Query psy5933
Match_columns 406
No_of_seqs 249 out of 555
Neff 4.6
Searched_HMMs 46136
Date Fri Aug 16 22:13:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5933.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5933hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3916|consensus 100.0 2E-100 5E-105 752.7 25.4 265 84-351 101-370 (372)
2 cd00899 b4GalT Beta-4-Galactos 100.0 2.7E-72 5.9E-77 531.2 21.7 215 132-348 1-219 (219)
3 PF13733 Glyco_transf_7N: N-te 100.0 3E-48 6.6E-53 342.9 12.2 133 88-221 1-135 (136)
4 KOG3917|consensus 100.0 1.4E-40 3.1E-45 315.0 10.9 206 118-337 67-281 (310)
5 PF02709 Glyco_transf_7C: N-te 99.9 2.6E-23 5.7E-28 168.4 5.0 77 224-300 1-78 (78)
6 PF10111 Glyco_tranf_2_2: Glyc 99.8 5.3E-19 1.2E-23 170.7 10.5 148 136-289 1-216 (281)
7 KOG3588|consensus 99.8 9.9E-19 2.1E-23 175.9 9.0 159 134-299 230-439 (494)
8 cd06420 GT2_Chondriotin_Pol_N 99.6 8.5E-15 1.8E-19 128.1 11.8 151 137-294 1-179 (182)
9 PF05679 CHGN: Chondroitin N-a 99.6 6.2E-15 1.3E-19 154.7 12.9 161 132-299 246-469 (499)
10 cd02510 pp-GalNAc-T pp-GalNAc- 99.4 1.9E-12 4E-17 124.8 11.9 146 136-288 1-218 (299)
11 cd04186 GT_2_like_c Subfamily 99.3 2E-11 4.4E-16 103.6 10.3 134 137-289 1-159 (166)
12 cd04184 GT2_RfbC_Mx_like Myxoc 99.3 3E-11 6.5E-16 107.4 11.6 149 134-291 2-197 (202)
13 cd02520 Glucosylceramide_synth 99.2 5.5E-11 1.2E-15 107.3 7.5 138 134-288 2-170 (196)
14 cd06437 CESA_CaSu_A2 Cellulose 99.2 1.9E-10 4.2E-15 105.7 10.5 143 134-288 2-206 (232)
15 cd04185 GT_2_like_b Subfamily 99.1 2.9E-10 6.3E-15 101.7 10.9 140 137-286 1-165 (202)
16 cd02522 GT_2_like_a GT_2_like_ 99.1 3.9E-10 8.4E-15 101.6 11.4 142 135-286 1-178 (221)
17 cd02525 Succinoglycan_BP_ExoA 99.1 5.8E-10 1.3E-14 101.5 12.1 147 134-290 1-203 (249)
18 cd06913 beta3GnTL1_like Beta 1 99.0 1.4E-09 3E-14 99.2 11.0 151 137-296 1-210 (219)
19 PRK11204 N-glycosyltransferase 99.0 1.4E-09 3E-14 109.7 10.6 148 132-289 53-254 (420)
20 cd02526 GT2_RfbF_like RfbF is 99.0 1.7E-09 3.7E-14 98.7 10.2 144 137-288 1-197 (237)
21 cd06433 GT_2_WfgS_like WfgS an 99.0 3.6E-09 7.7E-14 92.4 11.3 144 136-288 1-187 (202)
22 cd06421 CESA_CelA_like CESA_Ce 99.0 4.4E-09 9.6E-14 95.3 12.1 146 134-289 2-205 (234)
23 PRK14583 hmsR N-glycosyltransf 99.0 1.8E-09 4E-14 110.9 10.8 147 132-288 74-274 (444)
24 cd06427 CESA_like_2 CESA_like_ 99.0 4.8E-09 1E-13 97.6 11.0 144 134-288 2-205 (241)
25 cd04195 GT2_AmsE_like GT2_AmsE 99.0 4E-09 8.7E-14 93.9 9.8 147 136-292 1-198 (201)
26 cd06435 CESA_NdvC_like NdvC_li 98.9 4E-09 8.8E-14 96.6 9.2 143 136-289 1-203 (236)
27 TIGR03469 HonB hopene-associat 98.9 3.5E-09 7.5E-14 107.0 9.3 150 133-287 40-254 (384)
28 cd06439 CESA_like_1 CESA_like_ 98.9 2.2E-08 4.7E-13 92.6 11.7 153 125-290 21-224 (251)
29 PF13641 Glyco_tranf_2_3: Glyc 98.8 2.4E-08 5.2E-13 90.8 10.8 144 134-288 2-203 (228)
30 cd04192 GT_2_like_e Subfamily 98.8 2.5E-08 5.5E-13 89.6 10.1 139 137-285 1-199 (229)
31 cd06434 GT2_HAS Hyaluronan syn 98.8 3.7E-08 8E-13 89.8 10.0 145 134-288 1-206 (235)
32 PRK10063 putative glycosyl tra 98.7 2.8E-07 6E-12 88.2 14.5 157 133-296 1-197 (248)
33 TIGR03111 glyc2_xrt_Gpos1 puta 98.7 6.6E-08 1.4E-12 99.6 10.5 146 132-288 48-260 (439)
34 TIGR03472 HpnI hopanoid biosyn 98.7 8E-08 1.7E-12 96.7 10.8 150 130-288 38-246 (373)
35 cd00761 Glyco_tranf_GTA_type G 98.6 2.2E-07 4.8E-12 75.7 9.8 125 137-283 1-153 (156)
36 PRK10018 putative glycosyl tra 98.6 3.9E-07 8.6E-12 89.3 12.8 157 132-299 4-209 (279)
37 TIGR03030 CelA cellulose synth 98.5 4.3E-07 9.3E-12 99.5 10.8 148 129-288 127-351 (713)
38 cd06442 DPM1_like DPM1_like re 98.5 1.4E-06 3E-11 78.7 11.1 143 137-288 1-196 (224)
39 cd06423 CESA_like CESA_like is 98.5 6.9E-07 1.5E-11 74.5 8.1 125 137-271 1-180 (180)
40 PLN02726 dolichyl-phosphate be 98.5 4.4E-07 9.5E-12 85.0 7.6 150 132-288 8-211 (243)
41 COG1216 Predicted glycosyltran 98.4 4.7E-06 1E-10 81.5 14.8 153 132-288 2-213 (305)
42 cd04196 GT_2_like_d Subfamily 98.4 2.9E-06 6.2E-11 75.6 10.7 143 136-288 1-196 (214)
43 TIGR01556 rhamnosyltran L-rham 98.4 3.4E-06 7.4E-11 80.5 11.6 140 141-289 2-195 (281)
44 cd04187 DPM1_like_bac Bacteria 98.4 1.6E-06 3.5E-11 76.5 8.3 125 137-265 1-170 (181)
45 cd04191 Glucan_BSP_ModH Glucan 98.4 1.6E-06 3.5E-11 83.9 8.9 155 135-291 1-227 (254)
46 PRK11498 bcsA cellulose syntha 98.3 2.9E-06 6.4E-11 94.9 9.5 145 132-287 259-461 (852)
47 COG1215 Glycosyltransferases, 98.2 9.9E-06 2.1E-10 81.2 11.0 177 132-327 53-288 (439)
48 PRK10073 putative glycosyl tra 98.2 2.8E-05 6.2E-10 77.5 14.0 153 133-295 6-216 (328)
49 cd04188 DPG_synthase DPG_synth 98.2 1.2E-05 2.7E-10 72.9 10.2 146 137-288 1-201 (211)
50 PRK14716 bacteriophage N4 adso 98.2 1.6E-05 3.5E-10 84.4 12.6 150 132-288 65-282 (504)
51 cd04179 DPM_DPG-synthase_like 98.0 9.8E-06 2.1E-10 70.9 6.4 123 137-264 1-175 (185)
52 COG4092 Predicted glycosyltran 98.0 7.2E-06 1.6E-10 81.1 5.5 113 166-278 62-213 (346)
53 cd06438 EpsO_like EpsO protein 98.0 2.6E-05 5.7E-10 69.5 8.1 75 137-215 1-99 (183)
54 PF00535 Glycos_transf_2: Glyc 97.8 5.1E-05 1.1E-09 63.6 7.0 72 136-214 1-95 (169)
55 cd04190 Chitin_synth_C C-termi 97.8 3.4E-05 7.4E-10 72.8 6.4 142 137-286 1-211 (244)
56 PRK10714 undecaprenyl phosphat 97.8 6.6E-05 1.4E-09 75.0 8.2 78 132-213 5-106 (325)
57 PRK13915 putative glucosyl-3-p 97.6 0.00016 3.5E-09 71.8 7.8 147 131-287 29-237 (306)
58 COG0463 WcaA Glycosyltransfera 97.5 0.00035 7.6E-09 56.9 7.5 75 132-215 2-100 (291)
59 KOG3736|consensus 97.5 6.6E-05 1.4E-09 81.0 4.0 48 241-288 314-362 (578)
60 PTZ00260 dolichyl-phosphate be 97.5 0.0018 3.9E-08 65.0 13.0 153 130-290 67-287 (333)
61 PRK11234 nfrB bacteriophage N4 97.4 0.0011 2.3E-08 73.7 11.9 185 132-323 62-328 (727)
62 cd06436 GlcNAc-1-P_transferase 97.3 0.00093 2E-08 60.5 7.5 75 137-215 1-107 (191)
63 cd02514 GT13_GLCNAC-TI GT13_GL 97.2 0.0013 2.8E-08 66.9 9.0 150 135-298 2-210 (334)
64 PRK05454 glucosyltransferase M 97.2 0.0015 3.3E-08 72.1 10.1 164 127-294 118-355 (691)
65 PRK15489 nfrB bacteriophage N4 97.0 0.0087 1.9E-07 66.4 12.8 149 132-286 70-285 (703)
66 cd02511 Beta4Glucosyltransfera 96.9 0.0022 4.8E-08 59.8 6.7 71 134-214 1-88 (229)
67 KOG3737|consensus 96.1 0.0091 2E-07 62.4 5.8 159 123-288 139-380 (603)
68 PF13712 Glyco_tranf_2_5: Glyc 96.0 0.038 8.2E-07 52.6 8.9 140 135-288 1-191 (217)
69 KOG3738|consensus 96.0 0.011 2.3E-07 61.9 5.5 45 241-285 292-337 (559)
70 KOG2978|consensus 94.5 0.052 1.1E-06 52.1 4.7 82 133-214 3-105 (238)
71 PF13506 Glyco_transf_21: Glyc 93.7 0.065 1.4E-06 49.2 3.6 92 196-288 30-147 (175)
72 PF13632 Glyco_trans_2_3: Glyc 93.4 0.13 2.8E-06 46.0 4.8 47 242-290 72-119 (193)
73 PF03214 RGP: Reversibly glyco 87.7 1.1 2.3E-05 46.3 5.7 72 133-214 8-108 (348)
74 PLN03180 reversibly glycosylat 86.1 1.9 4.2E-05 44.5 6.6 73 130-213 8-109 (346)
75 PRK12465 xylose isomerase; Pro 54.6 9 0.00019 40.8 2.5 37 177-213 82-118 (445)
76 PF13896 Glyco_transf_49: Glyc 53.9 9 0.0002 38.7 2.3 31 179-213 113-143 (317)
77 PF03452 Anp1: Anp1; InterPro 50.1 98 0.0021 31.2 8.8 84 130-214 22-159 (269)
78 KOG2977|consensus 49.5 40 0.00087 34.6 6.0 40 134-173 68-112 (323)
79 COG2115 XylA Xylose isomerase 49.0 24 0.00052 36.9 4.4 69 144-213 39-111 (438)
80 PLN02923 xylose isomerase 46.9 14 0.00029 39.7 2.4 35 178-213 117-152 (478)
81 TIGR02630 xylose_isom_A xylose 44.7 14 0.0003 39.4 2.1 19 195-213 89-107 (434)
82 PRK05474 xylose isomerase; Pro 39.7 19 0.00041 38.5 2.1 18 196-213 91-108 (437)
83 PF09488 Osmo_MPGsynth: Mannos 38.8 96 0.0021 32.8 6.9 61 144-210 92-172 (381)
84 PF11735 CAP59_mtransfer: Cryp 35.6 1.7E+02 0.0038 28.8 7.9 78 133-211 33-125 (241)
85 cd04931 ACT_PAH ACT domain of 31.0 1.3E+02 0.0028 25.1 5.4 30 127-156 7-36 (90)
86 PF03071 GNT-I: GNT-I family; 29.4 1.1E+02 0.0024 32.9 5.8 157 132-297 92-304 (434)
87 PF13087 AAA_12: AAA domain; P 27.3 42 0.00091 30.1 2.0 71 131-205 111-198 (200)
88 PRK14502 bifunctional mannosyl 25.1 2.1E+02 0.0044 32.7 7.1 76 126-212 79-179 (694)
89 PF07312 DUF1459: Protein of u 24.6 26 0.00056 29.5 0.1 12 258-269 53-64 (84)
90 PRK14758 hypothetical protein; 21.5 1.1E+02 0.0024 20.7 2.5 20 29-48 2-21 (27)
91 KOG2547|consensus 20.9 1.9E+02 0.0041 31.0 5.4 145 131-283 83-285 (431)
No 1
>KOG3916|consensus
Probab=100.00 E-value=2.4e-100 Score=752.68 Aligned_cols=265 Identities=42% Similarity=0.760 Sum_probs=257.1
Q ss_pred CCCCCCCCc-CCCcceeecccCCCChHHHHH-hcCCCCCCCeecCCCCcCCceEEEEEeecCchHHHHHHHHHHHHHHhh
Q psy5933 84 HTPLCSIFE-KHSKMFNKNFVFNDTALNILH-TRLNINKGGAWEPTDCIPQHQVAIIVPYMNREGQLKTFLLHIHQFLQK 161 (406)
Q Consensus 84 ~~~~Cp~~~-~l~G~~~~~~~~~~~~~~~v~-~~~~~~~GG~~~P~~C~~~~kVAIIIPyRnR~~hL~~fL~~L~p~L~r 161 (406)
.++.||+.+ .++||+.++|+.+.. +|.++ +||.|.|||+|+|++|+|++|||||||||+|++||+.||.||||+|||
T Consensus 101 ~l~~Cp~~~p~l~g~~~~~~~~~~~-~e~v~~~~P~v~pGG~~~P~dC~ar~kvAIIIPfR~Re~HL~~~l~~LhP~Lqr 179 (372)
T KOG3916|consen 101 ELPPCPEVSPILVGPILVNFSMPSL-LELVQKENPEVRPGGRYRPEDCQARHKVAIIIPFRNREEHLRYLLHHLHPFLQR 179 (372)
T ss_pred cCCCCCCCCcccCCccceecccchH-HHHHHhcCCCcCCCCCcCCCCCCccceeEEEeecccHHHHHHHHHHHhhHHHHh
Confidence 488999996 999999999996654 78888 599999999999999999999999999999999999999999999999
Q ss_pred cccceeEEEEEEccccccchhhhhhHHHHHHhhcCCccEEEEecCCCCCCCCceeeeeCCCcceeEEecccccccCCccc
Q psy5933 162 QFISYQIFVIEQRHPAEFNRGKLLNIGYIEALKIKPFHCFIFHDVDLMPTNPNNIYACTKQPRHMSVAIDTFNYELPYCT 241 (406)
Q Consensus 162 Q~l~y~I~VIeQ~d~g~FNRakLLNvG~~eA~k~~~~Dc~IFhDVDLIp~~d~nlY~c~~~PrHlS~~~dkf~yrlpy~~ 241 (406)
|+++|+||||||.++++|||||+||+||.||+|++.|||||||||||+|+||+|+|.|+.+|||+|+++|||+|+|||..
T Consensus 180 QrL~y~iyVieQ~g~~~FNRakL~NVGf~eAlkd~~wdCfIFHDVDllPenDrNlY~C~~~PRH~sva~dk~gy~LPY~~ 259 (372)
T KOG3916|consen 180 QRLDYRIYVIEQAGNKPFNRAKLLNVGFLEALKDYGWDCFIFHDVDLLPENDRNLYGCPEQPRHMSVALDKFGYRLPYKE 259 (372)
T ss_pred hhhceeEEEEEecCCCcccHHHhhhhHHHHHHHhcCCCEEEEecccccccCCCCccCCCCCCcchhhhhhhccccccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeeecHhhhhhcCCCCCCCccCCCCchhHHHHH-HCCCeEEecccceeeEEeccC--CCcchhHHHHHHHHcCCce
Q psy5933 242 IFGGAIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQRL-SNYYSICRFSKQVSEYVMLNH--AKETEKLERLEKLENGPFR 318 (406)
Q Consensus 242 ~fGGv~a~~kedF~kVNGFdN~fwGWGGEDdDL~~RL-~~Glki~R~~~~~grY~ml~H--k~~~~N~~R~~ll~~~~~r 318 (406)
+||||+|++++||.+||||||.|||||||||||+.|+ .+|++|+||++++|||+||+| |+|++|+.|+++|.+++.|
T Consensus 260 ~FGGVsalt~~qf~kINGFsN~fWGWGGEDDDl~nRv~~ag~~IsRp~~~igrYkMikH~~k~n~~n~~Ry~lL~~tk~r 339 (372)
T KOG3916|consen 260 YFGGVSALTKEQFRKINGFSNAFWGWGGEDDDLWNRVQLAGMKISRPPPEIGRYKMIKHHDKGNEPNPGRYKLLRNTKER 339 (372)
T ss_pred hhCchhhccHHHHHHhcCCCchhcccCCcchHHHHHHHhcCceeecCCCccceeEEeecccccCCCChHHHHHHHhhhhh
Confidence 9999999999999999999999999999999999999 999999999999999999999 7899999999999999999
Q ss_pred eccCcccccccceEEeEEEEeceeeEEEeCCCC
Q psy5933 319 FKTDGLNTLQNNYTVLAGEANGCVTQYKDNSSI 351 (406)
Q Consensus 319 ~~~DGLnsl~~~Y~vl~~~~~~lyT~i~~~~~~ 351 (406)
|..|||||| +|++++++.+||||||+||++.
T Consensus 340 ~~~DGLnsl--~Y~~~~v~~~pLyt~itVDl~~ 370 (372)
T KOG3916|consen 340 QTQDGLNSL--KYQLLKVELDPLYTNITVDLGP 370 (372)
T ss_pred hhhccccce--eeeeeeeecccceEEEEEeccc
Confidence 999999999 9999999999999999666654
No 2
>cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen.
Probab=100.00 E-value=2.7e-72 Score=531.16 Aligned_cols=215 Identities=49% Similarity=0.860 Sum_probs=209.3
Q ss_pred CceEEEEEeecCchHHHHHHHHHHHHHHhhcccceeEEEEEEccccccchhhhhhHHHHHHhhcCCccEEEEecCCCCCC
Q psy5933 132 QHQVAIIVPYMNREGQLKTFLLHIHQFLQKQFISYQIFVIEQRHPAEFNRGKLLNIGYIEALKIKPFHCFIFHDVDLMPT 211 (406)
Q Consensus 132 ~~kVAIIIPyRnR~~hL~~fL~~L~p~L~rQ~l~y~I~VIeQ~d~g~FNRakLLNvG~~eA~k~~~~Dc~IFhDVDLIp~ 211 (406)
+++||||||||+|++||+.||+||||||+||+++|.|+||||.++.+||||+++|+||.+|+++.++||+|||||||+|+
T Consensus 1 ~~~~aiivpyr~R~~~l~~~l~~~~~~L~rq~~~~~i~vi~Q~~~~~FNR~~llNvG~~~a~k~~~~dc~i~hDVDllP~ 80 (219)
T cd00899 1 RHKVAIIVPFRNRFEHLLIFLPHLHPFLQRQQLDYRIFVIEQVGNFRFNRAKLLNVGFLEALKDGDWDCFIFHDVDLLPE 80 (219)
T ss_pred CcceEEEEecCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEEecCCccchhhhhhhHHHHHHhhcCCccEEEEeccccccc
Confidence 58999999999999999999999999999999999999999999999999999999999999988899999999999999
Q ss_pred CCceeeeeCCCcceeEEecccccccCCccccccceeeecHhhhhhcCCCCCCCccCCCCchhHHHHH-HCCCeEEecccc
Q psy5933 212 NPNNIYACTKQPRHMSVAIDTFNYELPYCTIFGGAIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQRL-SNYYSICRFSKQ 290 (406)
Q Consensus 212 ~d~nlY~c~~~PrHlS~~~dkf~yrlpy~~~fGGv~a~~kedF~kVNGFdN~fwGWGGEDdDL~~RL-~~Glki~R~~~~ 290 (406)
++++.|.|+.+|+|+|+++++++|++||..++||++|++++||.+||||||.||||||||+||..|| .+|+++.|++..
T Consensus 81 ~~~~~y~~~~~p~H~s~~~~~~~~~lpy~~~~Gg~~~~~k~~f~~VNGf~n~f~GWGgEDdd~~~Rl~~~g~~~~r~~~~ 160 (219)
T cd00899 81 NDRNLYGCEEGPRHLSVPLDKFHYKLPYKTYFGGVLALTREQFRKVNGFSNAYWGWGGEDDDLYNRIKAAGLKITRPSGD 160 (219)
T ss_pred CccccccCCCCCeEEEEeecccccccCcccccccceeeEHHHHHHhCCcCCcCccCCcchHHHHHHHHHCCCeEEeccCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred eeeEEeccCCC---cchhHHHHHHHHcCCceeccCcccccccceEEeEEEEeceeeEEEeC
Q psy5933 291 VSEYVMLNHAK---ETEKLERLEKLENGPFRFKTDGLNTLQNNYTVLAGEANGCVTQYKDN 348 (406)
Q Consensus 291 ~grY~ml~Hk~---~~~N~~R~~ll~~~~~r~~~DGLnsl~~~Y~vl~~~~~~lyT~i~~~ 348 (406)
++||.||+|++ +++|++|++++..++++|+.|||||| +|++++++..||||||+|+
T Consensus 161 ~~~~~hL~H~~~~r~~~N~~r~~~l~~~~~~~~~dGLnsl--~Y~v~~~~~~pl~t~i~vd 219 (219)
T cd00899 161 TGRYKMIRHIHDKRNRDNPNRFALLQNSRERDHSDGLNSL--KYKVLSIELAPLYTNILVD 219 (219)
T ss_pred ccceeeeecCCCcccccCHHHHHHHHhhCeEeccCCccce--EEEEEEEeccccEEEEEeC
Confidence 99999999954 47899999999999999999999999 9999999999999999764
No 3
>PF13733 Glyco_transf_7N: N-terminal region of glycosyl transferase group 7; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=100.00 E-value=3e-48 Score=342.87 Aligned_cols=133 Identities=47% Similarity=0.923 Sum_probs=101.7
Q ss_pred CCCCc-CCCcceeecccCCCChHHHHH-hcCCCCCCCeecCCCCcCCceEEEEEeecCchHHHHHHHHHHHHHHhhcccc
Q psy5933 88 CSIFE-KHSKMFNKNFVFNDTALNILH-TRLNINKGGAWEPTDCIPQHQVAIIVPYMNREGQLKTFLLHIHQFLQKQFIS 165 (406)
Q Consensus 88 Cp~~~-~l~G~~~~~~~~~~~~~~~v~-~~~~~~~GG~~~P~~C~~~~kVAIIIPyRnR~~hL~~fL~~L~p~L~rQ~l~ 165 (406)
||+.| .|+|++.|+|+..++ ++++. +++.+++||+|+|++|+++++||||||||||++||+.||++|||||+||+++
T Consensus 1 CP~~~P~l~G~~~v~~~~~~~-~~~~~~~~~~~~~gG~~~p~~C~~~~kvAiIIPyRdR~~hL~~fl~~l~~~L~rQ~~~ 79 (136)
T PF13733_consen 1 CPEVSPNLVGPLEVNFKEPPS-FEEIEKNNPHVQPGGHWKPPDCKPRHKVAIIIPYRDREEHLRIFLPHLHPFLQRQQLD 79 (136)
T ss_dssp --SS-TT---B----SSS----HHHHHHHSTTSBTTTEE--SSSB-S-EEEEEEEESS-HHHHHHHHHHHHHHHHHTT-E
T ss_pred CCCCCCCcccceEEEeCCCCC-HHHHHHhCCCccccceecCCccccccceEEEEEeCCHHHHHHHHHHHHHHHHhhCcce
Confidence 99996 999999999999887 99999 8999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEccccccchhhhhhHHHHHHhhcCCccEEEEecCCCCCCCCceeeeeCC
Q psy5933 166 YQIFVIEQRHPAEFNRGKLLNIGYIEALKIKPFHCFIFHDVDLMPTNPNNIYACTK 221 (406)
Q Consensus 166 y~I~VIeQ~d~g~FNRakLLNvG~~eA~k~~~~Dc~IFhDVDLIp~~d~nlY~c~~ 221 (406)
|+||||||.|+++||||+|+|+||.+|+++.+|||+|||||||||++|+|+|.|++
T Consensus 80 y~I~vieQ~~~~~FNRg~L~NvGf~eA~~~~~~dc~ifHDVDllP~~~~n~Y~C~~ 135 (136)
T PF13733_consen 80 YRIFVIEQVDNGPFNRGKLMNVGFLEALKDDDFDCFIFHDVDLLPENDRNLYTCDE 135 (136)
T ss_dssp EEEEEEEE-SSS---HHHHHHHHHHHHHHHS--SEEEEE-TTEEESBTTS-SS---
T ss_pred EEEEEEeeccCCCCchhhhhhHHHHHHhhccCCCEEEEecccccccCCCceeeCCC
Confidence 99999999999999999999999999999889999999999999999999999975
No 4
>KOG3917|consensus
Probab=100.00 E-value=1.4e-40 Score=314.97 Aligned_cols=206 Identities=30% Similarity=0.581 Sum_probs=175.4
Q ss_pred CCCCCeecCCCCcCCceEEEEEeecCchHHHHHHHHHHHHHHhhcccceeEEEEEEccccccchhhhhhHHHHHHhhcCC
Q psy5933 118 INKGGAWEPTDCIPQHQVAIIVPYMNREGQLKTFLLHIHQFLQKQFISYQIFVIEQRHPAEFNRGKLLNIGYIEALKIKP 197 (406)
Q Consensus 118 ~~~GG~~~P~~C~~~~kVAIIIPyRnR~~hL~~fL~~L~p~L~rQ~l~y~I~VIeQ~d~g~FNRakLLNvG~~eA~k~~~ 197 (406)
.+.|..| +|+|++||||+|.|.|..|.+||..||.||++...|+|++|.|.-.||||.+.|+||.+|.. .
T Consensus 67 ~~~~aS~--------HklavlVPfRdRfEELl~FvPHM~~FL~rq~v~HHI~vlNQvD~fRFNRAsLINVGf~eas~--~ 136 (310)
T KOG3917|consen 67 LQTGASY--------HKLAVLVPFRDRFEELLEFVPHMSKFLHRQNVSHHILVLNQVDPFRFNRASLINVGFNEASR--L 136 (310)
T ss_pred cccCccc--------eeEEEEechHHHHHHHHHhhHHHHHHHhhcCcceEEEEeeccCcceechhhheecchhhhcc--h
Confidence 4456565 89999999999999999999999999999999999999999999999999999999999965 6
Q ss_pred ccEEEEecCCCCCCCCceeeeeCC--CcceeEEecccccccCCccccccceeeecHhhhhhcCCCCCCCccCCCCchhHH
Q psy5933 198 FHCFIFHDVDLMPTNPNNIYACTK--QPRHMSVAIDTFNYELPYCTIFGGAIAMLQHQFRQVNGFSNLYFGWGAEDDDLF 275 (406)
Q Consensus 198 ~Dc~IFhDVDLIp~~d~nlY~c~~--~PrHlS~~~dkf~yrlpy~~~fGGv~a~~kedF~kVNGFdN~fwGWGGEDdDL~ 275 (406)
+||+.+||||++|.++...|..++ .|+|++.. +...+..|..+.||++.+++++|.+.||+||.|||||.|||||+
T Consensus 137 ~DYiaMhDVDLLPlN~el~Y~fP~~~gp~HiasP--~lHPkYHY~~fvGGILll~~~hyk~~NGMSN~yWGWGlEDDEFy 214 (310)
T KOG3917|consen 137 CDYIAMHDVDLLPLNPELPYDFPGIGGPRHIASP--QLHPKYHYEKFVGGILLLTLKHYKKLNGMSNKYWGWGLEDDEFY 214 (310)
T ss_pred hceeeecccccccCCCCCCCCCCccCCcccccCc--ccCchhhhhhhcceeEEeeHHHHHHhcCccccccccCcccchhh
Confidence 999999999999999999999884 79998643 33334468999999999999999999999999999999999999
Q ss_pred HHH-HCCCeEEeccc-ceeeEEeccCCCcchhHHH-----HHHHHcCCceeccCcccccccceEEeEEE
Q psy5933 276 QRL-SNYYSICRFSK-QVSEYVMLNHAKETEKLER-----LEKLENGPFRFKTDGLNTLQNNYTVLAGE 337 (406)
Q Consensus 276 ~RL-~~Glki~R~~~-~~grY~ml~Hk~~~~N~~R-----~~ll~~~~~r~~~DGLnsl~~~Y~vl~~~ 337 (406)
.|+ .+|+++.||+. +.|.-.++.|-+++...+| +++-..+++|-...||+++ +|.+.+++
T Consensus 215 ~RI~dagLqltRpsgi~Tg~~~TFrHiH~p~~RKRD~k~~~nQke~~rKrDh~~GL~~V--kY~i~sr~ 281 (310)
T KOG3917|consen 215 LRIIDAGLQLTRPSGISTGSSNTFRHIHGPKHRKRDKKNDKNQKEIKRKRDHVSGLHDV--KYLIDSRQ 281 (310)
T ss_pred heeccccceEecccCcccCccchhhhhcChhhhhhhhhhhhhHHHHHhhhcccccccce--eeeeeeee
Confidence 999 99999999985 3343356777443332222 2333445567788899999 99999877
No 5
>PF02709 Glyco_transf_7C: N-terminal domain of galactosyltransferase; InterPro: IPR003859 This is a family of galactosyltransferases from a wide range of metazoa with three related galactosyltransferase activities; all three of which are possessed by one sequence in some cases. The three functions are N-acetyllactosamine synthase (2.4.1.90 from EC); beta-N-acetylglucosaminyl-glycopeptide beta-1,4-galactosyltransferase (2.4.1.38 from EC); and lactose synthase (2.4.1.22 from EC). Note that N-acetyllactosamine synthase is a component of lactose synthase along with alpha-lactalbumin, in the absence of alpha-lactalbumin N-acetyllactosamine synthase is used.; GO: 0016757 transferase activity, transferring glycosyl groups, 0005975 carbohydrate metabolic process; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=99.88 E-value=2.6e-23 Score=168.35 Aligned_cols=77 Identities=43% Similarity=0.901 Sum_probs=64.2
Q ss_pred ceeEEecccccccCCccccccceeeecHhhhhhcCCCCCCCccCCCCchhHHHHH-HCCCeEEecccceeeEEeccCC
Q psy5933 224 RHMSVAIDTFNYELPYCTIFGGAIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQRL-SNYYSICRFSKQVSEYVMLNHA 300 (406)
Q Consensus 224 rHlS~~~dkf~yrlpy~~~fGGv~a~~kedF~kVNGFdN~fwGWGGEDdDL~~RL-~~Glki~R~~~~~grY~ml~Hk 300 (406)
||++..+++++++.+|..++||++++++++|.+||||||.|||||+||+||..|+ .+|+++.|++...++|++++||
T Consensus 1 rh~~~~~~~~~~~~~~~~~~Gg~~~~~~~~f~~vnGfde~f~gWG~ED~Dl~~Rl~~~g~~~~~~~~~~~~yh~~~H~ 78 (78)
T PF02709_consen 1 RHLSPSIDEFNYKYPYPNFFGGVFAISREDFEKVNGFDERFWGWGGEDDDLYNRLWKAGLKIVRVPGSIGRYHLWKHK 78 (78)
T ss_dssp EEEETEEGGGTSS-SSTT---SEEEEEHHHHHHTTSS-SS-TSCSSHHHHHHHHHHHTT---B-SSTTTTEEEEEET-
T ss_pred CCeeeccCcccCcCcCCCeeEEEEEEeHHHHHHcCCCCccccccCccHHHHHHHHHHcCCeEEecCCceEEEEEeecC
Confidence 7999999999999999999999999999999999999999999999999999999 9999999999999999988885
No 6
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=99.78 E-value=5.3e-19 Score=170.66 Aligned_cols=148 Identities=27% Similarity=0.419 Sum_probs=101.0
Q ss_pred EEEEeecCchH------HHHHHHHHHHHHHhhcccceeEEEEE-------------------------Ec-cccccchhh
Q psy5933 136 AIIVPYMNREG------QLKTFLLHIHQFLQKQFISYQIFVIE-------------------------QR-HPAEFNRGK 183 (406)
Q Consensus 136 AIIIPyRnR~~------hL~~fL~~L~p~L~rQ~l~y~I~VIe-------------------------Q~-d~g~FNRak 183 (406)
+||||+|+|.+ .|+.+|..+..+ ...-+++|+|++ .. .+..|++|+
T Consensus 1 SiIIPv~~~~~~~~i~~~l~~~l~~l~~~--~~~~~~eiIvvd~~s~~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a~ 78 (281)
T PF10111_consen 1 SIIIPVRNRSERPDILERLRNCLESLSQF--QSDPDFEIIVVDDGSSDEFDEELKKLCEKNGFIRYIRHEDNGEPFSRAK 78 (281)
T ss_pred CEEEEecCCccchHHHHHHHHHHHHHHhc--CCCCCEEEEEEECCCchhHHHHHHHHHhccCceEEEEcCCCCCCcCHHH
Confidence 59999999984 455556655421 112345555553 12 234799999
Q ss_pred hhhHHHHHHhhcCCccEEEEecCCCCCCCCceee--e----eCCCcceeEE-------------ecccc-----------
Q psy5933 184 LLNIGYIEALKIKPFHCFIFHDVDLMPTNPNNIY--A----CTKQPRHMSV-------------AIDTF----------- 233 (406)
Q Consensus 184 LLNvG~~eA~k~~~~Dc~IFhDVDLIp~~d~nlY--~----c~~~PrHlS~-------------~~dkf----------- 233 (406)
++|.|++.| ..|+++|.|+|+++.++.... . +...+..+.. .....
T Consensus 79 arN~g~~~A----~~d~l~flD~D~i~~~~~i~~~~~~~~~l~~~~~~~~~~p~~yl~~~~~~~~~~~~~~~~~~~~~~~ 154 (281)
T PF10111_consen 79 ARNIGAKYA----RGDYLIFLDADCIPSPDFIEKLLNHVKKLDKNPNAFLVYPCLYLSEEGSEKFYSQFKNLWDHEFLES 154 (281)
T ss_pred HHHHHHHHc----CCCEEEEEcCCeeeCHHHHHHHHHHHHHHhcCCCceEEEeeeeccchhhHHHhhcchhcchHHHHHH
Confidence 999999998 579999999999999885311 1 1111111100 00000
Q ss_pred --ccc---CCccccccceeeecHhhhhhcCCCCCCCccCCCCchhHHHHH-HCCCeEEeccc
Q psy5933 234 --NYE---LPYCTIFGGAIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQRL-SNYYSICRFSK 289 (406)
Q Consensus 234 --~yr---lpy~~~fGGv~a~~kedF~kVNGFdN~fwGWGGEDdDL~~RL-~~Glki~R~~~ 289 (406)
..+ ..+....||++++.+++|.++|||||+|.|||+||.||..|| ..|..+.+++.
