA 137 (652)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 355566666666666666666666553
No 138
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=69.00 E-value=5.4 Score=23.57 Aligned_cols=25 Identities=28% Similarity=0.165 Sum_probs=21.9
Q ss_pred chhhHHHHHHHHHHHHHhCCchHHH
Q psy5931 76 KEMTAEFYALKGMLLAQIGRSAEAN 100 (173)
Q Consensus 76 ~~qkaE~~~LKG~fl~~Lg~~deA~ 100 (173)
.|.-++.+...|.++...|+.++|.
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3566889999999999999999985
No 139
>KOG1125|consensus
Probab=68.88 E-value=12 Score=36.02 Aligned_cols=41 Identities=32% Similarity=0.349 Sum_probs=36.8
Q ss_pred HHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHH
Q psy5931 85 LKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYME 125 (173)
Q Consensus 85 LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d 125 (173)
-.|+-+.+-|+..+|--+|.+||+-+|..+.||.--|...-
T Consensus 290 ~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qa 330 (579)
T KOG1125|consen 290 KEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQA 330 (579)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhh
Confidence 47999999999999999999999999999999987776543
No 140
>KOG0543|consensus
Probab=67.47 E-value=47 Score=30.81 Aligned_cols=94 Identities=14% Similarity=0.170 Sum_probs=69.2
Q ss_pred cHHHHHHHHHHHHHHHhhhhccC-ChhHHHHHHHHhhhccccCCCchhhHHHHHHH-------HHHHHHhCCchHHHHHH
Q psy5931 32 PIVDCFEKIRQQVKCYLQMAALD-GKNQLQEGLEVIEHTNLKYLTKEMTAEFYALK-------GMLLAQIGRSAEANKAF 103 (173)
Q Consensus 32 ~v~daF~KlrEq~kc~l~~~~~~-~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LK-------G~fl~~Lg~~deA~~~F 103 (173)
++.++=.+.||...-|++-..-. ....|..++..|+..+. |+++...+...+| ++-+.||+++++|-+.=
T Consensus 203 e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~--~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c 280 (397)
T KOG0543|consen 203 ERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRS--FDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESC 280 (397)
T ss_pred HHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhcccc--CCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHH
Confidence 47778888999988888732111 23557888888887766 3444444444444 67789999999999999
Q ss_pred HHHHccchhhHHHHHHHHHhHHhh
Q psy5931 104 SAAVQMHDVMVKAWALWGDYMEAQ 127 (173)
Q Consensus 104 ~~Avql~~~~~kaW~~WG~~~d~~ 127 (173)
..++.++|+.+||-..=|.-+-.+
T Consensus 281 ~kvLe~~~~N~KALyRrG~A~l~~ 304 (397)
T KOG0543|consen 281 NKVLELDPNNVKALYRRGQALLAL 304 (397)
T ss_pred HHHHhcCCCchhHHHHHHHHHHhh
Confidence 999999999999887776665544
No 141
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=67.19 E-value=53 Score=31.91 Aligned_cols=141 Identities=17% Similarity=0.155 Sum_probs=97.9
Q ss_pred HHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHH
Q psy5931 4 QFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFY 83 (173)
Q Consensus 4 ~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~ 83 (173)
.-+|++-+.|=++.+...|+++-- +==+-|.++.-+ ....+-.+ ++....+++.+..-+...+++-|++.-|
T Consensus 68 lAa~al~~e~k~~qA~~Ll~ql~~-~Ltd~Q~~~~~L---L~ael~la----~~q~~~Al~~L~~~~~~~ls~~Qq~Ry~ 139 (604)
T COG3107 68 LAARALVEEGKTAQAQALLNQLPQ-ELTDAQRAEKSL---LAAELALA----QKQPAAALQQLAKLLPADLSQNQQARYY 139 (604)
T ss_pred HHHHHHHHcCChHHHHHHHHhccc-cCCHHHHHHHHH---HHHHHHHh----ccChHHHHHHHhhcchhhcCHHHHHHHH
Confidence 346788888888889899988642 212333333333 22344443 4568899999999999999999999999
Q ss_pred HHHHHHHHHhCCchHHHHHHHHHHcc------chhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHH--HHHHHHHHch
Q psy5931 84 ALKGMLLAQIGRSAEANKAFSAAVQM------HDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVF--AVTCFMHACR 155 (173)
Q Consensus 84 ~LKG~fl~~Lg~~deA~~~F~~Avql------~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~--Ai~CyLqA~~ 155 (173)
..|+..++..|+.=+|-+.+-..=++ .++-.+.|..=+++.++.--..+ ..+. ++.+||..+|
T Consensus 140 q~~a~a~ea~~~~~~a~rari~~~~lL~~k~~q~nid~tW~ll~~~~~~~VIn~s---------a~e~~~~L~GWL~L~r 210 (604)
T COG3107 140 QARADALEARGDSIDAARARIAQDPLLSGKAKQANIDKTWQLLSEQANTGVINNS---------ADEGNAALQGWLDLAR 210 (604)
T ss_pred HHHHHHHhcccchHHHHHHHHHhhhhccchhHHHhHHHHHHHhhhhccccceecc---------cCCcccccchHHHHHH
Confidence 99999999999998888877554332 23455788877755554432221 2334 8889999998
Q ss_pred hCCCch
Q psy5931 156 HQKESM 161 (173)
Q Consensus 156 ~~~~~k 161 (173)
.++...
T Consensus 211 v~~~~~ 216 (604)
T COG3107 211 VYKDNG 216 (604)
T ss_pred HHHhcc
Confidence 876544
No 142
>KOG4162|consensus
Probab=67.13 E-value=29 Score=34.74 Aligned_cols=52 Identities=25% Similarity=0.349 Sum_probs=46.6
Q ss_pred hhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhc
Q psy5931 77 EMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQF 128 (173)
Q Consensus 77 ~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f 128 (173)
+-.+-.|+++|..+...|+.+||.++|-.|+.++|..+..-..-|..+....
T Consensus 681 ~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G 732 (799)
T KOG4162|consen 681 PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELG 732 (799)
T ss_pred hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC
Confidence 4556778999999999999999999999999999999999999998888877
No 143
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=67.12 E-value=46 Score=30.50 Aligned_cols=90 Identities=13% Similarity=0.065 Sum_probs=66.9
Q ss_pred hHHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHH
Q psy5931 3 IQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEF 82 (173)
Q Consensus 3 ~~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~ 82 (173)
..+|++..-.+-..-++..|++....+... ..=|.+|++.+++ ++++..||.+....-- ..|..-+-
T Consensus 204 ~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d----~~LL~~Qa~fLl~------k~~~~lAL~iAk~av~---lsP~~f~~ 270 (395)
T PF09295_consen 204 VLLARVYLLMNEEVEAIRLLNEALKENPQD----SELLNLQAEFLLS------KKKYELALEIAKKAVE---LSPSEFET 270 (395)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHh------cCCHHHHHHHHHHHHH---hCchhHHH
Confidence 346777777787778888888865432222 5667899999998 4678889988765433 35566677
Q ss_pred HHHHHHHHHHhCCchHHHHHHHH
Q psy5931 83 YALKGMLLAQIGRSAEANKAFSA 105 (173)
Q Consensus 83 ~~LKG~fl~~Lg~~deA~~~F~~ 105 (173)
+..=+..+.++|++|+|-.+-..
T Consensus 271 W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 271 WYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhc
Confidence 88889999999999999976653
No 144
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=66.84 E-value=82 Score=28.86 Aligned_cols=91 Identities=12% Similarity=0.080 Sum_probs=65.0
Q ss_pred HHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHH---hCCchHHHHHHHHHHccc-hhhHHHHHHHHHhHHhhcCCCCC
Q psy5931 58 QLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQ---IGRSAEANKAFSAAVQMH-DVMVKAWALWGDYMEAQFTNPSP 133 (173)
Q Consensus 58 el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~---Lg~~deA~~~F~~Avql~-~~~~kaW~~WG~~~d~~f~~~~~ 133 (173)
+|.+.|+.+-+. .-.....+-.+.|.-|.+ -|+.|+|-+....++.-+ ...+..+..+|...-.+|.+...
T Consensus 162 ~Lve~l~~~p~~-----~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~ 236 (374)
T PF13281_consen 162 KLVETLEALPTC-----DVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNF 236 (374)
T ss_pred HHHHHhhccCcc-----chhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCc
Confidence 355555544333 344566677888999999 999999999999855544 46789999999998888876421
Q ss_pred CCCCchhhhHHHHHHHHHHHchhC
Q psy5931 134 PGSAPNMVLGVFAVTCFMHACRHQ 157 (173)
Q Consensus 134 ~~~~~~~~~~~~Ai~CyLqA~~~~ 157 (173)
++.....+|+.+|.+|-..+
T Consensus 237 ----~d~~~ldkAi~~Y~kgFe~~ 256 (374)
T PF13281_consen 237 ----TDRESLDKAIEWYRKGFEIE 256 (374)
T ss_pred ----cchHHHHHHHHHHHHHHcCC
Confidence 33444777888888776654
No 145
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=66.70 E-value=11 Score=33.04 Aligned_cols=50 Identities=28% Similarity=0.416 Sum_probs=33.0
Q ss_pred CchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhH
Q psy5931 75 TKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYM 124 (173)
Q Consensus 75 ~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~ 124 (173)
+++.+|.++.=||.+...+|-.+=|---|++|+.+.|..|.++---|-|+
T Consensus 60 ~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl 109 (297)
T COG4785 60 TDEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYL 109 (297)
T ss_pred ChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666665555554
No 146
>KOG2047|consensus
Probab=66.59 E-value=1.1e+02 Score=30.68 Aligned_cols=115 Identities=14% Similarity=0.261 Sum_probs=77.2
Q ss_pred hHHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHH---HHHHhhhhccCChhH-HHHHHHHhhhccccCCCchh
Q psy5931 3 IQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQ---VKCYLQMAALDGKNQ-LQEGLEVIEHTNLKYLTKEM 78 (173)
Q Consensus 3 ~~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq---~kc~l~~~~~~~~~e-l~~gL~vi~~tnl~~F~~~q 78 (173)
+.+|+.=-+|||-.-++..+.|.-. +++-.+-+.=-+=. |---|+.+ ...| |+++++++ |++
T Consensus 590 LlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~---~TR~iYekaIe~L---------p~~ 655 (835)
T KOG2047|consen 590 LLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVP---RTREIYEKAIESL---------PDS 655 (835)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCc---ccHHHHHHHHHhC---------ChH
Confidence 4567777788888888888887422 34433322211111 11122221 1223 77887774 666
Q ss_pred hHHHHHHH-HHHHHHhCCchHHHHHHHHHHccch--hhHHHHHHHHHhHHhhcCCC
Q psy5931 79 TAEFYALK-GMLLAQIGRSAEANKAFSAAVQMHD--VMVKAWALWGDYMEAQFTNP 131 (173)
Q Consensus 79 kaE~~~LK-G~fl~~Lg~~deA~~~F~~Avql~~--~~~kaW~~WG~~~d~~f~~~ 131 (173)
++.-+.|| +.+=.+||..|.|-..|+.+-|++| ..++-|-+|-.|=-+-.+++
T Consensus 656 ~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGned 711 (835)
T KOG2047|consen 656 KAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNED 711 (835)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHH
Confidence 77777777 6788999999999999999999999 46799999999876666554
No 147
>KOG1840|consensus
Probab=66.43 E-value=89 Score=29.76 Aligned_cols=119 Identities=13% Similarity=0.114 Sum_probs=76.8
Q ss_pred HHHHHHhCCChHHH-------HHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhH-HHHHHHHhhhccccCCCc
Q psy5931 5 FGKIARKHHLTSVC-------LDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQ-LQEGLEVIEHTNLKYLTK 76 (173)
Q Consensus 5 fa~iARkh~l~~vc-------~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~e-l~~gL~vi~~tnl~~F~~ 76 (173)
||.+=|..+=++-+ ++++..+++--+.-|.-++..| +..|+.-.....-.+ +..++++.+. +.-=+.
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nL---a~ly~~~GKf~EA~~~~e~Al~I~~~--~~~~~~ 321 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNL---AVLYYKQGKFAEAEEYCERALEIYEK--LLGASH 321 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH---HHHHhccCChHHHHHHHHHHHHHHHH--hhccCh
Confidence 55555555544444 4444455554444455555544 445544211111112 7788999988 333357
Q ss_pred hhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccch--------hhHHHHHHHHHhHHhhc
Q psy5931 77 EMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHD--------VMVKAWALWGDYMEAQF 128 (173)
Q Consensus 77 ~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~--------~~~kaW~~WG~~~d~~f 128 (173)
+.-+..+..=|.+..-.|++|+|.+.|..|+.+.. +.++--..-|...-++-
T Consensus 322 ~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~g 381 (508)
T KOG1840|consen 322 PEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMG 381 (508)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhc
Confidence 88888999999999999999999999999887655 56677766666666554
No 148
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=66.21 E-value=61 Score=25.78 Aligned_cols=101 Identities=13% Similarity=0.081 Sum_probs=77.0
Q ss_pred HHHHHhCCChHHHHHHHHhhcC-CCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHH
Q psy5931 6 GKIARKHHLTSVCLDSLFRLYT-IPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYA 84 (173)
Q Consensus 6 a~iARkh~l~~vc~~~L~ki~~-lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~ 84 (173)
|.-+-+.|=++.++..|..+-+ .|.=|-.+ +---..+-+|+. .+++.+|+..++..-=-+-+-++-.--+.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~--qAqL~l~yayy~------~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAE--QAQLDLAYAYYK------QGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccH--HHHHHHHHHHHH------ccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 4556677888889999999876 66544333 122233567887 47899999999988778888899999999
Q ss_pred HHHHHHHHhCC---------------chHHHHHHHHHHccchhhH
Q psy5931 85 LKGMLLAQIGR---------------SAEANKAFSAAVQMHDVMV 114 (173)
Q Consensus 85 LKG~fl~~Lg~---------------~deA~~~F~~Avql~~~~~ 114 (173)
++|+...+... ..+|-..|..-|+..|+..
T Consensus 89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 99999998876 6678888888888877654
No 149
>KOG3060|consensus
Probab=65.86 E-value=8.5 Score=34.02 Aligned_cols=55 Identities=16% Similarity=0.183 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchh
Q psy5931 55 GKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDV 112 (173)
Q Consensus 55 ~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~ 112 (173)
+.++..-+...|+.-+-.| |-.-..-.||||+++..|+++||.+.|..-++=+|+
T Consensus 64 d~~~~~lAq~C~~~L~~~f---p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt 118 (289)
T KOG3060|consen 64 DTGRDDLAQKCINQLRDRF---PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPT 118 (289)
T ss_pred HhcchHHHHHHHHHHHHhC---CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcc
No 150
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=65.70 E-value=80 Score=26.48 Aligned_cols=107 Identities=12% Similarity=-0.007 Sum_probs=77.9
Q ss_pred HHHHHhCCChHHHHHHHHhhcC-CCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHH
Q psy5931 6 GKIARKHHLTSVCLDSLFRLYT-IPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYA 84 (173)
Q Consensus 6 a~iARkh~l~~vc~~~L~ki~~-lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~ 84 (173)
|.-+-+.|=++.++..+.++-+ .|.-+ .+-.-.-..+.+|+++ +++.++++..+..--.|-+.+....-+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~--~a~~a~l~la~ayy~~------~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGP--YSQQVQLDLIYAYYKN------ADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHHHhc------CCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 4455566788888888888755 34332 1222244678899985 6799999999998778888899999999
Q ss_pred HHHHHHHHhCC------------------chHHHHHHHHHHccchhhHHHHHHH
Q psy5931 85 LKGMLLAQIGR------------------SAEANKAFSAAVQMHDVMVKAWALW 120 (173)
Q Consensus 85 LKG~fl~~Lg~------------------~deA~~~F~~Avql~~~~~kaW~~W 120 (173)
++|+.+..+++ ..+|-+.|..-|...|+..-+-...
