RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5931
(173 letters)
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical,
transport protein; 1.60A {Trypanosoma brucei} SCOP:
a.118.8.1
Length = 121
Score = 33.2 bits (76), Expect = 0.011
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 86 KGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWG 121
+G+ + ++ AEA AF A Q +AW G
Sbjct: 23 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLG 58
Score = 25.9 bits (57), Expect = 4.1
Identities = 6/38 (15%), Positives = 13/38 (34%)
Query: 80 AEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAW 117
E + G+ A+ + A A + A + +
Sbjct: 51 EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVH 88
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.5 bits (76), Expect = 0.029
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 28/135 (20%)
Query: 15 TSVCLDSLFRLYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEV---IEHTNL 71
T + L LY V + D + + + L LD + +GL + +E+ +
Sbjct: 166 TDDYFEELRDLYQTYHVLVGDLIKFSAETLS-ELIRTTLDAEKVFTQGLNILEWLENPSN 224
Query: 72 K----YLTKEMTAEFYALKGMLLAQI----------GRS-AEANKAFSAAVQMHDVMVKA 116
YL + + + + Q+ G + E A +V A
Sbjct: 225 TPDKDYLL---SIPI-SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTA 280
Query: 117 WAL-----WGDYMEA 126
A+ W + +
Sbjct: 281 VAIAETDSWESFFVS 295
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 31.4 bits (71), Expect = 0.14
Identities = 7/48 (14%), Positives = 14/48 (29%)
Query: 80 AEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQ 127
+ + +G + A + +H +A A G Q
Sbjct: 23 FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQ 70
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR
domain, ATPase, protein secret protein transport; 2.00A
{Mycobacterium tuberculosis}
Length = 282
Score = 30.5 bits (68), Expect = 0.22
Identities = 10/68 (14%), Positives = 13/68 (19%)
Query: 52 ALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHD 111
A E + N + M G + A H
Sbjct: 180 AAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239
Query: 112 VMVKAWAL 119
A AL
Sbjct: 240 EPKVAAAL 247
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 29.9 bits (68), Expect = 0.34
Identities = 10/71 (14%), Positives = 24/71 (33%)
Query: 47 YLQMAALDGKNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAA 106
+ + + IE K + + + G +L + G+ + A + + AA
Sbjct: 41 NRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAA 100
Query: 107 VQMHDVMVKAW 117
V + +
Sbjct: 101 VDRDTTRLDMY 111
>2kat_A Uncharacterized protein; NESG, structure, structural genomics,
PSI-2, protein structure initiative; NMR {Bordetella
parapertussis}
Length = 115
Score = 28.8 bits (65), Expect = 0.38
Identities = 9/48 (18%), Positives = 14/48 (29%)
Query: 80 AEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQ 127
G A+ + A AA+ AW G ++ Q
Sbjct: 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQ 66
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein
STR initiative, midwest center for structural genomics,
MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Length = 291
Score = 29.6 bits (67), Expect = 0.54
Identities = 11/37 (29%), Positives = 14/37 (37%), Gaps = 7/37 (18%)
Query: 52 ALD-GKNQLQEGL------EVIEHTNLKYLTKEMTAE 81
A+D G NQL L +E N +Y E
Sbjct: 113 AVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTE 149
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; 2.54A {Chlorobium tepidum} SCOP:
a.118.8.8
Length = 159
Score = 28.3 bits (62), Expect = 0.80
Identities = 19/92 (20%), Positives = 36/92 (39%), Gaps = 9/92 (9%)
Query: 29 PSVPIVDCFEKIRQQVKCYLQMA-ALDGKNQLQEGLE----VIEHTNLKYLTKEMTAEFY 83
++P + F+ C+ +A AL G E L + + N + + + +
Sbjct: 42 HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLW 101
Query: 84 AL----KGMLLAQIGRSAEANKAFSAAVQMHD 111
+ + L +GR AEA F V+M +
Sbjct: 102 ISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 133
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure
initiative, NE SGX research center for structural
genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Length = 232
Score = 28.7 bits (65), Expect = 0.87
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 7/37 (18%)
