RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5931
         (173 letters)



>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III
           {Escherichia coli [TaxId: 562]}
          Length = 366

 Score = 24.9 bits (52), Expect = 6.0
 Identities = 10/34 (29%), Positives = 15/34 (44%)

Query: 76  KEMTAEFYALKGMLLAQIGRSAEANKAFSAAVQM 109
             M AEF AL+  +    G   EA +    A++ 
Sbjct: 8   DTMHAEFNALRAQVAINDGNPDEAERLAKLALEE 41


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.134    0.408 

Gapped
Lambda     K      H
   0.267   0.0625    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 631,545
Number of extensions: 26068
Number of successful extensions: 75
Number of sequences better than 10.0: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 6
Length of query: 173
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 94
Effective length of database: 1,322,926
Effective search space: 124355044
Effective search space used: 124355044
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.3 bits)