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~ 164 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDAT 164 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHH
Confidence 99998766652 2467789999999999766444433
No 151
>KOG1155|consensus
Probab=64.76 E-value=33 Score=32.87 Aligned_cols=53 Identities=19% Similarity=0.191 Sum_probs=46.6
Q ss_pred chhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhc
Q psy5931 76 KEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQF 128 (173)
Q Consensus 76 ~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f 128 (173)
+|.-+.++.-=|...+||++.+||-+.|--|+-..++.+-+.-.-|+..+++-
T Consensus 428 kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~ 480 (559)
T KOG1155|consen 428 KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELK 480 (559)
T ss_pred CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 46667888888999999999999999999999999998888888888877773
No 152
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=64.62 E-value=15 Score=24.30 Aligned_cols=36 Identities=11% Similarity=0.039 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHH
Q psy5931 82 FYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAW 117 (173)
Q Consensus 82 ~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW 117 (173)
-+..-+.=+.++|++++|-+.-..+++++|....+=
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 345557778899999999999999999999766543
No 153
>KOG2002|consensus
Probab=62.76 E-value=12 Score=38.20 Aligned_cols=58 Identities=17% Similarity=0.143 Sum_probs=48.3
Q ss_pred hhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhh
Q psy5931 56 KNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVM 113 (173)
Q Consensus 56 ~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~ 113 (173)
+.++....++-++.-..-+.+..+||=|+..|--....|++|.|-+.|-.|++-++..
T Consensus 283 K~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~ 340 (1018)
T KOG2002|consen 283 KKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN 340 (1018)
T ss_pred cccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC
Confidence 4566666666665555557888999999999999999999999999999999998864
No 154
>PRK15331 chaperone protein SicA; Provisional
Probab=62.73 E-value=65 Score=26.31 Aligned_cols=51 Identities=16% Similarity=0.062 Sum_probs=39.4
Q ss_pred CchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHh
Q psy5931 75 TKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEA 126 (173)
Q Consensus 75 ~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~ 126 (173)
+++.=..+|+ -|.=+-.-|+++||.+.|.-..-+++..++=|.-+|-.+-.
T Consensus 33 s~~~le~iY~-~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~ 83 (165)
T PRK15331 33 PQDMMDGLYA-HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQL 83 (165)
T ss_pred CHHHHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 4444444554 57777788999999999999999999889989888876543
No 155
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=62.70 E-value=19 Score=31.29 Aligned_cols=56 Identities=21% Similarity=0.387 Sum_probs=44.5
Q ss_pred hhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccch-----hhHHHHHH
Q psy5931 56 KNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHD-----VMVKAWAL 119 (173)
Q Consensus 56 ~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~-----~~~kaW~~ 119 (173)
.+++.++|++++.. ...|...|.=.++-++||.|-|.+.|..+-++++ +++.+|..
T Consensus 115 ~~~~~~AL~~l~~~--------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~ 175 (290)
T PF04733_consen 115 EGDYEEALKLLHKG--------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVN 175 (290)
T ss_dssp CCHHHHHHCCCTTT--------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcc--------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 35688888888764 3468999999999999999999999999999887 34566654
No 156
>KOG1840|consensus
Probab=62.08 E-value=30 Score=32.82 Aligned_cols=93 Identities=16% Similarity=0.178 Sum_probs=59.9
Q ss_pred CChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCch--hhHHHHHHHHHHH
Q psy5931 13 HLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKE--MTAEFYALKGMLL 90 (173)
Q Consensus 13 ~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~--qkaE~~~LKG~fl 90 (173)
-+.+-++++..++++.+.-+|...+.-+- +-|.....-.....=++.+|.++. +.|... +.+..+.-=|-.+
T Consensus 304 ~~~e~Al~I~~~~~~~~~~~v~~~l~~~~--~~~~~~~~~Eea~~l~q~al~i~~----~~~g~~~~~~a~~~~nl~~l~ 377 (508)
T KOG1840|consen 304 EYCERALEIYEKLLGASHPEVAAQLSELA--AILQSMNEYEEAKKLLQKALKIYL----DAPGEDNVNLAKIYANLAELY 377 (508)
T ss_pred HHHHHHHHHHHHhhccChHHHHHHHHHHH--HHHHHhcchhHHHHHHHHHHHHHH----hhccccchHHHHHHHHHHHHH
Confidence 34556667777766654444444433221 112222110001111778899998 445543 6899999999999
Q ss_pred HHhCCchHHHHHHHHHHccch
Q psy5931 91 AQIGRSAEANKAFSAAVQMHD 111 (173)
Q Consensus 91 ~~Lg~~deA~~~F~~Avql~~ 111 (173)
-+.|+++||...|..||++--
T Consensus 378 ~~~gk~~ea~~~~k~ai~~~~ 398 (508)
T KOG1840|consen 378 LKMGKYKEAEELYKKAIQILR 398 (508)
T ss_pred HHhcchhHHHHHHHHHHHHHH
Confidence 999999999999999999863
No 157
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=61.99 E-value=7.1 Score=23.05 Aligned_cols=27 Identities=11% Similarity=0.151 Sum_probs=23.3
Q ss_pred HHHHHHccchhhHHHHHHHHHhHHhhc
Q psy5931 102 AFSAAVQMHDVMVKAWALWGDYMEAQF 128 (173)
Q Consensus 102 ~F~~Avql~~~~~kaW~~WG~~~d~~f 128 (173)
+|..||.++|+.+.+|..-|.++...-
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g 27 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQG 27 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCc
Confidence 378999999999999999998877653
No 158
>KOG0548|consensus
Probab=61.17 E-value=23 Score=33.97 Aligned_cols=87 Identities=11% Similarity=0.114 Sum_probs=63.3
Q ss_pred hHHHHHHHH-hhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCC
Q psy5931 57 NQLQEGLEV-IEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPG 135 (173)
Q Consensus 57 ~el~~gL~v-i~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~ 135 (173)
+++.++++. .+.++| + |...-+|..|---+.++|++++|.+==..++.+.|.-+|+|..-|.=...+.
T Consensus 16 ~d~~~ai~~~t~ai~l---~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg------- 84 (539)
T KOG0548|consen 16 GDFETAIRLFTEAIML---S-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLG------- 84 (539)
T ss_pred ccHHHHHHHHHHHHcc---C-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcc-------
Confidence 455565554 344555 3 4488899999999999999999999999999999999999988876443332
Q ss_pred CCchhhhHHHHHHHHHHHchhCCCc
Q psy5931 136 SAPNMVLGVFAVTCFMHACRHQKES 160 (173)
Q Consensus 136 ~~~~~~~~~~Ai~CyLqA~~~~~~~ 160 (173)
=-..|+..|=.|..++.+.
T Consensus 85 ------~~~eA~~ay~~GL~~d~~n 103 (539)
T KOG0548|consen 85 ------DYEEAILAYSEGLEKDPSN 103 (539)
T ss_pred ------cHHHHHHHHHHHhhcCCch
Confidence 1244777777777665443
No 159
>KOG0553|consensus
Probab=61.00 E-value=86 Score=28.11 Aligned_cols=93 Identities=14% Similarity=0.145 Sum_probs=63.5
Q ss_pred hCCChHHHHHHHHhhcCC-CCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHH
Q psy5931 11 KHHLTSVCLDSLFRLYTI-PSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGML 89 (173)
Q Consensus 11 kh~l~~vc~~~L~ki~~l-p~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~f 89 (173)
|-+-++-+++.-++--.| |+=+ +|.--|-+|-|-|. ++..+..-+++.-- -++.-++-|-==|+.
T Consensus 93 ~~~~Y~eAv~kY~~AI~l~P~nA---VyycNRAAAy~~Lg--------~~~~AVkDce~Al~---iDp~yskay~RLG~A 158 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIELDPTNA---VYYCNRAAAYSKLG--------EYEDAVKDCESALS---IDPHYSKAYGRLGLA 158 (304)
T ss_pred HhhhHHHHHHHHHHHHhcCCCcc---hHHHHHHHHHHHhc--------chHHHHHHHHHHHh---cChHHHHHHHHHHHH
Confidence 345555666655553232 2222 56667777766665 45556655554433 366777888888999
Q ss_pred HHHhCCchHHHHHHHHHHccchhhHHHH
Q psy5931 90 LAQIGRSAEANKAFSAAVQMHDVMVKAW 117 (173)
Q Consensus 90 l~~Lg~~deA~~~F~~Avql~~~~~kaW 117 (173)
+.-+|++++|-.+|..|+-++|.-.-.|
T Consensus 159 ~~~~gk~~~A~~aykKaLeldP~Ne~~K 186 (304)
T KOG0553|consen 159 YLALGKYEEAIEAYKKALELDPDNESYK 186 (304)
T ss_pred HHccCcHHHHHHHHHhhhccCCCcHHHH
Confidence 9999999999999999999999866333
No 160
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=59.93 E-value=1.3e+02 Score=28.99 Aligned_cols=53 Identities=19% Similarity=0.238 Sum_probs=44.4
Q ss_pred hHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhC--CchHHHHHHHHHHccchhh
Q psy5931 57 NQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIG--RSAEANKAFSAAVQMHDVM 113 (173)
Q Consensus 57 ~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg--~~deA~~~F~~Avql~~~~ 113 (173)
..+.++|++++..-. ..+-+-+++++|.+++.++ ..+-=..+|.-..+++|+.
T Consensus 323 ~~l~eal~~~e~~c~----~~~~~lpi~~~~~lle~~d~~~~~~l~~~~e~~~~~~P~~ 377 (547)
T PF14929_consen 323 GRLKEALNELEKFCI----SSTCALPIRLRAHLLEYFDQNNSSVLSSCLEDCLKKDPTM 377 (547)
T ss_pred ccHHHHHHHHHHhcc----CCCccchHHHHHHHHHHhCcccHHHHHHHHHHHhcCCCcH
Confidence 679999999998776 6788999999999999999 4566677888888888853
No 161
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=59.56 E-value=12 Score=26.71 Aligned_cols=35 Identities=20% Similarity=0.224 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchh
Q psy5931 78 MTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDV 112 (173)
Q Consensus 78 qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~ 112 (173)
.++.++.=+|.=...-|++|+|...|-+||+.+..
T Consensus 4 ~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 4 ERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 47778888888889999999999999999998765
No 162
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=59.17 E-value=19 Score=24.86 Aligned_cols=36 Identities=17% Similarity=0.067 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhh
Q psy5931 78 MTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVM 113 (173)
Q Consensus 78 qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~ 113 (173)
++|..+.-+|.=...-|++++|...|..|+......
T Consensus 4 ~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~ 39 (75)
T cd02678 4 QKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHA 39 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 567888889999999999999999999998875443
No 163
>KOG0550|consensus
Probab=58.65 E-value=26 Score=33.01 Aligned_cols=82 Identities=20% Similarity=0.150 Sum_probs=52.8
Q ss_pred hhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhH---------HHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHH
Q psy5931 78 MTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMV---------KAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVT 148 (173)
Q Consensus 78 qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~---------kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~ 148 (173)
-++|=+.++|..+-..++.|-|+.-|.++|.++|..- |.-..|-.==...|+.- .-.-|-.
T Consensus 201 ~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G----------~y~~A~E 270 (486)
T KOG0550|consen 201 TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNG----------NYRKAYE 270 (486)
T ss_pred chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhcc----------chhHHHH
Confidence 4455666777777777777888899999999999533 33333333333444433 2455888
Q ss_pred HHHHHchhCCCchhhhhHHHHhh
Q psy5931 149 CFMHACRHQKESMSRKYLAKVDY 171 (173)
Q Consensus 149 CyLqA~~~~~~~k~Rk~laRiLW 171 (173)
||=+|+..+.+. -+..+++.|
T Consensus 271 ~Yteal~idP~n--~~~naklY~ 291 (486)
T KOG0550|consen 271 CYTEALNIDPSN--KKTNAKLYG 291 (486)
T ss_pred HHHHhhcCCccc--cchhHHHHH
Confidence 999999986553 344554443
No 164
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=57.65 E-value=1.3e+02 Score=28.58 Aligned_cols=95 Identities=16% Similarity=0.256 Sum_probs=63.0
Q ss_pred HhCCChHHHHHHHHhhc----CCCCCcHHHHHHHHH--HHHHHHhh------hhccCChhHHHHHHHHhhhccccCCC--
Q psy5931 10 RKHHLTSVCLDSLFRLY----TIPSVPIVDCFEKIR--QQVKCYLQ------MAALDGKNQLQEGLEVIEHTNLKYLT-- 75 (173)
Q Consensus 10 Rkh~l~~vc~~~L~ki~----~lp~i~v~daF~Klr--Eq~kc~l~------~~~~~~~~el~~gL~vi~~tnl~~F~-- 75 (173)
|...+-+-|+.++.+.. .-|..++.++-.+.. ..++|+.. .....+..+....++-+.+++-..+.
T Consensus 319 ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~ 398 (608)
T PF10345_consen 319 KSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKL 398 (608)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccch
Confidence 33445567888888876 355677766544432 33444433 11222444566666666666554443
Q ss_pred -chhhHHHHHHHHHHHHHhCCchHHHHHHH
Q psy5931 76 -KEMTAEFYALKGMLLAQIGRSAEANKAFS 104 (173)
Q Consensus 76 -~~qkaE~~~LKG~fl~~Lg~~deA~~~F~ 104 (173)
+...+-+++|.|++....|+.+.|-..|.
T Consensus 399 ~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 399 YESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 67789999999999999999999999997
No 165
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=57.47 E-value=1.4e+02 Score=26.54 Aligned_cols=91 Identities=9% Similarity=0.021 Sum_probs=59.0
Q ss_pred HHHHHHHhCCChHHHHHHHHhhcC-CCC--CcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhH
Q psy5931 4 QFGKIARKHHLTSVCLDSLFRLYT-IPS--VPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTA 80 (173)
Q Consensus 4 ~fa~iARkh~l~~vc~~~L~ki~~-lp~--i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qka 80 (173)
-.|++|-..|=++.+...|.+... .|. +.+ -+.++.-+++. +++..+++.++.-.-. .|+-+
T Consensus 123 laA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~------~~~~a~l~l~~------~~~~~Al~~l~~l~~~---~P~~~ 187 (409)
T TIGR00540 123 KAAEAAQQRGDEARANQHLEEAAELAGNDNILV------EIARTRILLAQ------NELHAARHGVDKLLEM---APRHK 187 (409)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHH------HHHHHHHHHHC------CCHHHHHHHHHHHHHh---CCCCH
Confidence 457778888888888888887532 122 221 11235555552 4566666666554442 24445
Q ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHcc
Q psy5931 81 EFYALKGMLLAQIGRSAEANKAFSAAVQM 109 (173)
Q Consensus 81 E~~~LKG~fl~~Lg~~deA~~~F~~Avql 109 (173)
..+.+-|.++.+.|+.++|-+.+......
T Consensus 188 ~~l~ll~~~~~~~~d~~~a~~~l~~l~k~ 216 (409)
T TIGR00540 188 EVLKLAEEAYIRSGAWQALDDIIDNMAKA 216 (409)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 77888899999999999888888888754
No 166
>KOG1174|consensus
Probab=57.25 E-value=26 Score=33.28 Aligned_cols=66 Identities=17% Similarity=0.088 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHch
Q psy5931 79 TAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACR 155 (173)
Q Consensus 79 kaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~ 155 (173)
.--++.=-|..+...|++++|.--|+++..++|-..++.-.+|..+-+--.-+ -.+++.|||-++.
