RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5931
(173 letters)
>gnl|CDD|216950 pfam02259, FAT, FAT domain. The FAT domain is named after FRAP,
ATM and TRRAP.
Length = 350
Score = 111 bits (280), Expect = 5e-30
Identities = 45/198 (22%), Positives = 77/198 (38%), Gaps = 31/198 (15%)
Query: 2 IIQFGKIARKHHLTSVCLDSLFRLYT------IPSVPI------------VDCFEKIRQQ 43
++F +ARK S+ +L +L T +P+V I + +K+R+
Sbjct: 152 WLKFANLARKSGRFSLAEKALLKLLTYDTREDLPNVVIAYAKYLWAKGQQQEAIQKLREF 211
Query: 44 VKCYLQMAA-LDGKNQLQEGLEVI--EHTNLKYLTKEMTAEFYALKGMLLAQI------G 94
V CYL ++L GL TNL+Y ++ A + G L ++ G
Sbjct: 212 VSCYLSKPVGSSSDSELLLGLTYEVISSTNLEYFEAKLLARCFLKLGEWLDKLQMNWGQG 271
Query: 95 RSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQFT-NPSPPGSAPNMVLG--VFAVTCFM 151
+ E +A+ AVQ D KAW W + P + + V AV ++
Sbjct: 272 KKDEILQAYRTAVQFDDQWYKAWHSWALANFEVLQLDEQEPLAPSELRSEYVVPAVEGYL 331
Query: 152 HACRHQKESMSRKYLAKV 169
+ E S + L ++
Sbjct: 332 KSLSLSSEK-SLQDLLRL 348
>gnl|CDD|227277 COG4941, COG4941, Predicted RNA polymerase sigma factor containing
a TPR repeat domain [Transcription].
Length = 415
Score = 30.1 bits (68), Expect = 0.48
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 82 FYALKGMLLAQIGRSAEANKAFSAAVQM 109
++A + LLA++GR EA A+ A+ +
Sbjct: 367 YHAARADLLARLGRVEEARAAYDRAIAL 394
>gnl|CDD|224110 COG1189, COG1189, Predicted rRNA methylase [Translation, ribosomal
structure and biogenesis].
Length = 245
Score = 29.5 bits (67), Expect = 0.67
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 7/37 (18%)
Query: 52 ALD-GKNQLQEGLE------VIEHTNLKYLTKEMTAE 81
A+D G QL L V+E TN++YLT E E
Sbjct: 107 AVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTE 143
>gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR
repeats [Intracellular trafficking and secretion].
Length = 257
Score = 29.3 bits (66), Expect = 0.75
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 55 GKNQLQEG--LEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQM 109
GKNQ++ G E + E + L G L Q+GR EA +A+ A+++
Sbjct: 107 GKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALEL 163
>gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat.
Length = 34
Score = 26.3 bits (59), Expect = 1.2
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 80 AEFYALKGMLLAQIGRSAEANKAFSAAVQM 109
A Y L G + Q+G EA + + A+++
Sbjct: 1 ARAYYLLGQIYLQLGDYEEAKEYYEKALEL 30
>gnl|CDD|225523 COG2976, COG2976, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 207
Score = 28.9 bits (65), Expect = 1.2
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 85 LKGMLLAQIGRSAEANKAFSAAVQMHD 111
L+G +L G EA A+ A++
Sbjct: 164 LRGDILLAKGDKQEARAAYEKALESDA 190
>gnl|CDD|130818 TIGR01757, Malate-DH_plant, malate dehydrogenase, NADP-dependent.
This model represents the NADP-dependent malate
dehydrogenase found in plants, mosses and green algae
and localized to the chloroplast. Malate dehydrogenase
converts oxaloacetate into malate, a critical step in
the C4 cycle which allows circumvention of the effects
of photorespiration. Malate is subsequenctly transported
from the chloroplast to the cytoplasm (and then to the
bundle sheath cells in C4 plants). The plant and moss
enzymes are light regulated via cysteine disulfide
bonds. The enzyme from Sorghum has been crystallized.
Length = 387
Score = 28.8 bits (64), Expect = 1.7
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 64 EVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDY 123
EVI + K+L +E T G L+ + GRS+ A+ A S A + ++V GD+
Sbjct: 247 EVI--KDTKWLEEEFTPTVQKRGGALIKKWGRSSAASTAVSIADAIKSLVVPTPE--GDW 302
Query: 124 ME-AQFTNPSPPGSAPNMVLGVFAVTC 149
+T+ +P G A + VF++ C
Sbjct: 303 FSTGVYTDGNPYGIAEGL---VFSMPC 326
>gnl|CDD|130050 TIGR00977, LeuA_rel, 2-isopropylmalate synthase/homocitrate
synthase family protein. This model represents
uncharacterized proteins related to 2-isopropylmalate
synthases and homocitrate synthases but phylogenetically
distint. Each species represented in the seed alignment
also has a member of a known family of 2-isopropylmalate
synthases [Unknown function, General].