T Consensus 155 ~~~~~~~~~~~~~~~s~~~~i~r~~f~~iGGfDE~f~G~G~ED~D~~~RL~~~~~~~~~~~~ 216 (281)
T PF10111_consen 155 FISGKNSLWEFIAFASSCFLINREDFLEIGGFDERFRGWGYEDIDFGYRLKKAGYKFKRSPD 216 (281)
T ss_pred HhhccccccccccccceEEEEEHHHHHHhCCCCccccCCCcchHHHHHHHHHcCCcEecChH
Confidence 000 012345679999999999999999999999999999999999 99998877653
No 7
>KOG3588|consensus
Probab=99.76 E-value=9.9e-19 Score=175.89 Aligned_cols=159 Identities=23% Similarity=0.339 Sum_probs=119.5
Q ss_pred eEEEEEeecCchHHHHHHHHHHHHHHhhcccceeEEEE------------------------EEccccccchhhhhhHHH
Q psy5933 134 QVAIIVPYMNREGQLKTFLLHIHQFLQKQFISYQIFVI------------------------EQRHPAEFNRGKLLNIGY 189 (406)
Q Consensus 134 kVAIIIPyRnR~~hL~~fL~~L~p~L~rQ~l~y~I~VI------------------------eQ~d~g~FNRakLLNvG~ 189 (406)
.+.+|+|.++|...+..|+..+. .++.+.+...+..+ .-..++.|+||++|-+|+
T Consensus 230 gih~i~pl~gr~~~f~rf~q~~c-~~~d~~l~l~vv~f~~se~e~ak~e~~tslra~f~~~q~l~lngeFSRa~aL~vGA 308 (494)
T KOG3588|consen 230 GIHMIMPLRGRAAIFARFAQSIC-ARGDDRLALSVVYFGYSEDEMAKRETITSLRASFIPVQFLGLNGEFSRAKALMVGA 308 (494)
T ss_pred CceEEEeccchHHHhhhhhHHHh-ccCCCceEEEEEEecCCChHHHhhhHHHHHhhcCCceEEecccchhhhhHHHHhhH
Confidence 49999999999999999999443 23334444333332 223467899999999998
Q ss_pred HHHhhcCCccEEEEecCCCCCCCCceeeeeCC---------CcceeEEecccccc----------------cCCcccccc
Q psy5933 190 IEALKIKPFHCFIFHDVDLMPTNPNNIYACTK---------QPRHMSVAIDTFNY----------------ELPYCTIFG 244 (406)
Q Consensus 190 ~eA~k~~~~Dc~IFhDVDLIp~~d~nlY~c~~---------~PrHlS~~~dkf~y----------------rlpy~~~fG 244 (406)
..-. .--.++|+|||+++..++ +-+|.. .|..+|....+.-| ..-||+-||
T Consensus 309 e~~~---~nvLLFfcDVDi~FT~ef-L~rcr~Nt~~gkqiyfPivFS~ynp~ivy~~~~~~p~e~~~~~~~~tGfwRdfG 384 (494)
T KOG3588|consen 309 ETLN---ANVLLFFCDVDIYFTTEF-LNRCRLNTILGKQIYFPIVFSQYNPEIVYEQDKPLPAEQQLVIKKDTGFWRDFG 384 (494)
T ss_pred HHhc---cceeEEEeccceeehHHH-HHHHhhccCCCceEEEEEEEeecCcceeecCCCCCchhHheeeccccccccccC
Confidence 8652 334799999999998887 345542 35555533222211 123678899
Q ss_pred -ceeeecHhhhhhcCCCCCCCccCCCCchhHHHHH-HCCCeEEecccceeeEEeccC
Q psy5933 245 -GAIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQRL-SNYYSICRFSKQVSEYVMLNH 299 (406)
Q Consensus 245 -Gv~a~~kedF~kVNGFdN~fwGWGGEDdDL~~RL-~~Glki~R~~~~~grY~ml~H 299 (406)
|+.+++|.||++|+|||....||||||+||+... .+|+++.|.+ ..|-+ +++|
T Consensus 385 fGmtc~yrsd~~~vgGFD~~I~GWG~EDV~Ly~K~v~~~l~viR~p-~pGl~-H~~H 439 (494)
T KOG3588|consen 385 FGMTCQYRSDFLTVGGFDMEIKGWGGEDVDLYRKYVHSGLKVIRTP-EPGLF-HLWH 439 (494)
T ss_pred CceeEEeeccceeecCcceeeeccCcchHHHHHHHHhcCcEEEecC-CCceE-Eeec
Confidence 9999999999999999999999999999999999 9999999976 44666 8899
No 8
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=99.60 E-value=8.5e-15 Score=128.07 Aligned_cols=151 Identities=21% Similarity=0.334 Sum_probs=105.0
Q ss_pred EEEeecCchHHHHHHHHHHHHHHhhcccceeEEEEEEcc-------------------------ccccchhhhhhHHHHH
Q psy5933 137 IIVPYMNREGQLKTFLLHIHQFLQKQFISYQIFVIEQRH-------------------------PAEFNRGKLLNIGYIE 191 (406)
Q Consensus 137 IIIPyRnR~~hL~~fL~~L~p~L~rQ~l~y~I~VIeQ~d-------------------------~g~FNRakLLNvG~~e 191 (406)
||||.+|+.+.|+.+|..+.. +....++|+|+.... +..|.++..+|.|+..
T Consensus 1 ivip~~n~~~~l~~~l~sl~~---q~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~~ 77 (182)
T cd06420 1 LIITTYNRPEALELVLKSVLN---QSILPFEVIIADDGSTEETKELIEEFKSQFPIPIKHVWQEDEGFRKAKIRNKAIAA 77 (182)
T ss_pred CEEeecCChHHHHHHHHHHHh---ccCCCCEEEEEeCCCchhHHHHHHHHHhhcCCceEEEEcCCcchhHHHHHHHHHHH
Confidence 799999999999999998853 223456777664211 2236788899999998
Q ss_pred HhhcCCccEEEEecCCCCCCCCcee--eeeCCCcceeEEecccccccCCccccccceeeecHhhhhhcCCCCCCCccCCC
Q psy5933 192 ALKIKPFHCFIFHDVDLMPTNPNNI--YACTKQPRHMSVAIDTFNYELPYCTIFGGAIAMLQHQFRQVNGFSNLYFGWGA 269 (406)
Q Consensus 192 A~k~~~~Dc~IFhDVDLIp~~d~nl--Y~c~~~PrHlS~~~dkf~yrlpy~~~fGGv~a~~kedF~kVNGFdN~fwGWGG 269 (406)
| .+|+++|.|.|.+|.++... ...-.....+........-........||.++++++.|.+++||++.|.+||+
T Consensus 78 a----~g~~i~~lD~D~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ggf~~~~~~~~~ 153 (182)
T cd06420 78 A----KGDYLIFIDGDCIPHPDFIADHIELAEPGVFLSGSRVLLNEKLTERGIRGCNMSFWKKDLLAVNGFDEEFTGWGG 153 (182)
T ss_pred h----cCCEEEEEcCCcccCHHHHHHHHHHhCCCcEEecceeecccccceeEeccceEEEEHHHHHHhCCCCcccccCCc
Confidence 7 57999999999999887521 11111111111000000000011345689999999999999999999999999
Q ss_pred CchhHHHHH-HCCCeEEecccceeeE
Q psy5933 270 EDDDLFQRL-SNYYSICRFSKQVSEY 294 (406)
Q Consensus 270 EDdDL~~RL-~~Glki~R~~~~~grY 294 (406)
||.||..|+ .+|++..+....+..|
T Consensus 154 eD~~l~~r~~~~g~~~~~~~~~~~~~ 179 (182)
T cd06420 154 EDSELVARLLNSGIKFRKLKFAAIVF 179 (182)
T ss_pred chHHHHHHHHHcCCcEEEecccceee
Confidence 999999999 9998888765544444
No 9
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=99.60 E-value=6.2e-15 Score=154.70 Aligned_cols=161 Identities=25% Similarity=0.430 Sum_probs=119.4
Q ss_pred CceEEEEEeecCc-hHHHHHHHHHHHHH-Hhhcc-ccee-------------------------------EEEEEEcccc
Q psy5933 132 QHQVAIIVPYMNR-EGQLKTFLLHIHQF-LQKQF-ISYQ-------------------------------IFVIEQRHPA 177 (406)
Q Consensus 132 ~~kVAIIIPyRnR-~~hL~~fL~~L~p~-L~rQ~-l~y~-------------------------------I~VIeQ~d~g 177 (406)
..+|.||||..+| .+.++.||..+... |+.++ ..-- |-+|.-. .+
T Consensus 246 ~~~V~iIvPl~~r~~~~~~~Fl~~~~~~~l~~~~~~~L~vV~~~~~~~~~~~~~ik~~l~~l~~k~~~~~i~~i~~~-~~ 324 (499)
T PF05679_consen 246 STRVHIIVPLSGREADWFRRFLENFEKVCLETDDNVFLTVVLFYDPSDSDSISQIKELLEELERKYPFSRIKWISVK-TG 324 (499)
T ss_pred CCEEEEEEEecCccHHHHHHHHHHHHHHhcccCCceEEEEEEecCcccchhHHHHHHHHHHHHHhCCccceEEEEec-CC
Confidence 4689999999999 99999999999875 33322 1111 2222222 36
Q ss_pred ccchhhhhhHHHHHHhhcCCccEEEEecCCCCCCCCceeeeeCC---------CcceeEEecccccc------------c
Q psy5933 178 EFNRGKLLNIGYIEALKIKPFHCFIFHDVDLMPTNPNNIYACTK---------QPRHMSVAIDTFNY------------E 236 (406)
Q Consensus 178 ~FNRakLLNvG~~eA~k~~~~Dc~IFhDVDLIp~~d~nlY~c~~---------~PrHlS~~~dkf~y------------r 236 (406)
+|+||++|++|+... ..-+.++|+||||....++ +-+|.. .|.++|..-.+..| .
T Consensus 325 ~fsr~~~Ld~g~~~~---~~d~L~f~~Dvd~~f~~~f-L~rcR~nti~g~qvy~PI~Fs~y~p~~~~~~~~~~~~~~~i~ 400 (499)
T PF05679_consen 325 EFSRGAALDVGAKKF---PPDSLLFFCDVDMVFTSDF-LNRCRMNTIPGKQVYFPIVFSQYNPDIVYAGKPPEPDQFDIS 400 (499)
T ss_pred CccHHHHHHhhcccC---CCCcEEEEEeCCcccCHHH-HHHHHHhhhcCcEEEEeeeccccCCcccccCCCCccccCccC
Confidence 799999999998843 3567999999999999987 455542 47777633222211 1
Q ss_pred --CCcccccc-ceeeecHhhhhhc--CCCCCCCccCCCCchhHHHHH-HCC--CeEEecccceeeEEeccC
Q psy5933 237 --LPYCTIFG-GAIAMLQHQFRQV--NGFSNLYFGWGAEDDDLFQRL-SNY--YSICRFSKQVSEYVMLNH 299 (406)
Q Consensus 237 --lpy~~~fG-Gv~a~~kedF~kV--NGFdN~fwGWGGEDdDL~~RL-~~G--lki~R~~~~~grY~ml~H 299 (406)
.-|+..+| |++|++++||.++ +||++...|||+||.||+.++ .+| +.|.|.... |=+ +++|
T Consensus 401 ~~~G~w~~~gfg~~~~YksDy~~~~~~~~~~~~~gwg~ED~~l~~~~l~~~~~l~V~Ra~ep-~L~-h~yh 469 (499)
T PF05679_consen 401 KDTGFWRRFGFGMVCFYKSDYMRIRGGGFDLSIRGWGGEDVDLYDKFLKSGHKLHVFRAVEP-GLV-HRYH 469 (499)
T ss_pred CCCCccccCCCceEEEEhhhhhhhcccccccccccccccHHHHHHHHHhCCCceEEEEccCC-CeE-EEec
Confidence 12567788 9999999999999 999999999999999999999 998 999997532 222 4566
No 10
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=99.40 E-value=1.9e-12 Score=124.77 Aligned_cols=146 Identities=16% Similarity=0.172 Sum_probs=101.8
Q ss_pred EEEEeecCch-HHHHHHHHHHHHHHhhcc--cceeEEEEEEcc-------------------------ccccchhhhhhH
Q psy5933 136 AIIVPYMNRE-GQLKTFLLHIHQFLQKQF--ISYQIFVIEQRH-------------------------PAEFNRGKLLNI 187 (406)
Q Consensus 136 AIIIPyRnR~-~hL~~fL~~L~p~L~rQ~--l~y~I~VIeQ~d-------------------------~g~FNRakLLNv 187 (406)
+||||.||+. +.|..+|..+. .+.. ..++|+||.... +..++.++++|.
T Consensus 1 SIIIp~~N~~~~~l~~~l~Sl~---~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~~~~~~v~vi~~~~n~G~~~a~N~ 77 (299)
T cd02510 1 SVIIIFHNEALSTLLRTVHSVI---NRTPPELLKEIILVDDFSDKPELKLLLEEYYKKYLPKVKVLRLKKREGLIRARIA 77 (299)
T ss_pred CEEEEEecCcHHHHHHHHHHHH---hcCchhcCCEEEEEECCCCchHHHHHHHHHHhhcCCcEEEEEcCCCCCHHHHHHH
Confidence 6999999999 99999988874 2221 246888885321 124677889999
Q ss_pred HHHHHhhcCCccEEEEecCCCCCCCCce------------eeeeCC-------CcceeEEe------cc-c--cccc---
Q psy5933 188 GYIEALKIKPFHCFIFHDVDLMPTNPNN------------IYACTK-------QPRHMSVA------ID-T--FNYE--- 236 (406)
Q Consensus 188 G~~eA~k~~~~Dc~IFhDVDLIp~~d~n------------lY~c~~-------~PrHlS~~------~d-k--f~yr--- 236 (406)
|++.| .+|+++|.|.|+.+.++.. ...|+. ...+.... .+ . +.+.
T Consensus 78 g~~~A----~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (299)
T cd02510 78 GARAA----TGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLP 153 (299)
T ss_pred HHHHc----cCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccceeccccCC
Confidence 99988 5799999999999976632 111211 00000000 00 0 0000
Q ss_pred ----------CC--ccccccceeeecHhhhhhcCCCCCCCccCCCCchhHHHHH-HCCCeEEecc
Q psy5933 237 ----------LP--YCTIFGGAIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQRL-SNYYSICRFS 288 (406)
Q Consensus 237 ----------lp--y~~~fGGv~a~~kedF~kVNGFdN~fwGWGGEDdDL~~RL-~~Glki~R~~ 288 (406)
.| ....-||.++++++-|.++||||+.|..||+||.||..|+ .+|.++.-.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~vGgfDe~~~~~~~ED~Dl~~R~~~~G~~i~~~p 218 (299)
T cd02510 154 EEERRRESPTAPIRSPTMAGGLFAIDREWFLELGGYDEGMDIWGGENLELSFKVWQCGGSIEIVP 218 (299)
T ss_pred HHHhhhcCCCCCccCccccceeeEEEHHHHHHhCCCCCcccccCchhHHHHHHHHHcCCeEEEee
Confidence 01 1234589999999999999999999999999999999999 9999987654
No 11
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.29 E-value=2e-11 Score=103.59 Aligned_cols=134 Identities=21% Similarity=0.221 Sum_probs=100.8
Q ss_pred EEEeecCchHHHHHHHHHHHHHHhhcc-cceeEEEEEEccc--------------------cccchhhhhhHHHHHHhhc
Q psy5933 137 IIVPYMNREGQLKTFLLHIHQFLQKQF-ISYQIFVIEQRHP--------------------AEFNRGKLLNIGYIEALKI 195 (406)
Q Consensus 137 IIIPyRnR~~hL~~fL~~L~p~L~rQ~-l~y~I~VIeQ~d~--------------------g~FNRakLLNvG~~eA~k~ 195 (406)
||||.+||.+.|..++..+. +|. ..++|+|+..... ...+.+.++|.|+..|
T Consensus 1 vii~~~~~~~~l~~~l~sl~----~~~~~~~~iiivdd~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~n~~~~~~--- 73 (166)
T cd04186 1 IIIVNYNSLEYLKACLDSLL----AQTYPDFEVIVVDNASTDGSVELLRELFPEVRLIRNGENLGFGAGNNQGIREA--- 73 (166)
T ss_pred CEEEecCCHHHHHHHHHHHH----hccCCCeEEEEEECCCCchHHHHHHHhCCCeEEEecCCCcChHHHhhHHHhhC---
Confidence 69999999999999999884 232 4567777653221 2366788999999987
Q ss_pred CCccEEEEecCCCCCCCCceeeee---CCCcceeEEecccccccCCccccccceeeecHhhhhhcCCCCCCCccCCCCch
Q psy5933 196 KPFHCFIFHDVDLMPTNPNNIYAC---TKQPRHMSVAIDTFNYELPYCTIFGGAIAMLQHQFRQVNGFSNLYFGWGAEDD 272 (406)
Q Consensus 196 ~~~Dc~IFhDVDLIp~~d~nlY~c---~~~PrHlS~~~dkf~yrlpy~~~fGGv~a~~kedF~kVNGFdN~fwGWGGEDd 272 (406)
++|+++|.|.|..+.++...... ...|....+.. ...|+.++++++.|.+++||++.|-. ++||.
T Consensus 74 -~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~eD~ 141 (166)
T cd04186 74 -KGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGP----------KVSGAFLLVRREVFEEVGGFDEDFFL-YYEDV 141 (166)
T ss_pred -CCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEc----------cCceeeEeeeHHHHHHcCCCChhhhc-cccHH
Confidence 68999999999999887531111 12222221110 17789999999999999999999887 77999
Q ss_pred hHHHHH-HCCCeEEeccc
Q psy5933 273 DLFQRL-SNYYSICRFSK 289 (406)
Q Consensus 273 DL~~RL-~~Glki~R~~~ 289 (406)
||..|+ ..|+++.-.+.
T Consensus 142 ~~~~~~~~~g~~i~~~~~ 159 (166)
T cd04186 142 DLCLRARLAGYRVLYVPQ 159 (166)
T ss_pred HHHHHHHHcCCeEEEccc
Confidence 999999 99999887653
No 12
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.28 E-value=3e-11 Score=107.35 Aligned_cols=149 Identities=14% Similarity=0.174 Sum_probs=99.8
Q ss_pred eEEEEEeecCch-HHHHHHHHHHHHHHhhcccceeEEEEEEccc------------------------cccchhhhhhHH
Q psy5933 134 QVAIIVPYMNRE-GQLKTFLLHIHQFLQKQFISYQIFVIEQRHP------------------------AEFNRGKLLNIG 188 (406)
Q Consensus 134 kVAIIIPyRnR~-~hL~~fL~~L~p~L~rQ~l~y~I~VIeQ~d~------------------------g~FNRakLLNvG 188 (406)
+++||||.+|+. +.|..+|..+. .+....++|+||..... ..-..+.++|.|
T Consensus 2 ~vsiii~~~n~~~~~l~~~l~sl~---~q~~~~~eiivvd~gs~d~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g 78 (202)
T cd04184 2 LISIVMPVYNTPEKYLREAIESVR---AQTYPNWELCIADDASTDPEVKRVLKKYAAQDPRIKVVFREENGGISAATNSA 78 (202)
T ss_pred eEEEEEecccCcHHHHHHHHHHHH---hCcCCCeEEEEEeCCCCChHHHHHHHHHHhcCCCEEEEEcccCCCHHHHHHHH
Confidence 699999999999 99999998874 33334578888753321 122456788999
Q ss_pred HHHHhhcCCccEEEEecCCCCCCCCcee-----e-eeCC------CcceeE--EecccccccCCc-------ccccccee
Q psy5933 189 YIEALKIKPFHCFIFHDVDLMPTNPNNI-----Y-ACTK------QPRHMS--VAIDTFNYELPY-------CTIFGGAI 247 (406)
Q Consensus 189 ~~eA~k~~~~Dc~IFhDVDLIp~~d~nl-----Y-~c~~------~PrHlS--~~~dkf~yrlpy-------~~~fGGv~ 247 (406)
++.| ..|+++|.|.|..+.++..- . ..+. ...... ....+..+..++ ....|+.+
T Consensus 79 ~~~a----~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (202)
T cd04184 79 LELA----TGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYSDEDKIDEGGKRSEPFFKPDWSPDLLLSQNYIGHLL 154 (202)
T ss_pred HHhh----cCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEccHHhccCCCCEeccccCCCCCHHHhhhcCCccceE
Confidence 9887 56999999999999887420 1 1111 000000 000000111111 13456777
Q ss_pred eecHhhhhhcCCCCCCCccCCCCchhHHHHH-HCCCeEEecccce
Q psy5933 248 AMLQHQFRQVNGFSNLYFGWGAEDDDLFQRL-SNYYSICRFSKQV 291 (406)
Q Consensus 248 a~~kedF~kVNGFdN~fwGWGGEDdDL~~RL-~~Glki~R~~~~~ 291 (406)
+++++-|.+++||++.|. |+||.||..|+ .+|.++...+...
T Consensus 155 ~~~r~~~~~iggf~~~~~--~~eD~~l~~rl~~~g~~~~~~~~~~ 197 (202)
T cd04184 155 VYRRSLVRQVGGFREGFE--GAQDYDLVLRVSEHTDRIAHIPRVL 197 (202)
T ss_pred eEEHHHHHHhCCCCcCcc--cchhHHHHHHHHhccceEEEccHhh
Confidence 899999999999999876 68999999999 9999988766433
No 13
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=99.17 E-value=5.5e-11 Score=107.33 Aligned_cols=138 Identities=20% Similarity=0.245 Sum_probs=95.6
Q ss_pred eEEEEEeecCchHHHHHHHHHHHHHHhhcccceeEEEEEEccc----------------------------cccchhhhh
Q psy5933 134 QVAIIVPYMNREGQLKTFLLHIHQFLQKQFISYQIFVIEQRHP----------------------------AEFNRGKLL 185 (406)
Q Consensus 134 kVAIIIPyRnR~~hL~~fL~~L~p~L~rQ~l~y~I~VIeQ~d~----------------------------g~FNRakLL 185 (406)
+|+||||.||....|..+|..+. .+..-.|+|+||.+... |...++..+
T Consensus 2 ~vsviip~~n~~~~l~~~L~sl~---~q~~~~~eiivVdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 78 (196)
T cd02520 2 GVSILKPLCGVDPNLYENLESFF---QQDYPKYEILFCVQDEDDPAIPVVRKLIAKYPNVDARLLIGGEKVGINPKVNNL 78 (196)
T ss_pred CeEEEEecCCCCccHHHHHHHHH---hccCCCeEEEEEeCCCcchHHHHHHHHHHHCCCCcEEEEecCCcCCCCHhHHHH
Confidence 59999999999999999988884 32224588887753211 112234457
Q ss_pred hHHHHHHhhcCCccEEEEecCCCCCCCCceeeeeC--CCcceeEEecccccccCCccccccceeeecHhhhhhcCCCCCC
Q psy5933 186 NIGYIEALKIKPFHCFIFHDVDLMPTNPNNIYACT--KQPRHMSVAIDTFNYELPYCTIFGGAIAMLQHQFRQVNGFSNL 263 (406)
Q Consensus 186 NvG~~eA~k~~~~Dc~IFhDVDLIp~~d~nlY~c~--~~PrHlS~~~dkf~yrlpy~~~fGGv~a~~kedF~kVNGFdN~ 263 (406)
|.|+..| .+|+++|+|.|.++.++....... ..|. ...... ....|+.+++.++-|.+++||+.
T Consensus 79 n~g~~~a----~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~-~~~v~~--------~~~~g~~~~~r~~~~~~~ggf~~- 144 (196)
T cd02520 79 IKGYEEA----RYDILVISDSDISVPPDYLRRMVAPLMDPG-VGLVTC--------LCAFGKSMALRREVLDAIGGFEA- 144 (196)
T ss_pred HHHHHhC----CCCEEEEECCCceEChhHHHHHHHHhhCCC-CCeEEe--------ecccCceeeeEHHHHHhccChHH-
Confidence 7888876 679999999999987775311111 1111 110000 04668999999999999999975
Q ss_pred CccCCCCchhHHHHH-HCCCeEEecc
Q psy5933 264 YFGWGAEDDDLFQRL-SNYYSICRFS 288 (406)
Q Consensus 264 fwGWGGEDdDL~~RL-~~Glki~R~~ 288 (406)
+....+||.||..|+ .+|.++.-.+
T Consensus 145 ~~~~~~eD~~l~~rl~~~G~~i~~~~ 170 (196)
T cd02520 145 FADYLAEDYFLGKLIWRLGYRVVLSP 170 (196)
T ss_pred HhHHHHHHHHHHHHHHHcCCeEEEcc
Confidence 333457999999999 9999987554
No 14
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=99.16 E-value=1.9e-10 Score=105.75 Aligned_cols=143 Identities=14% Similarity=0.151 Sum_probs=93.7
Q ss_pred eEEEEEeecCchHHHHHHHHHHHHHHhhccc---ceeEEEEEEcccc----------------------------ccchh
Q psy5933 134 QVAIIVPYMNREGQLKTFLLHIHQFLQKQFI---SYQIFVIEQRHPA----------------------------EFNRG 182 (406)
Q Consensus 134 kVAIIIPyRnR~~hL~~fL~~L~p~L~rQ~l---~y~I~VIeQ~d~g----------------------------~FNRa 182 (406)
+|+||||.||.++.|...|..+. +|.. .++|+|+....++ .| |+
T Consensus 2 ~vSViIp~yNe~~~l~~~L~sl~----~q~~~~~~~eIiVvD~s~D~t~~~~~~~~~~~~~~~~~i~~~~~~~~~G~-k~ 76 (232)
T cd06437 2 MVTVQLPVFNEKYVVERLIEAAC----ALDYPKDRLEIQVLDDSTDETVRLAREIVEEYAAQGVNIKHVRRADRTGY-KA 76 (232)
T ss_pred ceEEEEecCCcHHHHHHHHHHHH----hcCCCccceEEEEEECCCCcHHHHHHHHHHHHhhcCCceEEEECCCCCCC-ch
Confidence 69999999999999999999874 3332 2567666532211 11 55
Q ss_pred hhhhHHHHHHhhcCCccEEEEecCCCCCCCCceee--eeCCCcc-------eeEEe-cccc---------c--cc-----
Q psy5933 183 KLLNIGYIEALKIKPFHCFIFHDVDLMPTNPNNIY--ACTKQPR-------HMSVA-IDTF---------N--YE----- 236 (406)
Q Consensus 183 kLLNvG~~eA~k~~~~Dc~IFhDVDLIp~~d~nlY--~c~~~Pr-------HlS~~-~dkf---------~--yr----- 236 (406)
.++|.|+..| .+|+++|.|.|.++.++...- .....|. ..... .+.+ . +.
T Consensus 77 ~a~n~g~~~a----~~~~i~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (232)
T cd06437 77 GALAEGMKVA----KGEYVAIFDADFVPPPDFLQKTPPYFADPKLGFVQTRWGHINANYSLLTRVQAMSLDYHFTIEQVA 152 (232)
T ss_pred HHHHHHHHhC----CCCEEEEEcCCCCCChHHHHHhhhhhcCCCeEEEecceeeEcCCCchhhHhhhhhHHhhhhHhHhh
Confidence 6789999877 679999999999998885210 0001111 00000 0000 0 00
Q ss_pred ---CC-ccccccceeeecHhhhhhcCCCCCCCccCCCCchhHHHHH-HCCCeEEecc
Q psy5933 237 ---LP-YCTIFGGAIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQRL-SNYYSICRFS 288 (406)
Q Consensus 237 ---lp-y~~~fGGv~a~~kedF~kVNGFdN~fwGWGGEDdDL~~RL-~~Glki~R~~ 288 (406)
.. .....|+.++++|+.|.+++||++.. ..||.||..|+ ..|.++...+
T Consensus 153 ~~~~~~~~~~~g~~~~~rr~~~~~vgg~~~~~---~~ED~~l~~rl~~~G~~~~~~~ 206 (232)
T cd06437 153 RSSTGLFFNFNGTAGVWRKECIEDAGGWNHDT---LTEDLDLSYRAQLKGWKFVYLD 206 (232)
T ss_pred HhhcCCeEEeccchhhhhHHHHHHhCCCCCCc---chhhHHHHHHHHHCCCeEEEec
Confidence 00 01124666678899999999999875 35999999999 9999888765
No 15
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.15 E-value=2.9e-10 Score=101.74 Aligned_cols=140 Identities=16% Similarity=0.105 Sum_probs=96.6
Q ss_pred EEEeecCchHHHHHHHHHHHHHHhhcccceeEEEEEEccc----------------------cccchhhhhhHHHHHHhh
Q psy5933 137 IIVPYMNREGQLKTFLLHIHQFLQKQFISYQIFVIEQRHP----------------------AEFNRGKLLNIGYIEALK 194 (406)
Q Consensus 137 IIIPyRnR~~hL~~fL~~L~p~L~rQ~l~y~I~VIeQ~d~----------------------g~FNRakLLNvG~~eA~k 194 (406)
||||.||+++.|..+|..+. ++....++|+|+..... .....+.++|.|+..|.
T Consensus 1 viI~~~n~~~~l~~~l~sl~---~q~~~~~eiiivD~~s~d~t~~~~~~~~~~~~i~~~~~~~n~g~~~~~n~~~~~a~- 76 (202)
T cd04185 1 AVVVTYNRLDLLKECLDALL---AQTRPPDHIIVIDNASTDGTAEWLTSLGDLDNIVYLRLPENLGGAGGFYEGVRRAY- 76 (202)
T ss_pred CEEEeeCCHHHHHHHHHHHH---hccCCCceEEEEECCCCcchHHHHHHhcCCCceEEEECccccchhhHHHHHHHHHh-
Confidence 69999999999999999883 32233578888864321 02334567899999887
Q ss_pred cCCccEEEEecCCCCCCCCcee--eeeCCCcceeEEecccccccCCccccccceeeecHhhhhhcCCCCCCCccCCCCch
Q psy5933 195 IKPFHCFIFHDVDLMPTNPNNI--YACTKQPRHMSVAIDTFNYELPYCTIFGGAIAMLQHQFRQVNGFSNLYFGWGAEDD 272 (406)
Q Consensus 195 ~~~~Dc~IFhDVDLIp~~d~nl--Y~c~~~PrHlS~~~dkf~yrlpy~~~fGGv~a~~kedF~kVNGFdN~fwGWGGEDd 272 (406)
..++|+++|.|.|.++.++..- ..+-..|..-.+....+.. .. .++.+.+.++-|.+++||+..|..|| ||.
T Consensus 77 ~~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~g~~~~~~~~~~-eD~ 150 (202)
T cd04185 77 ELGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVLDP----DG-SFVGVLISRRVVEKIGLPDKEFFIWG-DDT 150 (202)
T ss_pred ccCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeEcC----CC-ceEEEEEeHHHHHHhCCCChhhhccc-hHH
Confidence 4678999999999999887531 1111112111111111111 11 23456799999999999999998887 999
Q ss_pred hHHHHH-HCCCeEEe
Q psy5933 273 DLFQRL-SNYYSICR 286 (406)
Q Consensus 273 DL~~RL-~~Glki~R 286 (406)
|+..|+ .+|.++.-
T Consensus 151 ~~~~r~~~~G~~i~~ 165 (202)
T cd04185 151 EYTLRASKAGPGIYV 165 (202)
T ss_pred HHHHHHHHcCCcEEe
Confidence 999999 99999933
No 16
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.14 E-value=3.9e-10 Score=101.60 Aligned_cols=142 Identities=16% Similarity=0.217 Sum_probs=96.1
Q ss_pred EEEEEeecCchHHHHHHHHHHHHHHhhcccceeEEEEEEccc----------------cccchhhhhhHHHHHHhhcCCc
Q psy5933 135 VAIIVPYMNREGQLKTFLLHIHQFLQKQFISYQIFVIEQRHP----------------AEFNRGKLLNIGYIEALKIKPF 198 (406)
Q Consensus 135 VAIIIPyRnR~~hL~~fL~~L~p~L~rQ~l~y~I~VIeQ~d~----------------g~FNRakLLNvG~~eA~k~~~~ 198 (406)
|+||||.+|+++.|..+|..+. ++....++|+||+.... .+-++|.++|.|+..| ..