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e-----------~~~~L~~~Lf~~~ 296 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCE-----------QDSALMDYLFAKV 296 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHh-----------hHHHHHHHHHhhh
Confidence 44566777889999999999999999999999999999999998876554222 1457777776664
No 167
>KOG2796|consensus
Probab=56.59 E-value=46 Score=30.03 Aligned_cols=91 Identities=20% Similarity=0.219 Sum_probs=62.1
Q ss_pred HHHHHHhCCChHHHHHHHHhhcCC-------------CCCcHHHHHHHHHH-----HHHHHhhhhccCChhHHHHHHHHh
Q psy5931 5 FGKIARKHHLTSVCLDSLFRLYTI-------------PSVPIVDCFEKIRQ-----QVKCYLQMAALDGKNQLQEGLEVI 66 (173)
Q Consensus 5 fa~iARkh~l~~vc~~~L~ki~~l-------------p~i~v~daF~KlrE-----q~kc~l~~~~~~~~~el~~gL~vi 66 (173)
.|.+-|+.|.|.-.++.|-++.+. |--.|.+ .-|=-+ .+.|++.+ +|+.-.+++.
T Consensus 128 hAe~~~~lgnpqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~l-W~KRl~~Vmy~~~~~llG~------kEy~iS~d~~ 200 (366)
T KOG2796|consen 128 HAELQQYLGNPQESLDRLHKLKTVVSKILANLEQGLAEESSIRL-WRKRLGRVMYSMANCLLGM------KEYVLSVDAY 200 (366)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHH-HHHHHHHHHHHHHHHHhcc------hhhhhhHHHH
Confidence 467778888887666555443322 1111111 111111 24566665 7999999988
Q ss_pred hhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHH
Q psy5931 67 EHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFS 104 (173)
Q Consensus 67 ~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~ 104 (173)
++.-- ..++++..+.+==|-+..+.|+-+.|+..|.
T Consensus 201 ~~vi~--~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~ 236 (366)
T KOG2796|consen 201 HSVIK--YYPEQEPQLLSGLGRISMQIGDIKTAEKYFQ 236 (366)
T ss_pred HHHHH--hCCcccHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 87654 4579999999999999999999999999998
No 168
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=55.20 E-value=1.3e+02 Score=27.90 Aligned_cols=97 Identities=16% Similarity=0.140 Sum_probs=64.5
Q ss_pred HHHHHHhCCChHHHHHHHHhhcCC-CCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhc-cccCCCchhhHHH
Q psy5931 5 FGKIARKHHLTSVCLDSLFRLYTI-PSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHT-NLKYLTKEMTAEF 82 (173)
Q Consensus 5 fa~iARkh~l~~vc~~~L~ki~~l-p~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~t-nl~~F~~~qkaE~ 82 (173)
-||+.|..|-.+-++..+++...- +.++=- --+-+=|.+-||.-+ .++.++.+-...- +. ++-=++-.
T Consensus 273 ~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql-~~l~~~El~w~~~~~------~~w~~A~~~f~~L~~~---s~WSka~Y 342 (468)
T PF10300_consen 273 EGRLERLKGNLEEAIESFERAIESQSEWKQL-HHLCYFELAWCHMFQ------HDWEEAAEYFLRLLKE---SKWSKAFY 342 (468)
T ss_pred HHHHHHHhcCHHHHHHHHHHhccchhhHHhH-HHHHHHHHHHHHHHH------chHHHHHHHHHHHHhc---cccHHHHH
Confidence 489999999999999999985421 112211 122355666666653 4555555433221 12 23348899
Q ss_pred HHHHHHHHHHhCCc-------hHHHHHHHHHHccch
Q psy5931 83 YALKGMLLAQIGRS-------AEANKAFSAAVQMHD 111 (173)
Q Consensus 83 ~~LKG~fl~~Lg~~-------deA~~~F~~Avql~~ 111 (173)
.+++|..+..+|+. ++|.+.|..+-.+-.
T Consensus 343 ~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 343 AYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 99999999999999 888888888755543
No 169
>KOG2002|consensus
Probab=54.21 E-value=42 Score=34.49 Aligned_cols=78 Identities=19% Similarity=0.303 Sum_probs=68.0
Q ss_pred CcHHHHHHHHHHHHH-----------HHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHH
Q psy5931 31 VPIVDCFEKIRQQVK-----------CYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEA 99 (173)
Q Consensus 31 i~v~daF~KlrEq~k-----------c~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA 99 (173)
.+.-|+|.+|||-.. ||+.+ .+|..+.+|-+++-=+|+ +.+..++.-.=|-.+-+-|++.+|
T Consensus 663 ~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~------~qy~~AIqmYe~~lkkf~-~~~~~~vl~~Lara~y~~~~~~ea 735 (1018)
T KOG2002|consen 663 SEARDIFSQVREATSDFEDVWLNLAHCYVEQ------GQYRLAIQMYENCLKKFY-KKNRSEVLHYLARAWYEAGKLQEA 735 (1018)
T ss_pred hHHHHHHHHHHHHHhhCCceeeeHHHHHHHH------HHHHHHHHHHHHHHHHhc-ccCCHHHHHHHHHHHHHhhhHHHH
Confidence 457789999999887 88885 789999999999977777 899999999999999999999999
Q ss_pred HHHHHHHHccchhhHH
Q psy5931 100 NKAFSAAVQMHDVMVK 115 (173)
Q Consensus 100 ~~~F~~Avql~~~~~k 115 (173)
-++--.|..+.|.-+-
T Consensus 736 k~~ll~a~~~~p~~~~ 751 (1018)
T KOG2002|consen 736 KEALLKARHLAPSNTS 751 (1018)
T ss_pred HHHHHHHHHhCCccch
Confidence 9999999888875444
No 170
>KOG0495|consensus
Probab=53.97 E-value=26 Score=34.99 Aligned_cols=68 Identities=18% Similarity=0.274 Sum_probs=56.8
Q ss_pred HHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhc
Q psy5931 58 QLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQF 128 (173)
Q Consensus 58 el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f 128 (173)
...+++.++|.. |..| +..-.||-.+|.+.+++++.|.|-.+|-+-+..||+++-.|..-.+.=++..
T Consensus 666 ~~eeA~rllEe~-lk~f--p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~ 733 (913)
T KOG0495|consen 666 NVEEALRLLEEA-LKSF--PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDG 733 (913)
T ss_pred hHHHHHHHHHHH-HHhC--CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhc
Confidence 356788888554 4444 3456799999999999999999999999999999999999999888877653
No 171
>KOG0550|consensus
Probab=53.93 E-value=48 Score=31.33 Aligned_cols=57 Identities=21% Similarity=0.321 Sum_probs=47.4
Q ss_pred HHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHH
Q psy5931 59 LQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWG 121 (173)
Q Consensus 59 l~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG 121 (173)
|.+||++=.+ +++-.+.+|--+|.+..+||+.+||-.-=..|+.+++++.|+...=|
T Consensus 272 Yteal~idP~------n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra 328 (486)
T KOG0550|consen 272 YTEALNIDPS------NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRA 328 (486)
T ss_pred HHHhhcCCcc------ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHH
Confidence 7777765433 67788999999999999999999999999999999999888775433
No 172
>KOG1174|consensus
Probab=53.91 E-value=1e+02 Score=29.44 Aligned_cols=53 Identities=25% Similarity=0.321 Sum_probs=42.1
Q ss_pred hhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccch
Q psy5931 56 KNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHD 111 (173)
Q Consensus 56 ~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~ 111 (173)
.+++.++|+..+..-= ..+-.-+=|-|||-.|-.+|+.++|--+|.+|..+-|
T Consensus 313 ~K~~~rAL~~~eK~I~---~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap 365 (564)
T KOG1174|consen 313 EKKFERALNFVEKCID---SEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAP 365 (564)
T ss_pred hhhHHHHHHHHHHHhc---cCcccchHHHhccHHHHhccchHHHHHHHHHHHhcch
Confidence 4568888887765432 2344456688999999999999999999999999987
No 173
>KOG1129|consensus
Probab=53.91 E-value=83 Score=29.28 Aligned_cols=103 Identities=18% Similarity=0.270 Sum_probs=70.4
Q ss_pred hHHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHH
Q psy5931 3 IQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEF 82 (173)
Q Consensus 3 ~~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~ 82 (173)
+++|+---..|++.-+.-.|+. .|.+-|..|.|+=| .|.|... ++-..+|.+|.. -||-|.-+ --+
T Consensus 227 ~Q~gkCylrLgm~r~Aekqlqs--sL~q~~~~dTfllL---skvY~ri------dQP~~AL~~~~~-gld~fP~~--VT~ 292 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQS--SLTQFPHPDTFLLL---SKVYQRI------DQPERALLVIGE-GLDSFPFD--VTY 292 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHH--HhhcCCchhHHHHH---HHHHHHh------ccHHHHHHHHhh-hhhcCCch--hhh
Confidence 3556666667788777777776 34456777787755 4556543 445677777754 35555332 223
Q ss_pred HHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHH
Q psy5931 83 YALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWAL 119 (173)
Q Consensus 83 ~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~ 119 (173)
+.=-+-+++.+|+.|+|-+.|.-++..||+.+.+-+.
T Consensus 293 l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAc 329 (478)
T KOG1129|consen 293 LLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIAC 329 (478)
T ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeee
Confidence 4445668999999999999999999999987766543
No 174
>KOG4555|consensus
Probab=53.60 E-value=23 Score=28.87 Aligned_cols=40 Identities=23% Similarity=0.223 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHH
Q psy5931 80 AEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWAL 119 (173)
Q Consensus 80 aE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~ 119 (173)
+.-+-+||..++.-|+.|+|.+-|.+|+-+.|.-+.++-.
T Consensus 43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNN 82 (175)
T KOG4555|consen 43 SRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNN 82 (175)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhcc
Confidence 3456799999999999999999999999999987766643
No 175
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=53.36 E-value=25 Score=24.66 Aligned_cols=35 Identities=20% Similarity=0.127 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchh
Q psy5931 78 MTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDV 112 (173)
Q Consensus 78 qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~ 112 (173)
++|..+--+|+=....|++++|...|..|++....
T Consensus 4 ~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~ 38 (75)
T cd02684 4 EKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVP 38 (75)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 46677777888899999999999999999987554
No 176
>PLN03077 Protein ECB2; Provisional
Probab=53.30 E-value=2.1e+02 Score=27.97 Aligned_cols=108 Identities=19% Similarity=0.190 Sum_probs=67.4
Q ss_pred hHHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHH
Q psy5931 3 IQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEF 82 (173)
Q Consensus 3 ~~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~ 82 (173)
|.+...--+||..+-++..+++|....-.|=...|.-+-. +|-. .+.+.+|+++.+.---+| .-+=..+-
T Consensus 558 n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~---a~~~------~g~v~ea~~~f~~M~~~~-gi~P~~~~ 627 (857)
T PLN03077 558 NILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLC---ACSR------SGMVTQGLEYFHSMEEKY-SITPNLKH 627 (857)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHH---HHhh------cChHHHHHHHHHHHHHHh-CCCCchHH
Confidence 3444555678999999999988766422232334544432 2222 245778888877543111 11223478
Q ss_pred HHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHH
Q psy5931 83 YALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYME 125 (173)
Q Consensus 83 ~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d 125 (173)
|.--...+.+.|+.+||.+.|... .+.|+ + ..|+.++.
T Consensus 628 y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~---~~~~aLl~ 665 (857)
T PLN03077 628 YACVVDLLGRAGKLTEAYNFINKM-PITPD-P---AVWGALLN 665 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-H---HHHHHHHH
Confidence 999999999999999999999874 34554 2 34555554
No 177
>KOG1070|consensus
Probab=52.98 E-value=17 Score=38.81 Aligned_cols=39 Identities=15% Similarity=0.402 Sum_probs=21.2
Q ss_pred HHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhh
Q psy5931 89 LLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQ 127 (173)
Q Consensus 89 fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~ 127 (173)
|+.+-+.+++|.+.|..-+--.-+..+.|..||+|+-+.
T Consensus 1539 iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ 1577 (1710)
T KOG1070|consen 1539 IYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQ 1577 (1710)
T ss_pred HHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcc
Confidence 445555555555555555554445555555555555444
No 178
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=52.77 E-value=72 Score=32.62 Aligned_cols=115 Identities=17% Similarity=0.157 Sum_probs=86.8
Q ss_pred hhHHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHH
Q psy5931 2 IIQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAE 81 (173)
Q Consensus 2 ~~~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE 81 (173)
+..|+.-|--|+-.++-.+.+..|++-++-+..--.+ +.-.+..|+-+ .+.+.+-+++++-+++.. .+..++
T Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~-~~~~~~ 841 (932)
T PRK13184 770 FDLFAIQALLDEEGESIIQLLQLIYDYVSEEERHDHL-LVYEIQAHLWN------RDLKKAYKLLNRYPLDLL-LDEYSE 841 (932)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHhccCChhhhhhh-hHHHHHHHHHh------ccHHHHHHHHHhCChhhh-ccccch
Confidence 4567888888888899999999999876544432333 34448888886 578888899988888776 456789
Q ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhh
Q psy5931 82 FYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQ 127 (173)
Q Consensus 82 ~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~ 127 (173)
+|-|=|--|+--++.+-|+.-|+-.. -+--.|++|. |.+++-+
T Consensus 842 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~ 884 (932)
T PRK13184 842 AFVLYGCYLALTEDREAAKAHFSGCR-EDALFPRSLD--GDIFDYL 884 (932)
T ss_pred HHHHHHHHHHhcCchhHHHHHHhhcc-ccccCcchhh--ccccchh
Confidence 99999999999999999999998776 3335678885 3444444
No 179
>KOG2376|consensus
Probab=51.38 E-value=90 Score=30.67 Aligned_cols=99 Identities=16% Similarity=0.216 Sum_probs=62.7
Q ss_pred CCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHH
Q psy5931 12 HHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLA 91 (173)
Q Consensus 12 h~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~ 91 (173)
.|=++-++..-+||-..- | |-=.-+|-.+-|..|. +.|.++|.+|+.+-. ...-.-||.=|+-..-
T Consensus 25 ~~e~e~a~k~~~Kil~~~--p--dd~~a~~cKvValIq~------~ky~~ALk~ikk~~~----~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 25 NGEYEEAVKTANKILSIV--P--DDEDAIRCKVVALIQL------DKYEDALKLIKKNGA----LLVINSFFFEKAYCEY 90 (652)
T ss_pred chHHHHHHHHHHHHHhcC--C--CcHhhHhhhHhhhhhh------hHHHHHHHHHHhcch----hhhcchhhHHHHHHHH
Confidence 344555556666665541 1 1112356667788884 679999999987663 1223334478999999
Q ss_pred HhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhh
Q psy5931 92 QIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQ 127 (173)
Q Consensus 92 ~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~ 127 (173)
++|..|||++.+..+=..+ .+.--.-|.+|+++
T Consensus 91 rlnk~Dealk~~~~~~~~~---~~ll~L~AQvlYrl 123 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDRLD---DKLLELRAQVLYRL 123 (652)
T ss_pred HcccHHHHHHHHhcccccc---hHHHHHHHHHHHHH
Confidence 9999999999999443333 33444444555544
No 180
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.46 E-value=41 Score=29.41 Aligned_cols=38 Identities=18% Similarity=0.213 Sum_probs=23.0
Q ss_pred chhhH-HHHHHHHHHHHHhCCchHHHHHHHHHHccchhh
Q psy5931 76 KEMTA-EFYALKGMLLAQIGRSAEANKAFSAAVQMHDVM 113 (173)
Q Consensus 76 ~~qka-E~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~ 113 (173)
+..|| |-+.==|+.+.++|+.|+|..+|.+.++-.|.-
T Consensus 210 ~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 210 KSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred CCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 33343 555555666666666666666666666666543
No 181
>KOG1988|consensus
Probab=48.69 E-value=1.3e+02 Score=30.77 Aligned_cols=108 Identities=20% Similarity=0.168 Sum_probs=72.6
Q ss_pred HHHHhCCChHHHHHHHHhhcCCCC-CcHHHHHHHHHHHHH-HHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHH
Q psy5931 7 KIARKHHLTSVCLDSLFRLYTIPS-VPIVDCFEKIRQQVK-CYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYA 84 (173)
Q Consensus 7 ~iARkh~l~~vc~~~L~ki~~lp~-i~v~daF~KlrEq~k-c~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~ 84 (173)
+.|...-++..++.+|.-+-+-.+ ..-|=-|+|+|-++. .++ +.++++|..|.+--.+-|..+++.
