BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5933
(406 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NMM|B Chain B, Beta-1,4-Galactosyltransferase Mutant Cys342thr Complex
With Alpha- Lactalbumin And Glcnac
pdb|1NMM|D Chain D, Beta-1,4-Galactosyltransferase Mutant Cys342thr Complex
With Alpha- Lactalbumin And Glcnac
pdb|1O0R|A Chain A, Crystal Structure Of The Catalytic Domain Of Bovine
Beta1,4- Galactosyltransferase Complex With
Udp-Galactose
pdb|1O0R|B Chain B, Crystal Structure Of The Catalytic Domain Of Bovine
Beta1,4- Galactosyltransferase Complex With
Udp-Galactose
Length = 286
Score = 186 bits (472), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 86/184 (46%), Positives = 122/184 (66%), Gaps = 1/184 (0%)
Query: 118 INKGGAWEPTDCIPQHQVAIIVPYMNREGQLKTFLLHIHQFLQKQFISYQIFVIEQRHPA 177
+ GG + P DCI H+VAII+P+ NR+ LK +L ++H LQ+Q + Y I+VI Q +
Sbjct: 49 VKLGGRYTPMDCISPHKVAIIIPFRNRQEHLKYWLYYLHPILQRQQLDYGIYVINQAGES 108
Query: 178 EFNRGKLLNIGYIEALKIKPFHCFIFHDVDLMPTNPNNIYACTKQPRHMSVAIDTFNYEL 237
FNR KLLN+G+ EALK ++CF+F DVDL+P N +N Y C QPRH+SVA+D F + L
Sbjct: 109 MFNRAKLLNVGFKEALKDYDYNCFVFSDVDLIPMNDHNTYRCFSQPRHISVAMDKFGFSL 168
Query: 238 PYCTIFGGAIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQRLS-NYYSICRFSKQVSEYVM 296
PY FGG A+ + QF +NGF N Y+GWG EDDD++ RL+ S+ R + + + M
Sbjct: 169 PYVQYFGGVSALSKQQFLSINGFPNNYWGWGGEDDDIYNRLAFRGMSVSRPNAVIGKTRM 228
Query: 297 LNHA 300
+ H+
Sbjct: 229 IRHS 232
>pdb|1FR8|A Chain A, Crystal Structure Of The Bovine Beta 1,4
Galactosyltransferase (B4galt1) Catalytic Domain
Complexed With Uridine Diphosphogalactose
pdb|1FR8|B Chain B, Crystal Structure Of The Bovine Beta 1,4
Galactosyltransferase (B4galt1) Catalytic Domain
Complexed With Uridine Diphosphogalactose
Length = 288
Score = 186 bits (472), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 86/184 (46%), Positives = 122/184 (66%), Gaps = 1/184 (0%)
Query: 118 INKGGAWEPTDCIPQHQVAIIVPYMNREGQLKTFLLHIHQFLQKQFISYQIFVIEQRHPA 177
+ GG + P DCI H+VAII+P+ NR+ LK +L ++H LQ+Q + Y I+VI Q +
Sbjct: 51 VKLGGRYTPMDCISPHKVAIIIPFRNRQEHLKYWLYYLHPILQRQQLDYGIYVINQAGES 110
Query: 178 EFNRGKLLNIGYIEALKIKPFHCFIFHDVDLMPTNPNNIYACTKQPRHMSVAIDTFNYEL 237
FNR KLLN+G+ EALK ++CF+F DVDL+P N +N Y C QPRH+SVA+D F + L
Sbjct: 111 MFNRAKLLNVGFKEALKDYDYNCFVFSDVDLIPMNDHNTYRCFSQPRHISVAMDKFGFSL 170
Query: 238 PYCTIFGGAIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQRLS-NYYSICRFSKQVSEYVM 296
PY FGG A+ + QF +NGF N Y+GWG EDDD++ RL+ S+ R + + + M
Sbjct: 171 PYVQYFGGVSALSKQQFLSINGFPNNYWGWGGEDDDIYNRLAFRGMSVSRPNAVIGKCRM 230
Query: 297 LNHA 300
+ H+
Sbjct: 231 IRHS 234
>pdb|1FGX|A Chain A, Crystal Structure Of The Bovine Beta 1,4
Galactosyltransferase (B4galt1) Catalytic Domain
Complexed With Ump
pdb|1FGX|B Chain B, Crystal Structure Of The Bovine Beta 1,4
Galactosyltransferase (B4galt1) Catalytic Domain
Complexed With Ump
Length = 288
Score = 186 bits (471), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 86/184 (46%), Positives = 122/184 (66%), Gaps = 1/184 (0%)
Query: 118 INKGGAWEPTDCIPQHQVAIIVPYMNREGQLKTFLLHIHQFLQKQFISYQIFVIEQRHPA 177