T Consensus 1 vsvii~~~n~~~~l~~~l~sl~---~q~~~~~evivvdd~s~d~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a----~~ 73 (221)
T cd02522 1 LSIIIPTLNEAENLPRLLASLR---RLNPLPLEIIVVDGGSTDGTVAIARSAGVVVISSPKGRARQMNAGAAAA----RG 73 (221)
T ss_pred CEEEEEccCcHHHHHHHHHHHH---hccCCCcEEEEEeCCCCccHHHHHhcCCeEEEeCCcCHHHHHHHHHHhc----cC
Confidence 6899999999999999998873 33335688888864431 1346788999999987 46
Q ss_pred cEEEEecCCCCCCCCcee--eeeC-CCcceeEE-----eccc-------cc--cc-CCccccc-cceeeecHhhhhhcCC
Q psy5933 199 HCFIFHDVDLMPTNPNNI--YACT-KQPRHMSV-----AIDT-------FN--YE-LPYCTIF-GGAIAMLQHQFRQVNG 259 (406)
Q Consensus 199 Dc~IFhDVDLIp~~d~nl--Y~c~-~~PrHlS~-----~~dk-------f~--yr-lpy~~~f-GGv~a~~kedF~kVNG 259 (406)
|+++|.|.|..+.++... .... ..+..... .... .. .+ ......+ ++.+++.++.|.+++|
T Consensus 74 ~~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~G~ 153 (221)
T cd02522 74 DWLLFLHADTRLPPDWDAAIIETLRADGAVAGAFRLRFDDPGPRLRLLELGANLRSRLFGLPYGDQGLFIRRELFEELGG 153 (221)
T ss_pred CEEEEEcCCCCCChhHHHHHHHHhhcCCcEEEEEEeeecCCccchhhhhhcccceecccCCCcCCceEEEEHHHHHHhCC
Confidence 999999999999877421 1100 00000000 0000 00 00 0011122 3468889999999999
Q ss_pred CCCCCccCCCCchhHHHHH-HCCCeEEe
Q psy5933 260 FSNLYFGWGAEDDDLFQRL-SNYYSICR 286 (406)
Q Consensus 260 FdN~fwGWGGEDdDL~~RL-~~Glki~R 286 (406)
|++.+ ++||.||..|+ .+|.++.-
T Consensus 154 fd~~~---~~ED~d~~~r~~~~G~~~~~ 178 (221)
T cd02522 154 FPELP---LMEDVELVRRLRRRGRPALL 178 (221)
T ss_pred CCccc---cccHHHHHHHHHhCCCEEEc
Confidence 99999 77999999999 99987764
No 17
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=99.13 E-value=5.8e-10 Score=101.52 Aligned_cols=147 Identities=20% Similarity=0.133 Sum_probs=101.3
Q ss_pred eEEEEEeecCchHHHHHHHHHHHHHHhhcc---cceeEEEEEEccc----------------------cccchhhhhhHH
Q psy5933 134 QVAIIVPYMNREGQLKTFLLHIHQFLQKQF---ISYQIFVIEQRHP----------------------AEFNRGKLLNIG 188 (406)
Q Consensus 134 kVAIIIPyRnR~~hL~~fL~~L~p~L~rQ~---l~y~I~VIeQ~d~----------------------g~FNRakLLNvG 188 (406)
+++||||.+|+.+.|..+|..+. +|. ..|+|+|++..+. .....+.++|.|
T Consensus 1 ~~sIiip~~n~~~~l~~~l~sl~----~q~~~~~~~evivvd~~s~d~~~~~~~~~~~~~~~v~~i~~~~~~~~~a~N~g 76 (249)
T cd02525 1 FVSIIIPVRNEEKYIEELLESLL----NQSYPKDLIEIIVVDGGSTDGTREIVQEYAAKDPRIRLIDNPKRIQSAGLNIG 76 (249)
T ss_pred CEEEEEEcCCchhhHHHHHHHHH----hccCCCCccEEEEEeCCCCccHHHHHHHHHhcCCeEEEEeCCCCCchHHHHHH
Confidence 48999999999999999998874 333 3688888864422 123467889999
Q ss_pred HHHHhhcCCccEEEEecCCCCCCCCceeeee---CC-------CcceeEE---------------ecc-cccccCC----
Q psy5933 189 YIEALKIKPFHCFIFHDVDLMPTNPNNIYAC---TK-------QPRHMSV---------------AID-TFNYELP---- 238 (406)
Q Consensus 189 ~~eA~k~~~~Dc~IFhDVDLIp~~d~nlY~c---~~-------~PrHlS~---------------~~d-kf~yrlp---- 238 (406)
+..| .+|+++|.|.|.++.++..--.+ .. .+..... ... .-.++.+
T Consensus 77 ~~~a----~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (249)
T cd02525 77 IRNS----RGDIIIRVDAHAVYPKDYILELVEALKRTGADNVGGPMETIGESKFQKAIAVAQSSPLGSGGSAYRGGAVKI 152 (249)
T ss_pred HHHh----CCCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEecceecCCCChHHHHHHHHhhchhccCCcccccccccc
Confidence 9988 67999999999999877421000 00 0110000 000 0001111
Q ss_pred ccccccceeeecHhhhhhcCCCCCCCccCCCCchhHHHHH-HCCCeEEecccc
Q psy5933 239 YCTIFGGAIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQRL-SNYYSICRFSKQ 290 (406)
Q Consensus 239 y~~~fGGv~a~~kedF~kVNGFdN~fwGWGGEDdDL~~RL-~~Glki~R~~~~ 290 (406)
.....|+.++++++-|.+++||++.|. ++||.||..|+ .+|.++.-.+..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~eD~~l~~r~~~~G~~~~~~~~~ 203 (249)
T cd02525 153 GYVDTVHHGAYRREVFEKVGGFDESLV--RNEDAELNYRLRKAGYKIWLSPDI 203 (249)
T ss_pred ccccccccceEEHHHHHHhCCCCcccC--ccchhHHHHHHHHcCcEEEEcCCe
Confidence 113467888999999999999999876 37999999999 999998876543
No 18
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=99.05 E-value=1.4e-09 Score=99.22 Aligned_cols=151 Identities=19% Similarity=0.167 Sum_probs=98.7
Q ss_pred EEEeecCchHHHHHHHHHHHHHHhhccc--ceeEEEEEEcccc---------------------------c--cchhhhh
Q psy5933 137 IIVPYMNREGQLKTFLLHIHQFLQKQFI--SYQIFVIEQRHPA---------------------------E--FNRGKLL 185 (406)
Q Consensus 137 IIIPyRnR~~hL~~fL~~L~p~L~rQ~l--~y~I~VIeQ~d~g---------------------------~--FNRakLL 185 (406)
||||.||+++.|..+|..+. .|.. .++|+||...... + -..|.++
T Consensus 1 ViIp~yn~~~~l~~~l~sl~----~q~~~~~~eiiVvDd~S~d~t~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~a~ 76 (219)
T cd06913 1 IILPVHNGEQWLDECLESVL----QQDFEGTLELSVFNDASTDKSAEIIEKWRKKLEDSGVIVLVGSHNSPSPKGVGYAK 76 (219)
T ss_pred CEEeecCcHHHHHHHHHHHH----hCCCCCCEEEEEEeCCCCccHHHHHHHHHHhCcccCeEEEEecccCCCCccHHHHH
Confidence 79999999999999999883 3433 5899998754311 1 1235678
Q ss_pred hHHHHHHhhcCCccEEEEecCCCCCCCCcee--e-eeCCCccee-EEec-----c---ccc---ccCC------------
Q psy5933 186 NIGYIEALKIKPFHCFIFHDVDLMPTNPNNI--Y-ACTKQPRHM-SVAI-----D---TFN---YELP------------ 238 (406)
Q Consensus 186 NvG~~eA~k~~~~Dc~IFhDVDLIp~~d~nl--Y-~c~~~PrHl-S~~~-----d---kf~---yrlp------------ 238 (406)
|.|++.| .+|+++|.|.|.++.++... + .+.+.|.-+ .... + ++. ..+.
T Consensus 77 N~g~~~a----~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (219)
T cd06913 77 NQAIAQS----SGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGCQVRRIPEDSTERYTRWINTLTREQLLTQVYTSH 152 (219)
T ss_pred HHHHHhc----CCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEEEEEecCcccchhhHHHHHhcCHHHHHHHHHhhc
Confidence 9998877 57999999999988777421 1 111111100 0000 0 000 0000
Q ss_pred ccccccceeeecHhhhhhcCCCCCCCccCCCCchhHHHHH-HCCCeEEecccceeeEEe
Q psy5933 239 YCTIFGGAIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQRL-SNYYSICRFSKQVSEYVM 296 (406)
Q Consensus 239 y~~~fGGv~a~~kedF~kVNGFdN~fwGWGGEDdDL~~RL-~~Glki~R~~~~~grY~m 296 (406)
........+.++|+.|.+++||++.+.+++ ||.||+.|+ .+|.++...+.....|+.
T Consensus 153 ~~~~~~~~~~~rr~~~~~~g~f~~~~~~~~-eD~~l~~r~~~~g~~i~~~~~~~~~yr~ 210 (219)
T cd06913 153 GPTVIMPTWFCSREWFSHVGPFDEGGKGVP-EDLLFFYEHLRKGGGVYRVDRCLLLYRY 210 (219)
T ss_pred CCccccccceeehhHHhhcCCccchhccch-hHHHHHHHHHHcCCceEEEcceeeeeee
Confidence 001111224579999999999999977654 999999999 999999888776666643
No 19
>PRK11204 N-glycosyltransferase; Provisional
Probab=99.02 E-value=1.4e-09 Score=109.66 Aligned_cols=148 Identities=20% Similarity=0.269 Sum_probs=99.1
Q ss_pred CceEEEEEeecCchHHHHHHHHHHHHHHhhcccceeEEEEEEccc-----------------------cccchhhhhhHH
Q psy5933 132 QHQVAIIVPYMNREGQLKTFLLHIHQFLQKQFISYQIFVIEQRHP-----------------------AEFNRGKLLNIG 188 (406)
Q Consensus 132 ~~kVAIIIPyRnR~~hL~~fL~~L~p~L~rQ~l~y~I~VIeQ~d~-----------------------g~FNRakLLNvG 188 (406)
..+|+||||.||+++.++..+..+. ++..-+++|+|+....+ ..-.++.++|.|
T Consensus 53 ~p~vsViIp~yne~~~i~~~l~sl~---~q~yp~~eiiVvdD~s~d~t~~~l~~~~~~~~~v~~i~~~~n~Gka~aln~g 129 (420)
T PRK11204 53 YPGVSILVPCYNEGENVEETISHLL---ALRYPNYEVIAINDGSSDNTGEILDRLAAQIPRLRVIHLAENQGKANALNTG 129 (420)
T ss_pred CCCEEEEEecCCCHHHHHHHHHHHH---hCCCCCeEEEEEECCCCccHHHHHHHHHHhCCcEEEEEcCCCCCHHHHHHHH
Confidence 3579999999999999998888763 33334678888754321 112366788999
Q ss_pred HHHHhhcCCccEEEEecCCCCCCCCceeee---eCCCcceeEEec-----c------cc---ccc----------CCc--
Q psy5933 189 YIEALKIKPFHCFIFHDVDLMPTNPNNIYA---CTKQPRHMSVAI-----D------TF---NYE----------LPY-- 239 (406)
Q Consensus 189 ~~eA~k~~~~Dc~IFhDVDLIp~~d~nlY~---c~~~PrHlS~~~-----d------kf---~yr----------lpy-- 239 (406)
+..| ++|++++.|.|.++++|..... ....|..-.+.. + +. .|. ..+
T Consensus 130 ~~~a----~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (420)
T PRK11204 130 AAAA----RSEYLVCIDGDALLDPDAAAYMVEHFLHNPRVGAVTGNPRIRNRSTLLGRIQVGEFSSIIGLIKRAQRVYGR 205 (420)
T ss_pred HHHc----CCCEEEEECCCCCCChhHHHHHHHHHHhCCCeEEEECCceeccchhHHHHHHHHHHHHhhhHHHHHHHHhCC
Confidence 8876 6799999999999998853111 111221111100 0 00 000 000
Q ss_pred -cccccceeeecHhhhhhcCCCCCCCccCCCCchhHHHHH-HCCCeEEeccc
Q psy5933 240 -CTIFGGAIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQRL-SNYYSICRFSK 289 (406)
Q Consensus 240 -~~~fGGv~a~~kedF~kVNGFdN~fwGWGGEDdDL~~RL-~~Glki~R~~~ 289 (406)
...-|+.++++++.+.+++||++..- +||.|+..|+ .+|.++.-.+.
T Consensus 206 ~~~~~G~~~~~rr~~l~~vgg~~~~~~---~ED~~l~~rl~~~G~~i~~~p~ 254 (420)
T PRK11204 206 VFTVSGVITAFRKSALHEVGYWSTDMI---TEDIDISWKLQLRGWDIRYEPR 254 (420)
T ss_pred ceEecceeeeeeHHHHHHhCCCCCCcc---cchHHHHHHHHHcCCeEEeccc
Confidence 11236678999999999999999875 5999999999 99998876553
No 20
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=99.01 E-value=1.7e-09 Score=98.70 Aligned_cols=144 Identities=22% Similarity=0.276 Sum_probs=97.8
Q ss_pred EEEeecCch-HHHHHHHHHHHHHHhhcccceeEEEEEEccc--------------------cccchhhhhhHHHHHHhhc
Q psy5933 137 IIVPYMNRE-GQLKTFLLHIHQFLQKQFISYQIFVIEQRHP--------------------AEFNRGKLLNIGYIEALKI 195 (406)
Q Consensus 137 IIIPyRnR~-~hL~~fL~~L~p~L~rQ~l~y~I~VIeQ~d~--------------------g~FNRakLLNvG~~eA~k~ 195 (406)
+|||.+|++ +.|..+|..+. .| .++|+||....+ ....+|.++|.|+..|.+.
T Consensus 1 ~vI~~yn~~~~~l~~~l~sl~----~q--~~~iivvDn~s~~~~~~~~~~~~~~i~~i~~~~n~G~~~a~N~g~~~a~~~ 74 (237)
T cd02526 1 AVVVTYNPDLSKLKELLAALA----EQ--VDKVVVVDNSSGNDIELRLRLNSEKIELIHLGENLGIAKALNIGIKAALEN 74 (237)
T ss_pred CEEEEecCCHHHHHHHHHHHh----cc--CCEEEEEeCCCCccHHHHhhccCCcEEEEECCCceehHHhhhHHHHHHHhC
Confidence 478888888 99999999874 34 577888753321 2366889999999999652
Q ss_pred CCccEEEEecCCCCCCCCce--ee---eeC-C-------CcceeEEecccc-------cc---------c--CCcccccc
Q psy5933 196 KPFHCFIFHDVDLMPTNPNN--IY---ACT-K-------QPRHMSVAIDTF-------NY---------E--LPYCTIFG 244 (406)
Q Consensus 196 ~~~Dc~IFhDVDLIp~~d~n--lY---~c~-~-------~PrHlS~~~dkf-------~y---------r--lpy~~~fG 244 (406)
++|+++|.|.|.++.++.. +. .+. . .|.......... .+ + .+.....|
T Consensus 75 -~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (237)
T cd02526 75 -GADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSPGVRKSGYKLRIQKEGEEGLKEVDFLIT 153 (237)
T ss_pred -CCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCeeccceeccCccceecccccCCceEeeeeec
Confidence 6899999999999988753 11 111 1 111110000000 00 0 01112345
Q ss_pred ceeeecHhhhhhcCCCCCCCccCCCCchhHHHHH-HCCCeEEecc
Q psy5933 245 GAIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQRL-SNYYSICRFS 288 (406)
Q Consensus 245 Gv~a~~kedF~kVNGFdN~fwGWGGEDdDL~~RL-~~Glki~R~~ 288 (406)
+.+++.++.|.+++||++.+- .++||.||..|+ .+|.++...+
T Consensus 154 ~~~~~rr~~~~~~ggfd~~~~-~~~eD~d~~~r~~~~G~~~~~~~ 197 (237)
T cd02526 154 SGSLISLEALEKVGGFDEDLF-IDYVDTEWCLRARSKGYKIYVVP 197 (237)
T ss_pred cceEEcHHHHHHhCCCCHHHc-CccchHHHHHHHHHcCCcEEEEc
Confidence 567899999999999999875 678999999999 9999887654
No 21
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.00 E-value=3.6e-09 Score=92.37 Aligned_cols=144 Identities=19% Similarity=0.160 Sum_probs=95.6
Q ss_pred EEEEeecCchHHHHHHHHHHHHHHhhcccceeEEEEEEccc--------------------cccchhhhhhHHHHHHhhc
Q psy5933 136 AIIVPYMNREGQLKTFLLHIHQFLQKQFISYQIFVIEQRHP--------------------AEFNRGKLLNIGYIEALKI 195 (406)
Q Consensus 136 AIIIPyRnR~~hL~~fL~~L~p~L~rQ~l~y~I~VIeQ~d~--------------------g~FNRakLLNvG~~eA~k~ 195 (406)
+||||.||+++.|..+|..+. ++..-+++|+||..... ....++.++|.|++.|
T Consensus 1 sivi~~~n~~~~l~~~l~sl~---~q~~~~~evivvDd~s~d~~~~~~~~~~~~~~~~~~~~~~g~~~a~n~~~~~a--- 74 (202)
T cd06433 1 SIITPTYNQAETLEETIDSVL---SQTYPNIEYIVIDGGSTDGTVDIIKKYEDKITYWISEPDKGIYDAMNKGIALA--- 74 (202)
T ss_pred CEEEeccchHHHHHHHHHHHH---hCCCCCceEEEEeCCCCccHHHHHHHhHhhcEEEEecCCcCHHHHHHHHHHHc---
Confidence 589999999999999999874 22223488888864321 2456788999999987
Q ss_pred CCccEEEEecCCCCCCCCceee---eeCCCcc--eeE-----Eeccc--cccc----------CCccccccceeeecHhh
Q psy5933 196 KPFHCFIFHDVDLMPTNPNNIY---ACTKQPR--HMS-----VAIDT--FNYE----------LPYCTIFGGAIAMLQHQ 253 (406)
Q Consensus 196 ~~~Dc~IFhDVDLIp~~d~nlY---~c~~~Pr--HlS-----~~~dk--f~yr----------lpy~~~fGGv~a~~ked 253 (406)
..|+++|.|.|..+.++...- .+...|. -.. ...+. ...+ ..-....|+.+++.++-
T Consensus 75 -~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (202)
T cd06433 75 -TGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENGRVIGRRRPPPFLDKFLLYGMPICHQATFFRRSL 153 (202)
T ss_pred -CCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEEcCCCCcccCCCCcchhhhHHhhcCcccCcceEEEHHH
Confidence 569999999999998875311 1111110 000 00000 0000 01122345567799999
Q ss_pred hhhcCCCCCCCccCCCCchhHHHHH-HCCCeEEecc
Q psy5933 254 FRQVNGFSNLYFGWGAEDDDLFQRL-SNYYSICRFS 288 (406)
Q Consensus 254 F~kVNGFdN~fwGWGGEDdDL~~RL-~~Glki~R~~ 288 (406)
|.+++||++.+- + +||.|+..|+ ..|.++.-.+
T Consensus 154 ~~~~~~f~~~~~-~-~~D~~~~~r~~~~g~~~~~~~ 187 (202)
T cd06433 154 FEKYGGFDESYR-I-AADYDLLLRLLLAGKIFKYLP 187 (202)
T ss_pred HHHhCCCchhhC-c-hhhHHHHHHHHHcCCceEecc
Confidence 999999999875 3 4799999999 9998885444
No 22
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=99.00 E-value=4.4e-09 Score=95.33 Aligned_cols=146 Identities=13% Similarity=0.157 Sum_probs=95.2
Q ss_pred eEEEEEeecCch-HHHHHHHHHHHHHHhhcccc--eeEEEEEEccc-----------------------cccchhhhhhH
Q psy5933 134 QVAIIVPYMNRE-GQLKTFLLHIHQFLQKQFIS--YQIFVIEQRHP-----------------------AEFNRGKLLNI 187 (406)
Q Consensus 134 kVAIIIPyRnR~-~hL~~fL~~L~p~L~rQ~l~--y~I~VIeQ~d~-----------------------g~FNRakLLNv 187 (406)
+|+||||.||++ +.|+..|..+. ++.--+ ++|+||....+ ..-.++..+|.
T Consensus 2 ~vsviip~~n~~~~~l~~~l~sl~---~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 78 (234)
T cd06421 2 TVDVFIPTYNEPLEIVRKTLRAAL---AIDYPHDKLRVYVLDDGRRPELRALAAELGVEYGYRYLTRPDNRHAKAGNLNN 78 (234)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHH---hcCCCcccEEEEEEcCCCchhHHHHHHHhhcccCceEEEeCCCCCCcHHHHHH
Confidence 699999999986 67888887774 222223 78888853321 11224556888
Q ss_pred HHHHHhhcCCccEEEEecCCCCCCCCcee--e-eeCCCc--------ceeEEeccc------cc-----c--------c-
Q psy5933 188 GYIEALKIKPFHCFIFHDVDLMPTNPNNI--Y-ACTKQP--------RHMSVAIDT------FN-----Y--------E- 236 (406)
Q Consensus 188 G~~eA~k~~~~Dc~IFhDVDLIp~~d~nl--Y-~c~~~P--------rHlS~~~dk------f~-----y--------r- 236 (406)
|++.| ++|+++|.|.|.++.++... . .+...| ......... +. + .
T Consensus 79 ~~~~a----~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (234)
T cd06421 79 ALAHT----TGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPGRDR 154 (234)
T ss_pred HHHhC----CCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcchhHHHHHHHHHHHHHHHHHHHHhh
Confidence 98876 68999999999999888531 0 111111 111100000 00 0 0
Q ss_pred CCccccccceeeecHhhhhhcCCCCCCCccCCCCchhHHHHH-HCCCeEEeccc
Q psy5933 237 LPYCTIFGGAIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQRL-SNYYSICRFSK 289 (406)
Q Consensus 237 lpy~~~fGGv~a~~kedF~kVNGFdN~fwGWGGEDdDL~~RL-~~Glki~R~~~ 289 (406)
.......|+.++++++-|.+++||++.+. +||.|+..|+ .+|.++.-.+.
T Consensus 155 ~~~~~~~g~~~~~r~~~~~~ig~~~~~~~---~eD~~l~~r~~~~g~~i~~~~~ 205 (234)
T cd06421 155 WGAAFCCGSGAVVRREALDEIGGFPTDSV---TEDLATSLRLHAKGWRSVYVPE 205 (234)
T ss_pred cCCceecCceeeEeHHHHHHhCCCCccce---eccHHHHHHHHHcCceEEEecC
Confidence 01223457899999999999999997654 5999999999 99998876553
No 23
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=99.00 E-value=1.8e-09 Score=110.93 Aligned_cols=147 Identities=18% Similarity=0.228 Sum_probs=98.0
Q ss_pred CceEEEEEeecCchHHHHHHHHHHHHHHhhcccceeEEEEEEccc-----------------------cccchhhhhhHH
Q psy5933 132 QHQVAIIVPYMNREGQLKTFLLHIHQFLQKQFISYQIFVIEQRHP-----------------------AEFNRGKLLNIG 188 (406)
Q Consensus 132 ~~kVAIIIPyRnR~~hL~~fL~~L~p~L~rQ~l~y~I~VIeQ~d~-----------------------g~FNRakLLNvG 188 (406)
..+|+||||.||.+..+...+.++. ++..-+++|+|+...++ ..-.|+.++|.|
T Consensus 74 ~p~vsViIP~yNE~~~i~~~l~sll---~q~yp~~eIivVdDgs~D~t~~~~~~~~~~~~~v~vv~~~~n~Gka~AlN~g 150 (444)
T PRK14583 74 HPLVSILVPCFNEGLNARETIHAAL---AQTYTNIEVIAINDGSSDDTAQVLDALLAEDPRLRVIHLAHNQGKAIALRMG 150 (444)
T ss_pred CCcEEEEEEeCCCHHHHHHHHHHHH---cCCCCCeEEEEEECCCCccHHHHHHHHHHhCCCEEEEEeCCCCCHHHHHHHH
Confidence 3579999999999999988887763 33333588888853221 123466788999
Q ss_pred HHHHhhcCCccEEEEecCCCCCCCCceeee---eCCCcceeEEe-----------cccc---ccc----------CCcc-
Q psy5933 189 YIEALKIKPFHCFIFHDVDLMPTNPNNIYA---CTKQPRHMSVA-----------IDTF---NYE----------LPYC- 240 (406)
Q Consensus 189 ~~eA~k~~~~Dc~IFhDVDLIp~~d~nlY~---c~~~PrHlS~~-----------~dkf---~yr----------lpy~- 240 (406)
+..| ++|++++.|.|.++++|..... ..+.|+--.+. ..+. .|. -.+.
T Consensus 151 l~~a----~~d~iv~lDAD~~~~~d~L~~lv~~~~~~~~~g~v~g~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~g~ 226 (444)
T PRK14583 151 AAAA----RSEYLVCIDGDALLDKNAVPYLVAPLIANPRTGAVTGNPRIRTRSTLIGRVQVGEFSSIIGLIKRTQRVYGQ 226 (444)
T ss_pred HHhC----CCCEEEEECCCCCcCHHHHHHHHHHHHhCCCeEEEEccceecCCCcchhhHHHHHHHHHHHHHHHHHHHhCC
Confidence 8876 6899999999999998853110 00111110000 0000 010 0011
Q ss_pred --ccccceeeecHhhhhhcCCCCCCCccCCCCchhHHHHH-HCCCeEEecc
Q psy5933 241 --TIFGGAIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQRL-SNYYSICRFS 288 (406)
Q Consensus 241 --~~fGGv~a~~kedF~kVNGFdN~fwGWGGEDdDL~~RL-~~Glki~R~~ 288 (406)
..-|++.+++++.+.+++||+++.- .||.|+..|+ .+|.++.-.+
T Consensus 227 ~~~~sG~~~~~rr~al~~vGg~~~~~i---~ED~dl~~rl~~~G~~i~~~p 274 (444)
T PRK14583 227 VFTVSGVVAAFRRRALADVGYWSPDMI---TEDIDISWKLQLKHWSVFFEP 274 (444)
T ss_pred ceEecCceeEEEHHHHHHcCCCCCCcc---cccHHHHHHHHHcCCeEEEee
Confidence 1236778999999999999998865 5999999999 9999876554
No 24
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=98.96 E-value=4.8e-09 Score=97.64 Aligned_cols=144 Identities=16% Similarity=0.179 Sum_probs=95.6
Q ss_pred eEEEEEeecCchHHHHHHHHHHHHHHhhccc---ceeEEEEEEcc------------------------ccccchhhhhh
Q psy5933 134 QVAIIVPYMNREGQLKTFLLHIHQFLQKQFI---SYQIFVIEQRH------------------------PAEFNRGKLLN 186 (406)
Q Consensus 134 kVAIIIPyRnR~~hL~~fL~~L~p~L~rQ~l---~y~I~VIeQ~d------------------------~g~FNRakLLN 186 (406)
+++||||.||.++.|..+|..+. +|.. .++|+||...+ ++...++.++|
T Consensus 2 ~vsIiIp~~Ne~~~l~~~l~sl~----~~~y~~~~~eiivVdd~s~d~t~~i~~~~~~~~~~~i~~~~~~~~~G~~~a~n 77 (241)
T cd06427 2 VYTILVPLYKEAEVLPQLIASLS----ALDYPRSKLDVKLLLEEDDEETIAAARALRLPSIFRVVVVPPSQPRTKPKACN 77 (241)
T ss_pred eEEEEEecCCcHHHHHHHHHHHH----hCcCCcccEEEEEEECCCCchHHHHHHHhccCCCeeEEEecCCCCCchHHHHH
Confidence 69999999999999999998874 2322 36777764322 12245789999
Q ss_pred HHHHHHhhcCCccEEEEecCCCCCCCCceee---eeCCC-cceeEE------e--cccc-------cc------------
Q psy5933 187 IGYIEALKIKPFHCFIFHDVDLMPTNPNNIY---ACTKQ-PRHMSV------A--IDTF-------NY------------ 235 (406)
Q Consensus 187 vG~~eA~k~~~~Dc~IFhDVDLIp~~d~nlY---~c~~~-PrHlS~------~--~dkf-------~y------------ 235 (406)
.|+..| .+|+++|.|.|.+++++...- ..... +.-..+ . ...+ .+
T Consensus 78 ~g~~~a----~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (241)
T cd06427 78 YALAFA----RGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAPLNYYNARENWLTRMFALEYAAWFDYLLPGLA 153 (241)
T ss_pred HHHHhc----CCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCceEeeCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 999987 569999999999999885310 01000 110000 0 0000 00
Q ss_pred cCCcc-ccccceeeecHhhhhhcCCCCCCCccCCCCchhHHHHH-HCCCeEEecc
Q psy5933 236 ELPYC-TIFGGAIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQRL-SNYYSICRFS 288 (406)
Q Consensus 236 rlpy~-~~fGGv~a~~kedF~kVNGFdN~fwGWGGEDdDL~~RL-~~Glki~R~~ 288 (406)
+.... ...|..++++++.|.+++||++. ++ .||.|+..|+ .+|.++.-.+
T Consensus 154 ~~~~~~~~~g~~~~~rr~~~~~vgg~~~~--~~-~eD~~l~~rl~~~G~r~~~~~ 205 (241)
T cd06427 154 RLGLPIPLGGTSNHFRTDVLRELGGWDPF--NV-TEDADLGLRLARAGYRTGVLN 205 (241)
T ss_pred hcCCeeecCCchHHhhHHHHHHcCCCCcc--cc-hhhHHHHHHHHHCCceEEEec
Confidence 00011 12355688999999999999984 33 5999999999 9999887654
No 25
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=98.95 E-value=4e-09 Score=93.89 Aligned_cols=147 Identities=14% Similarity=0.142 Sum_probs=94.3
Q ss_pred EEEEeecCch--HHHHHHHHHHHHHHhhcccceeEEEEEEcc--c---------------------cccchhhhhhHHHH
Q psy5933 136 AIIVPYMNRE--GQLKTFLLHIHQFLQKQFISYQIFVIEQRH--P---------------------AEFNRGKLLNIGYI 190 (406)
Q Consensus 136 AIIIPyRnR~--~hL~~fL~~L~p~L~rQ~l~y~I~VIeQ~d--~---------------------g~FNRakLLNvG~~ 190 (406)
+||||.+|++ +.|..+|..+. ++...+++|+||.... + ..-..+.++|.|+.
T Consensus 1 sviip~~n~~~~~~l~~~l~Sl~---~q~~~~~eiiivdd~ss~d~t~~~~~~~~~~~~i~~i~~~~n~G~~~a~N~g~~ 77 (201)
T cd04195 1 SVLMSVYIKEKPEFLREALESIL---KQTLPPDEVVLVKDGPVTQSLNEVLEEFKRKLPLKVVPLEKNRGLGKALNEGLK 77 (201)
T ss_pred CEEEEccccchHHHHHHHHHHHH---hcCCCCcEEEEEECCCCchhHHHHHHHHHhcCCeEEEEcCccccHHHHHHHHHH
Confidence 5999999987 58888888773 2222357777775432 0 01133677888888
Q ss_pred HHhhcCCccEEEEecCCCCCCCCceee--------------eeC-----CCcc-eeEEecccc-----cccCCccccccc
Q psy5933 191 EALKIKPFHCFIFHDVDLMPTNPNNIY--------------ACT-----KQPR-HMSVAIDTF-----NYELPYCTIFGG 245 (406)
Q Consensus 191 eA~k~~~~Dc~IFhDVDLIp~~d~nlY--------------~c~-----~~Pr-HlS~~~dkf-----~yrlpy~~~fGG 245 (406)
.| ++|+++|.|.|.++.++...- .+. ..+. +........ .+..+...+-|+
T Consensus 78 ~a----~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (201)
T cd04195 78 HC----TYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDSDGNDIGKRRLPTSHDDILKFARRRSPFNHP 153 (201)
T ss_pred hc----CCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEECCCCCeeccccCCCCHHHHHHHhccCCCCCCh
Confidence 76 679999999999998774210 000 0000 000000000 011112233467
Q ss_pred eeeecHhhhhhcCCCCCCCccCCCCchhHHHHH-HCCCeEEeccccee
Q psy5933 246 AIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQRL-SNYYSICRFSKQVS 292 (406)
Q Consensus 246 v~a~~kedF~kVNGFdN~fwGWGGEDdDL~~RL-~~Glki~R~~~~~g 292 (406)
.+++.++.|.+++||++. .++||.||+.|+ .+|.++...+....
T Consensus 154 ~~~~rr~~~~~~g~~~~~---~~~eD~~~~~r~~~~g~~~~~~~~~~~ 198 (201)
T cd04195 154 TVMFRKSKVLAVGGYQDL---PLVEDYALWARMLANGARFANLPEILV 198 (201)
T ss_pred HHhhhHHHHHHcCCcCCC---CCchHHHHHHHHHHcCCceecccHHHh
Confidence 789999999999999976 789999999999 99998876654433
No 26
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=98.93 E-value=4e-09 Score=96.60 Aligned_cols=143 Identities=17% Similarity=0.144 Sum_probs=94.7
Q ss_pred EEEEeecCch-HHHHHHHHHHHHHHhhcc-cceeEEEEEEccc---------------------------cccchhhhhh
Q psy5933 136 AIIVPYMNRE-GQLKTFLLHIHQFLQKQF-ISYQIFVIEQRHP---------------------------AEFNRGKLLN 186 (406)
Q Consensus 136 AIIIPyRnR~-~hL~~fL~~L~p~L~rQ~-l~y~I~VIeQ~d~---------------------------g~FNRakLLN 186 (406)
+||||.||.+ +.|+.+|.++. +|. -.++|+||..... ..+ ++.++|
T Consensus 1 siiip~~ne~~~~l~~~l~sl~----~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~~~~i~~i~~~~~~G~-~~~a~n 75 (236)
T cd06435 1 SIHVPCYEEPPEMVKETLDSLA----ALDYPNFEVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHVEPLPGA-KAGALN 75 (236)
T ss_pred CeeEeeCCCcHHHHHHHHHHHH----hCCCCCcEEEEEeCCCCchhHHHHHHHHHHHhCCcEEEEEcCCCCCC-chHHHH
Confidence 6999999997 78999988873 333 3577777753221 112 466799
Q ss_pred HHHHHHhhcCCccEEEEecCCCCCCCCceee---eeCCCcceeEEe-----ccc----------ccc------cCCc---
Q psy5933 187 IGYIEALKIKPFHCFIFHDVDLMPTNPNNIY---ACTKQPRHMSVA-----IDT----------FNY------ELPY--- 239 (406)
Q Consensus 187 vG~~eA~k~~~~Dc~IFhDVDLIp~~d~nlY---~c~~~PrHlS~~-----~dk----------f~y------rlpy--- 239 (406)
.|+..|.+ ++|+++|.|.|.++.++.... ... .|..-.+. .+. +.+ ..+.
T Consensus 76 ~g~~~a~~--~~d~i~~lD~D~~~~~~~l~~l~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (236)
T cd06435 76 YALERTAP--DAEIIAVIDADYQVEPDWLKRLVPIFD-DPRVGFVQAPQDYRDGEESLFKRMCYAEYKGFFDIGMVSRNE 152 (236)
T ss_pred HHHHhcCC--CCCEEEEEcCCCCcCHHHHHHHHHHhc-CCCeeEEecCccccCCCccHHHHHHhHHHHHHHHHHhccccc
Confidence 99998753 489999999999998885311 011 11100000 000 000 0010
Q ss_pred ---cccccceeeecHhhhhhcCCCCCCCccCCCCchhHHHHH-HCCCeEEeccc
Q psy5933 240 ---CTIFGGAIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQRL-SNYYSICRFSK 289 (406)
Q Consensus 240 ---~~~fGGv~a~~kedF~kVNGFdN~fwGWGGEDdDL~~RL-~~Glki~R~~~ 289 (406)
....|..+++.++-|.+++||++.+ ..||.||..|+ ..|.++.-.+.
T Consensus 153 ~~~~~~~g~~~~~rr~~~~~iGgf~~~~---~~eD~dl~~r~~~~G~~~~~~~~ 203 (236)
T cd06435 153 RNAIIQHGTMCLIRRSALDDVGGWDEWC---ITEDSELGLRMHEAGYIGVYVAQ 203 (236)
T ss_pred cCceEEecceEEEEHHHHHHhCCCCCcc---ccchHHHHHHHHHCCcEEEEcch
Confidence 0124667899999999999999887 47999999999 99999887653
No 27
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=98.92 E-value=3.5e-09 Score=106.98 Aligned_cols=150 Identities=15% Similarity=0.211 Sum_probs=98.8
Q ss_pred ceEEEEEeecCchHHHHHHHHHHHHHHhhccc--ceeEEEEEEcccc-----------------------------cc-c
Q psy5933 133 HQVAIIVPYMNREGQLKTFLLHIHQFLQKQFI--SYQIFVIEQRHPA-----------------------------EF-N 180 (406)
Q Consensus 133 ~kVAIIIPyRnR~~hL~~fL~~L~p~L~rQ~l--~y~I~VIeQ~d~g-----------------------------~F-N 180 (406)
.+|+||||.||.++.|..+|..+. +|.. +++|+||.....+ .+ .
T Consensus 40 p~VSVIIpa~Ne~~~L~~~L~sL~----~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~G 115 (384)
T TIGR03469 40 PAVVAVVPARNEADVIGECVTSLL----EQDYPGKLHVILVDDHSTDGTADIARAAARAYGRGDRLTVVSGQPLPPGWSG 115 (384)
T ss_pred CCEEEEEecCCcHhHHHHHHHHHH----hCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcCCCCcEEEecCCCCCCCCcc
Confidence 479999999999999999999873 3433 4788888643210 01 2
Q ss_pred hhhhhhHHHHHHhhcC-CccEEEEecCCCCCCCCceee--e--eCCCcceeEEe----cccc---------------ccc
Q psy5933 181 RGKLLNIGYIEALKIK-PFHCFIFHDVDLMPTNPNNIY--A--CTKQPRHMSVA----IDTF---------------NYE 236 (406)
Q Consensus 181 RakLLNvG~~eA~k~~-~~Dc~IFhDVDLIp~~d~nlY--~--c~~~PrHlS~~----~dkf---------------~yr 236 (406)
|+.++|.|++.|.+.. ++|+++|.|.|..++++...- . ........+.. ...+ .+.