Length = 526
Score = 28.3 bits (63), Expect = 2.0
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 58 QLQEGLEVIEHTNLKYLTKEMTAEFYA-LKGMLLAQ----IGRSAEANK 101
QL+ G +VI NLK LT TA A + + +GRSA A+K
Sbjct: 251 QLKLGYDVIPPENLKKLTS--TARLVAEIVNLPPDDNMPYVGRSAFAHK 297
>gnl|CDD|237624 PRK14143, PRK14143, heat shock protein GrpE; Provisional.
Length = 238
Score = 27.0 bits (60), Expect = 4.4
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 32 PIVDCFEKIRQQVK 45
P+VD FE+ RQQ+K
Sbjct: 125 PVVDNFERARQQLK 138
>gnl|CDD|218560 pfam05336, DUF718, Domain of unknown function (DUF718). This
family consists of several uncharacterized bacterial
proteins of unknown function.
Length = 106
Score = 26.4 bits (59), Expect = 4.6
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 105 AAVQMHDVMVKAWALWGDYMEAQFTNPS-PPGSAPNMVLGVF 145
AA+ V K WAL D ME TNP PG + VF
Sbjct: 65 AAMAETPVNQKWWALMADLME---TNPDNSPGEWWAPLEEVF 103
>gnl|CDD|217869 pfam04065, Not3, Not1 N-terminal domain, CCR4-Not complex
component.
Length = 233
Score = 27.3 bits (61), Expect = 4.6
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 38 EKIRQQVKCYLQMAALDGKNQLQEGLEVIEHT--NLKYLTKEMTAEFYALKGMLLAQIGR 95
+++R Q+K +L + + K+ L E ++IE K + KEM + ++ +G+ A
Sbjct: 55 QRLRDQIKTWLSSSDIKDKDSLLENRKLIETAMERFKAVEKEMKTKAFSKEGLSAASKLD 114
Query: 96 SAEANKA 102
E KA
Sbjct: 115 PKEKEKA 121
>gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat. This Pfam entry
includes outlying Tetratricopeptide-like repeats (TPR)
that are not matched by pfam00515.
Length = 34
Score = 24.8 bits (55), Expect = 5.0
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 80 AEFYALKGMLLAQIGRSAEANKAFSAAVQ 108
AE G+ ++G EA +A+ A++
Sbjct: 1 AEALYNLGLAYYKLGDYEEALEAYEKALE 29
>gnl|CDD|215060 PLN00112, PLN00112, malate dehydrogenase (NADP); Provisional.
Length = 444
Score = 27.1 bits (60), Expect = 6.1
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 18/72 (25%)
Query: 64 EVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDY 123
EVI T+ K+L +E T + G+L+ + GRS+ A+ A S A D
Sbjct: 303 EVI--TDHKWLEEEFTPKVQKRGGVLIKKWGRSSAASTAVSIA---------------DA 345
Query: 124 MEAQFTNPSPPG 135
+++ P+P G
Sbjct: 346 IKS-LVTPTPEG 356
>gnl|CDD|234586 PRK00037, hisS, histidyl-tRNA synthetase; Reviewed.
Length = 412
Score = 26.6 bits (60), Expect = 7.0
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Query: 13 HLTSVCLDSLFRLYTIPSVPIVDCFEKIRQQ-------VKCYLQMAALDGKNQLQEGLE 64
L + DS RL T P + I+D +K Q+ + YL + + +L+E L+
Sbjct: 183 GLDELDEDSKRRLETNP-LRILDKKDKEDQELLKDAPKLLDYLDEESKEHFEELKELLD 240
>gnl|CDD|235703 PRK06125, PRK06125, short chain dehydrogenase; Provisional.
Length = 259
Score = 26.5 bits (59), Expect = 7.7
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 79 TAEFYALKGMLLAQIGRSAEANKAFSAAVQ-MHDVMVKAWAL 119
AE +A +G L + R A+A +A +A ++ H V V AL
Sbjct: 23 AAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHAL 64
>gnl|CDD|216336 pfam01156, IU_nuc_hydro, Inosine-uridine preferring nucleoside
hydrolase.
Length = 304
Score = 26.1 bits (58), Expect = 9.3
Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 6/67 (8%)
Query: 62 GLEVIEHTNLKYLTKEMTAEFYALK---GMLLAQIGRSAEANKAFSAAVQMHDVMVKAWA 118
L+V LT E+ A G LA++ R S +HD + A+
Sbjct: 187 PLDVTRQA---LLTPELLERLAAGGTPAGEFLAELLRFYLEFYIGSEGRPLHDPLAVAYL 243
Query: 119 LWGDYME 125
L +
Sbjct: 244 LDPELFT 250
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.134 0.408
Gapped
Lambda K H
0.267 0.0846 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,602,542
Number of extensions: 750223
Number of successful extensions: 774
Number of sequences better than 10.0: 1
Number of HSP's gapped: 770
Number of HSP's successfully gapped: 22
Length of query: 173
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 83
Effective length of database: 6,945,742
Effective search space: 576496586
Effective search space used: 576496586
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (24.7 bits)