+ GG + P DCI H+VAII+P+ NR+ LK +L ++H LQ+Q + Y I+VI Q +
Sbjct: 51 VKLGGRYTPMDCISPHKVAIIIPFRNRQEHLKYWLYYLHPILQRQQLDYGIYVINQAGES 110
Query: 178 EFNRGKLLNIGYIEALKIKPFHCFIFHDVDLMPTNPNNIYACTKQPRHMSVAIDTFNYEL 237
FNR KLLN+G+ EALK ++CF+F DVDL+P N +N Y C QPRH+SVA+D F + L
Sbjct: 111 MFNRAKLLNVGFKEALKDYDYNCFVFSDVDLIPMNDHNTYRCFSQPRHISVAMDKFGFSL 170
Query: 238 PYCTIFGGAIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQRLS-NYYSICRFSKQVSEYVM 296
PY FGG A+ + QF +NGF N Y+GWG EDDD++ RL+ S+ R + + + M
Sbjct: 171 PYVQYFGGVSALSKQQFLSINGFPNNYWGWGGEDDDIYNRLAFRGMSVSRPNAVIGKCRM 230
Query: 297 LNHA 300
+ H+
Sbjct: 231 IRHS 234
>pdb|1NF5|B Chain B, Crystal Structure Of Lactose Synthase, Complex With
Glucose
pdb|1NF5|D Chain D, Crystal Structure Of Lactose Synthase, Complex With
Glucose
pdb|1NKH|B Chain B, Crystal Structure Of Lactose Synthase Complex With Udp And
Manganese
pdb|1NKH|D Chain D, Crystal Structure Of Lactose Synthase Complex With Udp And
Manganese
pdb|1NQI|B Chain B, Crystal Structure Of Lactose Synthase, A 1:1 Complex
Between Beta1,4- Galactosyltransferase And
Alpha-Lactalbumin In The Presence Of Glcnac
pdb|1NQI|D Chain D, Crystal Structure Of Lactose Synthase, A 1:1 Complex
Between Beta1,4- Galactosyltransferase And
Alpha-Lactalbumin In The Presence Of Glcnac
pdb|1NWG|B Chain B, Beta-1,4-Galactosyltransferase Complex With Alpha-
Lactalbumin And N-Butanoyl-Glucoamine
pdb|1NWG|D Chain D, Beta-1,4-Galactosyltransferase Complex With Alpha-
Lactalbumin And N-Butanoyl-Glucoamine
pdb|1O23|B Chain B, Crystal Structure Of Lactose Synthase In The Presence Of
Udp-glucose
pdb|1O23|D Chain D, Crystal Structure Of Lactose Synthase In The Presence Of
Udp-glucose
pdb|1OQM|B Chain B, A 1:1 Complex Between Alpha-Lactalbumin And Beta1,4-
Galactosyltransferase In The Presence Of Udp-N-Acetyl-
Galactosamine
pdb|1OQM|D Chain D, A 1:1 Complex Between Alpha-Lactalbumin And Beta1,4-
Galactosyltransferase In The Presence Of Udp-N-Acetyl-
Galactosamine
Length = 286
Score = 185 bits (470), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 86/184 (46%), Positives = 122/184 (66%), Gaps = 1/184 (0%)
Query: 118 INKGGAWEPTDCIPQHQVAIIVPYMNREGQLKTFLLHIHQFLQKQFISYQIFVIEQRHPA 177
+ GG + P DCI H+VAII+P+ NR+ LK +L ++H LQ+Q + Y I+VI Q +
Sbjct: 49 VKLGGRYTPMDCISPHKVAIIIPFRNRQEHLKYWLYYLHPILQRQQLDYGIYVINQAGES 108
Query: 178 EFNRGKLLNIGYIEALKIKPFHCFIFHDVDLMPTNPNNIYACTKQPRHMSVAIDTFNYEL 237
FNR KLLN+G+ EALK ++CF+F DVDL+P N +N Y C QPRH+SVA+D F + L
Sbjct: 109 MFNRAKLLNVGFKEALKDYDYNCFVFSDVDLIPMNDHNTYRCFSQPRHISVAMDKFGFSL 168
Query: 238 PYCTIFGGAIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQRLS-NYYSICRFSKQVSEYVM 296
PY FGG A+ + QF +NGF N Y+GWG EDDD++ RL+ S+ R + + + M
Sbjct: 169 PYVQYFGGVSALSKQQFLSINGFPNNYWGWGGEDDDIYNRLAFRGMSVSRPNAVIGKCRM 228
Query: 297 LNHA 300
+ H+
Sbjct: 229 IRHS 232
>pdb|1YRO|B Chain B, Crystal Structure Of Beta14,-Galactosyltransferase Mutant
Arg228lys In Complex With Alpha-Lactalbumin In The
Presence Of Udp-Galactose And Mn
pdb|1YRO|D Chain D, Crystal Structure Of Beta14,-Galactosyltransferase Mutant