T Consensus 116 k~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (384)
T TIGR03469 116 KLWAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARLVARARAEGLDLVSLMVRLRCESFWEKLLIPAFVFFFQKLYP 195 (384)
T ss_pred hHHHHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCEEEecccccCCCHHHHHHHHHHHHHHHHhcc
Confidence 3447999999885321 279999999999998885210 0 00000011100 0000 000
Q ss_pred C-----C---ccccccceeeecHhhhhhcCCCCCCCccCCCCchhHHHHH-HCCCeEEec
Q psy5933 237 L-----P---YCTIFGGAIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQRL-SNYYSICRF 287 (406)
Q Consensus 237 l-----p---y~~~fGGv~a~~kedF~kVNGFdN~fwGWGGEDdDL~~RL-~~Glki~R~ 287 (406)
. + -....|+.++++|+.|.+++||++.+.- -.||.|+..|+ .+|.++.-.
T Consensus 196 ~~~~~~~~~~~~~~~G~~~lirr~~~~~vGGf~~~~~~-~~ED~~L~~r~~~~G~~v~~~ 254 (384)
T TIGR03469 196 FRWVNDPRRRTAAAAGGCILIRREALERIGGIAAIRGA-LIDDCTLAAAVKRSGGRIWLG 254 (384)
T ss_pred hhhhcCCCccceeecceEEEEEHHHHHHcCCHHHHhhC-cccHHHHHHHHHHcCCcEEEE
Confidence 0 1 1124799999999999999999975444 36999999999 999877654
No 28
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=98.86 E-value=2.2e-08 Score=92.62 Aligned_cols=153 Identities=19% Similarity=0.191 Sum_probs=97.0
Q ss_pred cCCCCcCCceEEEEEeecCchHHHHHHHHHHHHHHhhccc--ceeEEEEEEcc---------------------ccccch
Q psy5933 125 EPTDCIPQHQVAIIVPYMNREGQLKTFLLHIHQFLQKQFI--SYQIFVIEQRH---------------------PAEFNR 181 (406)
Q Consensus 125 ~P~~C~~~~kVAIIIPyRnR~~hL~~fL~~L~p~L~rQ~l--~y~I~VIeQ~d---------------------~g~FNR 181 (406)
+.+.+.+..+++||||.+|+++.|..+|..+. ++... .++|+|+.... ....++
T Consensus 21 ~~~~~~~~~~isVvip~~n~~~~l~~~l~si~---~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~v~~i~~~~~~g~ 97 (251)
T cd06439 21 SLPDPAYLPTVTIIIPAYNEEAVIEAKLENLL---ALDYPRDRLEIIVVSDGSTDGTAEIAREYADKGVKLLRFPERRGK 97 (251)
T ss_pred CCCCCCCCCEEEEEEecCCcHHHHHHHHHHHH---hCcCCCCcEEEEEEECCCCccHHHHHHHHhhCcEEEEEcCCCCCh
Confidence 45567778899999999999999999988874 22211 26776664211 124678
Q ss_pred hhhhhHHHHHHhhcCCccEEEEecCCCCCCCCce--eeeeCCCc-------ceeEEecc------c--cccc--------
Q psy5933 182 GKLLNIGYIEALKIKPFHCFIFHDVDLMPTNPNN--IYACTKQP-------RHMSVAID------T--FNYE-------- 236 (406)
Q Consensus 182 akLLNvG~~eA~k~~~~Dc~IFhDVDLIp~~d~n--lY~c~~~P-------rHlS~~~d------k--f~yr-------- 236 (406)
+.++|.|+..| ..|+++|.|.|.++.++.. +...-..+ .......+ . +.+.
T Consensus 98 ~~a~n~gi~~a----~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (251)
T cd06439 98 AAALNRALALA----TGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELVIVDGGGSGSGEGLYWKYENWLKRAES 173 (251)
T ss_pred HHHHHHHHHHc----CCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEEecCCcccchhHHHHHHHHHHHHHHHH
Confidence 88999999987 4599999999999987642 00000000 00000000 0 0000
Q ss_pred -CC-ccccccceeeecHhhhhhcCCCCCCCccCCCCchhHHHHH-HCCCeEEecccc
Q psy5933 237 -LP-YCTIFGGAIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQRL-SNYYSICRFSKQ 290 (406)
Q Consensus 237 -lp-y~~~fGGv~a~~kedF~kVNGFdN~fwGWGGEDdDL~~RL-~~Glki~R~~~~ 290 (406)
.. .....|+.+++.++-|. ||+... +.||.+|..|+ ..|.++...+..
T Consensus 174 ~~~~~~~~~g~~~~~rr~~~~---~~~~~~---~~eD~~l~~~~~~~G~~~~~~~~~ 224 (251)
T cd06439 174 RLGSTVGANGAIYAIRRELFR---PLPADT---INDDFVLPLRIARQGYRVVYEPDA 224 (251)
T ss_pred hcCCeeeecchHHHhHHHHhc---CCCccc---chhHHHHHHHHHHcCCeEEecccc
Confidence 00 12244566677777676 776654 35999999999 999988766543
No 29
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=98.84 E-value=2.4e-08 Score=90.84 Aligned_cols=144 Identities=17% Similarity=0.237 Sum_probs=79.9
Q ss_pred eEEEEEeecCchHHHHHHHHHHHHHHhhcccceeEEEEEEccc----------------------------cccchhhhh
Q psy5933 134 QVAIIVPYMNREGQLKTFLLHIHQFLQKQFISYQIFVIEQRHP----------------------------AEFNRGKLL 185 (406)
Q Consensus 134 kVAIIIPyRnR~~hL~~fL~~L~p~L~rQ~l~y~I~VIeQ~d~----------------------------g~FNRakLL 185 (406)
+|+||||.+|+.+.|...|..+. ....-+++|+|+....+ ++-.|+..+
T Consensus 2 ~v~Vvip~~~~~~~l~~~l~sl~---~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~vi~~~~~~g~~~k~~a~ 78 (228)
T PF13641_consen 2 RVSVVIPAYNEDDVLRRCLESLL---AQDYPRLEVVVVDDGSDDETAEILRALAARYPRVRVRVIRRPRNPGPGGKARAL 78 (228)
T ss_dssp -EEEE--BSS-HHHHHHHHHHHT---TSHHHTEEEEEEEE-SSS-GCTTHHHHHHTTGG-GEEEEE----HHHHHHHHHH
T ss_pred EEEEEEEecCCHHHHHHHHHHHH---cCCCCCeEEEEEECCCChHHHHHHHHHHHHcCCCceEEeecCCCCCcchHHHHH
Confidence 59999999999999988888773 22124567776642211 111245566
Q ss_pred hHHHHHHhhcCCccEEEEecCCCCCCCCcee-----e------------eeCCCcceeEEecccccc----------c--
Q psy5933 186 NIGYIEALKIKPFHCFIFHDVDLMPTNPNNI-----Y------------ACTKQPRHMSVAIDTFNY----------E-- 236 (406)
Q Consensus 186 NvG~~eA~k~~~~Dc~IFhDVDLIp~~d~nl-----Y------------~c~~~PrHlS~~~dkf~y----------r-- 236 (406)
|.|+..+ .+|+++|.|.|.+++++... + .+......+....+ +.+ .
T Consensus 79 n~~~~~~----~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 153 (228)
T PF13641_consen 79 NEALAAA----RGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDNDRNWLTRLQD-LFFARWHLRFRSGRRA 153 (228)
T ss_dssp HHHHHH-------SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTCCCEEEE-TT---S-EETTTS-TT-B-
T ss_pred HHHHHhc----CCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCCCCHHHHHHH-HHHhhhhhhhhhhhcc
Confidence 7777765 58999999999999887531 1 01111111121111 100 0
Q ss_pred CCccccccceeeecHhhhhhcCCCCCCCccCCCCchhHHHHH-HCCCeEEecc
Q psy5933 237 LPYCTIFGGAIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQRL-SNYYSICRFS 288 (406)
Q Consensus 237 lpy~~~fGGv~a~~kedF~kVNGFdN~fwGWGGEDdDL~~RL-~~Glki~R~~ 288 (406)
.......|+.+++.++.|.+++||+. .-.+||.||..|+ .+|.++.-.+
T Consensus 154 ~~~~~~~G~~~~~rr~~~~~~g~fd~---~~~~eD~~l~~r~~~~G~~~~~~~ 203 (228)
T PF13641_consen 154 LGVAFLSGSGMLFRRSALEEVGGFDP---FILGEDFDLCLRLRAAGWRIVYAP 203 (228)
T ss_dssp ---S-B--TEEEEEHHHHHHH-S--S---SSSSHHHHHHHHHHHTT--EEEEE
T ss_pred cceeeccCcEEEEEHHHHHHhCCCCC---CCcccHHHHHHHHHHCCCcEEEEC
Confidence 11122458899999999999999999 3445999999999 9999988754
No 30
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.81 E-value=2.5e-08 Score=89.64 Aligned_cols=139 Identities=15% Similarity=0.222 Sum_probs=89.8
Q ss_pred EEEeecCchHHHHHHHHHHHHHHhhcccc--eeEEEEEEcccc------------------------ccc--hhhhhhHH
Q psy5933 137 IIVPYMNREGQLKTFLLHIHQFLQKQFIS--YQIFVIEQRHPA------------------------EFN--RGKLLNIG 188 (406)
Q Consensus 137 IIIPyRnR~~hL~~fL~~L~p~L~rQ~l~--y~I~VIeQ~d~g------------------------~FN--RakLLNvG 188 (406)
||||.+|+.+.|..+|..+. .+..-. ++|+||...... +.| ++.++|.|
T Consensus 1 viip~~n~~~~l~~~l~sl~---~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~v~~~~~~~~~~~g~~~a~n~g 77 (229)
T cd04192 1 VVIAARNEAENLPRLLQSLS---ALDYPKEKFEVILVDDHSTDGTVQILEFAAAKPNFQLKILNNSRVSISGKKNALTTA 77 (229)
T ss_pred CEEEecCcHHHHHHHHHHHH---hCCCCCCceEEEEEcCCCCcChHHHHHHHHhCCCcceEEeeccCcccchhHHHHHHH
Confidence 79999999999999998773 332233 788888643210 122 34567888
Q ss_pred HHHHhhcCCccEEEEecCCCCCCCCcee--ee-eCC-------CcceeEEecccc--------------------cccCC
Q psy5933 189 YIEALKIKPFHCFIFHDVDLMPTNPNNI--YA-CTK-------QPRHMSVAIDTF--------------------NYELP 238 (406)
Q Consensus 189 ~~eA~k~~~~Dc~IFhDVDLIp~~d~nl--Y~-c~~-------~PrHlS~~~dkf--------------------~yrlp 238 (406)
+..| +.|+++|.|.|.++.++..- .. ... .+.... ..+.+ +...+
T Consensus 78 ~~~~----~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (229)
T cd04192 78 IKAA----KGDWIVTTDADCVVPSNWLLTFVAFIQKEQIGLVAGPVIYF-KGKSLLAKFQRLDWLSLLGLIAGSFGLGKP 152 (229)
T ss_pred HHHh----cCCEEEEECCCcccCHHHHHHHHHHhhcCCCcEEeeeeeec-CCccHHHHHHHHHHHHHHHHHhhHHHhcCc
Confidence 8776 67999999999999888531 10 001 011111 00000 00011
Q ss_pred ccccccceeeecHhhhhhcCCCCCCCccCCCCchhHHHHH-HCCC-eEE
Q psy5933 239 YCTIFGGAIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQRL-SNYY-SIC 285 (406)
Q Consensus 239 y~~~fGGv~a~~kedF~kVNGFdN~fwGWGGEDdDL~~RL-~~Gl-ki~ 285 (406)
....|+.+++.++-|.+++||++.+- -..||+|+..|+ .+|. ++.
T Consensus 153 -~~~~g~~~~~rr~~~~~~ggf~~~~~-~~~eD~~~~~~~~~~g~~~~~ 199 (229)
T cd04192 153 -FMCNGANMAYRKEAFFEVGGFEGNDH-IASGDDELLLAKVASKYPKVA 199 (229)
T ss_pred -cccccceEEEEHHHHHHhcCCccccc-cccCCHHHHHHHHHhCCCCEE
Confidence 12347788999999999999998654 356899999999 9998 543
No 31
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=98.78 E-value=3.7e-08 Score=89.82 Aligned_cols=145 Identities=14% Similarity=0.128 Sum_probs=91.2
Q ss_pred eEEEEEeecCch-HHHHHHHHHHHHHHhhcccceeEEEEEEccc---------------------cccchhhhhhHHHHH
Q psy5933 134 QVAIIVPYMNRE-GQLKTFLLHIHQFLQKQFISYQIFVIEQRHP---------------------AEFNRGKLLNIGYIE 191 (406)
Q Consensus 134 kVAIIIPyRnR~-~hL~~fL~~L~p~L~rQ~l~y~I~VIeQ~d~---------------------g~FNRakLLNvG~~e 191 (406)
+|+||||.+|+. +.|..+|..+. +|. .++|+||....+ ..-.++.++|.|+..
T Consensus 1 ~isVvIp~~ne~~~~l~~~l~sl~----~q~-~~eiivvdd~s~d~~~~~l~~~~~~~~~~v~~~~~~g~~~a~n~g~~~ 75 (235)
T cd06434 1 DVTVIIPVYDEDPDVFRECLRSIL----RQK-PLEIIVVTDGDDEPYLSILSQTVKYGGIFVITVPHPGKRRALAEGIRH 75 (235)
T ss_pred CeEEEEeecCCChHHHHHHHHHHH----hCC-CCEEEEEeCCCChHHHHHHHhhccCCcEEEEecCCCChHHHHHHHHHH
Confidence 489999999999 99999999874 343 677777743321 134567788999987
Q ss_pred HhhcCCccEEEEecCCCCCCCCcee--e-eeC-C-----CcceeEEec--cccc------cc-------------CCccc
Q psy5933 192 ALKIKPFHCFIFHDVDLMPTNPNNI--Y-ACT-K-----QPRHMSVAI--DTFN------YE-------------LPYCT 241 (406)
Q Consensus 192 A~k~~~~Dc~IFhDVDLIp~~d~nl--Y-~c~-~-----~PrHlS~~~--dkf~------yr-------------lpy~~ 241 (406)
| ++|+++|.|.|.++.++..- . .+. . .+....... ..+. +. .....
T Consensus 76 a----~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (235)
T cd06434 76 V----TTDIVVLLDSDTVWPPNALPEMLKPFEDPKVGGVGTNQRILRPRDSKWSFLAAEYLERRNEEIRAAMSYDGGVPC 151 (235)
T ss_pred h----CCCEEEEECCCceeChhHHHHHHHhccCCCEeEEcCceEeecCcccHHHHHHHHHHHHHHHHHHHHHhhCCCEEE
Confidence 7 67999999999999998530 0 111 0 011000000 0000 00 00011
Q ss_pred cccceeeecHhhhhhcCCCCCCC---ccC-----CCCchhHHHHH-HCCCeEEecc
Q psy5933 242 IFGGAIAMLQHQFRQVNGFSNLY---FGW-----GAEDDDLFQRL-SNYYSICRFS 288 (406)
Q Consensus 242 ~fGGv~a~~kedF~kVNGFdN~f---wGW-----GGEDdDL~~RL-~~Glki~R~~ 288 (406)
..|+.+++.++.+.++ ||++.| +++ .+||.+|..|+ ..|.++.-.+
T Consensus 152 ~~G~~~~~rr~~l~~~-~~~~~~~~~~~~~~~~~~~eD~~l~~~~~~~g~~~~~~~ 206 (235)
T cd06434 152 LSGRTAAYRTEILKDF-LFLEEFTNETFMGRRLNAGDDRFLTRYVLSHGYKTVYQY 206 (235)
T ss_pred ccCcHHHHHHHHHhhh-hhHHHhhhhhhcCCCCCcCchHHHHHHHHHCCCeEEEec
Confidence 2244566777777776 666665 222 57999999999 9999877654
No 32
>PRK10063 putative glycosyl transferase; Provisional
Probab=98.72 E-value=2.8e-07 Score=88.24 Aligned_cols=157 Identities=15% Similarity=0.086 Sum_probs=97.8
Q ss_pred ceEEEEEeecCchHHHHHHHHHHHHHHhhcccceeEEEEEEcccc---------------------ccchhhhhhHHHHH
Q psy5933 133 HQVAIIVPYMNREGQLKTFLLHIHQFLQKQFISYQIFVIEQRHPA---------------------EFNRGKLLNIGYIE 191 (406)
Q Consensus 133 ~kVAIIIPyRnR~~hL~~fL~~L~p~L~rQ~l~y~I~VIeQ~d~g---------------------~FNRakLLNvG~~e 191 (406)
++++||||.||.++.|..+|..+....++...+++|+||...... .-..+.++|.|+..
T Consensus 1 ~~vSVIi~~yN~~~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~i~~~~~~~~~i~~i~~~~~G~~~A~N~Gi~~ 80 (248)
T PRK10063 1 MLLSVITVAFRNLEGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTREFLENLNGIFNLRFVSEPDNGIYDAMNKGIAM 80 (248)
T ss_pred CeEEEEEEeCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHHHHHHhcccCCEEEEECCCCCHHHHHHHHHHH
Confidence 379999999999999999999986554444457888888532100 01345789999998
Q ss_pred HhhcCCccEEEEecCCCCCCCCce--eeeeCC-CcceeE--E----eccccc---ccCCcc-----ccccc-eeeecHhh
Q psy5933 192 ALKIKPFHCFIFHDVDLMPTNPNN--IYACTK-QPRHMS--V----AIDTFN---YELPYC-----TIFGG-AIAMLQHQ 253 (406)
Q Consensus 192 A~k~~~~Dc~IFhDVDLIp~~d~n--lY~c~~-~PrHlS--~----~~dkf~---yrlpy~-----~~fGG-v~a~~ked 253 (406)
| .+|+++|.|.|-++.++.. +..+.. .+.-+. . ..+... -..|.+ ..+.+ .+.+.++-
T Consensus 81 a----~g~~v~~ld~DD~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (248)
T PRK10063 81 A----QGRFALFLNSGDIFHQDAANFVRQLKMQKDNAMIIGDALLDFGDGHKIKRSAKPGWYIYHSLPASHQAIFFPVSG 156 (248)
T ss_pred c----CCCEEEEEeCCcccCcCHHHHHHHHHhCCCCeEEEeeeEEEcCCCcEEEEccCChhHHhcCCCCCCcEEEEEHHH
Confidence 8 5699999998877776631 111111 111000 0 000000 001111 11122 23344444
Q ss_pred hhhcCCCCCCCccCCCCchhHHHHH-HCCCeEEecccceeeEEe
Q psy5933 254 FRQVNGFSNLYFGWGAEDDDLFQRL-SNYYSICRFSKQVSEYVM 296 (406)
Q Consensus 254 F~kVNGFdN~fwGWGGEDdDL~~RL-~~Glki~R~~~~~grY~m 296 (406)
| +.+||++.+. -.||-||..|+ .+|.++...+....+|.|
T Consensus 157 ~-~~~~fd~~~~--~~~Dydl~lrl~~~g~~~~~v~~~l~~y~~ 197 (248)
T PRK10063 157 L-KKWRYDLQYK--VSSDYALAARLYKAGYAFKKLNGLVSEFSM 197 (248)
T ss_pred H-hcCCCCcccc--hHHhHHHHHHHHHcCCcEEEcCceeEEEeC
Confidence 4 5678998873 35999999999 999999888877788753
No 33
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=98.71 E-value=6.6e-08 Score=99.63 Aligned_cols=146 Identities=17% Similarity=0.179 Sum_probs=92.9
Q ss_pred CceEEEEEeecCchHHHHHHHHHHHHHHhhccc---ceeEEEEEEcc-----------------------ccccchhhhh
Q psy5933 132 QHQVAIIVPYMNREGQLKTFLLHIHQFLQKQFI---SYQIFVIEQRH-----------------------PAEFNRGKLL 185 (406)
Q Consensus 132 ~~kVAIIIPyRnR~~hL~~fL~~L~p~L~rQ~l---~y~I~VIeQ~d-----------------------~g~FNRakLL 185 (406)
..+++||||.||.++.|..++..+. +|.. .++|+||.... +..-.+|.++
T Consensus 48 ~P~vsVIIP~yNe~~~l~~~l~sl~----~q~yp~~~~eIiVVDd~StD~T~~il~~~~~~~~~v~v~~~~~~~Gka~Al 123 (439)
T TIGR03111 48 LPDITIIIPVYNSEDTLFNCIESIY----NQTYPIELIDIILANNQSTDDSFQVFCRAQNEFPGLSLRYMNSDQGKAKAL 123 (439)
T ss_pred CCCEEEEEEeCCChHHHHHHHHHHH----hcCCCCCCeEEEEEECCCChhHHHHHHHHHHhCCCeEEEEeCCCCCHHHHH
Confidence 3579999999999999999998873 3432 24677764321 1123467788
Q ss_pred hHHHHHHhhcCCccEEEEecCCCCCCCCceeee---eCCCcce-------eEE-------------eccc---cccc---
Q psy5933 186 NIGYIEALKIKPFHCFIFHDVDLMPTNPNNIYA---CTKQPRH-------MSV-------------AIDT---FNYE--- 236 (406)
Q Consensus 186 NvG~~eA~k~~~~Dc~IFhDVDLIp~~d~nlY~---c~~~PrH-------lS~-------------~~dk---f~yr--- 236 (406)
|.|+..| +.|++++.|.|.+|++|...-. ..+.|.- +.. ...+ +.|-
T Consensus 124 N~gl~~s----~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 199 (439)
T TIGR03111 124 NAAIYNS----IGKYIIHIDSDGKLHKDAIKNMVTRFENNPDIHAMTGVILTDKELIEKTKGRFLKLIRRCEYFEYAQAF 199 (439)
T ss_pred HHHHHHc----cCCEEEEECCCCCcChHHHHHHHHHHHhCCCeEEEEeEEecCchhhhhhcchhhhHhHHhHHHHHHHHH
Confidence 9999876 5789999999999988853100 0011110 000 0000 0110
Q ss_pred ---CCc----c---ccccceeeecHhhhhhcCCCCCCCccCCCCchhHHHHH-H-CCCeEEecc
Q psy5933 237 ---LPY----C---TIFGGAIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQRL-S-NYYSICRFS 288 (406)
Q Consensus 237 ---lpy----~---~~fGGv~a~~kedF~kVNGFdN~fwGWGGEDdDL~~RL-~-~Glki~R~~ 288 (406)
.+. . ...|+.++++|+-+.+++||++..- +||.|+..|+ . .|.++.-.+
T Consensus 200 l~~r~~~s~~~~~~~~sGa~~~~Rr~~l~~vggf~~~~i---~ED~~l~~rl~~~~g~kv~~~~ 260 (439)
T TIGR03111 200 LAGRNFESQVNSLFTLSGAFSAFRRETILKTQLYNSETV---GEDTDMTFQIRELLDGKVYLCE 260 (439)
T ss_pred HhhhHHHHhcCCeEEEccHHHhhhHHHHHHhCCCCCCCc---CccHHHHHHHHHhcCCeEEECC
Confidence 000 0 1235566899999999999998753 6999999999 5 576666544
No 34
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=98.71 E-value=8e-08 Score=96.68 Aligned_cols=150 Identities=17% Similarity=0.172 Sum_probs=92.5
Q ss_pred cCCceEEEEEeecCchHHHHHHHHHHHHHHhhcccceeEEEEEEcccc---------------------------ccc-h
Q psy5933 130 IPQHQVAIIVPYMNREGQLKTFLLHIHQFLQKQFISYQIFVIEQRHPA---------------------------EFN-R 181 (406)
Q Consensus 130 ~~~~kVAIIIPyRnR~~hL~~fL~~L~p~L~rQ~l~y~I~VIeQ~d~g---------------------------~FN-R 181 (406)
.+..+|+||||.||.++.|...|..+. ++..-+|+|+++.+..++ ..| |
T Consensus 38 ~~~p~VSViiP~~nee~~l~~~L~Sl~---~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v~~~~~~G~~~K 114 (373)
T TIGR03472 38 RAWPPVSVLKPLHGDEPELYENLASFC---RQDYPGFQMLFGVQDPDDPALAVVRRLRADFPDADIDLVIDARRHGPNRK 114 (373)
T ss_pred CCCCCeEEEEECCCCChhHHHHHHHHH---hcCCCCeEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEEECCCCCCCChH
Confidence 345679999999999999999888763 333335788776543211 111 1
Q ss_pred hhhhhHHHHHHhhcCCccEEEEecCCCCCCCCcee-----e--------eeCC--Cc-ceeE-----Eecccccc-----
Q psy5933 182 GKLLNIGYIEALKIKPFHCFIFHDVDLMPTNPNNI-----Y--------ACTK--QP-RHMS-----VAIDTFNY----- 235 (406)
Q Consensus 182 akLLNvG~~eA~k~~~~Dc~IFhDVDLIp~~d~nl-----Y--------~c~~--~P-rHlS-----~~~dkf~y----- 235 (406)
...++.++++| .+|+++|.|.|.++++|..- + .|.- .| ..+. ...+ ..|
T Consensus 115 ~~~l~~~~~~a----~ge~i~~~DaD~~~~p~~L~~lv~~~~~~~v~~V~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~ 189 (373)
T TIGR03472 115 VSNLINMLPHA----RHDILVIADSDISVGPDYLRQVVAPLADPDVGLVTCLYRGRPVPGFWSRLGAMGIN-HNFLPSVM 189 (373)
T ss_pred HHHHHHHHHhc----cCCEEEEECCCCCcChhHHHHHHHHhcCCCcceEeccccCCCCCCHHHHHHHHHhh-hhhhHHHH
Confidence 12233344444 78999999999999888531 0 1110 00 0000 0000 000
Q ss_pred ---cC-CccccccceeeecHhhhhhcCCCCCCCccCCCCchhHHHHH-HCCCeEEecc
Q psy5933 236 ---EL-PYCTIFGGAIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQRL-SNYYSICRFS 288 (406)
Q Consensus 236 ---rl-py~~~fGGv~a~~kedF~kVNGFdN~fwGWGGEDdDL~~RL-~~Glki~R~~ 288 (406)
.+ ......|.+++++|+.|.+++||++...-. .||.||..|+ .+|.++.-.+
T Consensus 190 ~~~~~~~~~~~~G~~~a~RR~~l~~iGGf~~~~~~~-~ED~~l~~~i~~~G~~v~~~~ 246 (373)
T TIGR03472 190 VARALGRARFCFGATMALRRATLEAIGGLAALAHHL-ADDYWLGELVRALGLRVVLAP 246 (373)
T ss_pred HHHhccCCccccChhhheeHHHHHHcCChHHhcccc-hHHHHHHHHHHHcCCeEEecc
Confidence 00 011245778899999999999998633222 4999999999 9999987643
No 35
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=98.64 E-value=2.2e-07 Score=75.71 Aligned_cols=125 Identities=18% Similarity=0.253 Sum_probs=89.0
Q ss_pred EEEeecCchHHHHHHHHHHHHHHhhcccceeEEEEEEcc-----------------------ccccchhhhhhHHHHHHh
Q psy5933 137 IIVPYMNREGQLKTFLLHIHQFLQKQFISYQIFVIEQRH-----------------------PAEFNRGKLLNIGYIEAL 193 (406)
Q Consensus 137 IIIPyRnR~~hL~~fL~~L~p~L~rQ~l~y~I~VIeQ~d-----------------------~g~FNRakLLNvG~~eA~ 193 (406)
||||.+++.+.|...+..+. +.+...++|+++.... .+...++..+|.|+..+
T Consensus 1 iii~~~~~~~~l~~~l~s~~---~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~- 76 (156)
T cd00761 1 VIIPAYNEEPYLERCLESLL---AQTYPNFEVIVVDDGSTDGTLEILEEYAKKDPRVIRVINEENQGLAAARNAGLKAA- 76 (156)
T ss_pred CEEeecCcHHHHHHHHHHHH---hCCccceEEEEEeCCCCccHHHHHHHHHhcCCCeEEEEecCCCChHHHHHHHHHHh-
Confidence 68999999999988888774 2222456677664321 22467788888888876
Q ss_pred hcCCccEEEEecCCCCCCCCceeee--e-CCCcc-eeEEecccccccCCccccccceeeecHhhhhhcCCCCCCCccCCC
Q psy5933 194 KIKPFHCFIFHDVDLMPTNPNNIYA--C-TKQPR-HMSVAIDTFNYELPYCTIFGGAIAMLQHQFRQVNGFSNLYFGWGA 269 (406)
Q Consensus 194 k~~~~Dc~IFhDVDLIp~~d~nlY~--c-~~~Pr-HlS~~~dkf~yrlpy~~~fGGv~a~~kedF~kVNGFdN~fwGWGG 269 (406)
+.|++++.|.|.++.++..... - ...+. .+... .|.++++++.|.+++|+++.+.+| +
T Consensus 77 ---~~d~v~~~d~D~~~~~~~~~~~~~~~~~~~~~~~v~~--------------~~~~~~~~~~~~~~~~~~~~~~~~-~ 138 (156)
T cd00761 77 ---RGEYILFLDADDLLLPDWLERLVAELLADPEADAVGG--------------PGNLLFRRELLEEIGGFDEALLSG-E 138 (156)
T ss_pred ---cCCEEEEECCCCccCccHHHHHHHHHhcCCCceEEec--------------cchheeeHHHHHHhCCcchHhcCC-c
Confidence 6899999999999988753111 0 00111 11111 089999999999999999998665 8
Q ss_pred CchhHHHHH-HCCCe
Q psy5933 270 EDDDLFQRL-SNYYS 283 (406)
Q Consensus 270 EDdDL~~RL-~~Glk 283 (406)
||.++..++ ..|..
T Consensus 139 ed~~~~~~~~~~g~~ 153 (156)
T cd00761 139 EDDDFLLRLLRGGKV 153 (156)
T ss_pred chHHHHHHHHhhccc
Confidence 999999999 77643
No 36
>PRK10018 putative glycosyl transferase; Provisional
Probab=98.63 E-value=3.9e-07 Score=89.31 Aligned_cols=157 Identities=16% Similarity=0.194 Sum_probs=96.4
Q ss_pred CceEEEEEeecCchHHHHHHHHHHHHHHhhcccceeEEEEEEccc-----------------------cccchhhhhhHH
Q psy5933 132 QHQVAIIVPYMNREGQLKTFLLHIHQFLQKQFISYQIFVIEQRHP-----------------------AEFNRGKLLNIG 188 (406)
Q Consensus 132 ~~kVAIIIPyRnR~~hL~~fL~~L~p~L~rQ~l~y~I~VIeQ~d~-----------------------g~FNRakLLNvG 188 (406)
...|+||||.||+++.|...|..+ +.+..-+++|+||..... .....+.++|.|
T Consensus 4 ~p~VSVIip~yN~~~~l~~~l~Sv---l~Qt~~~~EiIVVDDgS~~~~~~~~~~~~~~~~ri~~i~~~~n~G~~~a~N~g 80 (279)
T PRK10018 4 NPLISIYMPTWNRQQLAIRAIKSV---LRQDYSNWEMIIVDDCSTSWEQLQQYVTALNDPRITYIHNDINSGACAVRNQA 80 (279)
T ss_pred CCEEEEEEEeCCCHHHHHHHHHHH---HhCCCCCeEEEEEECCCCCHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHH
Confidence 457999999999999987766655 444445689999874322 012234678999
Q ss_pred HHHHhhcCCccEEEEecCCCCCCCCcee---------------e----eeCCC----cceeEE-ecccccccC-Cccccc
Q psy5933 189 YIEALKIKPFHCFIFHDVDLMPTNPNNI---------------Y----ACTKQ----PRHMSV-AIDTFNYEL-PYCTIF 243 (406)
Q Consensus 189 ~~eA~k~~~~Dc~IFhDVDLIp~~d~nl---------------Y----~c~~~----PrHlS~-~~dkf~yrl-py~~~f 243 (406)
+..| .+|+++|.|.|-+..++... | .|... |..... ....+.+.. -...++
T Consensus 81 i~~a----~g~~I~~lDaDD~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~n~i 156 (279)
T PRK10018 81 IMLA----QGEYITGIDDDDEWTPNRLSVFLAHKQQLVTHAFLYANDYVCQGEVYSQPASLPLYPKSPYSRRLFYKRNII 156 (279)
T ss_pred HHHc----CCCEEEEECCCCCCCccHHHHHHHHHHhCCCccEEEccceeecCcccccccccCCCCCCCCCHHHHHHhcCc
Confidence 9887 67999999999998887421 1 11100 000000 000011100 013345
Q ss_pred cceeeecHhhhhhcCCCCCCCccCCCCchhHHHHH-HCCCeEEecccceeeEEeccC
Q psy5933 244 GGAIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQRL-SNYYSICRFSKQVSEYVMLNH 299 (406)
Q Consensus 244 GGv~a~~kedF~kVNGFdN~fwGWGGEDdDL~~RL-~~Glki~R~~~~~grY~ml~H 299 (406)
|..+.+ .....+..||++.+. .+||-||..|+ ..|-.....+.....| ++.|
T Consensus 157 g~~~~~-~~~~~~~~~fd~~~~--~~eDydlwlrl~~~~~~~~~~~~~l~~y-~~~~ 209 (279)
T PRK10018 157 GNQVFT-WAWRFKECLFDTELK--AAQDYDIFLRMVVEYGEPWKVEEATQIL-HINH 209 (279)
T ss_pred Cceeee-hhhhhhhcccCCCCC--ccccHHHHHHHHHhcCceEeeccceEEE-EcCC
Confidence 655544 444456678999876 58999999999 8876666555444555 4555
No 37
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=98.52 E-value=4.3e-07 Score=99.50 Aligned_cols=148 Identities=14% Similarity=0.207 Sum_probs=95.3
Q ss_pred CcCCceEEEEEeecCchHHH-HHHHHHHHHHHhhccc---ceeEEEEEEcc-----------------------------
Q psy5933 129 CIPQHQVAIIVPYMNREGQL-KTFLLHIHQFLQKQFI---SYQIFVIEQRH----------------------------- 175 (406)
Q Consensus 129 C~~~~kVAIIIPyRnR~~hL-~~fL~~L~p~L~rQ~l---~y~I~VIeQ~d----------------------------- 175 (406)
-....+|+||||.||.+..+ +..+..+ .+|.- .++|+|+...+
T Consensus 127 ~~~~P~VsViIP~yNE~~~iv~~tl~s~----~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~~~ 202 (713)
T TIGR03030 127 PEEWPTVDVFIPTYNEDLEIVATTVLAA----KNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCRKL 202 (713)
T ss_pred cccCCeeEEEEcCCCCCHHHHHHHHHHH----HhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHHHc
Confidence 34456899999999998654 5666654 23322 47889887542
Q ss_pred --------ccccchhhhhhHHHHHHhhcCCccEEEEecCCCCCCCCceeee------eCC-----CcceeEEeccccc--
Q psy5933 176 --------PAEFNRGKLLNIGYIEALKIKPFHCFIFHDVDLMPTNPNNIYA------CTK-----QPRHMSVAIDTFN-- 234 (406)
Q Consensus 176 --------~g~FNRakLLNvG~~eA~k~~~~Dc~IFhDVDLIp~~d~nlY~------c~~-----~PrHlS~~~dkf~-- 234 (406)
+..-.||..+|.|++.| ++|++++.|.|.+|.+|...-. -++ .|.++. ..+.+.