Query: 52 ALD-GKNQLQEGL------EVIEHTNLKYLTKEMTAE 81
ALD G NQL + V+E N + +
Sbjct: 65 ALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQ 101
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 28.7 bits (64), Expect = 1.2
Identities = 8/68 (11%), Positives = 25/68 (36%), Gaps = 1/68 (1%)
Query: 42 QQVKCYLQMAALDGK-NQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEAN 100
++ + L G+ N ++ + ++ ++ A L+G + + A
Sbjct: 161 VKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAK 220
Query: 101 KAFSAAVQ 108
+ + A+
Sbjct: 221 ECYKEALM 228
Score = 27.1 bits (60), Expect = 4.0
Identities = 9/78 (11%), Positives = 24/78 (30%), Gaps = 7/78 (8%)
Query: 56 KNQLQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVK 115
K ++ L E E +++ K L R + + +++ +
Sbjct: 281 KTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLD 340
Query: 116 AW-----ALW--GDYMEA 126
+ +L G+ +
Sbjct: 341 VYPLHLASLHESGEKNKL 358
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 1.2
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 8/36 (22%)
Query: 11 KHHLTSVCLDSLFRLYTIP-SVPIVDCFEKIRQQVK 45
K L L + +LY S P + I+ ++
Sbjct: 19 KQALKK--LQASLKLYA-DDSAPAL----AIKATME 47
Score = 28.0 bits (61), Expect = 1.2
Identities = 4/19 (21%), Positives = 8/19 (42%), Gaps = 1/19 (5%)
Query: 124 MEAQFTNPSPPGSAPNMVL 142
++A SAP + +
Sbjct: 25 LQASL-KLYADDSAPALAI 42
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 28.1 bits (63), Expect = 1.7
Identities = 9/54 (16%), Positives = 19/54 (35%), Gaps = 7/54 (12%)
Query: 80 AEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAW-----ALW--GDYMEA 126
FY+ G + + + A+++ KA A G++ +A
Sbjct: 59 PVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDA 112
Score = 27.0 bits (60), Expect = 4.0
Identities = 14/79 (17%), Positives = 22/79 (27%), Gaps = 3/79 (3%)
Query: 80 AEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGD-YMEAQFTNPSPPGSAP 138
E +L G A K + A ++ +V K G +A
Sbjct: 378 PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPT 437
Query: 139 NMVLGVF--AVTCFMHACR 155
+ F A+ AC
Sbjct: 438 QLDEEKFNAAIKLLTKACE 456
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown
function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Length = 275
Score = 27.7 bits (62), Expect = 1.7
Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 8/83 (9%)
Query: 52 ALDGKNQLQEGLEVIEHT-NLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMH 110
L Q + L +E + LT + A+ +G+L +G A A FS A+ +
Sbjct: 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR 73
Query: 111 DVMVKAW-----ALW--GDYMEA 126
M + + L G++ A
Sbjct: 74 PDMPEVFNYLGIYLTQAGNFDAA 96
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR
protein, peroxin 5, PEX5, PTS1 binding domain,
protein-peptide complex, receptor; 2.00A {Trypanosoma
brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Length = 327
Score = 28.0 bits (63), Expect = 1.8
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 76 KEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQ 108
M E +G+ + ++ AEA AF A Q
Sbjct: 17 PYMYHENPMEEGLSMLKLANLAEAALAFEAVCQ 49
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain,
DNA-binding, transcription regulation, transmembrane;
1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Length = 372
Score = 27.8 bits (61), Expect = 2.0
Identities = 8/49 (16%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 79 TAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQ 127
+ Y +K + G++ E+ +A + + + + L G E +
Sbjct: 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMK 323
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110; OGT, glcnac, nucleoporin, O-linked glycosylation,
TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 27.5 bits (62), Expect = 2.1
Identities = 5/38 (13%), Positives = 15/38 (39%)
Query: 80 AEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAW 117
L + Q R + + A++ + ++ +A+
Sbjct: 33 TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAY 70
Score = 27.5 bits (62), Expect = 2.6
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
Query: 80 AEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAW-----ALW--GDYMEA 126
AE Y+ G + + G+ EA + + A+++ + + AL GD A