Arg228lys In Complex With Alpha-Lactalbumin In The
Presence Of Udp-Galactose And Mn
Length = 286
Score = 185 bits (469), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 85/184 (46%), Positives = 122/184 (66%), Gaps = 1/184 (0%)
Query: 118 INKGGAWEPTDCIPQHQVAIIVPYMNREGQLKTFLLHIHQFLQKQFISYQIFVIEQRHPA 177
+ GG + P DCI H+VAII+P+ NR+ LK +L ++H LQ+Q + Y I+VI Q +
Sbjct: 49 VKLGGRYTPMDCISPHKVAIIIPFRNRQEHLKYWLYYLHPILQRQQLDYGIYVINQAGES 108
Query: 178 EFNRGKLLNIGYIEALKIKPFHCFIFHDVDLMPTNPNNIYACTKQPRHMSVAIDTFNYEL 237
FN+ KLLN+G+ EALK ++CF+F DVDL+P N +N Y C QPRH+SVA+D F + L
Sbjct: 109 MFNKAKLLNVGFKEALKDYDYNCFVFSDVDLIPMNDHNTYRCFSQPRHISVAMDKFGFSL 168
Query: 238 PYCTIFGGAIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQRLS-NYYSICRFSKQVSEYVM 296
PY FGG A+ + QF +NGF N Y+GWG EDDD++ RL+ S+ R + + + M
Sbjct: 169 PYVQYFGGVSALSKQQFLSINGFPNNYWGWGGEDDDIYNRLAFRGMSVSRPNAVIGKTRM 228
Query: 297 LNHA 300
+ H+
Sbjct: 229 IRHS 232
>pdb|2FYD|B Chain B, Catalytic Domain Of Bovine Beta 1, 4-Galactosyltransferase
In Complex With Alpha-Lactalbumin, Glucose, Mn, And
Udp-N- Acetylgalactosamine
pdb|2FYD|D Chain D, Catalytic Domain Of Bovine Beta 1, 4-Galactosyltransferase
In Complex With Alpha-Lactalbumin, Glucose, Mn, And
Udp-N- Acetylgalactosamine
Length = 286
Score = 184 bits (468), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 86/184 (46%), Positives = 121/184 (65%), Gaps = 1/184 (0%)
Query: 118 INKGGAWEPTDCIPQHQVAIIVPYMNREGQLKTFLLHIHQFLQKQFISYQIFVIEQRHPA 177
+ GG + P DCI H+VAII+P+ NR+ LK +L ++H LQ+Q + Y I+VI Q +
Sbjct: 49 VKLGGRYTPMDCISPHKVAIIIPFRNRQEHLKYWLYYLHPILQRQQLDYGIYVINQAGES 108
Query: 178 EFNRGKLLNIGYIEALKIKPFHCFIFHDVDLMPTNPNNIYACTKQPRHMSVAIDTFNYEL 237
FNR KLLN+G+ EALK ++CF+F DVDL+P N +N Y C QPRH+SVA+D F + L
Sbjct: 109 MFNRAKLLNVGFKEALKDYDYNCFVFSDVDLIPMNDHNTYRCFSQPRHISVAMDKFGFSL 168
Query: 238 PYCTIFGGAIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQRLS-NYYSICRFSKQVSEYVM 296
PY FGG A+ + QF +NGF N Y GWG EDDD++ RL+ S+ R + + + M
Sbjct: 169 PYVQYFGGVSALSKQQFLSINGFPNNYCGWGGEDDDIYNRLAFRGMSVSRPNAVIGKTRM 228
Query: 297 LNHA 300
+ H+
Sbjct: 229 IRHS 232
>pdb|1TVY|A Chain A, Beta-1,4-Galactosyltransferase Mutant Met344his
(M344h-Gal- T1) Complex With Udp-Galactose And Manganese
pdb|1TVY|B Chain B, Beta-1,4-Galactosyltransferase Mutant Met344his
(M344h-Gal- T1) Complex With Udp-Galactose And Manganese
pdb|1TW1|A Chain A, Beta-1,4-galactosyltransferase Mutant Met344his
(m344h-gal- T1) Complex With Udp-galactose And Magnesium
pdb|1TW1|B Chain B, Beta-1,4-galactosyltransferase Mutant Met344his
(m344h-gal- T1) Complex With Udp-galactose And Magnesium
pdb|1TW5|A Chain A, Beta1,4-Galactosyltransferase Mutant M344h-Gal-T1 In
Complex With Chitobiose
pdb|1TW5|B Chain B, Beta1,4-Galactosyltransferase Mutant M344h-Gal-T1 In
Complex With Chitobiose
pdb|2FYC|B Chain B, Crystal Structure Of The Catalytic Domain Of Bovine
Beta1,4- Galactosyltransferase-I In Complex With
Alpha-Lactalbumin, Ca And Udp-Galactose
pdb|2FYC|D Chain D, Crystal Structure Of The Catalytic Domain Of Bovine