T Consensus 203 ~v~yi~r~~n~~~KAgnLN~al~~a----~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v~~Vqtp~~f~-~p~~~~~n 277 (713)
T TIGR03030 203 GVNYITRPRNVHAKAGNINNALKHT----DGELILIFDADHVPTRDFLQRTVGWFVEDPKLFLVQTPHFFV-SPDPIERN 277 (713)
T ss_pred CcEEEECCCCCCCChHHHHHHHHhc----CCCEEEEECCCCCcChhHHHHHHHHHHhCCCEEEEeCCeecc-CCCHHhhh
Confidence 01233566788998876 6799999999999998863110 000 121111 000000
Q ss_pred --------------cc------CCc--cccccceeeecHhhhhhcCCCCCCCccCCCCchhHHHHH-HCCCeEEecc
Q psy5933 235 --------------YE------LPY--CTIFGGAIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQRL-SNYYSICRFS 288 (406)
Q Consensus 235 --------------yr------lpy--~~~fGGv~a~~kedF~kVNGFdN~fwGWGGEDdDL~~RL-~~Glki~R~~ 288 (406)
|. -.+ ..+.|..+.+.|+.|.+++||++..- .||.|+..|+ .+|.++.-.+
T Consensus 278 l~~~~~~~~e~~~f~~~i~~g~~~~~~~~~~Gs~~~iRR~al~~iGGf~~~~v---tED~~l~~rL~~~G~~~~y~~ 351 (713)
T TIGR03030 278 LGTFRRMPNENELFYGLIQDGNDFWNAAFFCGSAAVLRREALDEIGGIAGETV---TEDAETALKLHRRGWNSAYLD 351 (713)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHhhhCCeeecCceeEEEHHHHHHcCCCCCCCc---CcHHHHHHHHHHcCCeEEEec
Confidence 00 001 11347778899999999999998654 6999999999 9999865543
No 38
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=98.48 E-value=1.4e-06 Score=78.74 Aligned_cols=143 Identities=17% Similarity=0.219 Sum_probs=91.9
Q ss_pred EEEeecCchHHHHHHHHHHHHHHhhcccceeEEEEEEcc-----------------------ccccchhhhhhHHHHHHh
Q psy5933 137 IIVPYMNREGQLKTFLLHIHQFLQKQFISYQIFVIEQRH-----------------------PAEFNRGKLLNIGYIEAL 193 (406)
Q Consensus 137 IIIPyRnR~~hL~~fL~~L~p~L~rQ~l~y~I~VIeQ~d-----------------------~g~FNRakLLNvG~~eA~ 193 (406)
||||.||++++|..+|..+..... ...++|+||.... ......+.++|.|++.|
T Consensus 1 ViIp~yn~~~~l~~~l~sl~~q~~--~~~~eiiiVDd~S~d~t~~~~~~~~~~~~~i~~~~~~~n~G~~~a~n~g~~~a- 77 (224)
T cd06442 1 IIIPTYNERENIPELIERLDAALK--GIDYEIIVVDDNSPDGTAEIVRELAKEYPRVRLIVRPGKRGLGSAYIEGFKAA- 77 (224)
T ss_pred CeEeccchhhhHHHHHHHHHHhhc--CCCeEEEEEeCCCCCChHHHHHHHHHhCCceEEEecCCCCChHHHHHHHHHHc-
Confidence 799999999999999998853221 2568888885321 11345568899999988
Q ss_pred hcCCccEEEEecCCCCCCCCce--eee--eCCCc------ceeEE-eccccc-----------------ccCCccccccc
Q psy5933 194 KIKPFHCFIFHDVDLMPTNPNN--IYA--CTKQP------RHMSV-AIDTFN-----------------YELPYCTIFGG 245 (406)
Q Consensus 194 k~~~~Dc~IFhDVDLIp~~d~n--lY~--c~~~P------rHlS~-~~dkf~-----------------yrlpy~~~fGG 245 (406)
..|+++|.|.|.++.++.. +.. ..+.+ +.... ....+. ...+.....||
T Consensus 78 ---~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (224)
T cd06442 78 ---RGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGSRYVEGGGVEGWGLKRKLISRGANLLARLLLGRKVSDPTSG 154 (224)
T ss_pred ---CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEeeeecCCccCCCcHHHHHHHHHHHHHHHHHcCCCCCCCCCc
Confidence 4599999999999877642 111 11111 10000 000000 01122345578
Q ss_pred eeeecHhhhhhcCCCCCCCccCC-CCchhHHHHH-HCCCeEEecc
Q psy5933 246 AIAMLQHQFRQVNGFSNLYFGWG-AEDDDLFQRL-SNYYSICRFS 288 (406)
Q Consensus 246 v~a~~kedF~kVNGFdN~fwGWG-GEDdDL~~RL-~~Glki~R~~ 288 (406)
.++++++.+.+++ +.+.+.| .+|.||..|+ .+|.++...+
T Consensus 155 ~~~~~r~~~~~ig---~~~~~~~~~~~~~l~~~~~~~g~~i~~~p 196 (224)
T cd06442 155 FRAYRREVLEKLI---DSLVSKGYKFQLELLVRARRLGYRIVEVP 196 (224)
T ss_pred cchhhHHHHHHHh---hhccCCCcEEeHHHHHHHHHcCCeEEEeC
Confidence 8899999999998 2223333 3478999999 9999988865
No 39
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=98.46 E-value=6.9e-07 Score=74.52 Aligned_cols=125 Identities=18% Similarity=0.204 Sum_probs=80.5
Q ss_pred EEEeecCchHHHHHHHHHHHHHHhhcccceeEEEEEEcc------------------------ccccchhhhhhHHHHHH
Q psy5933 137 IIVPYMNREGQLKTFLLHIHQFLQKQFISYQIFVIEQRH------------------------PAEFNRGKLLNIGYIEA 192 (406)
Q Consensus 137 IIIPyRnR~~hL~~fL~~L~p~L~rQ~l~y~I~VIeQ~d------------------------~g~FNRakLLNvG~~eA 192 (406)
||||.+|+.+.|..+|..+. .+..-.++|+|+.... .....++.++|.|+..|
T Consensus 1 Viip~~n~~~~l~~~l~sl~---~q~~~~~~iivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~n~~~~~~ 77 (180)
T cd06423 1 IIVPAYNEEAVIERTIESLL---ALDYPKLEVIVVDDGSTDDTLEILEELAALYIRRVLVVRDKENGGKAGALNAGLRHA 77 (180)
T ss_pred CeecccChHHHHHHHHHHHH---hCCCCceEEEEEeCCCccchHHHHHHHhccccceEEEEEecccCCchHHHHHHHHhc
Confidence 69999999999999998874 2222467777764322 12456788999999877
Q ss_pred hhcCCccEEEEecCCCCCCCCce--e-eeeCCC-------cceeEEecc-----c---ccc------cCC-------ccc
Q psy5933 193 LKIKPFHCFIFHDVDLMPTNPNN--I-YACTKQ-------PRHMSVAID-----T---FNY------ELP-------YCT 241 (406)
Q Consensus 193 ~k~~~~Dc~IFhDVDLIp~~d~n--l-Y~c~~~-------PrHlS~~~d-----k---f~y------rlp-------y~~ 241 (406)
..|+++|.|.|.++.++.. + ...... +........ + ..+ ..+ ...
T Consensus 78 ----~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (180)
T cd06423 78 ----KGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVRVRNGSENLLTRLQAIEYLSIFRLGRRAQSALGGVLV 153 (180)
T ss_pred ----CCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeEEEecCcCcceeccchheecceeeeeeehhheecceee
Confidence 6899999999999987742 1 000000 000000000 0 000 000 123
Q ss_pred cccceeeecHhhhhhcCCCCCCCccCCCCc
Q psy5933 242 IFGGAIAMLQHQFRQVNGFSNLYFGWGAED 271 (406)
Q Consensus 242 ~fGGv~a~~kedF~kVNGFdN~fwGWGGED 271 (406)
..|+.++++++-|.+++||++...| ||
T Consensus 154 ~~g~~~~~~~~~~~~~ggf~~~~~~---eD 180 (180)
T cd06423 154 LSGAFGAFRREALREVGGWDEDTLT---ED 180 (180)
T ss_pred cCchHHHHHHHHHHHhCCccccCcC---CC
Confidence 4578899999999999999999865 66
No 40
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=98.45 E-value=4.4e-07 Score=84.95 Aligned_cols=150 Identities=16% Similarity=0.154 Sum_probs=98.7
Q ss_pred CceEEEEEeecCchHHHHHHHHHHHHHHhhcccceeEEEEEEcc-------------------------ccccchhhhhh
Q psy5933 132 QHQVAIIVPYMNREGQLKTFLLHIHQFLQKQFISYQIFVIEQRH-------------------------PAEFNRGKLLN 186 (406)
Q Consensus 132 ~~kVAIIIPyRnR~~hL~~fL~~L~p~L~rQ~l~y~I~VIeQ~d-------------------------~g~FNRakLLN 186 (406)
..+|+||||.||.++.|..++..+...++... +++|+||.... .+.+..|.++|
T Consensus 8 ~~~vsVvIp~yne~~~l~~~l~~l~~~~~~~~-~~eiivvDdgS~D~t~~i~~~~~~~~~~~~v~~~~~~~n~G~~~a~n 86 (243)
T PLN02726 8 AMKYSIIVPTYNERLNIALIVYLIFKALQDVK-DFEIIVVDDGSPDGTQDVVKQLQKVYGEDRILLRPRPGKLGLGTAYI 86 (243)
T ss_pred CceEEEEEccCCchhhHHHHHHHHHHHhccCC-CeEEEEEeCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHH
Confidence 46899999999999999999988865554322 78888886332 12355678889
Q ss_pred HHHHHHhhcCCccEEEEecCCCCCCCCce--eeee-CC-------CcceeE-Ee------cccc-----c------ccCC
Q psy5933 187 IGYIEALKIKPFHCFIFHDVDLMPTNPNN--IYAC-TK-------QPRHMS-VA------IDTF-----N------YELP 238 (406)
Q Consensus 187 vG~~eA~k~~~~Dc~IFhDVDLIp~~d~n--lY~c-~~-------~PrHlS-~~------~dkf-----~------yrlp 238 (406)
.|+..| ..|+++|.|.|..+.++.. +... .. ..+... .. ..++ + ...+
T Consensus 87 ~g~~~a----~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 162 (243)
T PLN02726 87 HGLKHA----SGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTGTRYVKGGGVHGWDLRRKLTSRGANVLAQTLLWPG 162 (243)
T ss_pred HHHHHc----CCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEEccccCCCCcCCccHHHHHHHHHHHHHHHHHhCCC
Confidence 998877 5799999999999876642 1100 00 000000 00 0000 0 0011
Q ss_pred ccccccceeeecHhhhhhcCCCCCCCccCCCCchhHHHHH-HCCCeEEecc
Q psy5933 239 YCTIFGGAIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQRL-SNYYSICRFS 288 (406)
Q Consensus 239 y~~~fGGv~a~~kedF~kVNGFdN~fwGWGGEDdDL~~RL-~~Glki~R~~ 288 (406)
....-||..+++++-+.++.++.+.. ||. +|.||..|+ .+|+++...|
T Consensus 163 ~~d~~g~~~~~rr~~~~~i~~~~~~~-~~~-~~~el~~~~~~~g~~i~~vp 211 (243)
T PLN02726 163 VSDLTGSFRLYKRSALEDLVSSVVSK-GYV-FQMEIIVRASRKGYRIEEVP 211 (243)
T ss_pred CCcCCCcccceeHHHHHHHHhhccCC-CcE-EehHHHHHHHHcCCcEEEeC
Confidence 23345788899999999997654432 444 579999999 9999999865
No 41
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=98.44 E-value=4.7e-06 Score=81.54 Aligned_cols=153 Identities=19% Similarity=0.199 Sum_probs=100.5
Q ss_pred CceEEEEEeecCchHHHHHHHHHHHHHHhhc------------------cc--ceeEEEEEEccccccchhhhhhHHHHH
Q psy5933 132 QHQVAIIVPYMNREGQLKTFLLHIHQFLQKQ------------------FI--SYQIFVIEQRHPAEFNRGKLLNIGYIE 191 (406)
Q Consensus 132 ~~kVAIIIPyRnR~~hL~~fL~~L~p~L~rQ------------------~l--~y~I~VIeQ~d~g~FNRakLLNvG~~e 191 (406)
..++++||+.+||.+.|..+|..+...--+. +. .-.|.+++-.++.+|-+ ..|.|+++
T Consensus 2 ~~~i~~iiv~yn~~~~l~~~l~~l~~~~~~~~~iv~vDn~s~d~~~~~~~~~~~~~v~~i~~~~NlG~ag--g~n~g~~~ 79 (305)
T COG1216 2 MPKISIIIVTYNRGEDLVECLASLAAQTYPDDVIVVVDNGSTDGSLEALKARFFPNVRLIENGENLGFAG--GFNRGIKY 79 (305)
T ss_pred CcceEEEEEecCCHHHHHHHHHHHhcCCCCCcEEEEccCCCCCCCHHHHHhhcCCcEEEEEcCCCccchh--hhhHHHHH
Confidence 4689999999999999999999884211000 00 11355555555555644 57899999
Q ss_pred HhhcCCccEEEEecCCCCCCCCce--eeeeC--------CCcc--------eeEEec--c-----cc------ccc----
Q psy5933 192 ALKIKPFHCFIFHDVDLMPTNPNN--IYACT--------KQPR--------HMSVAI--D-----TF------NYE---- 236 (406)
Q Consensus 192 A~k~~~~Dc~IFhDVDLIp~~d~n--lY~c~--------~~Pr--------HlS~~~--d-----kf------~yr---- 236 (406)
|.++ ..+++++.+-|.+++.+.. +..|- ..|. +.+... . .. ...
T Consensus 80 a~~~-~~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (305)
T COG1216 80 ALAK-GDDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYIDRRGGESDGLTGGWRASPLLEIAPDLS 158 (305)
T ss_pred HhcC-CCcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcchheeccccccccccceeccccccccccc
Confidence 9762 2338999999988887742 11100 0111 111100 0 00 000
Q ss_pred --CCccc-cccceeeecHhhhhhcCCCCCCCccCCCCchhHHHHH-HCCCeEEecc
Q psy5933 237 --LPYCT-IFGGAIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQRL-SNYYSICRFS 288 (406)
Q Consensus 237 --lpy~~-~fGGv~a~~kedF~kVNGFdN~fwGWGGEDdDL~~RL-~~Glki~R~~ 288 (406)
..... +-|+.+.+.++.|.+|+|||+.|-.+. ||.|+..|+ .+|.++.-.+
T Consensus 159 ~~~~~~~~~~G~~~li~~~~~~~vG~~de~~F~y~-eD~D~~~R~~~~G~~i~~~p 213 (305)
T COG1216 159 SYLEVVASLSGACLLIRREAFEKVGGFDERFFIYY-EDVDLCLRARKAGYKIYYVP 213 (305)
T ss_pred chhhhhhhcceeeeEEcHHHHHHhCCCCcccceee-hHHHHHHHHHHcCCeEEEee
Confidence 01122 568899999999999999999999887 999999999 9999887765
No 42
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.38 E-value=2.9e-06 Score=75.56 Aligned_cols=143 Identities=13% Similarity=0.077 Sum_probs=89.1
Q ss_pred EEEEeecCchHHHHHHHHHHHHHHhhcccceeEEEEEEcccc------------------------ccchhhhhhHHHHH
Q psy5933 136 AIIVPYMNREGQLKTFLLHIHQFLQKQFISYQIFVIEQRHPA------------------------EFNRGKLLNIGYIE 191 (406)
Q Consensus 136 AIIIPyRnR~~hL~~fL~~L~p~L~rQ~l~y~I~VIeQ~d~g------------------------~FNRakLLNvG~~e 191 (406)
+||||.||+.+.|..+|..+. .+..-+++|+||...... .-..+..+|.|+..
T Consensus 1 sIvIp~yn~~~~l~~~l~sl~---~q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~n~g~~~ 77 (214)
T cd04196 1 AVLMATYNGEKYLREQLDSIL---AQTYKNDELIISDDGSTDGTVEIIKEYIDKDPFIIILIRNGKNLGVARNFESLLQA 77 (214)
T ss_pred CEEEEecCcHHHHHHHHHHHH---hCcCCCeEEEEEeCCCCCCcHHHHHHHHhcCCceEEEEeCCCCccHHHHHHHHHHh
Confidence 599999999999998888773 322237899999754321 12344566678776
Q ss_pred HhhcCCccEEEEecCCCCCCCCce--eeee-CCCcceeEE-------eccc-------c---cc------c--CCccccc
Q psy5933 192 ALKIKPFHCFIFHDVDLMPTNPNN--IYAC-TKQPRHMSV-------AIDT-------F---NY------E--LPYCTIF 243 (406)
Q Consensus 192 A~k~~~~Dc~IFhDVDLIp~~d~n--lY~c-~~~PrHlS~-------~~dk-------f---~y------r--lpy~~~f 243 (406)
| ++|+++|.|.|.++.++.. ++.. ...|....+ ..+. + .+ . .......
T Consensus 78 ~----~g~~v~~ld~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (214)
T cd04196 78 A----DGDYVFFCDQDDIWLPDKLERLLKAFLKDDKPLLVYSDLELVDENGNPIGESFFEYQKIKPGTSFNNLLFQNVVT 153 (214)
T ss_pred C----CCCEEEEECCCcccChhHHHHHHHHHhcCCCceEEecCcEEECCCCCCcccccccccccCCccCHHHHHHhCccC
Confidence 5 6899999999998887742 1111 111110000 0000 0 00 0 0112346
Q ss_pred cceeeecHhhhhhcCCCCCCCccCCCCchhHHHHH-HCCCeEEecc
Q psy5933 244 GGAIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQRL-SNYYSICRFS 288 (406)
Q Consensus 244 GGv~a~~kedF~kVNGFdN~fwGWGGEDdDL~~RL-~~Glki~R~~ 288 (406)
|+.++++++-+.+++||++.+ .| .||.++..++ ..| ++.-.+
T Consensus 154 ~~~~~~r~~~~~~~~~~~~~~-~~-~~D~~~~~~~~~~~-~~~~~~ 196 (214)
T cd04196 154 GCTMAFNRELLELALPFPDAD-VI-MHDWWLALLASAFG-KVVFLD 196 (214)
T ss_pred CceeeEEHHHHHhhccccccc-cc-cchHHHHHHHHHcC-ceEEcc
Confidence 788899999999999999885 22 5888888888 644 444433
No 43
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=98.37 E-value=3.4e-06 Score=80.49 Aligned_cols=140 Identities=15% Similarity=0.152 Sum_probs=90.0
Q ss_pred ecCc-hHHHHHHHHHHHHHHhhcccceeEEEEEEc--cc-c----------------ccc--hhhhhhHHHHHHhhcCCc
Q psy5933 141 YMNR-EGQLKTFLLHIHQFLQKQFISYQIFVIEQR--HP-A----------------EFN--RGKLLNIGYIEALKIKPF 198 (406)
Q Consensus 141 yRnR-~~hL~~fL~~L~p~L~rQ~l~y~I~VIeQ~--d~-g----------------~FN--RakLLNvG~~eA~k~~~~ 198 (406)
+||| .+.|+.++..+. .| .++|+||+.. ++ . +-| -|.++|.|++.|.+ .++
T Consensus 2 tyn~~~~~l~~~l~sl~----~q--~~~iiVVDN~S~~~~~~~~~~~~~~~i~~i~~~~N~G~a~a~N~Gi~~a~~-~~~ 74 (281)
T TIGR01556 2 TFNPDLEHLGELITSLP----KQ--VDRIIAVDNSPHSDQPLKNARLRGQKIALIHLGDNQGIAGAQNQGLDASFR-RGV 74 (281)
T ss_pred ccCccHHHHHHHHHHHH----hc--CCEEEEEECcCCCcHhHHHHhccCCCeEEEECCCCcchHHHHHHHHHHHHH-CCC
Confidence 4677 578888887764 33 3678888755 21 0 113 35789999998865 478
Q ss_pred cEEEEecCCCCCCCCce--eeee-CC--------CcceeEE---------eccccc--------ccCCc---ccccccee
Q psy5933 199 HCFIFHDVDLMPTNPNN--IYAC-TK--------QPRHMSV---------AIDTFN--------YELPY---CTIFGGAI 247 (406)
Q Consensus 199 Dc~IFhDVDLIp~~d~n--lY~c-~~--------~PrHlS~---------~~dkf~--------yrlpy---~~~fGGv~ 247 (406)
|+++|.|.|.+|.++.. +..+ .. .|+.+.. ....+. ...+. ....+| +
T Consensus 75 d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg-~ 153 (281)
T TIGR01556 75 QGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRGTSRRLPAIHLDGLLLRQISLDGLTTPQKTSFLISSG-C 153 (281)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCCCcccCCceeecccceeeecccccCCceeccEEEcCc-c
Confidence 99999999999987742 1110 00 1221110 000000 00000 012334 4
Q ss_pred eecHhhhhhcCCCCCCCccCCCCchhHHHHH-HCCCeEEeccc
Q psy5933 248 AMLQHQFRQVNGFSNLYFGWGAEDDDLFQRL-SNYYSICRFSK 289 (406)
Q Consensus 248 a~~kedF~kVNGFdN~fwGWGGEDdDL~~RL-~~Glki~R~~~ 289 (406)
.++++-|.++|||++.|..|+ ||.|+..|+ .+|.++.-.+.
T Consensus 154 li~~~~~~~iG~fde~~fi~~-~D~e~~~R~~~~G~~i~~~~~ 195 (281)
T TIGR01556 154 LITREVYQRLGMMDEELFIDH-VDTEWSLRAQNYGIPLYIDPD 195 (281)
T ss_pred eeeHHHHHHhCCccHhhcccc-hHHHHHHHHHHCCCEEEEeCC
Confidence 699999999999999998765 999999999 99999887653
No 44
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=98.36 E-value=1.6e-06 Score=76.46 Aligned_cols=125 Identities=17% Similarity=0.089 Sum_probs=83.4
Q ss_pred EEEeecCchHHHHHHHHHHHHHHhhcccceeEEEEEEcc-----------------------ccccchhhhhhHHHHHHh
Q psy5933 137 IIVPYMNREGQLKTFLLHIHQFLQKQFISYQIFVIEQRH-----------------------PAEFNRGKLLNIGYIEAL 193 (406)
Q Consensus 137 IIIPyRnR~~hL~~fL~~L~p~L~rQ~l~y~I~VIeQ~d-----------------------~g~FNRakLLNvG~~eA~ 193 (406)
||||.+|+.+.|..+|..+...+.+....++|+|+.... ...+.++.++|.|++.|
T Consensus 1 viIp~~n~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~i~~i~~~~n~G~~~a~n~g~~~a- 79 (181)
T cd04187 1 IVVPVYNEEENLPELYERLKAVLESLGYDYEIIFVDDGSTDRTLEILRELAARDPRVKVIRLSRNFGQQAALLAGLDHA- 79 (181)
T ss_pred CEEeecCchhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCCccHHHHHHHHHhhCCCEEEEEecCCCCcHHHHHHHHHhc-
Confidence 699999999999999999987766555567777774321 12466888999999987
Q ss_pred hcCCccEEEEecCCCCCCCCce--eeeeC-CC---------ccee---EEeccc-------ccccCCccccccceeeecH
Q psy5933 194 KIKPFHCFIFHDVDLMPTNPNN--IYACT-KQ---------PRHM---SVAIDT-------FNYELPYCTIFGGAIAMLQ 251 (406)
Q Consensus 194 k~~~~Dc~IFhDVDLIp~~d~n--lY~c~-~~---------PrHl---S~~~dk-------f~yrlpy~~~fGGv~a~~k 251 (406)
..|+++|.|.|..+.++.. +...- .. ...- .....+ ..+..+....-||..++++
T Consensus 80 ---~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 156 (181)
T cd04187 80 ---RGDAVITMDADLQDPPELIPEMLAKWEEGYDVVYGVRKNRKESWLKRLTSKLFYRLINKLSGVDIPDNGGDFRLMDR 156 (181)
T ss_pred ---CCCEEEEEeCCCCCCHHHHHHHHHHHhCCCcEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCCCCCCCCEEEEcH
Confidence 4699999999999876631 11110 00 0000 000000 0011233445578999999
Q ss_pred hhhhhcCCCCCCCc
Q psy5933 252 HQFRQVNGFSNLYF 265 (406)
Q Consensus 252 edF~kVNGFdN~fw 265 (406)
+.|.+++||++.+.
T Consensus 157 ~~~~~i~~~d~~~~ 170 (181)
T cd04187 157 KVVDALLLLPERHR 170 (181)
T ss_pred HHHHHHHhcCCCCc
Confidence 99999999999875
No 45
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=98.35 E-value=1.6e-06 Score=83.87 Aligned_cols=155 Identities=12% Similarity=0.109 Sum_probs=96.9
Q ss_pred EEEEEeecCchHH-HHHHHHHHHHHHhhccc--ceeEEEEEEcccccc--------c-----------------------
Q psy5933 135 VAIIVPYMNREGQ-LKTFLLHIHQFLQKQFI--SYQIFVIEQRHPAEF--------N----------------------- 180 (406)
Q Consensus 135 VAIIIPyRnR~~h-L~~fL~~L~p~L~rQ~l--~y~I~VIeQ~d~g~F--------N----------------------- 180 (406)
|||+||.||-... |...|..+...|.+|.. .|+|+|+...++..- +
T Consensus 1 ~SIliP~~ne~~~~l~~~l~~~~~~~~~~~~~~~~eI~vldD~~d~~~~~~~~~~~~~l~~~~~~~~~v~~~~r~~~~g~ 80 (254)
T cd04191 1 TAIVMPVYNEDPARVFAGLRAMYESLAKTGLADHFDFFILSDTRDPDIWLAEEAAWLDLCEELGAQGRIYYRRRRENTGR 80 (254)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHHHhcCCcCceEEEEECCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCCCCc
Confidence 6999999998876 77888777766666654 789988865543210 0
Q ss_pred hhhhhhHHHHHHhhcCCccEEEEecCCCCCCCCceeeeeC---CCcce-------eEEeccccc----------c-----
Q psy5933 181 RGKLLNIGYIEALKIKPFHCFIFHDVDLMPTNPNNIYACT---KQPRH-------MSVAIDTFN----------Y----- 235 (406)
Q Consensus 181 RakLLNvG~~eA~k~~~~Dc~IFhDVDLIp~~d~nlY~c~---~~PrH-------lS~~~dkf~----------y----- 235 (406)
|+..+|.+. .+. ...+|++++.|.|.+|++++...... ..|.. .....+.+- |
T Consensus 81 Kag~l~~~~-~~~-~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~vg~vq~~~~~~n~~~~~~~~~~~~~~~~~~~~~ 158 (254)
T cd04191 81 KAGNIADFC-RRW-GSRYDYMVVLDADSLMSGDTIVRLVRRMEANPRAGIIQTAPKLIGAETLFARLQQFANRLYGPVFG 158 (254)
T ss_pred cHHHHHHHH-HHh-CCCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEeCCceeECCCCHHHHHHHHHHHHHHHHHH
Confidence 111222222 111 14679999999999999996421111 11110 000001110 0
Q ss_pred ---c---CCccccccceeeecHhhhhhcCCCCC--CCccCCC----CchhHHHHH-HCCCeEEecccce
Q psy5933 236 ---E---LPYCTIFGGAIAMLQHQFRQVNGFSN--LYFGWGA----EDDDLFQRL-SNYYSICRFSKQV 291 (406)
Q Consensus 236 ---r---lpy~~~fGGv~a~~kedF~kVNGFdN--~fwGWGG----EDdDL~~RL-~~Glki~R~~~~~ 291 (406)
. ..-..++|-++.++++.|.+++|+++ .+-||++ ||.++..|+ .+|.++.-.+..+
T Consensus 159 ~~~~~~~~~~~~~~G~~~~~Rr~al~~~~~~~~i~g~g~~~~~~l~eD~~l~~~~~~~G~ri~~~~~~~ 227 (254)
T cd04191 159 RGLAAWQGGEGNYWGHNAIIRVAAFMEHCALPVLPGRPPFGGHILSHDFVEAALMRRAGWEVRLAPDLE 227 (254)
T ss_pred HHHHHhcCCccCccceEEEEEHHHHHHhcCCccccCCCCCCCCeecHHHHHHHHHHHcCCEEEEccCCc
Confidence 0 00123456789999999999999985 6778964 899999999 9999887655333
No 46
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=98.26 E-value=2.9e-06 Score=94.91 Aligned_cols=145 Identities=20% Similarity=0.238 Sum_probs=91.1
Q ss_pred CceEEEEEeecCchH-HHHHHHHHHHHHHhhc--ccceeEEEEEEccc-------------------cccchhhhhhHHH
Q psy5933 132 QHQVAIIVPYMNREG-QLKTFLLHIHQFLQKQ--FISYQIFVIEQRHP-------------------AEFNRGKLLNIGY 189 (406)
Q Consensus 132 ~~kVAIIIPyRnR~~-hL~~fL~~L~p~L~rQ--~l~y~I~VIeQ~d~-------------------g~FNRakLLNvG~ 189 (406)
..+|+||||.||-+. .++..+... +... .-.++|+|+...+. ..-.||-.+|.|+
T Consensus 259 ~P~VsViIPtYNE~~~vv~~tI~a~---l~~dYP~~k~EViVVDDgS~D~t~~la~~~~v~yI~R~~n~~gKAGnLN~aL 335 (852)
T PRK11498 259 WPTVDIFVPTYNEDLNVVKNTIYAS---LGIDWPKDKLNIWILDDGGREEFRQFAQEVGVKYIARPTHEHAKAGNINNAL 335 (852)
T ss_pred CCcEEEEEecCCCcHHHHHHHHHHH---HhccCCCCceEEEEEeCCCChHHHHHHHHCCcEEEEeCCCCcchHHHHHHHH
Confidence 358999999999874 345444433 2211 11367888754321 1123566788898
Q ss_pred HHHhhcCCccEEEEecCCCCCCCCceeee--e-CCC--------cceeEEecccc----------------cccC-----
Q psy5933 190 IEALKIKPFHCFIFHDVDLMPTNPNNIYA--C-TKQ--------PRHMSVAIDTF----------------NYEL----- 237 (406)
Q Consensus 190 ~eA~k~~~~Dc~IFhDVDLIp~~d~nlY~--c-~~~--------PrHlS~~~dkf----------------~yrl----- 237 (406)
+.| ++|++++.|.|.+|++++.... + .+. |.++. ..|.+ -|..
T Consensus 336 ~~a----~GEyIavlDAD~ip~pdfL~~~V~~f~~dP~VglVQtp~~f~-n~dp~~rnl~~~~~~~~e~~~fy~~iq~g~ 410 (852)
T PRK11498 336 KYA----KGEFVAIFDCDHVPTRSFLQMTMGWFLKDKKLAMMQTPHHFF-SPDPFERNLGRFRKTPNEGTLFYGLVQDGN 410 (852)
T ss_pred HhC----CCCEEEEECCCCCCChHHHHHHHHHHHhCCCeEEEEcceecc-CCchHHHhhHHHhhcccchhHHHHHHHhHH
Confidence 876 6799999999999998863211 1 011 21111 00000 0100
Q ss_pred -Cc--cccccceeeecHhhhhhcCCCCCCCccCCCCchhHHHHH-HCCCeEEec
Q psy5933 238 -PY--CTIFGGAIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQRL-SNYYSICRF 287 (406)
Q Consensus 238 -py--~~~fGGv~a~~kedF~kVNGFdN~fwGWGGEDdDL~~RL-~~Glki~R~ 287 (406)
.+ ..+.|.+..+.++-+.++|||++... .||.|+..|+ .+|.++.-.
T Consensus 411 ~~~~a~~~~Gs~aviRReaLeeVGGfd~~ti---tED~dlslRL~~~Gyrv~yl 461 (852)
T PRK11498 411 DMWDATFFCGSCAVIRRKPLDEIGGIAVETV---TEDAHTSLRLHRRGYTSAYM 461 (852)
T ss_pred HhhcccccccceeeeEHHHHHHhcCCCCCcc---CccHHHHHHHHHcCCEEEEE
Confidence 00 11347778899999999999998743 5999999999 999987653
No 47
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=98.20 E-value=9.9e-06 Score=81.17 Aligned_cols=177 Identities=24% Similarity=0.331 Sum_probs=116.0
Q ss_pred CceEEEEEeecCchH-HHHHHHHHHHHHHhhcccceeEEEEEEccc-------------------------cccchhhhh
Q psy5933 132 QHQVAIIVPYMNREG-QLKTFLLHIHQFLQKQFISYQIFVIEQRHP-------------------------AEFNRGKLL 185 (406)
Q Consensus 132 ~~kVAIIIPyRnR~~-hL~~fL~~L~p~L~rQ~l~y~I~VIeQ~d~-------------------------g~FNRakLL 185 (406)
..+|+||||.||=+. -++..+..+. +..--.++|+++...+. ..=-|+.++
T Consensus 53 ~p~vsviiP~ynE~~~~~~~~l~s~~---~~dyp~~evivv~d~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~gK~~al 129 (439)
T COG1215 53 LPKVSVIIPAYNEEPEVLEETLESLL---SQDYPRYEVIVVDDGSTDETYEILEELGAEYGPNFRVIYPEKKNGGKAGAL 129 (439)
T ss_pred CCceEEEEecCCCchhhHHHHHHHHH---hCCCCCceEEEECCCCChhHHHHHHHHHhhcCcceEEEeccccCccchHHH
Confidence 579999999999777 8888888773 22223367777754210 011134566
Q ss_pred hHHHHHHhhcCCccEEEEecCCCCCCCCceee-----------eeCCCcceeEE--------ecccccc------cCC--
Q psy5933 186 NIGYIEALKIKPFHCFIFHDVDLMPTNPNNIY-----------ACTKQPRHMSV--------AIDTFNY------ELP-- 238 (406)
Q Consensus 186 NvG~~eA~k~~~~Dc~IFhDVDLIp~~d~nlY-----------~c~~~PrHlS~--------~~dkf~y------rlp-- 238 (406)
|.|...| ++|++++.|+|.+|++|.... .+...|+.... ....+.| ..+
T Consensus 130 ~~~l~~~----~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 205 (439)
T COG1215 130 NNGLKRA----KGDVVVILDADTVPEPDALRELVSPFEDPPVGAVVGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRLRAA 205 (439)
T ss_pred HHHHhhc----CCCEEEEEcCCCCCChhHHHHHHhhhcCCCeeEEeCCceeeecCChhhhcchhcchhhhhhHHHhhhhh
Confidence 6666655 689999999999999996411 12223322211 0000111 111
Q ss_pred -----ccccccceeeecHhhhhhcCCCCCCCccCCCCchhHHHHH-HCCCeEEecccceeeEEeccCCCcchhHHHHHHH
Q psy5933 239 -----YCTIFGGAIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQRL-SNYYSICRFSKQVSEYVMLNHAKETEKLERLEKL 312 (406)
Q Consensus 239 -----y~~~fGGv~a~~kedF~kVNGFdN~fwGWGGEDdDL~~RL-~~Glki~R~~~~~grY~ml~Hk~~~~N~~R~~ll 312 (406)
.....|...++.++-+.+++|+++...+ ||.|+..|+ .+|.++.-.+.. +.+ ...|+.+..+
T Consensus 206 ~~~g~~~~~~G~~~~~rr~aL~~~g~~~~~~i~---ED~~lt~~l~~~G~~~~~~~~~------~~~---~~~p~t~~~~ 273 (439)
T COG1215 206 SKGGLISFLSGSSSAFRRSALEEVGGWLEDTIT---EDADLTLRLHLRGYRVVYVPEA------IVW---TEAPETLKEL 273 (439)
T ss_pred hhcCCeEEEcceeeeEEHHHHHHhCCCCCCcee---ccHHHHHHHHHCCCeEEEeecc------eEe---eeCcccHHHH
Confidence 1224578999999999999999998775 999999999 999988765432 122 1345566677
Q ss_pred HcCCceeccCccccc
Q psy5933 313 ENGPFRFKTDGLNTL 327 (406)
Q Consensus 313 ~~~~~r~~~DGLnsl 327 (406)
.+.+.||..-|+..+
T Consensus 274 ~~Qr~RW~~g~~~~~ 288 (439)
T COG1215 274 WRQRLRWARGGLQVL 288 (439)
T ss_pred HHHHHHHHcccceee
Confidence 777888988888877
No 48
>PRK10073 putative glycosyl transferase; Provisional
Probab=98.19 E-value=2.8e-05 Score=77.54 Aligned_cols=153 Identities=16% Similarity=0.221 Sum_probs=91.9
Q ss_pred ceEEEEEeecCchHHHHHHHHHHHHHHhhcccceeEEEEEEccc----------------------cccchhhhhhHHHH
Q psy5933 133 HQVAIIVPYMNREGQLKTFLLHIHQFLQKQFISYQIFVIEQRHP----------------------AEFNRGKLLNIGYI 190 (406)
Q Consensus 133 ~kVAIIIPyRnR~~hL~~fL~~L~p~L~rQ~l~y~I~VIeQ~d~----------------------g~FNRakLLNvG~~ 190 (406)
..|+||||.||+++.|..+|..+. .+...+++|+||+.... ..-..+.++|.|+.