T Consensus 603 ~la~~L~~~q~al~sl~a~s~~~~~~~Fq~~~l~lr~~~l~t~~------------~lv~~~~~~~~~l~~aiq~~~~~n 670 (970)
T KOG1988|consen 603 ELAHCLANYQSALASLGAISAPSNPLCFQTEFLKLRTRVLQTVL------------ELVEVLNLLNQSLPPAIQTEEALN 670 (970)
T ss_pred HHHHHHHHHHHHHHhccccCCCCCCceeehHHHHHHHHHHHHHH------------HHHHHhhhhccCCCchhhHHHHhh
Confidence 334333467777888877655332 346668999998865 444 448899998888888889999988
Q ss_pred HHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCC
Q psy5931 85 LKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSP 133 (173)
Q Consensus 85 LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~ 133 (173)
. +..+.++|+-..--+--....-+ + =..|++.++.=|..+++
T Consensus 671 ~-~~~lQrl~~is~ql~k~~ke~~~---~---a~~~~~l~~sSF~Ad~~ 712 (970)
T KOG1988|consen 671 T-CDSLQRLGRISNQLQKLAKEFDM---L---ATCYIDLYDSSFDADSV 712 (970)
T ss_pred h-hHHHHHHHHHHHHHHHHHHHHHH---H---HHHHHHHHhcccccCce
Confidence 8 89999998754322211111111 1 12699999999988864
No 182
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=48.61 E-value=1.1e+02 Score=26.68 Aligned_cols=67 Identities=16% Similarity=0.090 Sum_probs=54.6
Q ss_pred HHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCC
Q psy5931 64 EVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTN 130 (173)
Q Consensus 64 ~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~ 130 (173)
.|...-+...+...+-++...--|+=+-.-|+..-|-+.+..|++.||+...+|..=+.+..++...
T Consensus 19 cvt~~~~~~~~~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~ 85 (250)
T COG3063 19 CVTDPAPSRQTDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGEN 85 (250)
T ss_pred ccCCCCccccccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCh
Confidence 3334444445666777888888888888899999999999999999999999999999998877543
No 183
>KOG1173|consensus
Probab=48.12 E-value=1.4e+02 Score=29.20 Aligned_cols=63 Identities=19% Similarity=0.126 Sum_probs=47.4
Q ss_pred HHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhH
Q psy5931 59 LQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYM 124 (173)
Q Consensus 59 l~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~ 124 (173)
++.+|++|.+.+= .+.--.-++.+=|-..-|+|.++||-..|..|+.+.|..+..-++=|..-
T Consensus 437 f~~~l~~ik~~~~---e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy 499 (611)
T KOG1173|consen 437 FQKALEVIKSVLN---EKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIY 499 (611)
T ss_pred HHHHHHHhhhccc---cccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHH
Confidence 4555666655543 11123345778899999999999999999999999999988888877543
No 184
>KOG2003|consensus
Probab=47.64 E-value=9.5 Score=36.66 Aligned_cols=74 Identities=19% Similarity=0.220 Sum_probs=59.4
Q ss_pred CCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHcc
Q psy5931 30 SVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQM 109 (173)
Q Consensus 30 ~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql 109 (173)
.|.|.....|-||..|..- -|.-+|+.+-+.| ++++-.++..-|.-.-+.|++|+|-.+|.+.+.+
T Consensus 240 kmnigni~~kkr~fskaik---------fyrmaldqvpsin-----k~~rikil~nigvtfiq~gqy~dainsfdh~m~~ 305 (840)
T KOG2003|consen 240 KMNIGNIHFKKREFSKAIK---------FYRMALDQVPSIN-----KDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE 305 (840)
T ss_pred eeeecceeeehhhHHHHHH---------HHHHHHhhccccc-----hhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh
Confidence 4678888889999877531 2334577776664 7888899999999999999999999999999999
Q ss_pred chhhHHHH
Q psy5931 110 HDVMVKAW 117 (173)
Q Consensus 110 ~~~~~kaW 117 (173)
.|++..+.
T Consensus 306 ~pn~~a~~ 313 (840)
T KOG2003|consen 306 APNFIAAL 313 (840)
T ss_pred CccHHhhh
Confidence 99877554
No 185
>KOG0547|consensus
Probab=47.56 E-value=28 Score=33.53 Aligned_cols=59 Identities=19% Similarity=0.177 Sum_probs=47.0
Q ss_pred HHHHHHHHhhhccccCCCchhh----------HHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHH
Q psy5931 58 QLQEGLEVIEHTNLKYLTKEMT----------AEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKA 116 (173)
Q Consensus 58 el~~gL~vi~~tnl~~F~~~qk----------aE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~ka 116 (173)
+|..+-+.....+.+++...+. +|=+-++|.|+.-.|++-+|..-|..++.++|..++.
T Consensus 294 ~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~l 362 (606)
T KOG0547|consen 294 GYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSL 362 (606)
T ss_pred hHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchH
Confidence 3555555555666666665543 7889999999999999999999999999999977663
No 186
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=47.54 E-value=97 Score=23.50 Aligned_cols=43 Identities=16% Similarity=0.242 Sum_probs=31.7
Q ss_pred HHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHH
Q psy5931 61 EGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAV 107 (173)
Q Consensus 61 ~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Av 107 (173)
+-++.+.+.++ -.+-|.||---|.++++.|+.++|++.|..+|
T Consensus 84 ~if~~l~~~~I----G~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 84 EIFKFLYSKGI----GTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHTT----STTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHcCc----cHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 34445555555 46778899999999999999999999887764
No 187
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=47.48 E-value=41 Score=23.71 Aligned_cols=35 Identities=23% Similarity=0.247 Sum_probs=29.2
Q ss_pred hhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccch
Q psy5931 77 EMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHD 111 (173)
Q Consensus 77 ~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~ 111 (173)
.++|--+.-+|.=..+-|++++|...|..|++...
T Consensus 3 ~~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~ 37 (77)
T cd02683 3 ELAAKEVLKRAVELDQEGRFQEALVCYQEGIDLLM 37 (77)
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 56677788889999999999999999999887643
No 188
>KOG2003|consensus
Probab=46.79 E-value=50 Score=31.99 Aligned_cols=51 Identities=12% Similarity=0.018 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcC
Q psy5931 79 TAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFT 129 (173)
Q Consensus 79 kaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~ 129 (173)
.+|.+..-+.+++-|.++..|-+.+.+++++-|+-|..-..-|+..|+-..
T Consensus 557 n~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegd 607 (840)
T KOG2003|consen 557 NAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGD 607 (840)
T ss_pred hHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccc
Confidence 466677778888889999999999999999999999999988988887653
No 189
>KOG2997|consensus
Probab=46.55 E-value=27 Score=31.82 Aligned_cols=43 Identities=19% Similarity=0.081 Sum_probs=37.9
Q ss_pred chhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHH
Q psy5931 76 KEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWA 118 (173)
Q Consensus 76 ~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~ 118 (173)
..-||+.+..||...++=|..-||-..|..|.|++|+.--...
T Consensus 15 ~~kkA~~l~~~av~~Eq~G~l~dai~fYR~AlqI~~diEs~~r 57 (366)
T KOG2997|consen 15 LAKKAIALYEKAVLKEQDGSLYDAINFYRDALQIVPDIESKYR 57 (366)
T ss_pred HHHHHHHHHHHHHHHhhcCcHHHHHHHHHhhhcCCchHHHHHH
Confidence 3568999999999999999999999999999999998654443
No 190
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=45.72 E-value=37 Score=24.06 Aligned_cols=34 Identities=29% Similarity=0.209 Sum_probs=30.9
Q ss_pred hhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccc
Q psy5931 77 EMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMH 110 (173)
Q Consensus 77 ~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~ 110 (173)
+.+|--|..++.=..+-|++++|...|-.|+++.
T Consensus 3 e~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l 36 (76)
T cd02681 3 ERDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLL 36 (76)
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 5678889999999999999999999999999875
No 191
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=44.82 E-value=75 Score=22.47 Aligned_cols=28 Identities=21% Similarity=0.232 Sum_probs=24.9
Q ss_pred HHHHHHHHHhCCchHHHHHHHHHHccch
Q psy5931 84 ALKGMLLAQIGRSAEANKAFSAAVQMHD 111 (173)
Q Consensus 84 ~LKG~fl~~Lg~~deA~~~F~~Avql~~ 111 (173)
-..|.++..+|+.++|-+++..||++--
T Consensus 45 l~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 45 LNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3488999999999999999999998855
No 192
>PF14907 NTP_transf_5: Uncharacterised nucleotidyltransferase
Probab=44.20 E-value=1.1e+02 Score=24.69 Aligned_cols=78 Identities=22% Similarity=0.268 Sum_probs=51.2
Q ss_pred hHHHHHHHhCCChHHHHHHHHhhc--CCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhH
Q psy5931 3 IQFGKIARKHHLTSVCLDSLFRLY--TIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTA 80 (173)
Q Consensus 3 ~~fa~iARkh~l~~vc~~~L~ki~--~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qka 80 (173)
-.+-+.|+.|++...--..|.+.. ..|.=++.+.+....++..-.-..- ..++.+-++.++..++...
T Consensus 6 ~~l~~~a~~h~v~pll~~~l~~~~~~~~~p~~~~~~l~~~~~~~~~rn~~~----~~~~~~i~~~l~~~gI~~~------ 75 (249)
T PF14907_consen 6 EELFRLARRHRVAPLLYRNLKRLGLSDRPPDEVLQRLKSAYRRNALRNLRL----LAELQEILAALNANGIPVI------ 75 (249)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhCccccCCCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHcCCCEE------
Confidence 467889999999999999999986 3322235554444444433222211 3567788888888888543
Q ss_pred HHHHHHHHHHHHh
Q psy5931 81 EFYALKGMLLAQI 93 (173)
Q Consensus 81 E~~~LKG~fl~~L 93 (173)
-|||..++.+
T Consensus 76 ---~lKG~~l~~~ 85 (249)
T PF14907_consen 76 ---LLKGAALAQL 85 (249)
T ss_pred ---EEchHHHHHh
Confidence 5788887763
No 193
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=43.99 E-value=33 Score=18.73 Aligned_cols=23 Identities=17% Similarity=0.094 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhCCchHHHHHHH
Q psy5931 82 FYALKGMLLAQIGRSAEANKAFS 104 (173)
Q Consensus 82 ~~~LKG~fl~~Lg~~deA~~~F~ 104 (173)
....-|..+...|+.++|-..+.
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45567899999999999987653
No 194
>KOG2053|consensus
Probab=43.86 E-value=57 Score=33.27 Aligned_cols=26 Identities=31% Similarity=0.324 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHhCCchHHHHHHHH
Q psy5931 80 AEFYALKGMLLAQIGRSAEANKAFSA 105 (173)
Q Consensus 80 aE~~~LKG~fl~~Lg~~deA~~~F~~ 105 (173)
.=.-.|||..+.++|+.|||.....+
T Consensus 43 ~~a~vLkaLsl~r~gk~~ea~~~Le~ 68 (932)
T KOG2053|consen 43 LYAKVLKALSLFRLGKGDEALKLLEA 68 (932)
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHhh
Confidence 34567888888899988888854443
No 195
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=42.94 E-value=43 Score=22.75 Aligned_cols=35 Identities=17% Similarity=0.104 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchh
Q psy5931 78 MTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDV 112 (173)
Q Consensus 78 qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~ 112 (173)
++|-.+.-+|.=...-|++++|...|..|+.....
T Consensus 6 ~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~ 40 (77)
T smart00745 6 SKAKELISKALKADEAGDYEEALELYKKAIEYLLE 40 (77)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 45556666777788888888888888888766443
No 196
>KOG4234|consensus
Probab=42.78 E-value=19 Score=31.25 Aligned_cols=33 Identities=21% Similarity=0.203 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhCCchHHHHHHHHHHccchhhHH
Q psy5931 83 YALKGMLLAQIGRSAEANKAFSAAVQMHDVMVK 115 (173)
Q Consensus 83 ~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~k 115 (173)
+---|.=+.+-|++++|++.|.-|+.+||..+.
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~ 130 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTST 130 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccH
Confidence 333488899999999999999999999997653
No 197
>KOG3616|consensus
Probab=41.94 E-value=51 Score=33.83 Aligned_cols=54 Identities=26% Similarity=0.375 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHHHHHhCCchHHHHH------HHHHHccch-----hhHHHHHHHHHhHHhhcCCC
Q psy5931 78 MTAEFYALKGMLLAQIGRSAEANKA------FSAAVQMHD-----VMVKAWALWGDYMEAQFTNP 131 (173)
Q Consensus 78 qkaE~~~LKG~fl~~Lg~~deA~~~------F~~Avql~~-----~~~kaW~~WG~~~d~~f~~~ 131 (173)
-|.|+|-=-|.+.+|+.++|.|... |..||++-- ..+|.=..||.+++..-.-+
T Consensus 659 ik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~d 723 (1636)
T KOG3616|consen 659 IKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLD 723 (1636)
T ss_pred HhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHH
Confidence 4678888888999999999999874 567887743 56688888999999885433
No 198
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=41.24 E-value=2.6e+02 Score=24.85 Aligned_cols=95 Identities=12% Similarity=0.037 Sum_probs=65.5
Q ss_pred HHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHH
Q psy5931 5 FGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYA 84 (173)
Q Consensus 5 fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~ 84 (173)
-|.+|-..|-++.+...|.+....+.-. +.-.-++ ++..+++. +++..+++.++.-.= ..|...+.+.
T Consensus 124 aA~aA~~~g~~~~A~~~l~~A~~~~~~~--~~~~~l~-~a~l~l~~------g~~~~Al~~l~~~~~---~~P~~~~al~ 191 (398)
T PRK10747 124 AAEAAQQRGDEARANQHLERAAELADND--QLPVEIT-RVRIQLAR------NENHAARHGVDKLLE---VAPRHPEVLR 191 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCcc--hHHHHHH-HHHHHHHC------CCHHHHHHHHHHHHh---cCCCCHHHHH
Confidence 4777888899999999999876643211 1112222 26666663 456677777766433 2356678888
Q ss_pred HHHHHHHHhCCchHHHHHHHHHHccch
Q psy5931 85 LKGMLLAQIGRSAEANKAFSAAVQMHD 111 (173)
Q Consensus 85 LKG~fl~~Lg~~deA~~~F~~Avql~~ 111 (173)
+-+..+.+.|+.++|-..+........
T Consensus 192 ll~~~~~~~gdw~~a~~~l~~l~k~~~ 218 (398)
T PRK10747 192 LAEQAYIRTGAWSSLLDILPSMAKAHV 218 (398)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHcCC
Confidence 889999999999999988888876544
No 199
>KOG1127|consensus
Probab=40.84 E-value=56 Score=34.07 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=29.1
Q ss_pred CchHHHHHHHHHHccchhhHHHHHHHHHhHHhh
Q psy5931 95 RSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQ 127 (173)
Q Consensus 95 ~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~ 127 (173)
+...|-++|-.|+.++++++++|..-|+|.-..