Beta1,4- Galactosyltransferase-I In Complex With
Alpha-Lactalbumin, Ca And Udp-Galactose
Length = 286
Score = 183 bits (465), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 82/162 (50%), Positives = 112/162 (69%)
Query: 118 INKGGAWEPTDCIPQHQVAIIVPYMNREGQLKTFLLHIHQFLQKQFISYQIFVIEQRHPA 177
+ GG + P DCI H+VAII+P+ NR+ LK +L ++H LQ+Q + Y I+VI Q +
Sbjct: 49 VKLGGRYTPMDCISPHKVAIIIPFRNRQEHLKYWLYYLHPILQRQQLDYGIYVINQAGES 108
Query: 178 EFNRGKLLNIGYIEALKIKPFHCFIFHDVDLMPTNPNNIYACTKQPRHMSVAIDTFNYEL 237
FNR KLLN+G+ EALK ++CF+F DVDL+P N +N Y C QPRH+SVA+D F + L
Sbjct: 109 MFNRAKLLNVGFKEALKDYDYNCFVFSDVDLIPMNDHNTYRCFSQPRHISVAMDKFGFSL 168
Query: 238 PYCTIFGGAIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQRLS 279
PY FGG A+ + QF +NGF N Y+GWG EDDD++ RL+
Sbjct: 169 PYVQYFGGVSALSKQQFLSINGFPNNYWGWGGEDDDIYNRLA 210
>pdb|2AE7|A Chain A, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Pentasaccharide
pdb|2AE7|B Chain B, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Pentasaccharide
pdb|2AE7|C Chain C, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Pentasaccharide
pdb|2AEC|A Chain A, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,2-Man-Alpha1,6-Man- Beta-Or
pdb|2AEC|B Chain B, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,2-Man-Alpha1,6-Man- Beta-Or
pdb|2AEC|C Chain C, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,2-Man-Alpha1,6-Man- Beta-Or
pdb|2AES|A Chain A, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,2-Man-Alpha1,3-Man- Beta-Or
pdb|2AES|B Chain B, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,2-Man-Alpha1,3-Man- Beta-Or
pdb|2AES|C Chain C, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,2-Man-Alpha1,3-Man- Beta-Or
pdb|2AGD|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase- I(M340h-B4gal-T1)
In Complex With Glcnac-Beta1,4-Man-Alpha1,3-Man- Beta-Or
pdb|2AGD|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase- I(M340h-B4gal-T1)
In Complex With Glcnac-Beta1,4-Man-Alpha1,3-Man- Beta-Or
pdb|2AGD|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase- I(M340h-B4gal-T1)
In Complex With Glcnac-Beta1,4-Man-Alpha1,3-Man- Beta-Or
pdb|2AH9|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Chitotriose
pdb|2AH9|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Chitotriose
pdb|2AH9|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Chitotriose
pdb|2FY7|A Chain A, Crystal Structure Of The Catalytic Domain Of The Human
Beta1,4-galactosyltransferase Mutant M339h In Apo Form
pdb|2FYA|A Chain A, Crystal Structure Of The Catalytic Domain Of The Human
Beta1, 4-Galactosyltransferase Mutant M339h Complex With
Manganese
pdb|2FYB|A Chain A, Crystal Structure Of The Catalytic Domain Of The Human
Beta1,4-Galactosyltransferase Mutant M339h In Complex
With Mn And Udp-Galactose In Open Conformation
pdb|3EE5|A Chain A, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,3-Gal-Beta-
Naphthalenemethanol
pdb|3EE5|B Chain B, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,3-Gal-Beta-
Naphthalenemethanol