T Consensus 6 p~vSVIIP~yN~~~~L~~~l~Sl~---~Qt~~~~EIIiVdDgStD~t~~i~~~~~~~~~~i~vi~~~n~G~~~arN~gl~ 82 (328)
T PRK10073 6 PKLSIIIPLYNAGKDFRAFMESLI---AQTWTALEIIIVNDGSTDNSVEIAKHYAENYPHVRLLHQANAGVSVARNTGLA 82 (328)
T ss_pred CeEEEEEeccCCHHHHHHHHHHHH---hCCCCCeEEEEEeCCCCccHHHHHHHHHhhCCCEEEEECCCCChHHHHHHHHH
Confidence 479999999999999999998773 33334678877753321 12346778999999
Q ss_pred HHhhcCCccEEEEecCCCCCCCCce-------------eeeeCC-------CcceeEEecccccc----cCC-------c
Q psy5933 191 EALKIKPFHCFIFHDVDLMPTNPNN-------------IYACTK-------QPRHMSVAIDTFNY----ELP-------Y 239 (406)
Q Consensus 191 eA~k~~~~Dc~IFhDVDLIp~~d~n-------------lY~c~~-------~PrHlS~~~dkf~y----rlp-------y 239 (406)
.| .+|+++|.|.|-...++.. +..|.. .+..-....++... ..+ .
T Consensus 83 ~a----~g~yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 158 (328)
T PRK10073 83 VA----TGKYVAFPDADDVVYPTMYETLMTMALEDDLDVAQCNADWCFRDTGETWQSIPSDRLRSTGVLSGPDWLRMALS 158 (328)
T ss_pred hC----CCCEEEEECCCCccChhHHHHHHHHHHhCCCCEEEEccEEEEeCCCccccccccccccccceechHHHHHHHHh
Confidence 88 5699999999998877742 111110 00000000000000 000 0
Q ss_pred cccc-c-ceeeecHhhhhhcCC--CCCCCccCCCCchhHHHHH-HCCCeEEecccceeeEE
Q psy5933 240 CTIF-G-GAIAMLQHQFRQVNG--FSNLYFGWGAEDDDLFQRL-SNYYSICRFSKQVSEYV 295 (406)
Q Consensus 240 ~~~f-G-Gv~a~~kedF~kVNG--FdN~fwGWGGEDdDL~~RL-~~Glki~R~~~~~grY~ 295 (406)
...+ + .-..+.+.+|.+-+| |++ |.-.||.++..++ .++-++.-.+.....|.
T Consensus 159 ~~~~~~~~~~~l~Rr~~l~~~~~~f~~---~~~~eD~~~~~~~~~~~~~v~~~~~~ly~Yr 216 (328)
T PRK10073 159 SRRWTHVVWLGVYRRDFIVKNNIKFEP---GLHHQDIPWTTEVMFNALRVRYTEQSLYKYY 216 (328)
T ss_pred hCCCCccHhHHHHHHHHHHHcCCccCC---CCEeccHHHHHHHHHHCCEEEEECCCEEEEE
Confidence 0001 1 112356666666666 444 4456999999999 88878777766666664
No 49
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=98.18 E-value=1.2e-05 Score=72.86 Aligned_cols=146 Identities=20% Similarity=0.227 Sum_probs=95.2
Q ss_pred EEEeecCchHHHHHHHHHHHHHHhh-cccceeEEEEEEcc------------------------ccccchhhhhhHHHHH
Q psy5933 137 IIVPYMNREGQLKTFLLHIHQFLQK-QFISYQIFVIEQRH------------------------PAEFNRGKLLNIGYIE 191 (406)
Q Consensus 137 IIIPyRnR~~hL~~fL~~L~p~L~r-Q~l~y~I~VIeQ~d------------------------~g~FNRakLLNvG~~e 191 (406)
||||.||.++.|..+|..+...+.+ ....++|+||.... .....++.++|.|++.
T Consensus 1 iiip~yN~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~~~~~~~~~i~~i~~~~n~G~~~a~~~g~~~ 80 (211)
T cd04188 1 VVIPAYNEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKLARKNPALIRVLTLPKNRGKGGAVRAGMLA 80 (211)
T ss_pred CEEcccChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHHHHHhCCCcEEEEEcccCCCcHHHHHHHHHH
Confidence 7999999999999999998766543 23568888885321 1235678899999998
Q ss_pred HhhcCCccEEEEecCCCCCCCCcee--eee--CCC------cceeEEe-----cccc--------c------ccCCcccc
Q psy5933 192 ALKIKPFHCFIFHDVDLMPTNPNNI--YAC--TKQ------PRHMSVA-----IDTF--------N------YELPYCTI 242 (406)
Q Consensus 192 A~k~~~~Dc~IFhDVDLIp~~d~nl--Y~c--~~~------PrHlS~~-----~dkf--------~------yrlpy~~~ 242 (406)
| ..|+++|.|.|..+.++... ... ... ++-.... ...+ . ...++...
T Consensus 81 a----~gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 156 (211)
T cd04188 81 A----RGDYILFADADLATPFEELEKLEEALKTSGYDIAIGSRAHLASAAVVKRSWLRNLLGRGFNFLVRLLLGLGIKDT 156 (211)
T ss_pred h----cCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEEeeccCCcccccccHHHHHHHHHHHHHHHHHcCCCCccc
Confidence 8 45999999999988776421 110 000 0000000 0000 0 01111222
Q ss_pred ccceeeecHhhhhhcCCCCCCCccCCCCchhHHHHH-HCCCeEEecc
Q psy5933 243 FGGAIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQRL-SNYYSICRFS 288 (406)
Q Consensus 243 fGGv~a~~kedF~kVNGFdN~fwGWGGEDdDL~~RL-~~Glki~R~~ 288 (406)
-.|...++++.+.++.+. ....||+ +|.||..|+ .+|+++...+
T Consensus 157 ~~g~~~~~r~~~~~~~~~-~~~~~~~-~d~el~~r~~~~g~~~~~vp 201 (211)
T cd04188 157 QCGFKLFTRDAARRLFPR-LHLERWA-FDVELLVLARRLGYPIEEVP 201 (211)
T ss_pred ccCceeEcHHHHHHHHhh-hhccceE-eeHHHHHHHHHcCCeEEEcC
Confidence 236788999999998754 3345777 699999999 9999888765
No 50
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=98.18 E-value=1.6e-05 Score=84.44 Aligned_cols=150 Identities=22% Similarity=0.294 Sum_probs=96.7
Q ss_pred CceEEEEEeecCchHHHHHHHHHHHHHHhhc-ccceeEEEEE-------------------------Eccccccchhhhh
Q psy5933 132 QHQVAIIVPYMNREGQLKTFLLHIHQFLQKQ-FISYQIFVIE-------------------------QRHPAEFNRGKLL 185 (406)
Q Consensus 132 ~~kVAIIIPyRnR~~hL~~fL~~L~p~L~rQ-~l~y~I~VIe-------------------------Q~d~g~FNRakLL 185 (406)
.++++||||-+|=++.+...+.++ |.++ .-+|+|+|+. +..+++..||..+
T Consensus 65 ~p~vaIlIPA~NE~~vI~~~l~s~---L~~ldY~~~eIiVv~d~ndd~T~~~v~~l~~~~p~v~~vv~~~~gp~~Ka~aL 141 (504)
T PRK14716 65 EKRIAIFVPAWREADVIGRMLEHN---LATLDYENYRIFVGTYPNDPATLREVDRLAARYPRVHLVIVPHDGPTSKADCL 141 (504)
T ss_pred CCceEEEEeccCchhHHHHHHHHH---HHcCCCCCeEEEEEECCCChhHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHH
Confidence 457999999999999988888875 2222 1346666653 2234577899999
Q ss_pred hHHHHHHhh-----cCCccEEEEecCCCCCCCCceee---eeCC-----CcceeEE-----------ecccccc----cC
Q psy5933 186 NIGYIEALK-----IKPFHCFIFHDVDLMPTNPNNIY---ACTK-----QPRHMSV-----------AIDTFNY----EL 237 (406)
Q Consensus 186 NvG~~eA~k-----~~~~Dc~IFhDVDLIp~~d~nlY---~c~~-----~PrHlS~-----------~~dkf~y----rl 237 (406)
|.|+..+.. ...+|+++++|.|.+++++..-. ..++ .|. .+. ..+.|.. ..
T Consensus 142 N~~l~~~~~~e~~~G~~~d~vvi~DAD~~v~Pd~Lr~~~~~~~~~~~VQ~pv-~~~~~~~~~~~ag~y~~ef~~~~~~~l 220 (504)
T PRK14716 142 NWIYQAIFAFERERGIRFAIIVLHDAEDVIHPLELRLYNYLLPRHDFVQLPV-FSLPRDWGEWVAGTYMDEFAESHLKDL 220 (504)
T ss_pred HHHHHHHHHhhhhcCCCcCEEEEEcCCCCcCccHHHHHHhhcCCCCEEecce-eccCCchhHHHHHHHHHHHHHHHHHHH
Confidence 999986532 12469999999999999986311 1111 010 000 0000100 00
Q ss_pred C----c---cccccceeeecHhhhhhc----CC--CCCCCccCCCCchhHHHHH-HCCCeEEecc
Q psy5933 238 P----Y---CTIFGGAIAMLQHQFRQV----NG--FSNLYFGWGAEDDDLFQRL-SNYYSICRFS 288 (406)
Q Consensus 238 p----y---~~~fGGv~a~~kedF~kV----NG--FdN~fwGWGGEDdDL~~RL-~~Glki~R~~ 288 (406)
+ . ....|..++++++.+.++ +| |+++-- -||.|+..|+ .+|.++.-.+
T Consensus 221 ~~r~~LG~~~~~~Gtg~afRR~aLe~l~~~~GG~~fd~~sL---TED~dLglRL~~~G~rv~y~p 282 (504)
T PRK14716 221 PVREALGGLIPSAGVGTAFSRRALERLAAERGGQPFDSDSL---TEDYDIGLRLKRAGFRQIFVR 282 (504)
T ss_pred HHHHhcCCccccCCeeEEeEHHHHHHHHhhcCCCCCCCCCc---chHHHHHHHHHHCCCEEEEec
Confidence 0 0 113366889999999998 33 876533 4999999999 9999976543
No 51
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=98.04 E-value=9.8e-06 Score=70.87 Aligned_cols=123 Identities=14% Similarity=0.221 Sum_probs=79.1
Q ss_pred EEEeecCchHHHHHHHHHHHHHHhhcccceeEEEEEEcc-----------------------ccccchhhhhhHHHHHHh
Q psy5933 137 IIVPYMNREGQLKTFLLHIHQFLQKQFISYQIFVIEQRH-----------------------PAEFNRGKLLNIGYIEAL 193 (406)
Q Consensus 137 IIIPyRnR~~hL~~fL~~L~p~L~rQ~l~y~I~VIeQ~d-----------------------~g~FNRakLLNvG~~eA~ 193 (406)
||||.+|++++|..+|..+.....+ .-.++|+|+.... ......+.++|.|+..|
T Consensus 1 iii~~~n~~~~l~~~l~sl~~~~~~-~~~~eiivvd~~s~d~~~~~~~~~~~~~~~~~~~~~~~n~G~~~a~n~g~~~a- 78 (185)
T cd04179 1 VVIPAYNEEENIPELVERLLAVLEE-GYDYEIIVVDDGSTDGTAEIARELAARVPRVRVIRLSRNFGKGAAVRAGFKAA- 78 (185)
T ss_pred CeecccChHhhHHHHHHHHHHHhcc-CCCEEEEEEcCCCCCChHHHHHHHHHhCCCeEEEEccCCCCccHHHHHHHHHh-
Confidence 6999999999999999988533321 3478888885321 12356788999999988
Q ss_pred hcCCccEEEEecCCCCCCCCce--eeee-CCCcceeE--E----e----cc---cc---------c--ccCCccccccce
Q psy5933 194 KIKPFHCFIFHDVDLMPTNPNN--IYAC-TKQPRHMS--V----A----ID---TF---------N--YELPYCTIFGGA 246 (406)
Q Consensus 194 k~~~~Dc~IFhDVDLIp~~d~n--lY~c-~~~PrHlS--~----~----~d---kf---------~--yrlpy~~~fGGv 246 (406)
..|+++|.|.|..+.++.. +..+ ...+..+. . . .. ++ . ...+.....||.
T Consensus 79 ---~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (185)
T cd04179 79 ---RGDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGSRFVRGGGAGMPLLRRLGSRLFNFLIRLLLGVRISDTQSGF 155 (185)
T ss_pred ---cCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEEeecCCCcccchHHHHHHHHHHHHHHHHHcCCCCcCCCCce
Confidence 4599999999998876632 1111 11000000 0 0 00 00 0 012234467899
Q ss_pred eeecHhhhhhc--CCCCCCC
Q psy5933 247 IAMLQHQFRQV--NGFSNLY 264 (406)
Q Consensus 247 ~a~~kedF~kV--NGFdN~f 264 (406)
++++++-|.++ +|+++.|
T Consensus 156 ~~~~r~~~~~i~~~~~~~~~ 175 (185)
T cd04179 156 RLFRREVLEALLSLLESNGF 175 (185)
T ss_pred eeeHHHHHHHHHhhccccCc
Confidence 99999999999 6777665
No 52
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=98.01 E-value=7.2e-06 Score=81.14 Aligned_cols=113 Identities=21% Similarity=0.337 Sum_probs=79.4
Q ss_pred eeEEEEEEccccccch-hhhhhHHHHHHhhcCCccEEEEecCCCCCCCC-ce----eeee------CCCcc-----eeEE
Q psy5933 166 YQIFVIEQRHPAEFNR-GKLLNIGYIEALKIKPFHCFIFHDVDLMPTNP-NN----IYAC------TKQPR-----HMSV 228 (406)
Q Consensus 166 y~I~VIeQ~d~g~FNR-akLLNvG~~eA~k~~~~Dc~IFhDVDLIp~~d-~n----lY~c------~~~Pr-----HlS~ 228 (406)
+.+.++.-.+..+|.- |+..|.|+..|-.....+++.|.|||+.-..| +. +.+. -+.|. |+.-
T Consensus 62 ~~~~yl~~~s~~~F~s~~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~S~dnF~k~l~~~~ikk~~tnI~a~~vlPV~~LNk 141 (346)
T COG4092 62 PRVLYLDFGSPEPFASETICANNGADYSHEKCESNLVLFLDVDCFGSSDNFAKMLSIATIKKMRTNIDAPLVLPVYHLNK 141 (346)
T ss_pred cceEEEecCCCccccchhhhhhccchhhhccccccEEEEEeccccccHHHHHHHHHHHHHHHHHhccCcceeeeeeecch
Confidence 5777788888889998 99999999988765678999999999988755 21 0000 01111 1110
Q ss_pred e--------ccccc----ccCC----------ccccccceeeecHhhhhhcCCCCCCCccCCCCchhHHHHH
Q psy5933 229 A--------IDTFN----YELP----------YCTIFGGAIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQRL 278 (406)
Q Consensus 229 ~--------~dkf~----yrlp----------y~~~fGGv~a~~kedF~kVNGFdN~fwGWGGEDdDL~~RL 278 (406)
+ .|+|. +.-| +.....|...+.+.+|.+.+||||+|.|.|-||.||..|+
T Consensus 142 ~~~~v~f~~~d~f~d~~i~es~~~~~~~~~~ff~~~~T~~~liN~~~F~~tgGydE~F~GhG~EDfe~~~R~ 213 (346)
T COG4092 142 ADTQVFFDVEDMFLDAMIFESPLAEFRKEDNFFIAPYTNIFLINRRMFSLTGGYDERFRGHGSEDFEFLTRL 213 (346)
T ss_pred hhhhHHHHHHHHhhhhHhhhhHHHHhCcccccccccccceEEEehhHHHHhcCCccccccCCchhHHHHHHH
Confidence 0 00110 0000 1223458999999999999999999999999999999998
No 53
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=97.98 E-value=2.6e-05 Score=69.52 Aligned_cols=75 Identities=21% Similarity=0.342 Sum_probs=57.1
Q ss_pred EEEeecCchHHHHHHHHHHHHHHhhcc---cceeEEEEEEcc--------------------ccccchhhhhhHHHHHHh
Q psy5933 137 IIVPYMNREGQLKTFLLHIHQFLQKQF---ISYQIFVIEQRH--------------------PAEFNRGKLLNIGYIEAL 193 (406)
Q Consensus 137 IIIPyRnR~~hL~~fL~~L~p~L~rQ~---l~y~I~VIeQ~d--------------------~g~FNRakLLNvG~~eA~ 193 (406)
||||.||.++.|..+|..+. +|. -.++|+||.... .....|+.++|.|+..|.
T Consensus 1 VvIp~~ne~~~i~~~l~sl~----~~~~p~~~~eiivvdd~s~D~t~~~~~~~~~~~~~~~~~~~~gk~~aln~g~~~a~ 76 (183)
T cd06438 1 ILIPAHNEEAVIGNTVRSLK----AQDYPRELYRIFVVADNCTDDTAQVARAAGATVLERHDPERRGKGYALDFGFRHLL 76 (183)
T ss_pred CEEeccchHHHHHHHHHHHH----hcCCCCcccEEEEEeCCCCchHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 79999999999999999874 232 357888875322 123468889999999885
Q ss_pred h-cCCccEEEEecCCCCCCCCce
Q psy5933 194 K-IKPFHCFIFHDVDLMPTNPNN 215 (406)
Q Consensus 194 k-~~~~Dc~IFhDVDLIp~~d~n 215 (406)
+ ..++|+++|.|.|.++.++..
T Consensus 77 ~~~~~~d~v~~~DaD~~~~p~~l 99 (183)
T cd06438 77 NLADDPDAVVVFDADNLVDPNAL 99 (183)
T ss_pred hcCCCCCEEEEEcCCCCCChhHH
Confidence 2 246899999999999998853
No 54
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=97.84 E-value=5.1e-05 Score=63.56 Aligned_cols=72 Identities=18% Similarity=0.223 Sum_probs=52.9
Q ss_pred EEEEeecCchHHHHHHHHHHHHHHhhcccceeEEEEEEcc-----------------------ccccchhhhhhHHHHHH
Q psy5933 136 AIIVPYMNREGQLKTFLLHIHQFLQKQFISYQIFVIEQRH-----------------------PAEFNRGKLLNIGYIEA 192 (406)
Q Consensus 136 AIIIPyRnR~~hL~~fL~~L~p~L~rQ~l~y~I~VIeQ~d-----------------------~g~FNRakLLNvG~~eA 192 (406)
+||||.+|+.+.|..+|..+... ....++|+|+.-.. ......+.++|.|+..|
T Consensus 1 Svvip~~n~~~~l~~~l~sl~~q---~~~~~eiivvdd~s~d~~~~~~~~~~~~~~~i~~i~~~~n~g~~~~~n~~~~~a 77 (169)
T PF00535_consen 1 SVVIPTYNEAEYLERTLESLLKQ---TDPDFEIIVVDDGSTDETEEILEEYAESDPNIRYIRNPENLGFSAARNRGIKHA 77 (169)
T ss_dssp EEEEEESS-TTTHHHHHHHHHHH---SGCEEEEEEEECS-SSSHHHHHHHHHCCSTTEEEEEHCCCSHHHHHHHHHHHH-
T ss_pred CEEEEeeCCHHHHHHHHHHHhhc---cCCCEEEEEecccccccccccccccccccccccccccccccccccccccccccc
Confidence 69999999999999999988532 45667777764222 11247889999999998
Q ss_pred hhcCCccEEEEecCCCCCCCCc
Q psy5933 193 LKIKPFHCFIFHDVDLMPTNPN 214 (406)
Q Consensus 193 ~k~~~~Dc~IFhDVDLIp~~d~ 214 (406)
. .++++|.|.|.++.++.
T Consensus 78 ~----~~~i~~ld~D~~~~~~~ 95 (169)
T PF00535_consen 78 K----GEYILFLDDDDIISPDW 95 (169)
T ss_dssp -----SSEEEEEETTEEE-TTH
T ss_pred c----eeEEEEeCCCceEcHHH
Confidence 4 57999999999999884
No 55
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=97.83 E-value=3.4e-05 Score=72.82 Aligned_cols=142 Identities=18% Similarity=0.055 Sum_probs=87.0
Q ss_pred EEEeecCch-HHHHHHHHHHHHHHhhccc----------ceeEEEEEEccccccchhhhh---------hHHHHHHhhcC
Q psy5933 137 IIVPYMNRE-GQLKTFLLHIHQFLQKQFI----------SYQIFVIEQRHPAEFNRGKLL---------NIGYIEALKIK 196 (406)
Q Consensus 137 IIIPyRnR~-~hL~~fL~~L~p~L~rQ~l----------~y~I~VIeQ~d~g~FNRakLL---------NvG~~eA~k~~ 196 (406)
||||.||-+ ..|...|.++. .+..- .++|+||...... =|+||.- |.|+.. .
T Consensus 1 v~ip~yNE~~~~i~~~l~sv~---~q~y~~~~~~~~~~~~~evivv~Dgs~d-~~~gk~~~~~~~~~~~~~~~~~----a 72 (244)
T cd04190 1 VCVTMYNEDEEELARTLDSIL---KNDYPFCARGGDSWKKIVVCVIFDGAIK-KNRGKRDSQLWFFNYFCRVLFP----D 72 (244)
T ss_pred CEEeeecCCHHHHHHHHHHHH---HhhHHHHhcCCCCccEEEEEEEeCCccc-ccCcchHHHHHHHHHHHHHhhc----C
Confidence 799999996 78999998873 33322 6899998766543 3455542 444433 3
Q ss_pred CccEEEEecCCCCCCCCceee---eeCCCcceeE------Eecc--c-------cccc------CCcc-------ccccc
Q psy5933 197 PFHCFIFHDVDLMPTNPNNIY---ACTKQPRHMS------VAID--T-------FNYE------LPYC-------TIFGG 245 (406)
Q Consensus 197 ~~Dc~IFhDVDLIp~~d~nlY---~c~~~PrHlS------~~~d--k-------f~yr------lpy~-------~~fGG 245 (406)
.+|++++.|.|.+++++.... .....|.--. .... . +.|. ..+. ...|.
T Consensus 73 ~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p~vg~v~g~~~~~~~~~~~~~~~q~~ey~~~~~~~~~~~s~~g~~~~~~G~ 152 (244)
T cd04190 73 DPEFILLVDADTKFDPDSIVQLYKAMDKDPEIGGVCGEIHPMGKKQGPLVMYQVFEYAISHWLDKAFESVFGFVTCLPGC 152 (244)
T ss_pred CCCEEEEECCCCcCCHhHHHHHHHHHHhCCCEEEEEeeeEEcCCcchhHHHhHheehhhhhhhcccHHHcCCceEECCCc
Confidence 789999999999999885311 0111121100 0000 0 0110 0111 12355
Q ss_pred eeeecHhhhhhcCCCCCC-----------CccCC------CCchhHHHHH-HCCCeEEe
Q psy5933 246 AIAMLQHQFRQVNGFSNL-----------YFGWG------AEDDDLFQRL-SNYYSICR 286 (406)
Q Consensus 246 v~a~~kedF~kVNGFdN~-----------fwGWG------GEDdDL~~RL-~~Glki~R 286 (406)
.+++.++.+.+++|+... ..|++ +||.+|..|+ .+|.++..
T Consensus 153 ~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ED~~l~~~l~~~G~~~~~ 211 (244)
T cd04190 153 FSMYRIEALKGDNGGKGPLLDYAYLTNTVDSLHKKNNLDLGEDRILCTLLLKAGPKRKY 211 (244)
T ss_pred eEEEEehhhcCCccccccchhhccccCcccchHHHHHHhHhcccceeHHHhccCCccEE
Confidence 778889999999887542 11222 7999999999 99988765
No 56
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=97.80 E-value=6.6e-05 Score=74.95 Aligned_cols=78 Identities=15% Similarity=0.271 Sum_probs=62.8
Q ss_pred CceEEEEEeecCchHHHHHHHHHHHHHHhhcccceeEEEEEEcc------------------------ccccchhhhhhH
Q psy5933 132 QHQVAIIVPYMNREGQLKTFLLHIHQFLQKQFISYQIFVIEQRH------------------------PAEFNRGKLLNI 187 (406)
Q Consensus 132 ~~kVAIIIPyRnR~~hL~~fL~~L~p~L~rQ~l~y~I~VIeQ~d------------------------~g~FNRakLLNv 187 (406)
..+++||||.||.++.|..++..+...+++...+++|++|+... ...|.++.++|.
T Consensus 5 ~~~vSVVIP~yNE~~~i~~~l~~l~~~~~~~~~~~EIIvVDDgS~D~T~~il~~~~~~~~~~v~~i~~~~n~G~~~A~~~ 84 (325)
T PRK10714 5 IKKVSVVIPVYNEQESLPELIRRTTAACESLGKEYEILLIDDGSSDNSAEMLVEAAQAPDSHIVAILLNRNYGQHSAIMA 84 (325)
T ss_pred CCeEEEEEcccCchhhHHHHHHHHHHHHHhCCCCEEEEEEeCCCCCcHHHHHHHHHhhcCCcEEEEEeCCCCCHHHHHHH
Confidence 35699999999999999999999988777666789999986421 123555688889
Q ss_pred HHHHHhhcCCccEEEEecCCCCCCCC
Q psy5933 188 GYIEALKIKPFHCFIFHDVDLMPTNP 213 (406)
Q Consensus 188 G~~eA~k~~~~Dc~IFhDVDLIp~~d 213 (406)
|+..| ++|++++.|.|+...++
T Consensus 85 G~~~A----~gd~vv~~DaD~q~~p~ 106 (325)
T PRK10714 85 GFSHV----TGDLIITLDADLQNPPE 106 (325)
T ss_pred HHHhC----CCCEEEEECCCCCCCHH
Confidence 98887 67999999999987655
No 57
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=97.61 E-value=0.00016 Score=71.84 Aligned_cols=147 Identities=17% Similarity=0.235 Sum_probs=89.9
Q ss_pred CCceEEEEEeecCchHHHHHHHHHHHHHHhhcccceeEEEEEEcccc-----------------------cc--chhhhh
Q psy5933 131 PQHQVAIIVPYMNREGQLKTFLLHIHQFLQKQFISYQIFVIEQRHPA-----------------------EF--NRGKLL 185 (406)
Q Consensus 131 ~~~kVAIIIPyRnR~~hL~~fL~~L~p~L~rQ~l~y~I~VIeQ~d~g-----------------------~F--NRakLL 185 (406)
...+++||||.||.++.|..+|..+...+.. ...++|+||...... +. .+|.++
T Consensus 29 ~~~~vSVVIPayNee~~I~~~l~sl~~~~~~-~~~~EIIVVDDgStD~T~~ia~~~~~~v~~~~~~~~~~~~n~Gkg~A~ 107 (306)
T PRK13915 29 AGRTVSVVLPALNEEETVGKVVDSIRPLLME-PLVDELIVIDSGSTDATAERAAAAGARVVSREEILPELPPRPGKGEAL 107 (306)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHHHHHHhcc-CCCcEEEEEeCCCccHHHHHHHHhcchhhcchhhhhccccCCCHHHHH
Confidence 3458999999999999999999988654432 446799998743210 12 355678
Q ss_pred hHHHHHHhhcCCccEEEEecCCCC-CCCCce--e-----------eeeCCCcceeEEe--cccc-c-----------cc-
Q psy5933 186 NIGYIEALKIKPFHCFIFHDVDLM-PTNPNN--I-----------YACTKQPRHMSVA--IDTF-N-----------YE- 236 (406)
Q Consensus 186 NvG~~eA~k~~~~Dc~IFhDVDLI-p~~d~n--l-----------Y~c~~~PrHlS~~--~dkf-~-----------yr- 236 (406)
|.|+..| +.|+++|.|.|.. +.++.. + +.++...+.+... .... + ++
T Consensus 108 ~~g~~~a----~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~~~V~g~~~r~~~~~~~~~~~~~gr~~~~~~~~l~~~ 183 (306)
T PRK13915 108 WRSLAAT----TGDIVVFVDADLINFDPMFVPGLLGPLLTDPGVHLVKAFYRRPLRVSGGVDATGGGRVTELVARPLLNL 183 (306)
T ss_pred HHHHHhc----CCCEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEEEeccccccccccCcCCCCchHHHHHHHHHHH
Confidence 8888866 6799999999997 555431 0 0111011111000 0000 0 00
Q ss_pred -----CCccccccceeeecHhhhhhcCCCCCCCccCCCCchhHHHHH--HCCC-eEEec
Q psy5933 237 -----LPYCTIFGGAIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQRL--SNYY-SICRF 287 (406)
Q Consensus 237 -----lpy~~~fGGv~a~~kedF~kVNGFdN~fwGWGGEDdDL~~RL--~~Gl-ki~R~ 287 (406)
.......+|..++.++-+.++. |+ .||| .+.++...+ ..|+ .+...
T Consensus 184 ~~~~l~~i~dp~sG~~a~rr~~l~~l~-~~---~~yg-~e~~~l~~~~~~~g~~~i~~V 237 (306)
T PRK13915 184 LRPELAGFVQPLGGEYAGRRELLESLP-FV---PGYG-VEIGLLIDTLDRLGLDAIAQV 237 (306)
T ss_pred HHHhhhcccCcchHhHHHHHHHHHhCC-CC---CCCe-ehHHHHHHHHHHhCcCceEEE
Confidence 0112334788899999988874 76 3677 467777777 4587 45443
No 58
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.54 E-value=0.00035 Score=56.92 Aligned_cols=75 Identities=23% Similarity=0.280 Sum_probs=55.9
Q ss_pred CceEEEEEeecCchHHHHHHHHHHHHHHhhccc-ceeEEEEEEcc-----------------------ccccchhhhhhH
Q psy5933 132 QHQVAIIVPYMNREGQLKTFLLHIHQFLQKQFI-SYQIFVIEQRH-----------------------PAEFNRGKLLNI 187 (406)
Q Consensus 132 ~~kVAIIIPyRnR~~hL~~fL~~L~p~L~rQ~l-~y~I~VIeQ~d-----------------------~g~FNRakLLNv 187 (406)
..+++||||.+|+++.|...+..+. +|.. .++|+||.... ....+.+.++|.
T Consensus 2 ~~~~siiip~~n~~~~l~~~l~s~~----~q~~~~~eiivvddgs~d~t~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 77 (291)
T COG0463 2 MPKVSVVIPTYNEEEYLPEALESLL----NQTYKDFEIIVVDDGSTDGTTEIAIEYGAKDVRVIRLINERNGGLGAARNA 77 (291)
T ss_pred CccEEEEEeccchhhhHHHHHHHHH----hhhhcceEEEEEeCCCCCChHHHHHHHhhhcceEEEeecccCCChHHHHHh
Confidence 4689999999999999999988774 3332 36888875322 113566777888
Q ss_pred HHHHHhhcCCccEEEEecCCCCCCCCce
Q psy5933 188 GYIEALKIKPFHCFIFHDVDLMPTNPNN 215 (406)
Q Consensus 188 G~~eA~k~~~~Dc~IFhDVDLIp~~d~n 215 (406)
|+..| ..|++.|.|.|.+ .++..
T Consensus 78 ~~~~~----~~~~~~~~d~d~~-~~~~~ 100 (291)
T COG0463 78 GLEYA----RGDYIVFLDADDQ-HPPEL 100 (291)
T ss_pred hHHhc----cCCEEEEEccCCC-CCHHH
Confidence 88877 3499999999999 77753
No 59
>KOG3736|consensus
Probab=97.53 E-value=6.6e-05 Score=80.98 Aligned_cols=48 Identities=21% Similarity=0.274 Sum_probs=43.3
Q ss_pred ccccceeeecHhhhhhcCCCCCCCccCCCCchhHHHHH-HCCCeEEecc
Q psy5933 241 TIFGGAIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQRL-SNYYSICRFS 288 (406)
Q Consensus 241 ~~fGGv~a~~kedF~kVNGFdN~fwGWGGEDdDL~~RL-~~Glki~R~~ 288 (406)
..-||++|+.|+=|..+++||+....||||-.||..|+ .-|-++.-.|
T Consensus 314 tMaGglFAI~r~yF~eiG~yD~gMdiwGGENlElSfrvWqCGG~lei~P 362 (578)
T KOG3736|consen 314 TMAGGLFAIDRKYFGELGSYDEGMDIWGGENLELSFRVWQCGGRLEIVP 362 (578)
T ss_pred ccCCceEEeeHHHHhhccCccccccccChhhceeeEEEeccCCeEEecC
Confidence 45699999999999999999999999999999999999 9987766543
No 60
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=97.47 E-value=0.0018 Score=65.03 Aligned_cols=153 Identities=15% Similarity=0.237 Sum_probs=99.1
Q ss_pred cCCceEEEEEeecCchHHHHHHHHHHHHHHhh---c--ccceeEEEEEEccc---------------------------c
Q psy5933 130 IPQHQVAIIVPYMNREGQLKTFLLHIHQFLQK---Q--FISYQIFVIEQRHP---------------------------A 177 (406)
Q Consensus 130 ~~~~kVAIIIPyRnR~~hL~~fL~~L~p~L~r---Q--~l~y~I~VIeQ~d~---------------------------g 177 (406)
.+..+++||||.||.++.|..+|..+...+.. | ...++|+||..... .