T Consensus 473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~ 505 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDS 505 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 478899999999999999999999999876444
No 200
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=40.74 E-value=50 Score=22.44 Aligned_cols=35 Identities=14% Similarity=0.029 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchh
Q psy5931 78 MTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDV 112 (173)
Q Consensus 78 qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~ 112 (173)
+++..+.-+|.=..+-|++++|...|..|+.....
T Consensus 4 ~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~ 38 (75)
T cd02656 4 QQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQ 38 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 45666677888888889999999999988876443
No 201
>KOG1070|consensus
Probab=40.50 E-value=2.3e+02 Score=30.91 Aligned_cols=147 Identities=14% Similarity=0.127 Sum_probs=89.5
Q ss_pred HHHHHHHHh--hcCCCCCcHHHHHHHHHHHHH---HHhhhhccCChhH-HHHHHHHhhhccccCCCchhhHHHHHHHHHH
Q psy5931 16 SVCLDSLFR--LYTIPSVPIVDCFEKIRQQVK---CYLQMAALDGKNQ-LQEGLEVIEHTNLKYLTKEMTAEFYALKGML 89 (173)
Q Consensus 16 ~vc~~~L~k--i~~lp~i~v~daF~KlrEq~k---c~l~~~~~~~~~e-l~~gL~vi~~tnl~~F~~~qkaE~~~LKG~f 89 (173)
++|+..||- .|+ |.=++.+.|-..|+.+- -|+.+..-+.+.| ..++-++++-+ +.-|. |.-+.|.+.|.|
T Consensus 1498 NiWiA~lNlEn~yG-~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m-~KKF~--q~~~vW~~y~~f 1573 (1710)
T KOG1070|consen 1498 NIWIAYLNLENAYG-TEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLM-LKKFG--QTRKVWIMYADF 1573 (1710)
T ss_pred HHHHHHHhHHHhhC-cHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHH-HHHhc--chhhHHHHHHHH
Confidence 455555554 344 34457777877777665 3333333333444 66666666543 44565 899999999999
Q ss_pred HHHhCCchHHHHHHHHHHccchh--hHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHH----------H-HHchh
Q psy5931 90 LAQIGRSAEANKAFSAAVQMHDV--MVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCF----------M-HACRH 156 (173)
Q Consensus 90 l~~Lg~~deA~~~F~~Avql~~~--~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~Cy----------L-qA~~~ 156 (173)
|-+-++-+.|......|++--|. ..+-=...+..-.+..+.+ +.-++-+.-++.| + +-+++
T Consensus 1574 Ll~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDae------RGRtlfEgll~ayPKRtDlW~VYid~eik~ 1647 (1710)
T KOG1070|consen 1574 LLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAE------RGRTLFEGLLSAYPKRTDLWSVYIDMEIKH 1647 (1710)
T ss_pred HhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCch------hhHHHHHHHHhhCccchhHHHHHHHHHHcc
Confidence 99999999999999999998776 4444433333322222222 2222223333332 2 23467
Q ss_pred CCCchhhhhHHHHhhc
Q psy5931 157 QKESMSRKYLAKVDYI 172 (173)
Q Consensus 157 ~~~~k~Rk~laRiLWL 172 (173)
......|++.-|++-|
T Consensus 1648 ~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1648 GDIKYVRDLFERVIEL 1663 (1710)
T ss_pred CCHHHHHHHHHHHHhc
Confidence 6777889999888743
No 202
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.28 E-value=57 Score=28.52 Aligned_cols=58 Identities=22% Similarity=0.155 Sum_probs=43.4
Q ss_pred HHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHH
Q psy5931 59 LQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKA 116 (173)
Q Consensus 59 l~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~ka 116 (173)
|.++-+...+.-=.|-...-.++=++.=|.-+...|++++|-+.|...++=.|..+|+
T Consensus 157 y~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KA 214 (262)
T COG1729 157 YAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKA 214 (262)
T ss_pred HHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCC
Confidence 4444444444444566666667777788999999999999999999999988877765
No 203
>KOG3364|consensus
Probab=39.02 E-value=73 Score=25.76 Aligned_cols=72 Identities=13% Similarity=0.056 Sum_probs=55.0
Q ss_pred ChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhh
Q psy5931 55 GKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQ 127 (173)
Q Consensus 55 ~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~ 127 (173)
+.++.++|+.++++.-= .=.|+-+-|-.+.=+.=+.++|+|+.|-+.-.+-+++.|+...+=..--..-|.+
T Consensus 47 ~~~dv~~GI~iLe~l~~-~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ied~i 118 (149)
T KOG3364|consen 47 DTEDVQEGIVILEDLLK-SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKETIEDKI 118 (149)
T ss_pred chHHHHHhHHHHHHHhh-hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Confidence 56779999999987643 2346666666666789999999999999999999999998776655444444444
No 204
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=38.65 E-value=65 Score=22.95 Aligned_cols=38 Identities=21% Similarity=0.340 Sum_probs=31.3
Q ss_pred hhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhH
Q psy5931 77 EMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMV 114 (173)
Q Consensus 77 ~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~ 114 (173)
++.|-.|..++.=+.+-|+++||-..|..|+.+-....
T Consensus 3 ~~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~ 40 (75)
T cd02682 3 EEMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIV 40 (75)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999988877644433
No 205
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=38.21 E-value=78 Score=21.09 Aligned_cols=33 Identities=18% Similarity=0.105 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHhCCchHHHHHHHHHHccch
Q psy5931 79 TAEFYALKGMLLAQIGRSAEANKAFSAAVQMHD 111 (173)
Q Consensus 79 kaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~ 111 (173)
+|-.+.-+|.=..+-|++++|-..|..|+..-.
T Consensus 4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~ 36 (69)
T PF04212_consen 4 KAIELIKKAVEADEAGNYEEALELYKEAIEYLM 36 (69)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 445556667777777777777777777765533
No 206
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=38.06 E-value=77 Score=23.05 Aligned_cols=33 Identities=21% Similarity=0.371 Sum_probs=22.0
Q ss_pred HHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhc
Q psy5931 89 LLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQF 128 (173)
Q Consensus 89 fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f 128 (173)
.+++.-+.++.-.+++.+ ..++.+||+|=|.+=
T Consensus 32 aL~k~~~~~~rf~~lG~l-------~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 32 ALEKITDREDRFRVLGYL-------IQAHMEWGKYREMLA 64 (80)
T ss_pred HHhhcCChHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 455555566666666654 467899999977763
No 207
>PRK11906 transcriptional regulator; Provisional
Probab=36.99 E-value=75 Score=30.00 Aligned_cols=55 Identities=13% Similarity=0.158 Sum_probs=48.5
Q ss_pred hHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhH
Q psy5931 57 NQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMV 114 (173)
Q Consensus 57 ~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~ 114 (173)
.++..|+..++-... -.|.-|-.|...|.++.--|+.++|-.....|++++|.-.
T Consensus 352 ~~~~~a~~~f~rA~~---L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~ 406 (458)
T PRK11906 352 GQAKVSHILFEQAKI---HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRR 406 (458)
T ss_pred cchhhHHHHHHHHhh---cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhh
Confidence 347788888888777 6788899999999999999999999999999999999644
No 208
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=36.04 E-value=51 Score=22.29 Aligned_cols=42 Identities=17% Similarity=0.399 Sum_probs=33.4
Q ss_pred CCCchhhHHHHHHHHHHHHHhC-----CchHHHHHHHHHHccchhhHHHHH
Q psy5931 73 YLTKEMTAEFYALKGMLLAQIG-----RSAEANKAFSAAVQMHDVMVKAWA 118 (173)
Q Consensus 73 ~F~~~qkaE~~~LKG~fl~~Lg-----~~deA~~~F~~Avql~~~~~kaW~ 118 (173)
-|+++|+.++-. +-++.| -.++.-..|+.-+.+.+...|.|.
T Consensus 7 ~Ft~~Q~~~Le~----~fe~~~y~~~~~~~~~r~~la~~lgl~~~vvKVWf 53 (58)
T TIGR01565 7 KFTAEQKEKMRD----FAEKLGWKLKDKRREEVREFCEEIGVTRKVFKVWM 53 (58)
T ss_pred CCCHHHHHHHHH----HHHHcCCCCCCCCHHHHHHHHHHhCCCHHHeeeec
Confidence 478999988765 455666 356678899999999999999994
No 209
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=34.76 E-value=2.1e+02 Score=27.82 Aligned_cols=79 Identities=15% Similarity=0.174 Sum_probs=58.7
Q ss_pred HHHHHHHHHhhhhccCChhH--HHHHHHHhhhccccCCCchhh-HHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHH
Q psy5931 39 KIRQQVKCYLQMAALDGKNQ--LQEGLEVIEHTNLKYLTKEMT-AEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVK 115 (173)
Q Consensus 39 KlrEq~kc~l~~~~~~~~~e--l~~gL~vi~~tnl~~F~~~qk-aE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~k 115 (173)
|+---.|.++.+ +.| +..|--.|+. ||+.+-+ |--..+|+.|+...|++|.|+..|..-+.-|+. .
T Consensus 7 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 75 (578)
T PRK15490 7 KLAALGKTCLTL-----KQEKKLAQAVALIDS----ELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--E 75 (578)
T ss_pred HHHHhhhHHHHH-----HHHhhHHHHHHHHHH----hCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--c
Confidence 455556766665 333 6666668874 5655444 444567999999999999999999999999988 7
Q ss_pred HHHHHHHhHHhhc
Q psy5931 116 AWALWGDYMEAQF 128 (173)
Q Consensus 116 aW~~WG~~~d~~f 128 (173)
+...|+.-+.+..
T Consensus 76 ~~~~~~~~~~~~~ 88 (578)
T PRK15490 76 ARYEYARRLYNTG 88 (578)
T ss_pred hHHHHHHHHHhhh
Confidence 7788888776654
No 210
>PF04994 TfoX_C: TfoX C-terminal domain; InterPro: IPR007077 This domain is found in a number of bacterial proteins including the TfoX gene product of Haemophilus influenzae. TfoX may play a key role in the development of genetic competence by regulating the expression of late competence-specific genes []. This family corresponds to the C-terminal presumed domain of TfoX. The domain is found in association with the N-terminal domain in some, but not all members of this group, suggesting this is an autonomous and functionally unrelated domain. For example it is found associated with Q9JZR1 from SWISSPROT in IPR002125 from INTERPRO.; PDB: 3BQT_A 3MAB_A.
Probab=33.46 E-value=1.3e+02 Score=21.41 Aligned_cols=63 Identities=14% Similarity=0.225 Sum_probs=31.5
Q ss_pred CChHHHHHHHHhhcCCCCCc------HHHHHHHHHHHHH-HHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHH
Q psy5931 13 HLTSVCLDSLFRLYTIPSVP------IVDCFEKIRQQVK-CYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYA 84 (173)
Q Consensus 13 ~l~~vc~~~L~ki~~lp~i~------v~daF~KlrEq~k-c~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~ 84 (173)
|+.-.....|.++ ++.+++ ..+||+||+++.. ..+.+ ==.+..|++ +..-...+++.|.|+..
T Consensus 10 Nig~~~e~~L~~v-GI~t~~~L~~~Ga~~a~~~Lk~~~~~~~~~~-----L~aL~gAi~---g~~~~~L~~~~K~~L~~ 79 (81)
T PF04994_consen 10 NIGPKSERMLAKV-GIHTVEDLRELGAVEAYLRLKASGPSVCLNL-----LYALEGAIQ---GIHWADLPDEEKQELLE 79 (81)
T ss_dssp T--HHHHHHHHHT-T--SHHHHHHHHHHHHHHHHHHH-TT--HHH-----HHHHHHHHC---TS-GGGS-HHHHHHHHH
T ss_pred CCCHHHHHHHHHc-CCCCHHHHHHhCHHHHHHHHHHHCCCCCHHH-----HHHHHHHHc---CCCHHHCCHHHHHHHHh
Confidence 4445555666665 444443 6779999999843 11111 012445544 44444458888888753
No 211
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=33.33 E-value=1.3e+02 Score=30.81 Aligned_cols=80 Identities=11% Similarity=0.071 Sum_probs=58.6
Q ss_pred HHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchh---hHH
Q psy5931 39 KIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDV---MVK 115 (173)
Q Consensus 39 KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~---~~k 115 (173)
-++..+.||-+|. +..++..+-+..-- -++.-++.++.=|-+++.. +.|+|-+.+..||+..-+ ..+
T Consensus 118 Al~~LA~~Ydk~g------~~~ka~~~yer~L~---~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~ 187 (906)
T PRK14720 118 ALRTLAEAYAKLN------ENKKLKGVWERLVK---ADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVG 187 (906)
T ss_pred HHHHHHHHHHHcC------ChHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchH
Confidence 5788999999874 23333333333322 1278889999999999999 999999999999998663 445
Q ss_pred HHHHHHHhHHhhc
Q psy5931 116 AWALWGDYMEAQF 128 (173)
Q Consensus 116 aW~~WG~~~d~~f 128 (173)
.-.-|-.+|+..-
T Consensus 188 ~~e~W~k~~~~~~ 200 (906)
T PRK14720 188 IEEIWSKLVHYNS 200 (906)
T ss_pred HHHHHHHHHhcCc
Confidence 5555999887653
No 212
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=33.23 E-value=4.6e+02 Score=25.42 Aligned_cols=100 Identities=17% Similarity=0.255 Sum_probs=68.7
Q ss_pred HHHHHHHhCCChHHHHHHHHhhcC-CCCCcHHHHHHHHHHH-HHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHH
Q psy5931 4 QFGKIARKHHLTSVCLDSLFRLYT-IPSVPIVDCFEKIRQQ-VKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAE 81 (173)
Q Consensus 4 ~fa~iARkh~l~~vc~~~L~ki~~-lp~i~v~daF~KlrEq-~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE 81 (173)
++|-.|||.|=.+.++.+...+-. .|...++ .|||- +.|++++ +.+.+.=.++..- |+-+-+-.|.
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l----~IrenLie~LLel------q~Yad~q~lL~kY--dDi~lpkSAt 331 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNL----NIRENLIEALLEL------QAYADVQALLAKY--DDISLPKSAT 331 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchh----hHHHHHHHHHHhc------CCHHHHHHHHHHh--ccccCCchHH
Confidence 688999999999999999888864 4544433 36665 3499986 3455555555542 2333456788
Q ss_pred HHHHHHHHHHH-hCCc---------------hHHHHHHHHHHccchhhHH
Q psy5931 82 FYALKGMLLAQ-IGRS---------------AEANKAFSAAVQMHDVMVK 115 (173)
Q Consensus 82 ~~~LKG~fl~~-Lg~~---------------deA~~~F~~Avql~~~~~k 115 (173)
+.+=++++..+ .|+. -.|.++...||...|..||
T Consensus 332 i~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 332 ICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred HHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 88888887755 2221 2367889999999997775
No 213
>KOG1498|consensus
Probab=32.62 E-value=3.2e+02 Score=25.75 Aligned_cols=116 Identities=15% Similarity=0.140 Sum_probs=74.2
Q ss_pred HHHHHHhCCChHHHHHHHHh--hcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHH
Q psy5931 5 FGKIARKHHLTSVCLDSLFR--LYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEF 82 (173)
Q Consensus 5 fa~iARkh~l~~vc~~~L~k--i~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~ 82 (173)
++++=-.+|-.+-|.+.|-. +-|..+|+..|-..=+-||...++- +.++-.+==+--.-|..||.++...++
T Consensus 137 L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~------~~D~vra~i~skKI~~K~F~~~~~~~l 210 (439)
T KOG1498|consen 137 LAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLL------RLDYVRAQIISKKINKKFFEKPDVQEL 210 (439)
T ss_pred HHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHH------hhhHHHHHHHHHHhhHHhcCCccHHHH
Confidence 56666778998889899886 3456689999999999999995554 357777766667788999998764432
Q ss_pred HHHHHHHHHHhCCch----HHHHHHHHHHccchhhHHHHHHHHHhHHhh
Q psy5931 83 YALKGMLLAQIGRSA----EANKAFSAAVQMHDVMVKAWALWGDYMEAQ 127 (173)
Q Consensus 83 ~~LKG~fl~~Lg~~d----eA~~~F~~Avql~~~~~kaW~~WG~~~d~~ 127 (173)
=.-==..+-++|.++ ++-+.|...... |....-=..|+..+.+.