pdb|3EE5|C Chain C, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,3-Gal-Beta-
Naphthalenemethanol
pdb|4EE3|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Pentasaccharide
pdb|4EE3|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Pentasaccharide
pdb|4EE3|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Pentasaccharide
pdb|4EE4|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Tetrasaccharide From Lacto-N- Neohexose
pdb|4EE4|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Tetrasaccharide From Lacto-N- Neohexose
pdb|4EE4|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Tetrasaccharide From Lacto-N- Neohexose
pdb|4EE5|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Trisaccharide From Lacto-N- Neotetraose
pdb|4EE5|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Trisaccharide From Lacto-N- Neotetraose
pdb|4EE5|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Trisaccharide From Lacto-N- Neotetraose
pdb|4EEA|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Gal-Beta1,4-Glc-Beta
pdb|4EEA|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Gal-Beta1,4-Glc-Beta
pdb|4EEA|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Gal-Beta1,4-Glc-Beta
pdb|4EEG|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Gal-Beta
pdb|4EEG|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Gal-Beta
pdb|4EEG|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Gal-Beta
pdb|4EEM|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Man-Alpha-Methyl
pdb|4EEM|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Man-Alpha-Methyl
pdb|4EEM|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Man-Alpha-Methyl
pdb|4EEO|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Glcnac-Alpha-Benzyl
pdb|4EEO|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Glcnac-Alpha-Benzyl
pdb|4EEO|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Glcnac-Alpha-Benzyl
Length = 287
Score = 183 bits (465), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 83/162 (51%), Positives = 110/162 (67%)
Query: 117 NINKGGAWEPTDCIPQHQVAIIVPYMNREGQLKTFLLHIHQFLQKQFISYQIFVIEQRHP 176
N+ GG + P DC+ H+VAII+P+ NR+ LK +L ++H LQ+Q + Y I+VI Q
Sbjct: 49 NVKMGGRYAPRDCVSPHKVAIIIPFRNRQEHLKYWLYYLHPVLQRQQLDYGIYVINQAGD 108
Query: 177 AEFNRGKLLNIGYIEALKIKPFHCFIFHDVDLMPTNPNNIYACTKQPRHMSVAIDTFNYE 236
FNR KLLN+G+ EALK + CF+F DVDL+P N +N Y C QPRH+SVA+D F +
Sbjct: 109 TIFNRAKLLNVGFQEALKDYDYTCFVFSDVDLIPMNDHNAYRCFSQPRHISVAMDKFGFS 168
Query: 237 LPYCTIFGGAIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQRL 278
LPY FGG A+ + QF +NGF N Y+GWG EDDD+F RL
Sbjct: 169 LPYVQYFGGVSALSKQQFLTINGFPNNYWGWGGEDDDIFNRL 210
>pdb|1NHE|B Chain B, Crystal Structure Of Lactose Synthase Complex With Udp
pdb|1NHE|D Chain D, Crystal Structure Of Lactose Synthase Complex With Udp
Length = 286
Score = 183 bits (464), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 82/162 (50%), Positives = 111/162 (68%)
Query: 118 INKGGAWEPTDCIPQHQVAIIVPYMNREGQLKTFLLHIHQFLQKQFISYQIFVIEQRHPA 177
+ GG + P DCI H+VAII+P+ NR+ LK +L ++H LQ+Q + Y I+VI Q +
Sbjct: 49 VKLGGRYTPXDCISPHKVAIIIPFRNRQEHLKYWLYYLHPILQRQQLDYGIYVINQAGES 108