T Consensus 67 ~~~~~isVVIP~yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~~ 146 (333)
T PTZ00260 67 DSDVDLSIVIPAYNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQNINPNIDIRLLSLLR 146 (333)
T ss_pred CCCeEEEEEEeeCCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHHHHHhcCCCCCcEEEEEcCC
Confidence 56779999999999999999999988777652 2 23688999863210 1
Q ss_pred ccchhhhhhHHHHHHhhcCCccEEEEecCCCCCCCCce--ee-------------eeCCCcceeE----Eecccc-----
Q psy5933 178 EFNRGKLLNIGYIEALKIKPFHCFIFHDVDLMPTNPNN--IY-------------ACTKQPRHMS----VAIDTF----- 233 (406)
Q Consensus 178 ~FNRakLLNvG~~eA~k~~~~Dc~IFhDVDLIp~~d~n--lY-------------~c~~~PrHlS----~~~dkf----- 233 (406)
...+|.++|.|+..| .+|++++.|.|.....+.. +. .+++. .+.. .....+
T Consensus 147 N~G~~~A~~~Gi~~a----~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~GsR-~~~~~~~~~~~~~~~r~~~ 221 (333)
T PTZ00260 147 NKGKGGAVRIGMLAS----RGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGSR-NHLVDSDVVAKRKWYRNIL 221 (333)
T ss_pred CCChHHHHHHHHHHc----cCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEeec-cccccCcccccCcHHHHHH
Confidence 234677889998877 5799999999987655431 11 11110 1110 000000
Q ss_pred --ccc--------CCccccccceeeecHhhhhhcCCCC-CCCccCCCCchhHHHHH-HCCCeEEecccc
Q psy5933 234 --NYE--------LPYCTIFGGAIAMLQHQFRQVNGFS-NLYFGWGAEDDDLFQRL-SNYYSICRFSKQ 290 (406)
Q Consensus 234 --~yr--------lpy~~~fGGv~a~~kedF~kVNGFd-N~fwGWGGEDdDL~~RL-~~Glki~R~~~~ 290 (406)
.+. ......-.|--+++++-...+ |+ ....||+ -|.|+..+. ..|++|...+..
T Consensus 222 ~~~~~~l~~~~~~~~i~D~~~Gfk~~~r~~~~~i--~~~~~~~~~~-fd~Ell~~a~~~g~~I~EvPv~ 287 (333)
T PTZ00260 222 MYGFHFIVNTICGTNLKDTQCGFKLFTRETARII--FPSLHLERWA-FDIEIVMIAQKLNLPIAEVPVN 287 (333)
T ss_pred HHHHHHHHHHHcCCCcccCCCCeEEEeHHHHHHH--hhhccccCcc-chHHHHHHHHHcCCCEEEEcee
Confidence 000 112223446778888888877 33 3445776 689999999 999999887743
No 61
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=97.43 E-value=0.0011 Score=73.68 Aligned_cols=185 Identities=17% Similarity=0.109 Sum_probs=109.0
Q ss_pred CceEEEEEeecCchHHHHHHHHHHHHHHhhcc-cceeEEEEEEcc-------------------------ccccchhhhh
Q psy5933 132 QHQVAIIVPYMNREGQLKTFLLHIHQFLQKQF-ISYQIFVIEQRH-------------------------PAEFNRGKLL 185 (406)
Q Consensus 132 ~~kVAIIIPyRnR~~hL~~fL~~L~p~L~rQ~-l~y~I~VIeQ~d-------------------------~g~FNRakLL 185 (406)
.++|+|+||-+|=+......+.++. .+|. -+|+|+++-..+ .++=.||.++
T Consensus 62 ~~~vsIlVPa~nE~~vi~~~i~~ll---~~ldYP~~eI~vi~~~nD~~T~~~~~~l~~~~p~~~~v~~~~~g~~gKa~aL 138 (727)
T PRK11234 62 EKPLAIMVPAWNETGVIGNMAELAA---TTLDYENYHIFVGTYPNDPATQADVDAVCARFPNVHKVVCARPGPTSKADCL 138 (727)
T ss_pred CCCEEEEEecCcchhhHHHHHHHHH---HhCCCCCeEEEEEecCCChhHHHHHHHHHHHCCCcEEEEeCCCCCCCHHHHH
Confidence 3578999999998888888888763 2222 236666662111 1123589999
Q ss_pred hHHHHHHhh-----cCCccEEEEecCCCCCCCCcee---ee--------eCCCcce--eEEec-----cccc--------
Q psy5933 186 NIGYIEALK-----IKPFHCFIFHDVDLMPTNPNNI---YA--------CTKQPRH--MSVAI-----DTFN-------- 234 (406)
Q Consensus 186 NvG~~eA~k-----~~~~Dc~IFhDVDLIp~~d~nl---Y~--------c~~~PrH--lS~~~-----dkf~-------- 234 (406)
|.|+..+.. ...+|.+++||.|.++++|..- +. |+..|.. .+... +.|.
T Consensus 139 N~~l~~~~~~e~~~~~~~~vvvi~DAD~~v~pd~L~~~~~l~~~~~~VQ~p~~p~~~~~~~~~~~~~~~EFa~~~~~~~~ 218 (727)
T PRK11234 139 NNVLDAITQFERSANFAFAGFILHDAEDVISPMELRLFNYLVERKDLIQIPVYPFEREWTHFTSGTYIDEFAELHGKDVP 218 (727)
T ss_pred HHHHHHHHhhhcccCCcccEEEEEcCCCCCChhHHHHHHhhcCCCCeEeecccCCCccHHHHHHHHHHHHHHHHhhhhhH
Confidence 999998743 2357899999999999999642 11 2111111 00000 1111
Q ss_pred ----ccCCccccccceeee-cH--hhhhhcC---CCCCCCccCCCCchhHHHHH-HCCCeEEecccceee-E-----Eec
Q psy5933 235 ----YELPYCTIFGGAIAM-LQ--HQFRQVN---GFSNLYFGWGAEDDDLFQRL-SNYYSICRFSKQVSE-Y-----VML 297 (406)
Q Consensus 235 ----yrlpy~~~fGGv~a~-~k--edF~kVN---GFdN~fwGWGGEDdDL~~RL-~~Glki~R~~~~~gr-Y-----~ml 297 (406)
+..+ ....|-.+++ ++ +...+++ ||+...-. ||-|+..|+ .+|+++.-.+..+.. . ...
T Consensus 219 ~~~~lgg~-~~l~G~~~af~Rr~l~al~~~ggg~~~~~~~lT---ED~dlg~rL~~~G~~v~f~~~~v~~~~~~~~~~~~ 294 (727)
T PRK11234 219 VREALAGQ-VPSAGVGTCFSRRAVTALLEDGDGIAFDVQSLT---EDYDIGFRLKEKGMREIFVRFPVVDEAKEREQRKF 294 (727)
T ss_pred HHHHcCCC-cccCCceEEEecccHHHHHHhcCCCCcCCCcch---HHHHHHHHHHHCCCEEEEccccccccccccccccc
Confidence 0011 1234446888 55 3588887 57766554 999999999 999997654422110 0 000
Q ss_pred cC-C--C-----cchhHHHHHHHHcCCceeccCc
Q psy5933 298 NH-A--K-----ETEKLERLEKLENGPFRFKTDG 323 (406)
Q Consensus 298 ~H-k--~-----~~~N~~R~~ll~~~~~r~~~DG 323 (406)
.. . . -+.-|..++-+.+.+.||..-|
T Consensus 295 ~~~~~~~~~~~~~~~~P~t~~~~~rQR~RW~~G~ 328 (727)
T PRK11234 295 LQHARTSNMICVREYFPDTFSAAVRQKSRWIIGI 328 (727)
T ss_pred ccccccccceEEEEeCchhHHHHHHHHHHHHccc
Confidence 00 0 0 1234677777777778887665
No 62
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=97.25 E-value=0.00093 Score=60.47 Aligned_cols=75 Identities=20% Similarity=0.262 Sum_probs=55.5
Q ss_pred EEEeecCchHHHHHHHHHHHHHHhhcccceeEEEEEEcc-------------------------ccccchhhhhhHHHHH
Q psy5933 137 IIVPYMNREGQLKTFLLHIHQFLQKQFISYQIFVIEQRH-------------------------PAEFNRGKLLNIGYIE 191 (406)
Q Consensus 137 IIIPyRnR~~hL~~fL~~L~p~L~rQ~l~y~I~VIeQ~d-------------------------~g~FNRakLLNvG~~e 191 (406)
||||.||.++.|..+|..+.. |.-.++|+||.... +..-.||.++|.|+..
T Consensus 1 ViIp~~Ne~~~l~~~l~sl~~----~~~~~eIivvdd~S~D~t~~~~~~~~~~~~v~~i~~~~~~~~~Gk~~aln~g~~~ 76 (191)
T cd06436 1 VLVPCLNEEAVIQRTLASLLR----NKPNFLVLVIDDASDDDTAGIVRLAITDSRVHLLRRHLPNARTGKGDALNAAYDQ 76 (191)
T ss_pred CEEeccccHHHHHHHHHHHHh----CCCCeEEEEEECCCCcCHHHHHhheecCCcEEEEeccCCcCCCCHHHHHHHHHHH
Confidence 799999999999999998852 33457777774211 1123578899999998
Q ss_pred Hhhc-------CCccEEEEecCCCCCCCCce
Q psy5933 192 ALKI-------KPFHCFIFHDVDLMPTNPNN 215 (406)
Q Consensus 192 A~k~-------~~~Dc~IFhDVDLIp~~d~n 215 (406)
|.++ ...|+++|.|.|.++.++..
T Consensus 77 ~~~~~~~~g~~~~~d~v~~~DaD~~~~~~~l 107 (191)
T cd06436 77 IRQILIEEGADPERVIIAVIDADGRLDPNAL 107 (191)
T ss_pred HhhhccccccCCCccEEEEECCCCCcCHhHH
Confidence 8542 13479999999999988853
No 63
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=97.23 E-value=0.0013 Score=66.92 Aligned_cols=150 Identities=17% Similarity=0.148 Sum_probs=92.5
Q ss_pred EEEEEeecCchHHHHHHHHHHHHHHhhcccc--------------------e--eEEEEEEccccccchh----------
Q psy5933 135 VAIIVPYMNREGQLKTFLLHIHQFLQKQFIS--------------------Y--QIFVIEQRHPAEFNRG---------- 182 (406)
Q Consensus 135 VAIIIPyRnR~~hL~~fL~~L~p~L~rQ~l~--------------------y--~I~VIeQ~d~g~FNRa---------- 182 (406)
++|||+.+||.++|+..|..|...-. ..-+ | .|.+++|.+.+.-|.+
T Consensus 2 ~PVlv~ayNRp~~l~r~LesLl~~~p-~~~~~~liIs~DG~~~~~~~~v~~~~~~i~~i~~~~~~~~~~~~~~~~~~y~~ 80 (334)
T cd02514 2 IPVLVIACNRPDYLRRMLDSLLSYRP-SAEKFPIIVSQDGGYEEVADVAKSFGDGVTHIQHPPISIKNVNPPHKFQGYYR 80 (334)
T ss_pred cCEEEEecCCHHHHHHHHHHHHhccc-cCCCceEEEEeCCCchHHHHHHHhhccccEEEEcccccccccCcccccchhhH
Confidence 58999999999999999999853200 1112 3 4455566554433322
Q ss_pred ------hhhhHHHHHHhhcCCccEEEEecCCCCCCCCceeee------eCCCcce--eEEeccccccc-----CC---cc
Q psy5933 183 ------KLLNIGYIEALKIKPFHCFIFHDVDLMPTNPNNIYA------CTKQPRH--MSVAIDTFNYE-----LP---YC 240 (406)
Q Consensus 183 ------kLLNvG~~eA~k~~~~Dc~IFhDVDLIp~~d~nlY~------c~~~PrH--lS~~~dkf~yr-----lp---y~ 240 (406)
.++|.+|..+ .++.+|+.|.||++.+||.-|- ....|+- .|...+ .++. .| |.
T Consensus 81 ia~hyk~aln~vF~~~----~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~~ISa~Nd-nG~~~~~~~~~~~lyr 155 (334)
T cd02514 81 IARHYKWALTQTFNLF----GYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLWCISAWND-NGKEHFVDDTPSLLYR 155 (334)
T ss_pred HHHHHHHHHHHHHHhc----CCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEEEEEeecc-CCcccccCCCcceEEE
Confidence 2666666643 6899999999999999975331 1112332 332211 1111 02 22
Q ss_pred -cccc-ceeeecHhhhhhcCCCCCCCccCCCCchhHHHHH---HCCCeEEecccceeeEEecc
Q psy5933 241 -TIFG-GAIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQRL---SNYYSICRFSKQVSEYVMLN 298 (406)
Q Consensus 241 -~~fG-Gv~a~~kedF~kVNGFdN~fwGWGGEDdDL~~RL---~~Glki~R~~~~~grY~ml~ 298 (406)
.+|. --.++||+.+.+. +. .|-.-|-|+..|+ .+|=...|| ++.|-.++.
T Consensus 156 s~ff~glGWml~r~~W~e~---~~---~wp~~~WD~w~R~~~~rkgr~cirP--eisRt~~~g 210 (334)
T cd02514 156 TDFFPGLGWMLTRKLWKEL---EP---KWPKAFWDDWMRLPEQRKGRECIRP--EISRTYHFG 210 (334)
T ss_pred ecCCCchHHHHHHHHHHHh---CC---CCCCCChHHhhcchhhhcCCccccC--Ccchheecc
Confidence 2333 3457899999887 32 6777799999998 677777776 445544443
No 64
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=97.22 E-value=0.0015 Score=72.07 Aligned_cols=164 Identities=17% Similarity=0.203 Sum_probs=94.5
Q ss_pred CCCcCCceEEEEEeecCchH-----HHHHHHHHHHHHHhhcc--cceeEEEEEEcccc----------------------
Q psy5933 127 TDCIPQHQVAIIVPYMNREG-----QLKTFLLHIHQFLQKQF--ISYQIFVIEQRHPA---------------------- 177 (406)
Q Consensus 127 ~~C~~~~kVAIIIPyRnR~~-----hL~~fL~~L~p~L~rQ~--l~y~I~VIeQ~d~g---------------------- 177 (406)
+...+..+|+|+||.||-+. .|+..+..+ .+|+ -+|+|+|+....+.
T Consensus 118 ~~~~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl----~~~~~~~~~e~~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~ 193 (691)
T PRK05454 118 PPPPPEARTAILMPIYNEDPARVFAGLRAMYESL----AATGHGAHFDFFILSDTRDPDIAAAEEAAWLELRAELGGEGR 193 (691)
T ss_pred CCCCCCCceEEEEeCCCCChHHHHHHHHHHHHHH----HhcCCCCCEEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCc
Confidence 34456789999999999552 244444333 2332 25788877533211
Q ss_pred ccch-------hhhhhHHHHHHhhcCCccEEEEecCCCCCCCCceeeeeC---CCcceeE-------Eeccc-------c
Q psy5933 178 EFNR-------GKLLNIGYIEALKIKPFHCFIFHDVDLMPTNPNNIYACT---KQPRHMS-------VAIDT-------F 233 (406)
Q Consensus 178 ~FNR-------akLLNvG~~eA~k~~~~Dc~IFhDVDLIp~~d~nlY~c~---~~PrHlS-------~~~dk-------f 233 (406)
-|-| .|+-|++-....-..++|+++..|.|.++..|....... ..|+.-. ...+. |
T Consensus 194 i~yr~R~~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~vGlVQt~~~~~n~~slfaR~qqf 273 (691)
T PRK05454 194 IFYRRRRRNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEANPRAGLIQTLPVAVGADTLFARLQQF 273 (691)
T ss_pred EEEEECCcCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcCEEEEeCCccCcCCCCHHHHHHHH
Confidence 0111 144455522222114689999999999999986311110 0111000 00000 0
Q ss_pred c---cc------C-----CccccccceeeecHhhhhhcCCCCC--CCccCCCC----chhHHHHH-HCCCeEEeccccee
Q psy5933 234 N---YE------L-----PYCTIFGGAIAMLQHQFRQVNGFSN--LYFGWGAE----DDDLFQRL-SNYYSICRFSKQVS 292 (406)
Q Consensus 234 ~---yr------l-----py~~~fGGv~a~~kedF~kVNGFdN--~fwGWGGE----DdDL~~RL-~~Glki~R~~~~~g 292 (406)
. |. + -...++|-|..+.++.|.+++|.+. ..-|||++ |.++..++ .+|.++.-.+...+
T Consensus 274 ~~~~y~~~~~~G~~~w~~~~g~f~G~naIiR~~af~~~~glp~L~g~~p~~~~~LseD~~~a~~l~~~GyrV~~~pd~~~ 353 (691)
T PRK05454 274 ATRVYGPLFAAGLAWWQGGEGNYWGHNAIIRVKAFAEHCGLPPLPGRGPFGGHILSHDFVEAALMRRAGWGVWLAPDLPG 353 (691)
T ss_pred HHHHHHHHHHhhhhhhccCccccccceEEEEHHHHHHhcCCccccccCCCCCCcccHHHHHHHHHHHCCCEEEEcCcccc
Confidence 0 00 0 1123567778899999999999876 57788865 99999999 99998776543334
Q ss_pred eE
Q psy5933 293 EY 294 (406)
Q Consensus 293 rY 294 (406)
.|
T Consensus 354 ~~ 355 (691)
T PRK05454 354 SY 355 (691)
T ss_pred cc
Confidence 44
No 65
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=96.96 E-value=0.0087 Score=66.42 Aligned_cols=149 Identities=19% Similarity=0.192 Sum_probs=90.1
Q ss_pred CceEEEEEeecCchHHHHHHHHHHHHHHhhcccceeEEE-------------------------EEEccccccchhhhhh
Q psy5933 132 QHQVAIIVPYMNREGQLKTFLLHIHQFLQKQFISYQIFV-------------------------IEQRHPAEFNRGKLLN 186 (406)
Q Consensus 132 ~~kVAIIIPyRnR~~hL~~fL~~L~p~L~rQ~l~y~I~V-------------------------IeQ~d~g~FNRakLLN 186 (406)
.+.+||+||-+|=++.+..++.++..-| ..-.|+|+| |...+++|=.||++||
T Consensus 70 ~~~vsIlVPa~nE~~VI~~~v~~ll~~l--dYp~~~I~v~~~~nD~~T~~~~~~~~~~~p~~~~v~~~~~gp~gKa~ALN 147 (703)
T PRK15489 70 EQPLAIMVPAWKEYDVIAKMIENMLATL--DYRRYVIFVGTYPNDAETITEVERMRRRYKRLVRVEVPHDGPTCKADCLN 147 (703)
T ss_pred CCceEEEEeCCCcHHHHHHHHHHHHhcC--CCCCeEEEEEecCCCccHHHHHHHHhccCCcEEEEEcCCCCCCCHHHHHH
Confidence 3489999999999999999888763111 111344544 2334455677999999
Q ss_pred HHHHHHhh-----cCCccEEEEecCCCCCCCCcee----eeeCCCcceeEE--ecc------------cc----cccCCc
Q psy5933 187 IGYIEALK-----IKPFHCFIFHDVDLMPTNPNNI----YACTKQPRHMSV--AID------------TF----NYELPY 239 (406)
Q Consensus 187 vG~~eA~k-----~~~~Dc~IFhDVDLIp~~d~nl----Y~c~~~PrHlS~--~~d------------kf----~yrlpy 239 (406)
.|+..+.+ ...++-+++||.|-+|+++..- +.+........+ ..+ .| +..+|.
T Consensus 148 ~~l~~~~~~e~~~~~~fa~vvi~DAEd~~~P~~L~~~~~~~~~~~~iQ~pV~~~~~~~~~~l~~~~~~Efa~~~~~~l~~ 227 (703)
T PRK15489 148 WIIQAIFRYEAGHGIEFAGVILHDSEDVLHPLELKYFNYLLPRKDLVQLPVLSLERKWYEWVAGTYMDEFAEWHQKDLVV 227 (703)
T ss_pred HHHHHHHhhhhhccCccceEEEEcCCCCCChhHHHHHHhhcCCcceeeeeeccCCCccccHHHHHHHHHHHHHhhhHHHH
Confidence 99987632 1246679999999999999631 111111111000 000 00 100111
Q ss_pred ------cccccc-eeeecHhhhhhc---CCCCCCCccCC----CCchhHHHHH-HCCCeEEe
Q psy5933 240 ------CTIFGG-AIAMLQHQFRQV---NGFSNLYFGWG----AEDDDLFQRL-SNYYSICR 286 (406)
Q Consensus 240 ------~~~fGG-v~a~~kedF~kV---NGFdN~fwGWG----GEDdDL~~RL-~~Glki~R 286 (406)
.-..|| .++|+++-...+ +|-+ +|. =||-|+..|| ..|++..-
T Consensus 228 r~~l~~~ipl~Gv~~~frr~aL~~l~~~gg~~----~~n~~sLTED~Dlg~RL~~~G~r~~f 285 (703)
T PRK15489 228 RESLTGTVPSAGVGTCFSRRALLALMKERGNQ----PFNTSSLTEDYDFSFRLAELGMQEIF 285 (703)
T ss_pred HHHcCCceeccCcceeeeHHHHHHHHHhcCCC----CCCCCCchHhHHHHHHHHHCCCceEE
Confidence 123566 566677776555 5422 455 3999999999 99998654
No 66
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=96.92 E-value=0.0022 Score=59.79 Aligned_cols=71 Identities=15% Similarity=0.061 Sum_probs=53.6
Q ss_pred eEEEEEeecCchHHHHHHHHHHHHHHhhcccceeEEEEEEccc-----------------cccchhhhhhHHHHHHhhcC
Q psy5933 134 QVAIIVPYMNREGQLKTFLLHIHQFLQKQFISYQIFVIEQRHP-----------------AEFNRGKLLNIGYIEALKIK 196 (406)
Q Consensus 134 kVAIIIPyRnR~~hL~~fL~~L~p~L~rQ~l~y~I~VIeQ~d~-----------------g~FNRakLLNvG~~eA~k~~ 196 (406)
+++||||.||.++.|..+|.++..+ ..+|+||..... ...+.|..+|.|+..|
T Consensus 1 ~isvii~~~Ne~~~l~~~l~sl~~~------~~eiivvD~gStD~t~~i~~~~~~~v~~~~~~g~~~~~n~~~~~a---- 70 (229)
T cd02511 1 TLSVVIITKNEERNIERCLESVKWA------VDEIIVVDSGSTDRTVEIAKEYGAKVYQRWWDGFGAQRNFALELA---- 70 (229)
T ss_pred CEEEEEEeCCcHHHHHHHHHHHhcc------cCEEEEEeCCCCccHHHHHHHcCCEEEECCCCChHHHHHHHHHhC----
Confidence 5899999999999999999988532 125666543210 1245678889999887
Q ss_pred CccEEEEecCCCCCCCCc
Q psy5933 197 PFHCFIFHDVDLMPTNPN 214 (406)
Q Consensus 197 ~~Dc~IFhDVDLIp~~d~ 214 (406)
..|+++|.|.|.++.++.
T Consensus 71 ~~d~vl~lDaD~~~~~~~ 88 (229)
T cd02511 71 TNDWVLSLDADERLTPEL 88 (229)
T ss_pred CCCEEEEEeCCcCcCHHH
Confidence 568999999999988775
No 67
>KOG3737|consensus
Probab=96.12 E-value=0.0091 Score=62.38 Aligned_cols=159 Identities=19% Similarity=0.301 Sum_probs=98.8
Q ss_pred eecCCCCcC------CceEEEEEeecCchHHHHHHHHHHHHHHhhcccce--eEEEEEEcccc------------ccc--
Q psy5933 123 AWEPTDCIP------QHQVAIIVPYMNREGQLKTFLLHIHQFLQKQFISY--QIFVIEQRHPA------------EFN-- 180 (406)
Q Consensus 123 ~~~P~~C~~------~~kVAIIIPyRnR~~hL~~fL~~L~p~L~rQ~l~y--~I~VIeQ~d~g------------~FN-- 180 (406)
.-+|++|+- ..+++|||-|.|- -...+|...|..+.|.-.+| +|+.|....+. .||
T Consensus 139 D~R~EECkhWdYpe~Lpt~SVviVFHNE--Gws~LmRTVHSVi~RsP~~~l~eivlvDDfSdKehLkekLDeYv~~fnGl 216 (603)
T KOG3737|consen 139 DLRQEECKHWDYPENLPTSSVVIVFHNE--GWSTLMRTVHSVIKRSPRKYLAEIVLVDDFSDKEHLKEKLDEYVKLFNGL 216 (603)
T ss_pred ccCHhhccccCCcccCCcceEEEEEecC--ccHHHHHHHHHHHhcCcHHhhheEEEeccCCccHHHHHHHHHHHHHhcCE
Confidence 346888884 3578999999873 23345556677777765443 45555433221 121
Q ss_pred --------hh---hhhhHHHHHHhhcCCccEEEEecCCCCCC------------CCce-------------eeeeC----
Q psy5933 181 --------RG---KLLNIGYIEALKIKPFHCFIFHDVDLMPT------------NPNN-------------IYACT---- 220 (406)
Q Consensus 181 --------Ra---kLLNvG~~eA~k~~~~Dc~IFhDVDLIp~------------~d~n-------------lY~c~---- 220 (406)
|- .++-+|+++| ..+++||.|.-+=.. .|+- .|...
T Consensus 217 VkV~Rne~REGLI~aRSiGA~~a----tGeV~ifLDAHCEVntNWlpPLlAPI~rdRtvmTVP~IDgId~n~~EyrpvyG 292 (603)
T KOG3737|consen 217 VKVFRNERREGLIQARSIGAQKA----TGEVLIFLDAHCEVNTNWLPPLLAPISRDRTVMTVPLIDGIDGNTYEYRPVYG 292 (603)
T ss_pred EEEEecchhhhhhhhhccchhhc----cccEEEEEecceeeecccccccccccccCceEEEEeeeeeecCCceEEeeccC
Confidence 11 2345777777 568999999876211 1111 11111
Q ss_pred CCcceeEEeccccc--c----------------cCCcc--ccccceeeecHhhhhhcCCCCCCCccCCCCchhHHHHH-H
Q psy5933 221 KQPRHMSVAIDTFN--Y----------------ELPYC--TIFGGAIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQRL-S 279 (406)
Q Consensus 221 ~~PrHlS~~~dkf~--y----------------rlpy~--~~fGGv~a~~kedF~kVNGFdN~fwGWGGEDdDL~~RL-~ 279 (406)
....|.+...+ |+ | .-||+ +.-||.+|+.++-|...+-||....=||||..|+..++ .
T Consensus 293 ~dn~h~rGife-WgmLyKe~~~t~rE~r~RkhnsePyRSPthAGGLfAInRe~F~ELG~YDpgLqiWGGEnfElSfKIWQ 371 (603)
T KOG3737|consen 293 GDNDHARGIFE-WGMLYKEVPLTPREKRLRKHNSEPYRSPTHAGGLFAINREFFFELGLYDPGLQIWGGENFELSFKIWQ 371 (603)
T ss_pred Ccchhhcchhh-hhheeccCCCCHHHHHhhhccCCCCCCcccccceeeehHHHHHHhccCCCcceeecCcceeEEEEEEe
Confidence 01123322111 11 1 12443 46799999999999999999999999999999999999 8
Q ss_pred CCCeEEecc
Q psy5933 280 NYYSICRFS 288 (406)
Q Consensus 280 ~Glki~R~~ 288 (406)
.|-+|.-.+
T Consensus 372 CGG~i~fVP 380 (603)
T KOG3737|consen 372 CGGKILFVP 380 (603)
T ss_pred eCCEEEEEE
Confidence 888876644
No 68
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=95.98 E-value=0.038 Score=52.60 Aligned_cols=140 Identities=16% Similarity=0.113 Sum_probs=69.9
Q ss_pred EEEEEeecCchHHHHHHHHHHHHHHhhcccceeE-EEEEEccccccchhhhhhHHHHHHhhcCCccEEEEecCCCCCCCC
Q psy5933 135 VAIIVPYMNREGQLKTFLLHIHQFLQKQFISYQI-FVIEQRHPAEFNRGKLLNIGYIEALKIKPFHCFIFHDVDLMPTNP 213 (406)
Q Consensus 135 VAIIIPyRnR~~hL~~fL~~L~p~L~rQ~l~y~I-~VIeQ~d~g~FNRakLLNvG~~eA~k~~~~Dc~IFhDVDLIp~~d 213 (406)
+|||+...+.. .+..++.++. +.+..++++ -++.-.+ .++-+.+.|.|++.| +++++||..-|..+.+.
T Consensus 1 isiI~c~n~~~-~~~~~~~~i~---~~~~~~~~~i~i~~~~~--~~s~~~~yN~a~~~a----~~~ylvflHqDv~i~~~ 70 (217)
T PF13712_consen 1 ISIIICVNDEE-LYEECLRSIK---RLIGPPGELIEIDNVRN--AKSMAAAYNEAMEKA----KAKYLVFLHQDVFIINE 70 (217)
T ss_dssp EEEEEEES-HH-HHHHHHHHHH---HTT--TEEEEEEE-SSS---S-TTTHHHHHGGG------SSEEEEEETTEE-SSH
T ss_pred CEEEEEECCHH-HHHHHHHHHH---hhCCCCceEEEEeccCC--CcCHHHHHHHHHHhC----CCCEEEEEeCCeEEcch
Confidence 57787776654 4666888774 223344544 4444333 388888999988876 67899999889877654
Q ss_pred cee------------------eeeCCCcc----eeEE------------ec--c-----cccccCC-------ccccccc
Q psy5933 214 NNI------------------YACTKQPR----HMSV------------AI--D-----TFNYELP-------YCTIFGG 245 (406)
Q Consensus 214 ~nl------------------Y~c~~~Pr----HlS~------------~~--d-----kf~yrlp-------y~~~fGG 245 (406)
.-+ ..+...|. .-+. .. . ...|.-| ....=|.
T Consensus 71 ~~l~~il~~~~~~~~~G~iGvaG~~~~~~~~~~w~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~avDg~ 150 (217)
T PF13712_consen 71 NWLEDILEIFEEDPNIGMIGVAGSKRLPPNGVWWESPNKVGKVREYGRIMHGHGPNSAGEVRYGGPRNDPPEEVQAVDGL 150 (217)
T ss_dssp HHHHHHHHHHHH-TTEEEEESEEEESS-S-TTS---EEEEEETTEEEE----E-------------ES-SSEEEEEE-TT
T ss_pred hHHHHHHHHHhhCCCccEEEeecCCcCCCCCcccccccccccccccccccccccccccccccccccccCCceeEEEecce
Confidence 210 11111111 0010 00 0 0001111 1122355
Q ss_pred eeeecHhhhhhcCCCCCC-CccCCCCchhHHHHH-HCCCeEEecc
Q psy5933 246 AIAMLQHQFRQVNGFSNL-YFGWGAEDDDLFQRL-SNYYSICRFS 288 (406)
Q Consensus 246 v~a~~kedF~kVNGFdN~-fwGWGGEDdDL~~RL-~~Glki~R~~ 288 (406)
.+++.++-+ ||++. |.||-.-|.|+..++ .+|.++.-++
T Consensus 151 ll~~~~dv~----~fde~~~~gfH~Ydvd~cl~~~~~G~~v~~~~ 191 (217)
T PF13712_consen 151 LLATQKDVP----RFDEDLFTGFHFYDVDQCLEARRAGYRVVVPP 191 (217)
T ss_dssp EEEEETTB---------SS--SSSSHHHHHHHHHHHTT-EEEE--
T ss_pred EEEEEcccC----CCCccccCCcchHHHHHHHHHHHhCCEEEecC
Confidence 566666655 99999 999999999999999 9999986544
No 69
>KOG3738|consensus
Probab=95.96 E-value=0.011 Score=61.95 Aligned_cols=45 Identities=22% Similarity=0.273 Sum_probs=41.1
Q ss_pred ccccceeeecHhhhhhcCCCCCCCccCCCCchhHHHHH-HCCCeEE
Q psy5933 241 TIFGGAIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQRL-SNYYSIC 285 (406)
Q Consensus 241 ~~fGGv~a~~kedF~kVNGFdN~fwGWGGEDdDL~~RL-~~Glki~ 285 (406)
.+-||+++|.|+=|.+.+-||....=||||..||..|+ ..|-.+.
T Consensus 292 ~iAGGlfvidk~wF~~LGkyd~~mdiWGGEn~ElsfrvW~CGGslE 337 (559)
T KOG3738|consen 292 AIAGGLFVIDKEWFNELGKYDMDMDIWGGENLELSFRVWQCGGSLE 337 (559)
T ss_pred cccceeEEecHHHHHHhcccCccccccCCcceEEEEEEEeeCCeeE
Confidence 46799999999999999999999999999999999999 8885544
No 70
>KOG2978|consensus
Probab=94.52 E-value=0.052 Score=52.12 Aligned_cols=82 Identities=18% Similarity=0.280 Sum_probs=61.0
Q ss_pred ceEEEEEeecCchHHHHHHHHHHHHHHhhcccceeEEEEEEcc-ccccc--------------------hhhhhhHHHHH
Q psy5933 133 HQVAIIVPYMNREGQLKTFLLHIHQFLQKQFISYQIFVIEQRH-PAEFN--------------------RGKLLNIGYIE 191 (406)
Q Consensus 133 ~kVAIIIPyRnR~~hL~~fL~~L~p~L~rQ~l~y~I~VIeQ~d-~g~FN--------------------RakLLNvG~~e 191 (406)
.+-+||+|.||-.+.|..++.-+..++.....+|+|++|.... +|+-- +...+-.|+..
T Consensus 3 ~kYsvilPtYnEk~Nlpi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k~yg~d~i~l~pR~~klGLgtAy~h 82 (238)
T KOG2978|consen 3 IKYSVILPTYNEKENLPIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQKIYGEDNILLKPRTKKLGLGTAYIH 82 (238)
T ss_pred cceeEEeccccCCCCCeeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHHHhCCCcEEEEeccCcccchHHHHh
Confidence 4679999999999999877777777888889999999997543 22121 22334455666
Q ss_pred HhhcCCccEEEEecCCCCCCCCc
Q psy5933 192 ALKIKPFHCFIFHDVDLMPTNPN 214 (406)
Q Consensus 192 A~k~~~~Dc~IFhDVDLIp~~d~ 214 (406)
+++....|++|..|.|+--++.+
T Consensus 83 gl~~a~g~fiviMDaDlsHhPk~ 105 (238)
T KOG2978|consen 83 GLKHATGDFIVIMDADLSHHPKF 105 (238)
T ss_pred hhhhccCCeEEEEeCccCCCchh
Confidence 66666889999999999766654
No 71
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=93.74 E-value=0.065 Score=49.20 Aligned_cols=92 Identities=16% Similarity=0.232 Sum_probs=59.3
Q ss_pred CCccEEEEecCCCCCCCCce-------------eeeeCC---CcceeEEecc----ccccc-----CCccccccceeeec
Q psy5933 196 KPFHCFIFHDVDLMPTNPNN-------------IYACTK---QPRHMSVAID----TFNYE-----LPYCTIFGGAIAML 250 (406)
Q Consensus 196 ~~~Dc~IFhDVDLIp~~d~n-------------lY~c~~---~PrHlS~~~d----kf~yr-----lpy~~~fGGv~a~~ 250 (406)
..+|+++|.|.|..+.++.. +-+|.. .+..+...+. .+... ......+|+.+++.
T Consensus 30 a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~G~~m~~r 109 (175)
T PF13506_consen 30 AKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPRGVPARGFWSRLEAAFFNFLPGVLQALGGAPFAWGGSMAFR 109 (175)
T ss_pred CCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecccccCCcCHHHHHHHHHHhHHHHHHHHhcCCCceecceeeeE
Confidence 47899999999999988752 111111 0011110000 00000 11244789999999
Q ss_pred HhhhhhcCCCCCCCccCCCCchhHHHHH-HCCCeEEecc
Q psy5933 251 QHQFRQVNGFSNLYFGWGAEDDDLFQRL-SNYYSICRFS 288 (406)
Q Consensus 251 kedF~kVNGFdN~fwGWGGEDdDL~~RL-~~Glki~R~~ 288 (406)
++.+.+++||.. +...=.||-.|..++ ..|+++.-++
T Consensus 110 r~~L~~~GG~~~-l~~~ladD~~l~~~~~~~G~~v~~~~ 147 (175)
T PF13506_consen 110 REALEEIGGFEA-LADYLADDYALGRRLRARGYRVVLSP 147 (175)
T ss_pred HHHHHHcccHHH-HhhhhhHHHHHHHHHHHCCCeEEEcc
Confidence 999999999965 122225999999999 9999988765
No 72
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=93.35 E-value=0.13 Score=46.01 Aligned_cols=47 Identities=32% Similarity=0.443 Sum_probs=39.0
Q ss_pred cccceeeecHhhhhhcCCCCCCCccCCCCchhHHHHH-HCCCeEEecccc
Q psy5933 242 IFGGAIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQRL-SNYYSICRFSKQ 290 (406)
Q Consensus 242 ~fGGv~a~~kedF~kVNGFdN~fwGWGGEDdDL~~RL-~~Glki~R~~~~ 290 (406)
..|.++++.++-+.+|+||+ ...-.| ||.|+..|+ .+|.++...+..