T Consensus 211 KlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t-~~vk~d~~kw~~vL~~i 258 (439)
T KOG1498|consen 211 KLKYYELMIRLGLHDRAYLNVCRSYRAIYDT-GNVKEDPEKWIEVLRSI 258 (439)
T ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHhcc-cccccChhhhhhhhhhh
Confidence 111112334555444 455566554433 22122223377776665
No 214
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=32.57 E-value=15 Score=34.79 Aligned_cols=81 Identities=12% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHH
Q psy5931 42 QQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWG 121 (173)
Q Consensus 42 Eq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG 121 (173)
.-++.+++ .+++..+..+++..+..-.++.|+.+..-|++.+....|+.++|...+.. +.........|..|.
T Consensus 29 ~Aa~a~l~------~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~-~~~~~l~~~~~~~~~ 101 (536)
T PF04348_consen 29 LAARALLQ------EGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNA-QDLWQLPPEQQARYH 101 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHh------CCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhcc-CCcccCCHHHHHHHH
Confidence 44556665 46788888899988877889999999999999999999999999999875 334334445555555
Q ss_pred HhHHhhcC
Q psy5931 122 DYMEAQFT 129 (173)
Q Consensus 122 ~~~d~~f~ 129 (173)
...-..|.
T Consensus 102 ~l~A~a~~ 109 (536)
T PF04348_consen 102 QLRAQAYE 109 (536)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 55444553
No 215
>KOG1585|consensus
Probab=32.44 E-value=2.4e+02 Score=25.25 Aligned_cols=82 Identities=21% Similarity=0.243 Sum_probs=55.6
Q ss_pred hHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhh-hh----------------ccCChhH----HHHHHHHhhhccccC
Q psy5931 15 TSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQ-MA----------------ALDGKNQ----LQEGLEVIEHTNLKY 73 (173)
Q Consensus 15 ~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~-~~----------------~~~~~~e----l~~gL~vi~~tnl~~ 73 (173)
+|.+.-++.++.-+| ||.|-|-| +-|.|. .. .+..|++ |+.|++|+++-.
T Consensus 74 yEqaamLake~~kls--Evvdl~eK----As~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~d--- 144 (308)
T KOG1585|consen 74 YEQAAMLAKELSKLS--EVVDLYEK----ASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDD--- 144 (308)
T ss_pred HHHHHHHHHHHHHhH--HHHHHHHH----HHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccc---
Confidence 456666677776664 55565544 444443 11 1114444 777888877665
Q ss_pred CCchhhHHHHHHHHHHHHHhCCchHHHHHHHHH
Q psy5931 74 LTKEMTAEFYALKGMLLAQIGRSAEANKAFSAA 106 (173)
Q Consensus 74 F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~A 106 (173)
...|-.||+.-=|-+|-++.+++||..+|-.=
T Consensus 145 -r~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe 176 (308)
T KOG1585|consen 145 -RDQMAFELYGKCSRVLVRLEKFTEAATAFLKE 176 (308)
T ss_pred -hHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHh
Confidence 36788899999999999999999998887654
No 216
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=30.77 E-value=1.4e+02 Score=23.72 Aligned_cols=71 Identities=17% Similarity=0.193 Sum_probs=46.5
Q ss_pred HHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHH----HHHhhhhccCChhHHHHHHHHhhhccccCCC
Q psy5931 4 QFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQV----KCYLQMAALDGKNQLQEGLEVIEHTNLKYLT 75 (173)
Q Consensus 4 ~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~----kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~ 75 (173)
....+.-+++-.+-|...|+.+-.+| .|-.++|.|+.-.- -||.+--...+..+...+++++...+...+.
T Consensus 133 N~~~~~i~~~~~~~a~~~l~~l~~l~-~~~~~~~~ki~~~f~~~l~~y~~g~~~~~~~~i~~~i~~l~~lg~~~~~ 207 (220)
T TIGR01716 133 NIAVLLIEKNEFSYAQYFLEKLEKIL-DPEDDLYERILFNFLKGIILYKEGQKESGEEKIEQAIEIFDELGYPTLA 207 (220)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHcCCHHHH
Confidence 34445555556678888999998888 66678888876332 2333211122456799999999988775553
No 217
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=30.56 E-value=1.9e+02 Score=20.05 Aligned_cols=70 Identities=26% Similarity=0.241 Sum_probs=50.4
Q ss_pred hHHHHHHHHhhhccccCCCc--hhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchh-hHHHHHHHHHhHHhhc
Q psy5931 57 NQLQEGLEVIEHTNLKYLTK--EMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDV-MVKAWALWGDYMEAQF 128 (173)
Q Consensus 57 ~el~~gL~vi~~tnl~~F~~--~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~-~~kaW~~WG~~~d~~f 128 (173)
.++..+++..+.. +. ..+ ...+..+...+..+...|+.++|...+..++...+. ....+...+.......
T Consensus 144 ~~~~~a~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 144 GDYEEALELYEKA-LE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred CCHHHHHHHHHHH-Hh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 4566666666666 44 444 356666666677788888889999999999888888 6777777777666554
No 218
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=29.56 E-value=1.2e+02 Score=18.26 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=18.8
Q ss_pred HHHHHHhCCchHHHHHHH--HHHccch
Q psy5931 87 GMLLAQIGRSAEANKAFS--AAVQMHD 111 (173)
Q Consensus 87 G~fl~~Lg~~deA~~~F~--~Avql~~ 111 (173)
|-.+-..|++++|.+.|+ -+..+++
T Consensus 8 a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 8 AYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 777888999999999955 6666654
No 219
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=29.52 E-value=18 Score=34.24 Aligned_cols=98 Identities=14% Similarity=0.069 Sum_probs=0.0
Q ss_pred HHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHH
Q psy5931 4 QFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFY 83 (173)
Q Consensus 4 ~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~ 83 (173)
.-++..-..|=.+.+...|++|..-+--+.+-+-.. --.+++.+. .++..++++.++..+..-.++++...++
T Consensus 29 ~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~-Ll~A~lal~------~~~~~~Al~~L~~~~~~~l~~~~~~~~~ 101 (536)
T PF04348_consen 29 LAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQ-LLRARLALA------QGDPEQALSLLNAQDLWQLPPEQQARYH 101 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHH-HHHHHHHHh------cCCHHHHHHHhccCCcccCCHHHHHHHH
Confidence 345666677888889999998873221122222222 223455554 4678899999998888888999999999
Q ss_pred HHHHHHHHHhCCchHHHHHHHHHHc
Q psy5931 84 ALKGMLLAQIGRSAEANKAFSAAVQ 108 (173)
Q Consensus 84 ~LKG~fl~~Lg~~deA~~~F~~Avq 108 (173)
.+++..+...|+.-+|-+.+...-.
T Consensus 102 ~l~A~a~~~~~~~l~Aa~~~i~l~~ 126 (536)
T PF04348_consen 102 QLRAQAYEQQGDPLAAARERIALDP 126 (536)
T ss_dssp -------------------------
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 9999999999998887776655433
No 220
>KOG2053|consensus
Probab=29.49 E-value=4.7e+02 Score=27.06 Aligned_cols=99 Identities=16% Similarity=0.119 Sum_probs=62.0
Q ss_pred HHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHH--HHhHHhhc---------
Q psy5931 60 QEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALW--GDYMEAQF--------- 128 (173)
Q Consensus 60 ~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~W--G~~~d~~f--------- 128 (173)
.+++..++..-.-+=+++-.-+++. .++-.+|+.|+|-..|..|+|.+|+ -+.-..| ++.=+..|
T Consensus 60 ~ea~~~Le~~~~~~~~D~~tLq~l~---~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~ 135 (932)
T KOG2053|consen 60 DEALKLLEALYGLKGTDDLTLQFLQ---NVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQ 135 (932)
T ss_pred hhHHHHHhhhccCCCCchHHHHHHH---HHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444443333444444443 6888999999999999999999998 4444443 11112222
Q ss_pred --CCCCCCCCCchhhhHHHHHHHHHHHchhCCCchhhhhHH
Q psy5931 129 --TNPSPPGSAPNMVLGVFAVTCFMHACRHQKESMSRKYLA 167 (173)
Q Consensus 129 --~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~~~k~Rk~la 167 (173)
+.-| +..-+.=++++=++|++.-.++...+.+++
T Consensus 136 LyK~~p-----k~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 136 LYKNFP-----KRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred HHHhCC-----cccchHHHHHHHHHHhccCCcccccchhHH
Confidence 2222 334566688999999999888877765554
No 221
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=29.48 E-value=68 Score=28.23 Aligned_cols=41 Identities=22% Similarity=0.314 Sum_probs=36.2
Q ss_pred hhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHH
Q psy5931 77 EMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAW 117 (173)
Q Consensus 77 ~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW 117 (173)
|--++.|..=|..+-.-|++|.|..+|.+-+.+||+.--+-
T Consensus 96 P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~ 136 (297)
T COG4785 96 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAH 136 (297)
T ss_pred CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHH
Confidence 55689999999999999999999999999999999755443
No 222
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=29.42 E-value=2.4e+02 Score=24.15 Aligned_cols=85 Identities=12% Similarity=0.092 Sum_probs=50.0
Q ss_pred HHHHHHHhhhccccCC-CchhhHHHHHHHHHHHHHhCC----------chHHHHHHHHHHcc-----chhhH---HHHHH
Q psy5931 59 LQEGLEVIEHTNLKYL-TKEMTAEFYALKGMLLAQIGR----------SAEANKAFSAAVQM-----HDVMV---KAWAL 119 (173)
Q Consensus 59 l~~gL~vi~~tnl~~F-~~~qkaE~~~LKG~fl~~Lg~----------~deA~~~F~~Avql-----~~~~~---kaW~~ 119 (173)
-.+.|++|++.-|..= +++-+.=++-+||.+.--+-. .+.|.++|..|..+ .|+.| ..=..
T Consensus 96 C~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN 175 (244)
T smart00101 96 CDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIALAELPPTHPIRLGLALN 175 (244)
T ss_pred HHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHH
Confidence 5578899988877432 223333334456666544421 45799999998764 45544 44566
Q ss_pred HHHhHHhhcCCCCCCCCCchhhhHHHHHH
Q psy5931 120 WGDYMEAQFTNPSPPGSAPNMVLGVFAVT 148 (173)
Q Consensus 120 WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~ 148 (173)
+.-|+........ +...+|.+|+.
T Consensus 176 ~SVF~yEI~~~~~-----~A~~lAk~afd 199 (244)
T smart00101 176 FSVFYYEILNSPD-----RACNLAKQAFD 199 (244)
T ss_pred HHHHHHHHcCCHH-----HHHHHHHHHHH
Confidence 7777666644332 45556555544
No 223
>KOG2047|consensus
Probab=28.91 E-value=85 Score=31.42 Aligned_cols=43 Identities=16% Similarity=0.375 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHccch----hhHHHHHHHHHh
Q psy5931 81 EFYALKGMLLAQIGRSAEANKAFSAAVQMHD----VMVKAWALWGDY 123 (173)
Q Consensus 81 E~~~LKG~fl~~Lg~~deA~~~F~~Avql~~----~~~kaW~~WG~~ 123 (173)
.++-==|.|+..-|+.|+|-..|.+|++..- .++..|..||..
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waem 434 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEM 434 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHH
Confidence 3555568899999999999999999998753 457899999954
No 224
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=28.73 E-value=1.5e+02 Score=25.19 Aligned_cols=114 Identities=11% Similarity=0.107 Sum_probs=67.1
Q ss_pred hhHHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHH
Q psy5931 2 IIQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAE 81 (173)
Q Consensus 2 ~~~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE 81 (173)
.|++.+.+|+.+=.+.+.....+.-.-+.+ -.+.|+ ..|.-.+... ++...|..|.|..- ..|.. ..+
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~-~~~vy~---~~A~~E~~~~-----~d~~~A~~Ife~gl-k~f~~--~~~ 71 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRC-TYHVYV---AYALMEYYCN-----KDPKRARKIFERGL-KKFPS--DPD 71 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS--THHHH---HHHHHHHHTC-----S-HHHHHHHHHHHH-HHHTT---HH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCC-CHHHHH---HHHHHHHHhC-----CCHHHHHHHHHHHH-HHCCC--CHH
Confidence 356777777765466666666665433322 223333 2233333321 22334444444432 23433 356
Q ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHccchhhH---HHHHHHHHhHHhh
Q psy5931 82 FYALKGMLLAQIGRSAEANKAFSAAVQMHDVMV---KAWALWGDYMEAQ 127 (173)
Q Consensus 82 ~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~---kaW~~WG~~~d~~ 127 (173)
|+..=..|+.++|+.++|-..|..+++.-+... +.|..|-.|=.+.
T Consensus 72 ~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~ 120 (280)
T PF05843_consen 72 FWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKY 120 (280)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHc
Confidence 666666899999999999999999999866443 7899998884444
No 225
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=27.79 E-value=3.3e+02 Score=23.51 Aligned_cols=68 Identities=21% Similarity=0.145 Sum_probs=52.4
Q ss_pred hhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhc
Q psy5931 56 KNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQF 128 (173)
Q Consensus 56 ~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f 128 (173)
+.+-..-||-+-.+| -.|..+.-.-+ =|-.+.-.|++++|..+|..|+...|. +.+=.-+|.++-++.
T Consensus 140 ~A~a~~tLe~l~e~~-pa~r~pd~~Ll---~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qg 207 (251)
T COG4700 140 FAAAQQTLEDLMEYN-PAFRSPDGHLL---FARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQG 207 (251)
T ss_pred HHHHHHHHHHHhhcC-CccCCCCchHH---HHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhc
Confidence 455666788888888 45555544443 467899999999999999999999886 677777888888776
No 226
>PRK15331 chaperone protein SicA; Provisional
Probab=27.47 E-value=53 Score=26.83 Aligned_cols=64 Identities=9% Similarity=0.017 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchh
Q psy5931 80 AEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRH 156 (173)
Q Consensus 80 aE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~ 156 (173)
.+++-==|.....+|++++|-..|+.|.-++++-|..-..=|.-.-.+ .=..+|..||-.++..
T Consensus 71 ~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l-------------~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 71 PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLM-------------RKAAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHh-------------CCHHHHHHHHHHHHhC
Confidence 445656688899999999999999999999887666533222221111 1245788888888864
No 227
>PRK04841 transcriptional regulator MalT; Provisional
Probab=26.42 E-value=6e+02 Score=24.61 Aligned_cols=48 Identities=10% Similarity=0.006 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHccchh------hHHHHHHHHHhHHhh
Q psy5931 80 AEFYALKGMLLAQIGRSAEANKAFSAAVQMHDV------MVKAWALWGDYMEAQ 127 (173)
Q Consensus 80 aE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~------~~kaW~~WG~~~d~~ 127 (173)
.+.....|..+...|++++|...|..|+..... .+++....|..+...