Query: 178 EFNRGKLLNIGYIEALKIKPFHCFIFHDVDLMPTNPNNIYACTKQPRHMSVAIDTFNYEL 237
FNR KLLN+G+ EALK ++CF+F DVDL+P N +N Y C QPRH+SVA D F + L
Sbjct: 109 XFNRAKLLNVGFKEALKDYDYNCFVFSDVDLIPXNDHNTYRCFSQPRHISVAXDKFGFSL 168
Query: 238 PYCTIFGGAIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQRLS 279
PY FGG A+ + QF +NGF N Y+GWG EDDD++ RL+
Sbjct: 169 PYVQYFGGVSALSKQQFLSINGFPNNYWGWGGEDDDIYNRLA 210
>pdb|1PZY|B Chain B, W314a-Beta1,4-Galactosyltransferase-I Complexed With
Alpha-Lactalbumin In The Presence Of
N-Acetylglucosamine, Udp And Manganese
pdb|1PZY|D Chain D, W314a-Beta1,4-Galactosyltransferase-I Complexed With
Alpha-Lactalbumin In The Presence Of
N-Acetylglucosamine, Udp And Manganese
pdb|1PZT|A Chain A, Crystal Structure Of W314a-beta-1,4-galactosyltransferase
(b4gal-t1) Catalytic Domain Without Substrate
Length = 286
Score = 181 bits (460), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 85/184 (46%), Positives = 121/184 (65%), Gaps = 1/184 (0%)
Query: 118 INKGGAWEPTDCIPQHQVAIIVPYMNREGQLKTFLLHIHQFLQKQFISYQIFVIEQRHPA 177
+ GG + P DCI H+VAII+P+ NR+ LK +L ++H LQ+Q + Y I+VI Q +
Sbjct: 49 VKLGGRYTPMDCISPHKVAIIIPFRNRQEHLKYWLYYLHPILQRQQLDYGIYVINQAGES 108
Query: 178 EFNRGKLLNIGYIEALKIKPFHCFIFHDVDLMPTNPNNIYACTKQPRHMSVAIDTFNYEL 237
FNR KLLN+G+ EALK ++CF+F DVDL+P N +N Y C QPRH+SVA+D F + L
Sbjct: 109 MFNRAKLLNVGFKEALKDYDYNCFVFSDVDLIPMNDHNTYRCFSQPRHISVAMDKFGFSL 168
Query: 238 PYCTIFGGAIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQRLS-NYYSICRFSKQVSEYVM 296
PY FGG A+ + QF +NGF N Y+G G EDDD++ RL+ S+ R + + + M
Sbjct: 169 PYVQYFGGVSALSKQQFLSINGFPNNYWGAGGEDDDIYNRLAFRGMSVSRPNAVIGKTRM 228
Query: 297 LNHA 300
+ H+
Sbjct: 229 IRHS 232
>pdb|3LW6|A Chain A, Crystal Structure Of Drosophila
Beta1,4-Galactosyltransferas
Length = 287
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 91/163 (55%), Gaps = 2/163 (1%)
Query: 118 INKGGAWEPTDCIPQHQVAIIVPYMNREGQLKTFLLHIHQFLQKQFISYQIFVIEQRHPA 177
+ GG + P D H++A++VP+ +R +L F+ H+ FL++Q +++ IFV+ Q
Sbjct: 36 VKLGGRYTPMDGASVHKMALLVPFRDRFEELLQFVPHMTAFLKRQGVAHHIFVLNQVDRF 95
Query: 178 EFNRGKLLNIGYIEALKIKPFHCFIFHDVDLMPTNPNNIYACTKQPRHMSVAIDTFNYEL 237
FNR L+N+G+ A + + HDVDL+P N N +Y + +A + +
Sbjct: 96 RFNRASLINVGFQFASDV--YDYIAMHDVDLLPLNDNLLYEYPSSLGPLHIAGPKLHPKY 153
Query: 238 PYCTIFGGAIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQRLSN 280
Y GG + + + F+Q+NG SN Y+GWG EDD+ F R+ +
Sbjct: 154 HYDNFVGGILLVRREHFKQMNGMSNQYWGWGLEDDEFFVRIRD 196
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.139 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,625,142
Number of Sequences: 62578
Number of extensions: 436675
Number of successful extensions: 1077
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1065
Number of HSP's gapped (non-prelim): 11
length of query: 406
length of database: 14,973,337
effective HSP length: 101
effective length of query: 305
effective length of database: 8,652,959
effective search space: 2639152495
effective search space used: 2639152495
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)