T Consensus 72 ~~G~~~~~r~~~l~~vg~~~-~~~~~~-ED~~l~~~l~~~G~~~~~~~~~ 119 (193)
T PF13632_consen 72 LSGSGMLFRREALREVGGFD-DPFSIG-EDMDLGFRLRRAGYRIVYVPDA 119 (193)
T ss_pred ccCcceeeeHHHHHHhCccc-cccccc-chHHHHHHHHHCCCEEEEeccc
Confidence 56888999999999999999 333344 999999999 999998776543
No 73
>PF03214 RGP: Reversibly glycosylated polypeptide; InterPro: IPR004901 Alpha-1,4-glucan-protein synthase catalyses the reaction: protein + UDP-D-glucose = alpha-D-glucosyl-protein + UDP The enzyme has a possible role in the synthesis of cell wall polysaccharides in plants []. It is found associated with the cell wall, with the highest concentrations in the plasmodesmata. It is also located in the Golgi apparatus.; GO: 0008466 glycogenin glucosyltransferase activity, 0016758 transferase activity, transferring hexosyl groups, 0007047 cellular cell wall organization, 0030244 cellulose biosynthetic process, 0005618 cell wall, 0030054 cell junction
Probab=87.70 E-value=1.1 Score=46.27 Aligned_cols=72 Identities=21% Similarity=0.447 Sum_probs=52.8
Q ss_pred ceEEEEEeecCchHHHHHHHHHHHHHHhhcccceeEEEEEEcc-----------------------------ccccchhh
Q psy5933 133 HQVAIIVPYMNREGQLKTFLLHIHQFLQKQFISYQIFVIEQRH-----------------------------PAEFNRGK 183 (406)
Q Consensus 133 ~kVAIIIPyRnR~~hL~~fL~~L~p~L~rQ~l~y~I~VIeQ~d-----------------------------~g~FNRak 183 (406)
..|-|+||.-. .-|..||...+||+++ |.++||...+ --+|.=..
T Consensus 8 ~~~divi~~~~--~~l~~~~~~wr~~~~~----~hliiv~d~~~~~~~~~p~g~~~~~y~~~di~~~lg~~~~i~~~~~a 81 (348)
T PF03214_consen 8 DEVDIVIPALR--PNLTDFLEEWRPFFSP----YHLIIVQDPDPNEEIKVPEGFDYEVYNRNDIERVLGAKTLIPFKGDA 81 (348)
T ss_pred CcccEEeeccc--ccHHHHHHHHHHhhcc----eeEEEEeCCCccccccCCcccceeeecHhhHHhhcCCcccccccccc
Confidence 45778888642 1356788888888874 5555553221 12688888
Q ss_pred hhhHHHHHHhhcCCccEEEEecCCCCCCCCc
Q psy5933 184 LLNIGYIEALKIKPFHCFIFHDVDLMPTNPN 214 (406)
Q Consensus 184 LLNvG~~eA~k~~~~Dc~IFhDVDLIp~~d~ 214 (406)
.+|.|+..|. .+|+|+.|-|++|.+|.
T Consensus 82 ~R~fGyL~s~----~~yivsiDDD~~P~~D~ 108 (348)
T PF03214_consen 82 CRNFGYLVSK----KDYIVSIDDDCLPAKDD 108 (348)
T ss_pred hhhhHhhhcc----cceEEEEccccccccCC
Confidence 9999999884 59999999999999985
No 74
>PLN03180 reversibly glycosylated polypeptide; Provisional
Probab=86.06 E-value=1.9 Score=44.46 Aligned_cols=73 Identities=18% Similarity=0.290 Sum_probs=50.2
Q ss_pred cCCceEEEEEeecCchHHHHHHHHHHHHHHhhcccceeEEEEE---------------------Ecc--------ccccc
Q psy5933 130 IPQHQVAIIVPYMNREGQLKTFLLHIHQFLQKQFISYQIFVIE---------------------QRH--------PAEFN 180 (406)
Q Consensus 130 ~~~~kVAIIIPyRnR~~hL~~fL~~L~p~L~rQ~l~y~I~VIe---------------------Q~d--------~g~FN 180 (406)
.-...+.|+||.-... .||....|+|++-.+ |+|.+ ..+ --+|+
T Consensus 8 ~~~~evdIVi~TI~~~----~fL~~~r~~l~~~h~---iiV~d~D~~~~~~~~~G~d~~vy~r~d~~~~Lg~~~~~Ip~~ 80 (346)
T PLN03180 8 LLKDELDIVIPTIRNL----DFLEMWRPFFQPYHL---IIVQDGDPSKEIKVPEGFDYELYNRNDINRILGPKASCISFK 80 (346)
T ss_pred CCCCcceEEEeccCch----hHHHHHHHhcCcccE---EEEecCCcccceeccCCCceeecCHHHHHhhhcccccccccC
Confidence 3456789999994333 566666677665421 22221 001 02588
Q ss_pred hhhhhhHHHHHHhhcCCccEEEEecCCCCCCCC
Q psy5933 181 RGKLLNIGYIEALKIKPFHCFIFHDVDLMPTNP 213 (406)
Q Consensus 181 RakLLNvG~~eA~k~~~~Dc~IFhDVDLIp~~d 213 (406)
=..-+|.|+..+ ..+|+|+.|-|++|.+|
T Consensus 81 ~~a~R~fGyL~s----~~~yivsiDDD~~Pa~d 109 (346)
T PLN03180 81 DSACRCFGYLVS----KKKYIFTIDDDCFVAKD 109 (346)
T ss_pred cccchhhhheee----cceEEEEECCCCCCCCC
Confidence 888899999987 46899999999999998
No 75
>PRK12465 xylose isomerase; Provisional
Probab=54.61 E-value=9 Score=40.83 Aligned_cols=37 Identities=22% Similarity=0.337 Sum_probs=24.3
Q ss_pred cccchhhhhhHHHHHHhhcCCccEEEEecCCCCCCCC
Q psy5933 177 AEFNRGKLLNIGYIEALKIKPFHCFIFHDVDLMPTNP 213 (406)
Q Consensus 177 g~FNRakLLNvG~~eA~k~~~~Dc~IFhDVDLIp~~d 213 (406)
++--+|+..=-++-|-......+++.|||+|++|+.+
T Consensus 82 ~~~~~Ak~k~daaFEf~~kLG~~~~~FHD~D~~Peg~ 118 (445)
T PRK12465 82 TALARAEAKSDAAFEFFTKLGVPYYCFHDIDLAPDAD 118 (445)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCeeeccccccCCCCC
Confidence 3444555543333333334678999999999999986
No 76
>PF13896 Glyco_transf_49: Glycosyl-transferase for dystroglycan
Probab=53.91 E-value=9 Score=38.72 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=26.2
Q ss_pred cchhhhhhHHHHHHhhcCCccEEEEecCCCCCCCC
Q psy5933 179 FNRGKLLNIGYIEALKIKPFHCFIFHDVDLMPTNP 213 (406)
Q Consensus 179 FNRakLLNvG~~eA~k~~~~Dc~IFhDVDLIp~~d 213 (406)
+--..++|+|...| .-++++..|+|++|..+
T Consensus 113 YPiN~LRNvAr~~a----~T~~v~~~DvD~~ps~~ 143 (317)
T PF13896_consen 113 YPINLLRNVARSGA----RTDYVFLLDVDFLPSPG 143 (317)
T ss_pred CChHHHHHHHHHhc----CcceEEEecceeeeCcc
Confidence 44457999999988 46899999999999977
No 77
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=50.12 E-value=98 Score=31.20 Aligned_cols=84 Identities=19% Similarity=0.271 Sum_probs=56.3
Q ss_pred cCCceEEEEEeecCchHHHHHHHHHHHH-------------------------HHh----h-c-----cccee-EEEEEE
Q psy5933 130 IPQHQVAIIVPYMNREGQLKTFLLHIHQ-------------------------FLQ----K-Q-----FISYQ-IFVIEQ 173 (406)
Q Consensus 130 ~~~~kVAIIIPyRnR~~hL~~fL~~L~p-------------------------~L~----r-Q-----~l~y~-I~VIeQ 173 (406)
..+.+|.|+.|.||-..+|..|+..|.. .|+ + | ...|. |.++.|
T Consensus 22 ~~~e~VLILtplrna~~~l~~y~~~L~~L~YP~~lIsLgfLv~d~~e~d~t~~~l~~~~~~~q~~~~~~~~F~~itIl~~ 101 (269)
T PF03452_consen 22 RNKESVLILTPLRNAASFLPDYFDNLLSLTYPHELISLGFLVSDSSEFDNTLKILEAALKKLQSHGPESKRFRSITILRK 101 (269)
T ss_pred ccCCeEEEEEecCCchHHHHHHHHHHHhCCCCchheEEEEEcCCCchhHHHHHHHHHHHHHHhccCcccCCcceEEEEcC
Confidence 5677899999999999999999999852 111 1 1 12453 666655
Q ss_pred cccc--ccc----------------hhhhhhHHHHHHhhcCCccEEEEecCCCCCCCCc
Q psy5933 174 RHPA--EFN----------------RGKLLNIGYIEALKIKPFHCFIFHDVDLMPTNPN 214 (406)
Q Consensus 174 ~d~g--~FN----------------RakLLNvG~~eA~k~~~~Dc~IFhDVDLIp~~d~ 214 (406)
.... .+. =|+++|--...|++ ..-+.+.+.|+|++-.+..
T Consensus 102 df~~~~~~~~~~RH~~~~Q~~RR~~mAraRN~LL~~aL~-p~~swVlWlDaDIv~~P~~ 159 (269)
T PF03452_consen 102 DFGQQLSQDRSERHAFEVQRPRRRAMARARNFLLSSALG-PWHSWVLWLDADIVETPPT 159 (269)
T ss_pred CCcccccCchhhccchhhHHHHHHHHHHHHHHHHHhhcC-CcccEEEEEecCcccCChH
Confidence 3321 111 14677887777776 3457899999999855443
No 78
>KOG2977|consensus
Probab=49.47 E-value=40 Score=34.63 Aligned_cols=40 Identities=30% Similarity=0.639 Sum_probs=30.2
Q ss_pred eEEEEEeecCchHHHHHHHHHHHHHHhh-cc----cceeEEEEEE
Q psy5933 134 QVAIIVPYMNREGQLKTFLLHIHQFLQK-QF----ISYQIFVIEQ 173 (406)
Q Consensus 134 kVAIIIPyRnR~~hL~~fL~~L~p~L~r-Q~----l~y~I~VIeQ 173 (406)
-++||||-||-+..+...|..-..+|+. +. ..|+|.|+..
T Consensus 68 ~lsVIVpaynE~~ri~~mldeav~~le~ry~~~~~F~~eiiVvdd 112 (323)
T KOG2977|consen 68 YLSVIVPAYNEEGRIGAMLDEAVDYLEKRYLSDKSFTYEIIVVDD 112 (323)
T ss_pred eeEEEEecCCcccchHHHHHHHHHHHHHHhccCCCCceeEEEeCC
Confidence 7999999999888877777766666653 32 3689999864
No 79
>COG2115 XylA Xylose isomerase [Carbohydrate transport and metabolism]
Probab=48.99 E-value=24 Score=36.87 Aligned_cols=69 Identities=19% Similarity=0.151 Sum_probs=38.8
Q ss_pred chHHHHHHHHHHHHHHhhcccceeEEEE---EEccccccchhhhhh-HHHHHHhhcCCccEEEEecCCCCCCCC
Q psy5933 144 REGQLKTFLLHIHQFLQKQFISYQIFVI---EQRHPAEFNRGKLLN-IGYIEALKIKPFHCFIFHDVDLMPTNP 213 (406)
Q Consensus 144 R~~hL~~fL~~L~p~L~rQ~l~y~I~VI---eQ~d~g~FNRakLLN-vG~~eA~k~~~~Dc~IFhDVDLIp~~d 213 (406)
=++||+--+.+.|.|--.-.=.|+.--. ||....+--+|+++= ++|..+.+ ....|+.|||+|.-|+..
T Consensus 39 m~dhLrFavayWHTf~~~G~DpFG~~t~~RPW~~~~~~md~Ak~kad~aFEff~k-L~vpyyCFHD~DvaPeG~ 111 (438)
T COG2115 39 MEEHLRFAVAYWHTFCWDGADPFGGGTFERPWQQPGDAMDLAKRKADVAFEFFEK-LGVPYYCFHDVDVAPEGA 111 (438)
T ss_pred HHHHHHHHHHHhhhhccCCCCCCCcccccCCccccccHHHHHHHHHHHHHHHHHH-hCCCeEeecccccCCCcc
Confidence 3689999999998664332222322111 111111233333332 33433333 467899999999999976
No 80
>PLN02923 xylose isomerase
Probab=46.90 E-value=14 Score=39.69 Aligned_cols=35 Identities=23% Similarity=0.335 Sum_probs=23.4
Q ss_pred ccchhhh-hhHHHHHHhhcCCccEEEEecCCCCCCCC
Q psy5933 178 EFNRGKL-LNIGYIEALKIKPFHCFIFHDVDLMPTNP 213 (406)
Q Consensus 178 ~FNRakL-LNvG~~eA~k~~~~Dc~IFhDVDLIp~~d 213 (406)
+--+|+. +.++|.. +.....+++.|||+|++|+.+
T Consensus 117 ~m~~A~~k~daaFEf-~~kLG~~y~cFHD~Dl~Peg~ 152 (478)
T PLN02923 117 SLAMAKRRMRANFEF-LKKLGVDRWCFHDRDIAPDGK 152 (478)
T ss_pred HHHHHHHHHHHHHHH-HHHhCCCeEccCccccCCCCC
Confidence 3444554 2334433 333578999999999999986
No 81
>TIGR02630 xylose_isom_A xylose isomerase. Members of this family are the enzyme xylose isomerase (5.3.1.5), which interconverts D-xylose and D-xylulose.
Probab=44.69 E-value=14 Score=39.42 Aligned_cols=19 Identities=26% Similarity=0.482 Sum_probs=16.7
Q ss_pred cCCccEEEEecCCCCCCCC
Q psy5933 195 IKPFHCFIFHDVDLMPTNP 213 (406)
Q Consensus 195 ~~~~Dc~IFhDVDLIp~~d 213 (406)
....+++.|||+|++|+.+
T Consensus 89 kLg~~~~~FHD~D~~peg~ 107 (434)
T TIGR02630 89 KLGVPYYCFHDRDIAPEGA 107 (434)
T ss_pred HhCCCeeccCccccCCCCC
Confidence 3578999999999999986
No 82
>PRK05474 xylose isomerase; Provisional
Probab=39.69 E-value=19 Score=38.54 Aligned_cols=18 Identities=33% Similarity=0.628 Sum_probs=16.3
Q ss_pred CCccEEEEecCCCCCCCC
Q psy5933 196 KPFHCFIFHDVDLMPTNP 213 (406)
Q Consensus 196 ~~~Dc~IFhDVDLIp~~d 213 (406)
-..+++.|||+|++|+.+
T Consensus 91 Lg~~~~~FHD~D~~peg~ 108 (437)
T PRK05474 91 LGVPYYCFHDVDVAPEGA 108 (437)
T ss_pred hCCCeeccCccccCCCCC
Confidence 578999999999999987
No 83
>PF09488 Osmo_MPGsynth: Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth); InterPro: IPR012812 This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together with mannosyl-3-phosphoglycerate phosphatase (MPGP), comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus (Rhodothermus obamensis), this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.; GO: 0050504 mannosyl-3-phosphoglycerate synthase activity, 0051479 mannosylglycerate biosynthetic process, 0005737 cytoplasm; PDB: 2WVM_A 2WVL_A 2WVK_A 2ZU7_B 2ZU9_B 2ZU8_A.
Probab=38.79 E-value=96 Score=32.77 Aligned_cols=61 Identities=23% Similarity=0.280 Sum_probs=32.3
Q ss_pred chHHHHHHHHHHHHHHhhcccceeEEEEEEcccc------------------cc--chhhhhhHHHHHHhhcCCccEEEE
Q psy5933 144 REGQLKTFLLHIHQFLQKQFISYQIFVIEQRHPA------------------EF--NRGKLLNIGYIEALKIKPFHCFIF 203 (406)
Q Consensus 144 R~~hL~~fL~~L~p~L~rQ~l~y~I~VIeQ~d~g------------------~F--NRakLLNvG~~eA~k~~~~Dc~IF 203 (406)
|...=..+|.++..+-+| .+++|+|-|.+ .- -||-.|=+|+..|.- ..-+|+=|
T Consensus 92 ~f~~E~d~l~~f~~~t~r-----~~~~vHQkDp~lA~Af~~aGy~~il~~~g~VR~GKgEGMiiGillAk~-~g~~YVGF 165 (381)
T PF09488_consen 92 RFKMEVDLLKHFCRLTRR-----QIIIVHQKDPGLAEAFKEAGYPEILDEDGLVRNGKGEGMIIGILLAKA-PGKRYVGF 165 (381)
T ss_dssp HHHHHHHHHHHHHHHCT-------EEEEETT-HHHHHHHHHTT--TTB-TTSSB-SSHHHHHHHHHHHHHH-TT-SEEEE
T ss_pred HHHHHHHHHHHHHHhhcC-----ceEEEecCCHHHHHHHHHcCcHHHhCCCCceecCchHHHHHHHHHHHh-cCCceEeE
Confidence 344434444444433333 58889987622 12 244556677777754 56799999
Q ss_pred ecCCCCC
Q psy5933 204 HDVDLMP 210 (406)
Q Consensus 204 hDVDLIp 210 (406)
.|.|-..
T Consensus 166 vDADNyi 172 (381)
T PF09488_consen 166 VDADNYI 172 (381)
T ss_dssp --TTBS-
T ss_pred eeccCCC
Confidence 9999643
No 84
>PF11735 CAP59_mtransfer: Cryptococcal mannosyltransferase 1 ; InterPro: IPR021047 The capsule of pathogenic fungi is a complex polysaccharide whose formation is determined by a number of enzymes including, most importantly, alpha-1,3-mannosyltransferase 1 [, ]. It is responsible for addition of mannose residues in an alpha-1,3 linkage to a polymannosly precursor.
Probab=35.57 E-value=1.7e+02 Score=28.83 Aligned_cols=78 Identities=17% Similarity=0.143 Sum_probs=53.6
Q ss_pred ceEEEEEeecCchHHHHHHHHHHHHHHhhcccceeEEEEEEccccc------cch----hhhhhHHHHHHh-----hcCC
Q psy5933 133 HQVAIIVPYMNREGQLKTFLLHIHQFLQKQFISYQIFVIEQRHPAE------FNR----GKLLNIGYIEAL-----KIKP 197 (406)
Q Consensus 133 ~kVAIIIPyRnR~~hL~~fL~~L~p~L~rQ~l~y~I~VIeQ~d~g~------FNR----akLLNvG~~eA~-----k~~~ 197 (406)
..|.|-|==-+-.+.-+..|..|.+.|.+.++.+.|...+...... =+| |.++|.+..--. ....
T Consensus 33 ~nv~vSIyE~~S~D~T~~~L~~L~~~L~~lgv~~~i~~~~~~~~~~~~~~~~~~RI~~LA~lRN~ALePL~~~~~~~~~~ 112 (241)
T PF11735_consen 33 ENVFVSIYESGSWDGTKEALRALDAELDALGVPHSIVLSDITHRDEIERPPRLRRIEYLAELRNRALEPLYDLARKRGRR 112 (241)
T ss_pred CeEEEEEEeCCCCccHHHHHHHHHHHHHhCCCCeEEEeCCCcccccccccchhhhHHHHHHHHhHHHHHHHhhhhccCCC
Confidence 4566666555666677788888999999999999998865433322 233 799999986544 1236
Q ss_pred ccEEEEecCCCCCC
Q psy5933 198 FHCFIFHDVDLMPT 211 (406)
Q Consensus 198 ~Dc~IFhDVDLIp~ 211 (406)
+|.+||.+ |.+..
T Consensus 113 fd~VlfLN-DV~f~ 125 (241)
T PF11735_consen 113 FDKVLFLN-DVFFC 125 (241)
T ss_pred cCEEEEec-CcccC
Confidence 88888876 55444
No 85
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.96 E-value=1.3e+02 Score=25.13 Aligned_cols=30 Identities=13% Similarity=0.197 Sum_probs=25.7
Q ss_pred CCCcCCceEEEEEeecCchHHHHHHHHHHH
Q psy5933 127 TDCIPQHQVAIIVPYMNREGQLKTFLLHIH 156 (406)
Q Consensus 127 ~~C~~~~kVAIIIPyRnR~~hL~~fL~~L~ 156 (406)
++|....++++++...++...|...|..+.
T Consensus 7 ~~~~~~~ktslif~l~~~pGsL~~vL~~Fa 36 (90)
T cd04931 7 ENSNKNGVISLIFSLKEEVGALAKVLRLFE 36 (90)
T ss_pred cccCCCCcEEEEEEcCCCCcHHHHHHHHHH
Confidence 456777789999999999999999999885
No 86
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=29.41 E-value=1.1e+02 Score=32.89 Aligned_cols=157 Identities=16% Similarity=0.147 Sum_probs=70.5
Q ss_pred CceEEEEEeecCchHHHHHHHHHHHHHHhhcccceeEEEE----------------------EEccccc---------cc
Q psy5933 132 QHQVAIIVPYMNREGQLKTFLLHIHQFLQKQFISYQIFVI----------------------EQRHPAE---------FN 180 (406)
Q Consensus 132 ~~kVAIIIPyRnR~~hL~~fL~~L~p~L~rQ~l~y~I~VI----------------------eQ~d~g~---------FN 180 (406)
...++|+|--+||.++|++.|..|...-. ..-.|+|+|- .|.+..+ |.
T Consensus 92 ~~~~pVlV~AcNRp~yl~r~L~sLl~~rp-~~~~fpIiVSQDg~~~~~~~vi~~y~~~v~~i~~~~~~~i~~~~~~~~~~ 170 (434)
T PF03071_consen 92 EPVIPVLVFACNRPDYLRRTLDSLLKYRP-SAEKFPIIVSQDGDDEEVAEVIKSYGDQVTYIQHPDFSPITIPPKEKKFK 170 (434)
T ss_dssp -----EEEEESS-TT-HHHHHHHHHHH-S--TTTS-EEEEE-TT-HHHHHHHHGGGGGSEEEE-S--S-----TT-GGGH
T ss_pred CCcceEEEEecCCcHHHHHHHHHHHHcCC-CCCCccEEEEecCCcHHHHHHHHHhhhhheeeecCCcCCceeCccccccc
Confidence 34578999999999999999998853311 1123555543 2222111 11
Q ss_pred hhhhhhHHHHHHhh----cCCccEEEEecCCCCCCCCceeeee------CCCcceeEEe-cccccc---------cCCcc
Q psy5933 181 RGKLLNIGYIEALK----IKPFHCFIFHDVDLMPTNPNNIYAC------TKQPRHMSVA-IDTFNY---------ELPYC 240 (406)
Q Consensus 181 RakLLNvG~~eA~k----~~~~Dc~IFhDVDLIp~~d~nlY~c------~~~PrHlS~~-~dkf~y---------rlpy~ 240 (406)
.-.-+..-++.|+. ...++.+|+..-||...+||.-|-- ...|.-++++ -+..++ .+-|+
T Consensus 171 ~y~~IA~HYk~aL~~vF~~~~~~~vIIlEDDL~isPDFf~Yf~~~~~ll~~D~sl~ciSawNdnG~~~~~~~~~~~~lyR 250 (434)
T PF03071_consen 171 GYYKIARHYKWALSQVFNKFKYSSVIILEDDLEISPDFFEYFSATLPLLENDPSLWCISAWNDNGKEHFVDDSRPSLLYR 250 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHTS--SEEEEEETTEEE-TTHHHHHHHHHHHHHH-TTEEEEES--TT-BGGGS-TT-TT-EEE
T ss_pred chHHHHHHHHHHHHHHHHhcCCceEEEEecCcccCccHHHHHHHHHHHHhcCCCeEEEEccccCCccccccCCCccceEe
Confidence 00001111223322 2367889999999999999864421 1122222211 110111 11233
Q ss_pred c-cc-cceeeecHhhhhhcCCCCCCCccCCCCchhHHHHH---HCCCeEEecccceeeEEec
Q psy5933 241 T-IF-GGAIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQRL---SNYYSICRFSKQVSEYVML 297 (406)
Q Consensus 241 ~-~f-GGv~a~~kedF~kVNGFdN~fwGWGGEDdDL~~RL---~~Glki~R~~~~~grY~ml 297 (406)
. +| |=-.+++|+-+..+. ..|...--|..-|. ..|-...||. +.|-.++
T Consensus 251 sdffpglGWml~r~~w~el~------~~Wp~~~WDdwmR~~~~rkgR~cIrPe--isRt~~f 304 (434)
T PF03071_consen 251 SDFFPGLGWMLTRELWDELE------PKWPKAFWDDWMRQPEQRKGRQCIRPE--ISRTYHF 304 (434)
T ss_dssp ESS---SSEEEEHHHHHHHG------GG--SS-HHHHHTSHHHHTT-EEEEES--SBSEEE-
T ss_pred cccCCchHHHhhHHHHHhhc------ccCCCCCchhhhcCccccCCCceeecc--CCCcccc
Confidence 2 33 412888999887644 34555555666664 7888888874 4444344
No 87
>PF13087 AAA_12: AAA domain; PDB: 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A 2XZL_A.
Probab=27.31 E-value=42 Score=30.13 Aligned_cols=71 Identities=17% Similarity=0.167 Sum_probs=43.6
Q ss_pred CCceEEEEEeecCchHHHHHHHHHHHHH-----H------hhcccceeEEEEEEccc------cccchhhhhhHHHHHHh
Q psy5933 131 PQHQVAIIVPYMNREGQLKTFLLHIHQF-----L------QKQFISYQIFVIEQRHP------AEFNRGKLLNIGYIEAL 193 (406)
Q Consensus 131 ~~~kVAIIIPyRnR~~hL~~fL~~L~p~-----L------~rQ~l~y~I~VIeQ~d~------g~FNRakLLNvG~~eA~ 193 (406)
...+|.||-||+.....|+..|....+. + .-|+.++.|+++--... +-++....+|+|+.-|.
T Consensus 111 ~~~~I~Iitpy~~Q~~~i~~~l~~~~~~~~~~~~~v~Tvd~~QG~E~diVi~s~v~~~~~~~~~f~~~~~r~nVA~SRAk 190 (200)
T PF13087_consen 111 KPSSIGIITPYRAQVALIRKALRSRYPSSPIKDIKVSTVDSFQGQEADIVIVSLVRTNSSSNIGFLNDPNRLNVALSRAK 190 (200)
T ss_dssp --GGEEEEES-HHHHHHHHHHHHHCSTCHHHHCSEEEEHHHHTT--EEEEEEEE---STTS-SGGGC-HHHHHHHHTSEE
T ss_pred ccCCceEEcCchHHHHHHHHHHhhhccccccceEEEecHHHhccccceEEEEEeccCCccccccccCCcCeeeeeHHHHh
Confidence 5678999999999999999988854221 1 23667788777754422 34567788999998875
Q ss_pred hcCCccEEEEec
Q psy5933 194 KIKPFHCFIFHD 205 (406)
Q Consensus 194 k~~~~Dc~IFhD 205 (406)
. -++|+-|
T Consensus 191 ~----~liiig~ 198 (200)
T PF13087_consen 191 S----GLIIIGN 198 (200)
T ss_dssp E----EEEEEE-
T ss_pred c----CEEEEec
Confidence 3 4565544
No 88
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=25.07 E-value=2.1e+02 Score=32.72 Aligned_cols=76 Identities=18% Similarity=0.306 Sum_probs=45.0
Q ss_pred CCCCcCCceEEEEEeec-----CchHHHHHHHHHHHHHHhhcccceeEEEEEEcccc------------------cc--c
Q psy5933 126 PTDCIPQHQVAIIVPYM-----NREGQLKTFLLHIHQFLQKQFISYQIFVIEQRHPA------------------EF--N 180 (406)
Q Consensus 126 P~~C~~~~kVAIIIPyR-----nR~~hL~~fL~~L~p~L~rQ~l~y~I~VIeQ~d~g------------------~F--N 180 (406)
|-+|. -|||.=. ||.+.=...+.++..+-+| .+++|+|-|.+ .- .
T Consensus 79 p~~c~-----ii~vsns~r~~~d~~~~e~~~~~~~~~~~~~-----~~~~vhq~dp~~a~a~~~~g~~~~~~~~~~vr~g 148 (694)
T PRK14502 79 PHDCL-----MIVISNSSKQEVDNFKNEKDIVNRFCRITHR-----QAIVVHQKNPELANAIADAGYPELLGEDGLIRSG 148 (694)
T ss_pred CCCCe-----EEEEeCCCCCchHHHHHHHHHHHHHHHhhcC-----ceEEEEcCCHHHHHHHHHcCChhhhCCCCceecC
Confidence 66663 3455444 3344444555555544444 47788887622 12 2
Q ss_pred hhhhhhHHHHHHhhcCCccEEEEecCCCCCCC
Q psy5933 181 RGKLLNIGYIEALKIKPFHCFIFHDVDLMPTN 212 (406)
Q Consensus 181 RakLLNvG~~eA~k~~~~Dc~IFhDVDLIp~~ 212 (406)
||-.|=+|+..|.- ..-+|+=|.|.|-....
T Consensus 149 k~egm~~g~~la~~-~g~~yvgfidadny~pg 179 (694)
T PRK14502 149 KAEGMILGIILTMF-SGRDYVGFIDTDNYIPG 179 (694)
T ss_pred cchHHHHHHHHHHh-cCCceEeEeeccCCCCc
Confidence 44556678777753 56799999999975433
No 89
>PF07312 DUF1459: Protein of unknown function (DUF1459); InterPro: IPR009924 This family consists of several hypothetical Caenorhabditis elegans proteins of around 85 residues in length. The function of this family is unknown.
Probab=24.56 E-value=26 Score=29.45 Aligned_cols=12 Identities=25% Similarity=1.171 Sum_probs=9.9
Q ss_pred CCCCCCCccCCC
Q psy5933 258 NGFSNLYFGWGA 269 (406)
Q Consensus 258 NGFdN~fwGWGG 269 (406)
--|++.|||||-
T Consensus 53 aAYPsv~waWGS 64 (84)
T PF07312_consen 53 AAYPSVYWAWGS 64 (84)
T ss_pred ccCcceeeeecc
Confidence 349999999993
No 90
>PRK14758 hypothetical protein; Provisional
Probab=21.50 E-value=1.1e+02 Score=20.72 Aligned_cols=20 Identities=25% Similarity=0.453 Sum_probs=14.8
Q ss_pred HhhhchhhHHHHHHHHHHHH
Q psy5933 29 VRRKGLLIVLVLVTLWLLLV 48 (406)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~ 48 (406)
|+||+.-++|+..++|-+.+
T Consensus 2 v~RYrFEliLivlIlCalia 21 (27)
T PRK14758 2 VGRYRFEFILIILILCALIA 21 (27)
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 67888888888778884443
No 91
>KOG2547|consensus
Probab=20.92 E-value=1.9e+02 Score=30.99 Aligned_cols=145 Identities=21% Similarity=0.291 Sum_probs=83.2
Q ss_pred CCceEEEEEeecCchHHHHHHHHHHHHHHhhcccceeE-EEEEEcccc------------------ccch-------hhh
Q psy5933 131 PQHQVAIIVPYMNREGQLKTFLLHIHQFLQKQFISYQI-FVIEQRHPA------------------EFNR-------GKL 184 (406)
Q Consensus 131 ~~~kVAIIIPyRnR~~hL~~fL~~L~p~L~rQ~l~y~I-~VIeQ~d~g------------------~FNR-------akL 184 (406)
....|+||-|.-+-.++|.. +++.|...|--.|++ +.+|..+|. -|=- -|+
T Consensus 83 ~LPgVSiikPl~G~d~nl~~---Nlesffts~Y~~~ElLfcv~s~eDpAi~vv~~Ll~kyp~VdAklf~gG~~vg~npKI 159 (431)
T KOG2547|consen 83 KLPGVSIIKPLKGVDPNLYH---NLESFFTSQYHKYELLFCVESSEDPAIEVVERLLKKYPNVDAKLFFGGEKVGLNPKI 159 (431)
T ss_pred CCCCceEEeecccCCchhHH---hHHHHHhhccCceEEEEEEccCCCcHHHHHHHHHhhCCCcceEEEEcccccccChhh
Confidence 56789999999999998755 445666777667774 445433321 1111 134
Q ss_pred hh--HHHHHHhhcCCccEEEEecCCCCCCCCcee-------------------eeeCCCcceeEEeccccc-----ccCC
Q psy5933 185 LN--IGYIEALKIKPFHCFIFHDVDLMPTNPNNI-------------------YACTKQPRHMSVAIDTFN-----YELP 238 (406)
Q Consensus 185 LN--vG~~eA~k~~~~Dc~IFhDVDLIp~~d~nl-------------------Y~c~~~PrHlS~~~dkf~-----yrlp 238 (406)
-| .|++.| .+|++.+.|.|.-..+|..+ |.|..+.-+...+.--|+ +-++
T Consensus 160 nN~mpgy~~a----~ydlvlisDsgI~m~pdtildm~t~M~shekmalvtq~py~~dr~Gf~atle~~~fgTsh~r~yl~ 235 (431)
T KOG2547|consen 160 NNMMPGYRAA----KYDLVLISDSGIFMKPDTILDMATTMMSHEKMALVTQTPYCKDRQGFDATLEQVYFGTSHPRIYLS 235 (431)
T ss_pred hccCHHHHHh----cCCEEEEecCCeeecCchHHHHHHhhhcccceeeecCCceeeccccchhhhhheeeccCCceEEEc
Confidence 44 577777 57899999999988888642 111111111111100011 1111
Q ss_pred ----ccccccceeee-cHhhhhhcCCCCCCCccCCCCchhHHHHH-HCCCe
Q psy5933 239 ----YCTIFGGAIAM-LQHQFRQVNGFSNLYFGWGAEDDDLFQRL-SNYYS 283 (406)
Q Consensus 239 ----y~~~fGGv~a~-~kedF~kVNGFdN~fwGWGGEDdDL~~RL-~~Glk 283 (406)
-...+||++++ .|+-+...+|++ .|.|.=-||-=++.-+ ..|.+
T Consensus 236 ~n~~~~~c~tgms~~mrK~~ld~~ggi~-~f~~yLaedyFaaksllSRG~k 285 (431)
T KOG2547|consen 236 GNVLGFNCSTGMSSMMRKEALDECGGIS-AFGGYLAEDYFAAKSLLSRGWK 285 (431)
T ss_pred cccccccccccHHHHHHHHHHHHhccHH-HHHHHHHHHHHHHHHHHhhhhh
Confidence 12346777665 555667777764 4544456776666666 77765
Done!