T Consensus 691 ~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~ 744 (903)
T PRK04841 691 QGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQ 744 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHc
Confidence 344678899999999999999999999887443 334555556555544
No 228
>KOG2300|consensus
Probab=25.45 E-value=4.1e+02 Score=25.99 Aligned_cols=72 Identities=17% Similarity=0.312 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccc-cCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccch
Q psy5931 36 CFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNL-KYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHD 111 (173)
Q Consensus 36 aF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl-~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~ 111 (173)
||..+-- |--|+.. .+..++.+.||.|+.-|= .+=+..-++-+|...|.|..+-|+..||-..-..-+++..
T Consensus 404 a~~nlnl-Ai~YL~~---~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkman 476 (629)
T KOG2300|consen 404 AFCNLNL-AISYLRI---GDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMAN 476 (629)
T ss_pred HHHHHhH-HHHHHHh---ccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc
Confidence 5554443 3344442 133459999999998863 3444566889999999999999999999988888888764
No 229
>PHA00099 minor capsid protein
Probab=25.39 E-value=1.1e+02 Score=24.39 Aligned_cols=41 Identities=10% Similarity=0.298 Sum_probs=28.5
Q ss_pred HHHHHHhCCChHHH------HHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhh
Q psy5931 5 FGKIARKHHLTSVC------LDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQM 50 (173)
Q Consensus 5 fa~iARkh~l~~vc------~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~ 50 (173)
+-|++|+++.+.+| .+.|+-+ |+++|+|..|=-.++=.+.+
T Consensus 44 l~h~~rRq~~ygdc~sp~D~qeAl~~V-----~~~qeaFdsLPA~iR~~F~N 90 (147)
T PHA00099 44 LEHVERRQPRYGDCMSPMDYQEALNVV-----IEAQEAFDSLPAKIRERFGN 90 (147)
T ss_pred hhhhhhhCCccccCCCchhHHHHHHHH-----HHHHHHHHhhhHHHHHHhCC
Confidence 45789999999888 3444444 77888888766666544543
No 230
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=25.13 E-value=1.1e+02 Score=28.25 Aligned_cols=51 Identities=22% Similarity=0.279 Sum_probs=38.6
Q ss_pred hHHHHHHHHhhhccccCCC------chhhHHHHHHHHHHHHHhCCchHHHHHHHHHHc
Q psy5931 57 NQLQEGLEVIEHTNLKYLT------KEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQ 108 (173)
Q Consensus 57 ~el~~gL~vi~~tnl~~F~------~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avq 108 (173)
.+|..||.++++..++... +-+.+ .|+-=|.-+-=|+|+.||.++|++.+.
T Consensus 136 GDY~~Alk~l~~idl~~~~l~~~V~~~~is-~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 136 GDYYQALKVLENIDLNKKGLYTKVPACHIS-TYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred cCHHHHHHHhhccCcccchhhccCcchhee-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3799999999999986442 23333 344568888889999999999988753
No 231
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=24.98 E-value=1.5e+02 Score=23.43 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHhCCchHHHHHHHHHHccch
Q psy5931 79 TAEFYALKGMLLAQIGRSAEANKAFSAAVQMHD 111 (173)
Q Consensus 79 kaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~ 111 (173)
.+.++.--+..+...|+.|||.+....+-.+.|
T Consensus 143 ~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 143 DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 456677779999999999999999999999999
No 232
>KOG1128|consensus
Probab=24.91 E-value=3.7e+02 Score=27.21 Aligned_cols=42 Identities=21% Similarity=0.235 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHHHHHHH
Q psy5931 81 EFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGD 122 (173)
Q Consensus 81 E~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~ 122 (173)
+-|.-.|-.--+|++.+.|-++|-.+|+++|....+|-.-..
T Consensus 520 ~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ 561 (777)
T KOG1128|consen 520 GTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLST 561 (777)
T ss_pred hHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhH
Confidence 456678888899999999999999999999999999865443
No 233
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=24.58 E-value=6.2e+02 Score=24.11 Aligned_cols=94 Identities=16% Similarity=0.062 Sum_probs=54.0
Q ss_pred hHHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHH
Q psy5931 3 IQFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEF 82 (173)
Q Consensus 3 ~~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~ 82 (173)
|.+...--+||..+-++..+.+|....-.|-...|.-+- .+|-. ...+.+|+++.+..--++ .-.-..+-
T Consensus 395 n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll---~a~~~------~g~~~~a~~~f~~m~~~~-g~~p~~~~ 464 (697)
T PLN03081 395 NALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVL---SACRY------SGLSEQGWEIFQSMSENH-RIKPRAMH 464 (697)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHH---HHHhc------CCcHHHHHHHHHHHHHhc-CCCCCccc
Confidence 445555566777777777777765543333333344332 22222 234667777766543211 11123355
Q ss_pred HHHHHHHHHHhCCchHHHHHHHHH
Q psy5931 83 YALKGMLLAQIGRSAEANKAFSAA 106 (173)
Q Consensus 83 ~~LKG~fl~~Lg~~deA~~~F~~A 106 (173)
|..=...+.+.|+.|||.+.|...
T Consensus 465 y~~li~~l~r~G~~~eA~~~~~~~ 488 (697)
T PLN03081 465 YACMIELLGREGLLDEAYAMIRRA 488 (697)
T ss_pred hHhHHHHHHhcCCHHHHHHHHHHC
Confidence 777777888999999999888764
No 234
>PF12854 PPR_1: PPR repeat
Probab=23.54 E-value=76 Score=18.41 Aligned_cols=17 Identities=29% Similarity=0.339 Sum_probs=14.0
Q ss_pred HHHHhCCchHHHHHHHH
Q psy5931 89 LLAQIGRSAEANKAFSA 105 (173)
Q Consensus 89 fl~~Lg~~deA~~~F~~ 105 (173)
-+.+.|+.|+|-+.|..
T Consensus 16 ~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 16 GYCKAGRVDEAFELFDE 32 (34)
T ss_pred HHHHCCCHHHHHHHHHh
Confidence 36788999999998864
No 235
>PF14361 RsbRD_N: RsbT co-antagonist protein rsbRD N-terminal domain
Probab=23.47 E-value=2.9e+02 Score=19.93 Aligned_cols=60 Identities=28% Similarity=0.381 Sum_probs=40.4
Q ss_pred cHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccc-cCCCchhhH-HHHHHHHHHHHHhCC
Q psy5931 32 PIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNL-KYLTKEMTA-EFYALKGMLLAQIGR 95 (173)
Q Consensus 32 ~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl-~~F~~~qka-E~~~LKG~fl~~Lg~ 95 (173)
||-+++.+.-+.+ +.... .+..++.+.|+-|....- .-|+|.+.+ .+|.||..+...|++
T Consensus 43 ~v~~~l~~~l~~~---~d~~~-~~~~~l~~~L~~lsr~RA~Qgftpseta~fvf~LK~~l~~~l~~ 104 (105)
T PF14361_consen 43 PVLDALAAALESG---LDLAA-PEWEELREALEELSRIRAVQGFTPSETASFVFALKRPLFERLQR 104 (105)
T ss_pred HHHHHHHHHHHHh---hhccc-cchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 4666666666666 22211 123668888877766654 789998775 568899999988764
No 236
>KOG0307|consensus
Probab=23.13 E-value=36 Score=35.12 Aligned_cols=87 Identities=20% Similarity=0.269 Sum_probs=49.0
Q ss_pred HHHHHhhhccccCCCchhhHHHHHHH-HHHHHHhCCc-hHHH-----HHHHHHHccchhhHHHHHHHHHhHHhhcCCCCC
Q psy5931 61 EGLEVIEHTNLKYLTKEMTAEFYALK-GMLLAQIGRS-AEAN-----KAFSAAVQMHDVMVKAWALWGDYMEAQFTNPSP 133 (173)
Q Consensus 61 ~gL~vi~~tnl~~F~~~qkaE~~~LK-G~fl~~Lg~~-deA~-----~~F~~Avql~~~~~kaW~~WG~~~d~~f~~~~~ 133 (173)
.|-|..++|.-+||.+.. +++=+|- +|....+-++ |... +++.....+-++ .+|..+||.+.....-
T Consensus 526 gg~el~~~t~~~Y~~k~~-~k~s~li~a~v~~d~~~~ve~~~~k~Wke~la~i~t~~~~-----~~~~elc~~Lg~rl~~ 599 (1049)
T KOG0307|consen 526 GGTELLESTRDKYLAKSN-SKLSRLIYAMVNRDLDDYVETCEVKQWKETLAAICTYAQT-----DEFSELCDMLGDRLEN 599 (1049)
T ss_pred CCHHHHHHHHHHHHHHhC-ChHHHHHHHHHhhhHHHHHhhcchhhHHHHHHHHHHhcch-----hhHHHHHHHHHHHHhh
Confidence 345777888888885544 4433332 2322223322 2121 223333333223 7899999999875420
Q ss_pred CCCCchhhhHHHHHHHHHHHchhCC
Q psy5931 134 PGSAPNMVLGVFAVTCFMHACRHQK 158 (173)
Q Consensus 134 ~~~~~~~~~~~~Ai~CyLqA~~~~~ 158 (173)
+.+ +...|+.||+-|-..++
T Consensus 600 ---~g~--~~~~a~lcYi~agsv~k 619 (1049)
T KOG0307|consen 600 ---AGD--LTSAAILCYICAGSVDK 619 (1049)
T ss_pred ---ccc--hhhhhhHHhhhccChhh
Confidence 011 77899999999887654
No 237
>KOG1129|consensus
Probab=22.74 E-value=2.2e+02 Score=26.56 Aligned_cols=100 Identities=16% Similarity=0.114 Sum_probs=70.3
Q ss_pred CChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhh-ccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHH
Q psy5931 13 HLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMA-ALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLA 91 (173)
Q Consensus 13 ~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~-~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~ 91 (173)
|-||.++..-.||..+. +---|.|..| ..|++--- -+..-.-++.+|.... .++|+|.+++.-|.+.-
T Consensus 338 ~~PE~AlryYRRiLqmG-~~speLf~Ni---gLCC~yaqQ~D~~L~sf~RAlstat-------~~~~aaDvWYNlg~vaV 406 (478)
T KOG1129|consen 338 NNPEMALRYYRRILQMG-AQSPELFCNI---GLCCLYAQQIDLVLPSFQRALSTAT-------QPGQAADVWYNLGFVAV 406 (478)
T ss_pred CChHHHHHHHHHHHHhc-CCChHHHhhH---HHHHHhhcchhhhHHHHHHHHhhcc-------CcchhhhhhhccceeEE
Confidence 55777777777776663 4445677766 66665410 0000112444444332 48999999999999999
Q ss_pred HhCCchHHHHHHHHHHccchhhHHHHHHHHHh
Q psy5931 92 QIGRSAEANKAFSAAVQMHDVMVKAWALWGDY 123 (173)
Q Consensus 92 ~Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~ 123 (173)
-.|+..-|.+.|.-|+.-+++.+.+.-.-|-.
T Consensus 407 ~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL 438 (478)
T KOG1129|consen 407 TIGDFNLAKRCFRLALTSDAQHGEALNNLAVL 438 (478)
T ss_pred eccchHHHHHHHHHHhccCcchHHHHHhHHHH
Confidence 99999999999999999999999888655544
No 238
>cd08767 Cdt1_c The C-terminal fold of replication licensing factor Cdt1 is essential for Cdt1 activity and directly interacts with MCM2-7 helicase. Cdt1 is a replication licensing factor in eukaryotes that recruits the Minichromosome Maintenance Complex (MCM2-7) to the Origin Recognition Complex (ORC). The Cdt1 protein is divided into three regions based on sequence comparison and biochemical analyses: the N-terminal region (Cdt1_n) binds DNA in a sequence-, strand-, and conformation-independent manner; the middle winged helix fold (Cdt1_m) binds geminin to inhibit both binding of the MCM complex to origins of replication and DNA; and the C-terminal region (Cdt1_c) is essential for Cdt1 activity and directly interacts with the MCM2-7 helicase. Precise duplication of chromosomal DNA is required for genomic stability during replication. Assembly of replication factors to start DNA replication in eukaryotes must occur only once per cell cycle. To form a pre-replicative complex on replicat
Probab=22.53 E-value=1.4e+02 Score=22.77 Aligned_cols=57 Identities=12% Similarity=0.262 Sum_probs=40.9
Q ss_pred HHHHHhCCChHHHHHHHHhhcC---CCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhc
Q psy5931 6 GKIARKHHLTSVCLDSLFRLYT---IPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHT 69 (173)
Q Consensus 6 a~iARkh~l~~vc~~~L~ki~~---lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~t 69 (173)
.+-+..++||+++ +.+-.++. =+.+|..+++.||.. .|... .++.|..+.|.++...
T Consensus 35 kr~~~~~rLP~la-~~v~~if~s~~k~~l~~e~l~~kl~~---S~~~~---~s~~E~E~~l~LL~el 94 (126)
T cd08767 35 KRRRMYARLPELA-RILRNIFVSEKKTVLPLEELVYKLQA---SYPSI---LSRGEVEEHLRLLAEL 94 (126)
T ss_pred HHHHHHHhHHHHH-HHHHHHHHhcccccccHHHHHHHHHH---hCCCC---CCHHHHHHHHHHHHHh
Confidence 3445667899988 66666554 346899999999976 44332 3588999999999854
No 239
>KOG4648|consensus
Probab=22.37 E-value=2.6e+02 Score=26.28 Aligned_cols=86 Identities=17% Similarity=0.298 Sum_probs=56.9
Q ss_pred CCCCCcHHHHHHH----HHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHH
Q psy5931 27 TIPSVPIVDCFEK----IRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKA 102 (173)
Q Consensus 27 ~lp~i~v~daF~K----lrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~ 102 (173)
+||.-+|.|-.++ |.|+.--|+. ...|.|+++-- ++.++ -.+..+-.++.|++-+.++.++--|..-
T Consensus 83 dL~vd~I~~~LL~~~SEiKE~GN~yFK------QgKy~EAIDCY-s~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~D 153 (536)
T KOG4648|consen 83 DLPVDPIAQQLLKKASEIKERGNTYFK------QGKYEEAIDCY-STAIA--VYPHNPVYHINRALAYLKQKSFAQAEED 153 (536)
T ss_pred cCCccHHHHHHHHhhHHHHHhhhhhhh------ccchhHHHHHh-hhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHh
Confidence 5665556555443 6777777776 45677777743 33332 2355667777777777777777777777
Q ss_pred HHHHHccchhhHHHHHHHH
Q psy5931 103 FSAAVQMHDVMVKAWALWG 121 (173)
Q Consensus 103 F~~Avql~~~~~kaW~~WG 121 (173)
-..||.+++.+.||+..-|
T Consensus 154 C~~AiaLd~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 154 CEAAIALDKLYVKAYSRRM 172 (536)
T ss_pred HHHHHHhhHHHHHHHHHHH
Confidence 7777777777777776444
No 240
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=22.04 E-value=5.1e+02 Score=23.97 Aligned_cols=48 Identities=29% Similarity=0.382 Sum_probs=36.7
Q ss_pred HHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHcc
Q psy5931 59 LQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQM 109 (173)
Q Consensus 59 l~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql 109 (173)
+..+-++++...-.| |+-+-|...+|-++..-|+.|+|.+.|..|+..