Sbjct: 67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 120
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown
function, PSI-2, protein structure initiative; NMR
{Methanococcus maripaludis}
Length = 112
Score = 26.6 bits (60), Expect = 2.3
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 7/54 (12%)
Query: 80 AEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAW-----ALW--GDYMEA 126
E Y L+G+L G E+ F A+Q+ K W AL+ Y EA
Sbjct: 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEA 59
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 27.3 bits (60), Expect = 3.1
Identities = 12/74 (16%), Positives = 21/74 (28%), Gaps = 2/74 (2%)
Query: 46 CYLQMAALDGKNQ--LQEGLEVIEHTNLKYLTKEMTAEFYALKGMLLAQIGRSAEANKAF 103
YL + G+N Q+ L + + + L EA + F
Sbjct: 222 AYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGF 281
Query: 104 SAAVQMHDVMVKAW 117
S A + +
Sbjct: 282 SQAAALDPAWPEPQ 295
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 27.2 bits (61), Expect = 3.2
Identities = 8/42 (19%), Positives = 15/42 (35%)
Query: 80 AEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWG 121
AE L+ + G +A AA ++ +A+
Sbjct: 154 AELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKIS 195
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 27.0 bits (60), Expect = 3.4
Identities = 8/54 (14%), Positives = 18/54 (33%), Gaps = 7/54 (12%)
Query: 80 AEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAW-----ALW--GDYMEA 126
FY+ +G + + + A+++ K A G + +A
Sbjct: 39 PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADA 92
>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 2.30A {Enterococcus faecalis} PDB:
3fd8_A* 3hnp_A
Length = 349
Score = 26.9 bits (60), Expect = 3.5
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 1 AIIQFGKIARKHHLTSVCLDSLFRLYTI 28
I FGK A ++HL V + + TI
Sbjct: 6 GFIGFGKSANRYHLPYVMIRETLEVKTI 33
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella
flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 26.3 bits (58), Expect = 3.6
Identities = 8/48 (16%), Positives = 12/48 (25%), Gaps = 1/48 (2%)
Query: 74 LTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWG 121
+ +M + Y+ GR EA F V
Sbjct: 31 IPDDMMDDIYSY-AYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLA 77
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide
repeat, type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 26.4 bits (58), Expect = 4.0
Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 8/60 (13%)
Query: 74 LTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAW-------ALWGDYMEA 126
++ + + Y+L Q G +A+ F A + + + G Y A
Sbjct: 16 ISSDTLEQLYSL-AFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLA 74
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.1 bits (59), Expect = 4.2
Identities = 12/140 (8%), Positives = 31/140 (22%), Gaps = 49/140 (35%)
Query: 18 CLDSLFR---LYTIPSVPIVDCFEKIRQQVKCYLQMAALDGKNQLQEGLEVIEHTNLKYL 74
D L+ ++ +V + + K+RQ + +L+ V+
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALL------------ELRPAKNVLID------ 156
Query: 75 TKEMTAEFYALKGM-------LLAQIGRSAEANKAFSAAV---------QMHDVMVKAWA 118
G+ + + S + + V+
Sbjct: 157 ------------GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204
Query: 119 LWGDYMEAQFTNPSPPGSAP 138
L + +
Sbjct: 205 LLYQIDPNWTSRSDHSSNIK 224
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin,
type III secretion, protein binding; 1.85A {Pseudomonas
aeruginosa} PDB: 2xcc_A
Length = 142
Score = 26.2 bits (58), Expect = 4.7
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 74 LTKEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWG 121
L+++ + YAL G Q G+ +A K F A + + + G
Sbjct: 13 LSEDTLEQLYAL-GFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLG 59
Score = 25.5 bits (56), Expect = 6.5
Identities = 6/30 (20%), Positives = 9/30 (30%)
Query: 80 AEFYALKGMLLAQIGRSAEANKAFSAAVQM 109
F Q+G A F +A +
Sbjct: 86 PRFPFHAAECHLQLGDLDGAESGFYSARAL 115
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 26.6 bits (59), Expect = 5.2
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 80 AEFYALKGMLLAQIGRSAEANKAFSAAVQM 109
AE L+ + G +A AA ++
Sbjct: 177 AELRELRAECFIKEGEPRKAISDLKAASKL 206