T Consensus 249 ~~~a~~lL~~~~~~y---P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~ 296 (468)
T PF10300_consen 249 LEEAEELLEEMLKRY---PNSALFLFFEGRLERLKGNLEEAIESFERAIES 296 (468)
T ss_pred HHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccc
Confidence 555555555444333 467888999999999999999999999998843
No 241
>KOG4555|consensus
Probab=22.01 E-value=1.4e+02 Score=24.42 Aligned_cols=63 Identities=17% Similarity=0.327 Sum_probs=42.9
Q ss_pred HHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHccchhhHHHH----HHHHHhHHhh
Q psy5931 59 LQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAW----ALWGDYMEAQ 127 (173)
Q Consensus 59 l~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~~~~kaW----~~WG~~~d~~ 127 (173)
|+++|++-+.- ..-.-.-|--||.+.-.+|+-|.|-.-|..|.++--.+++-= --++..|.+|
T Consensus 100 Ln~AleLag~~------trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FAr~QLV~lNPYAAlCN~M 166 (175)
T KOG4555|consen 100 LNKALELAGDQ------TRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFAREQLVELNPYAALCNQM 166 (175)
T ss_pred HHHHHHhcCcc------chHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHHHHHHHhcChHHHHHHHH
Confidence 55555554432 333445688899999999999999999999999966655421 1244455554
No 242
>KOG3783|consensus
Probab=21.91 E-value=2.8e+02 Score=26.92 Aligned_cols=51 Identities=29% Similarity=0.441 Sum_probs=39.7
Q ss_pred ChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHH
Q psy5931 55 GKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAV 107 (173)
Q Consensus 55 ~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Av 107 (173)
+++++....-..++-+++ ..++----+-|||.++-.||+.+.|-+.|.-.+
T Consensus 426 s~~~l~k~~~~~~~~~~~--d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~ 476 (546)
T KOG3783|consen 426 SKNELEKMRAELENPKID--DSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQV 476 (546)
T ss_pred ChhhHHHHHHHHhccCCC--CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 566666555666666666 555555567899999999999999999998877
No 243
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=21.75 E-value=3.3e+02 Score=19.95 Aligned_cols=91 Identities=18% Similarity=0.186 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHhhhhccC-ChhHHHHHHHHhhhccccCCCc------------hhhHHHHHHHHHHHHHhCCchHHHH
Q psy5931 35 DCFEKIRQQVKCYLQMAALD-GKNQLQEGLEVIEHTNLKYLTK------------EMTAEFYALKGMLLAQIGRSAEANK 101 (173)
Q Consensus 35 daF~KlrEq~kc~l~~~~~~-~~~el~~gL~vi~~tnl~~F~~------------~qkaE~~~LKG~fl~~Lg~~deA~~ 101 (173)
+-|..+.+++.-..+-.... .-..+.+++++-...=+..+.. ++......--+..+...|++++|..
T Consensus 4 ~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~ 83 (146)
T PF03704_consen 4 DRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALR 83 (146)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH
Confidence 45666666554333211100 1122666777666655544333 2223334444556667899999999
Q ss_pred HHHHHHccchhhHHHHHHHHHhHH
Q psy5931 102 AFSAAVQMHDVMVKAWALWGDYME 125 (173)
Q Consensus 102 ~F~~Avql~~~~~kaW~~WG~~~d 125 (173)
....++.++|..-.+|..=-..+.
T Consensus 84 ~~~~~l~~dP~~E~~~~~lm~~~~ 107 (146)
T PF03704_consen 84 LLQRALALDPYDEEAYRLLMRALA 107 (146)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHH
Confidence 999999999988888754433333
No 244
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=21.70 E-value=2.5e+02 Score=19.75 Aligned_cols=69 Identities=20% Similarity=0.100 Sum_probs=41.7
Q ss_pred HHhCCchHH----HHHHHHHHccchhh-----HHHHHHHHHhHHhhcCCCCCCCCCchhhhHHHHHHHHHHHchhCCCch
Q psy5931 91 AQIGRSAEA----NKAFSAAVQMHDVM-----VKAWALWGDYMEAQFTNPSPPGSAPNMVLGVFAVTCFMHACRHQKESM 161 (173)
Q Consensus 91 ~~Lg~~deA----~~~F~~Avql~~~~-----~kaW~~WG~~~d~~f~~~~~~~~~~~~~~~~~Ai~CyLqA~~~~~~~k 161 (173)
-+.|++.+| .+.|..+.+-.... .-++..=|.....+ .+ -+.|+.++-+|++.-.+..
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~--G~-----------~~~A~~~l~eAi~~Are~~ 75 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRF--GH-----------YEEALQALEEAIRLARENG 75 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHh--CC-----------HHHHHHHHHHHHHHHHHHC
Confidence 456777777 66666665554432 33333333322222 11 2568888889998877777
Q ss_pred hhhhHHHHhhc
Q psy5931 162 SRKYLAKVDYI 172 (173)
Q Consensus 162 ~Rk~laRiLWL 172 (173)
-+.-|+-++++
T Consensus 76 D~~~l~~al~~ 86 (94)
T PF12862_consen 76 DRRCLAYALSW 86 (94)
T ss_pred CHHHHHHHHHH
Confidence 78888877654
No 245
>KOG1127|consensus
Probab=21.63 E-value=4.2e+02 Score=28.05 Aligned_cols=67 Identities=19% Similarity=0.292 Sum_probs=50.7
Q ss_pred hHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCC-chHHHHHHHHHHccchhhHHHHHHHHHhHHh
Q psy5931 57 NQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGR-SAEANKAFSAAVQMHDVMVKAWALWGDYMEA 126 (173)
Q Consensus 57 ~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~-~deA~~~F~~Avql~~~~~kaW~~WG~~~d~ 126 (173)
+||.++|+....+-= .=...-.|-+| =|.-+..+|+ .|+|-..|-.|..++|+-.=||---|++.++
T Consensus 16 k~YeealEqskkvLk-~dpdNYnA~vF--LGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nLye~ 83 (1238)
T KOG1127|consen 16 KEYEEALEQSKKVLK-EDPDNYNAQVF--LGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYER 83 (1238)
T ss_pred ccHHHHHHHHHHHHh-cCCCcchhhhH--HHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHHHc
Confidence 578999988765422 11222234444 4889999999 9999999999999999999999877777666
No 246
>KOG3081|consensus
Probab=21.55 E-value=6e+02 Score=22.82 Aligned_cols=42 Identities=24% Similarity=0.314 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHccch-----hhHHHHHHHH
Q psy5931 80 AEFYALKGMLLAQIGRSAEANKAFSAAVQMHD-----VMVKAWALWG 121 (173)
Q Consensus 80 aE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~-----~~~kaW~~WG 121 (173)
-|..+|+=.++-|+.+.|-|.+.-...+|+++ +++.+|..-+
T Consensus 137 lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la 183 (299)
T KOG3081|consen 137 LEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLA 183 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHh
Confidence 47889999999999999999999999999998 4788997653
No 247
>PF12186 AcylCoA_dehyd_C: Acyl-CoA dehydrogenase C terminal; InterPro: IPR020964 This entry represents the C-terminal alpha helical domain of some bacterial Acyl-CoA dehydrogenases. It is found in association with PF02770 from PFAM, PF00441 from PFAM, PF02771 from PFAM. There is a conserved ARRL sequence motif. ; PDB: 2OKU_A.
Probab=20.95 E-value=1.9e+02 Score=22.31 Aligned_cols=86 Identities=9% Similarity=0.125 Sum_probs=52.3
Q ss_pred HHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHH
Q psy5931 21 SLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEAN 100 (173)
Q Consensus 21 ~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~ 100 (173)
-|+.|-..-.+|+.+...-+++.++.... .+.++++-+..+.=+.|.+=+--.++-+-|-+...+=-.+||+
T Consensus 5 Yl~~i~E~~~~~~~~el~~l~~rl~~m~~--------~yeeav~~Vke~~nqe~~Df~ARRLvEMa~~iims~LLl~dA~ 76 (114)
T PF12186_consen 5 YLAIIREYEQAEVSPELQPLKERLKKMTE--------KYEEAVAKVKEAKNQELQDFHARRLVEMAAHIIMSYLLLRDAS 76 (114)
T ss_dssp HHHHHHTGGGS---GGGHHHHHHHHHHHH--------HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHHH--------HHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666678899999999999998775 4777777775443332333333445555555555444557888
Q ss_pred HH---HHHHHccchhhH
Q psy5931 101 KA---FSAAVQMHDVMV 114 (173)
Q Consensus 101 ~~---F~~Avql~~~~~ 114 (173)
++ |..+..+.-..+
T Consensus 77 k~pelf~kSA~Vyvr~a 93 (114)
T PF12186_consen 77 KAPELFAKSANVYVRYA 93 (114)
T ss_dssp H--GGGHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHH
Confidence 77 888777665544
No 248
>PLN03218 maturation of RBCL 1; Provisional
Probab=20.56 E-value=8.4e+02 Score=25.39 Aligned_cols=48 Identities=8% Similarity=0.052 Sum_probs=26.2
Q ss_pred HHHHHHHhhhccccCCCchhhHHHHHHHHHHHHHhCCchHHHHHHHHHHc
Q psy5931 59 LQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQ 108 (173)
Q Consensus 59 l~~gL~vi~~tnl~~F~~~qkaE~~~LKG~fl~~Lg~~deA~~~F~~Avq 108 (173)
+.+|+++++..--..+.+. ...|..-...+.+.|+.++|.+.|.....
T Consensus 665 ~eeA~~l~~eM~k~G~~pd--~~tynsLI~ay~k~G~~eeA~~lf~eM~~ 712 (1060)
T PLN03218 665 LDKAFEILQDARKQGIKLG--TVSYSSLMGACSNAKNWKKALELYEDIKS 712 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4455555544332222222 23455555666777777777777776643
No 249
>PF02071 NSF: Aromatic-di-Alanine (AdAR) repeat ; InterPro: IPR000744 Regulated exocytosis of neurotransmitters and hormones, as well as intracellular traffic, requires fusion of two lipid bilayers. SNARE proteins are thought to form a protein bridge, the SNARE complex, between an incoming vesicle and the acceptor compartment. SNARE proteins contribute to the specificity of membrane fusion, implying that the mechanisms by which SNAREs are targeted to subcellular compartments are important for specific docking and fusion of vesicles. This mechanism involves a family of conserved proteins, members of which appear to function at all sites of constitutive and regulated secretion in eukaryotes []. Among them are 2 types of cytosolic protein, NSF (N-ethyl-maleimide-sensitive protein) and the SNAPs (alpha-, beta- and gamma-soluble NSF attachment proteins). The yeast vesicular fusion protein, sec17, a cytoplasmic peripheral membrane protein involved in vesicular transport between the endoplasmic reticulum and the golgi apparatus, shows a high degree of sequence similarity to the alpha-SNAP family. SNAP-25 and its non-neuronal homologue Syndet/SNAP-23 are synthesized as soluble proteins in the cytosol. Both SNAP-25 and Syndet/SNAP-23 are palmitoylated at cysteine residues clustered in a loop between two N- and C-terminal coils and palmitoylation is essential for membrane binding and plasma membrane targeting. The C-terminal and the N-terminal helices of SNAP-25, are each targeted to the plasma membrane by two distinct cysteine-rich domains and appear to regulate the availability of SNAP to form complexes with SNARE [].; GO: 0006886 intracellular protein transport
Probab=20.55 E-value=47 Score=15.82 Aligned_cols=11 Identities=27% Similarity=0.691 Sum_probs=6.8
Q ss_pred HHHHHHHHchh
Q psy5931 146 AVTCFMHACRH 156 (173)
Q Consensus 146 Ai~CyLqA~~~ 156 (173)
|+.||-+|+-+
T Consensus 1 A~~~y~~Aa~~ 11 (12)
T PF02071_consen 1 AIKCYEKAAEC 11 (12)
T ss_pred CcHHHHHHHhh
Confidence 45677777644
No 250
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=20.49 E-value=7.5e+02 Score=23.55 Aligned_cols=29 Identities=28% Similarity=0.240 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHhCCchHHHHHHHHHH
Q psy5931 79 TAEFYALKGMLLAQIGRSAEANKAFSAAV 107 (173)
Q Consensus 79 kaE~~~LKG~fl~~Lg~~deA~~~F~~Av 107 (173)
....|.+=...+.+.|+.|+|.+.|....
T Consensus 527 ~~~~y~~L~~~y~~~G~~~~A~~v~~~m~ 555 (697)
T PLN03081 527 KLNNYVVLLNLYNSSGRQAEAAKVVETLK 555 (697)
T ss_pred CCcchHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 44567777778888888888888887654
No 251
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=20.30 E-value=1.5e+02 Score=20.76 Aligned_cols=32 Identities=16% Similarity=0.027 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHccch
Q psy5931 80 AEFYALKGMLLAQIGRSAEANKAFSAAVQMHD 111 (173)
Q Consensus 80 aE~~~LKG~fl~~Lg~~deA~~~F~~Avql~~ 111 (173)
|--+.-+|.=..+-|++++|...|..+++...
T Consensus 6 A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~ 37 (75)
T cd02677 6 AAELIRLALEKEEEGDYEAAFEFYRAGVDLLL 37 (75)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33444556666667888888888887776633
No 252
>PF09675 Chlamy_scaf: Chlamydia-phage Chp2 scaffold (Chlamy_scaf); InterPro: IPR014131 Members of this entry are encoded by genes in chlamydiaphage such as Vp3. These viruses have around eight genes and infect obligately intracellular bacterial pathogens of the genus Chlamydia. This protein is annotated as VP3 or structural protein (as if a protein of mature viral particles), however, it is displaced from procapsids as DNA is packaged, and therefore is more correctly described as a scaffolding protein.
Probab=20.28 E-value=2.1e+02 Score=22.15 Aligned_cols=14 Identities=7% Similarity=0.323 Sum_probs=7.9
Q ss_pred HHHHHHhCCChHHH
Q psy5931 5 FGKIARKHHLTSVC 18 (173)
Q Consensus 5 fa~iARkh~l~~vc 18 (173)
++|+.|..+.|.+|
T Consensus 14 ~~hl~~r~~~Ygd~ 27 (114)
T PF09675_consen 14 IAHLEQRQPEYGDC 27 (114)
T ss_pred HHHHHhcCCccccc
Confidence 45566666555555
No 253
>KOG1128|consensus
Probab=20.21 E-value=3e+02 Score=27.75 Aligned_cols=98 Identities=20% Similarity=0.300 Sum_probs=57.7
Q ss_pred HHHHHHHhCCChHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHhhhccccCCCchhhHHHH
Q psy5931 4 QFGKIARKHHLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFY 83 (173)
Q Consensus 4 ~fa~iARkh~l~~vc~~~L~ki~~lp~i~v~daF~KlrEq~kc~l~~~~~~~~~el~~gL~vi~~tnl~~F~~~qkaE~~ 83 (173)
.+|..-++.|+..-++...-|++.. .+-+.||.... ....-+.|+--++. ++--+-+|
T Consensus 403 ~laell~slGitksAl~I~Erlemw------------~~vi~CY~~lg-------~~~kaeei~~q~le---k~~d~~ly 460 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERLEMW------------DPVILCYLLLG-------QHGKAEEINRQELE---KDPDPRLY 460 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhHHHH------------HHHHHHHHHhc-------ccchHHHHHHHHhc---CCCcchhH
Confidence 3566677778877777777777654 23455666542 11223444444443 33344445
Q ss_pred HHHHHHHHH----------------------------hCCchHHHHHHHHHHccchhhHHHHHHHHHh
Q psy5931 84 ALKGMLLAQ----------------------------IGRSAEANKAFSAAVQMHDVMVKAWALWGDY 123 (173)
Q Consensus 84 ~LKG~fl~~----------------------------Lg~~deA~~~F~~Avql~~~~~kaW~~WG~~ 123 (173)
.+.|.|+.. -+++++|.+-|..++.+.|-....|..-|.-
T Consensus 461 c~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ 528 (777)
T KOG1128|consen 461 CLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCA 528 (777)
T ss_pred HHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHH
Confidence 554444322 2456777777777788888777778665544
Done!