Score = 25.8 bits (57), Expect = 9.4
Identities = 7/48 (14%), Positives = 17/48 (35%)
Query: 80 AEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQ 127
+G LL + G+ EA F ++ + + +++
Sbjct: 94 TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSD 141
Score = 25.8 bits (57), Expect = 9.4
Identities = 9/42 (21%), Positives = 14/42 (33%)
Query: 76 KEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAW 117
E T ++ + EA + S +QM V A
Sbjct: 291 AEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNAL 332
>1fm2_B Glutaryl 7-aminocephalosporanic acid acylase; cephalosporin
acylase, antibiotics, penicillin acylase, N- terminal
hydrolase; 2.00A {Brevundimonas diminuta} SCOP:
d.153.1.2 PDB: 1jvz_B* 1jw0_B 3jtq_B 1ghd_B 1gk0_B
1gk1_B 2ae4_B 3jtr_B 2ae5_B 2ae3_B 1or0_B 2adv_C 2adv_B
Length = 520
Score = 26.3 bits (58), Expect = 7.0
Identities = 11/57 (19%), Positives = 18/57 (31%), Gaps = 7/57 (12%)
Query: 95 RSAEANKAFSAAVQMHDVMVKAW----ALWGDYMEAQFTNPSPPGSAPNMVLGVFAV 147
A A+ + + +GD + + PG+A LG F V
Sbjct: 384 DPKAAVDQLRTAI---ANTKRKYGAIDRPFGDASRMILNDVNVPGAAGYGNLGSFRV 437
>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC,
structur genomics, protein structure initiative; 1.93A
{Bacteroides fragilis nctc 9343}
Length = 362
Score = 25.7 bits (57), Expect = 7.8
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 1 AIIQFGKIARKHHLTSVCLDSLFRLYTI 28
+ FG + H + + F LY I
Sbjct: 9 GLAAFGMSGQVFHAPFISTNPHFELYKI 36
>3r8n_G 30S ribosomal protein S7; protein biosynthesis, RNA, tRNA, transfer
RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia
coli} PDB: 2ykr_G 3oaq_G 3ofa_G 3ofx_G 3ofo_G 3r8o_G
3sfs_G* 3ofp_G 3fih_G* 2wwl_G 3oar_G 3ofb_G 3ofy_G
4a2i_G 2gy9_G 2gyb_G
Length = 151
Score = 25.2 bits (56), Expect = 8.6
Identities = 8/10 (80%), Positives = 9/10 (90%)
Query: 95 RSAEANKAFS 104
R AEANKAF+
Sbjct: 142 RMAEANKAFA 151
>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics,
putative oxidoreductase YVAA, oxidoredu PSI-2, protein
structure initiative; 2.03A {Bacillus subtilis subsp}
PDB: 3gfg_A
Length = 358
Score = 25.8 bits (57), Expect = 8.6
Identities = 4/28 (14%), Positives = 11/28 (39%)
Query: 1 AIIQFGKIARKHHLTSVCLDSLFRLYTI 28
I+ +G H + + +++ I
Sbjct: 9 GILGYGLSGSVFHGPLLDVLDEYQISKI 36
>1hus_A Ribosomal protein S7; RNA-binding protein, decoding center,; 2.50A
{Geobacillus stearothermophilus} SCOP: a.75.1.1
Length = 155
Score = 25.2 bits (56), Expect = 8.9
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 95 RSAEANKAFS 104
+ AEANKAF+
Sbjct: 142 KMAEANKAFA 151
>1rss_A Ribosomal protein S7; RNA-binding, translation; 1.90A {Thermus
thermophilus} SCOP: a.75.1.1 PDB: 1n32_G* 1i95_G*
1i96_G* 1i97_G* 1i94_G 1j5e_G* 1n33_G* 1n34_G 1n36_G
1pns_G 1pnx_G 1voq_G 1vos_G 1vov_G 1vox_G 1voz_G 2e5l_G
2zm6_G 3fic_G* 3mr8_G ...
Length = 151
Score = 25.2 bits (56), Expect = 9.2
Identities = 6/10 (60%), Positives = 9/10 (90%)
Query: 95 RSAEANKAFS 104
R AEAN+A++
Sbjct: 138 RMAEANRAYA 147
>3gty_S TF, 30S ribosomal protein S7; chaperone-client complex, cell cycle,
cell division, chapero isomerase, rotamase,
ribonucleoprotein, binding; 3.40A {Thermotoga maritima}
Length = 149
Score = 25.2 bits (56), Expect = 9.5
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 95 RSAEANKAFS 104
R AEAN+AF+
Sbjct: 136 RMAEANRAFA 145
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 25.9 bits (56), Expect = 9.7
Identities = 7/48 (14%), Positives = 18/48 (37%)
Query: 80 AEFYALKGMLLAQIGRSAEANKAFSAAVQMHDVMVKAWALWGDYMEAQ 127
A+ + + G EA + + A+++ A + ++ Q
Sbjct: 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ 56
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.134 0.408
Gapped
Lambda K H
0.267 0.0519 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,644,735
Number of extensions: 142871
Number of successful extensions: 442
Number of sequences better than 10.0: 1
Number of HSP's gapped: 441
Number of HSP's successfully gapped: 78
Length of query: 173
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 86
Effective length of database: 4,272,666
Effective search space: 367449276
Effective search space used: 367449276
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.1 bits)