Query psy5933
Match_columns 406
No_of_seqs 249 out of 555
Neff 4.6
Searched_HMMs 13730
Date Fri Aug 16 22:14:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5933.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5933hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pzta_ c.68.1.2 (A:) beta 1,4 100.0 1.5E-80 1.1E-84 599.9 19.6 263 87-361 2-270 (271)
2 d1xhba2 c.68.1.17 (A:95-422) P 99.6 2.5E-15 1.8E-19 140.6 15.7 158 124-288 7-244 (328)
3 d1qg8a_ c.68.1.1 (A:) Spore co 98.9 4.3E-09 3.1E-13 93.6 11.5 146 133-287 1-206 (255)
4 d1omza_ c.68.1.15 (A:) Alpha-1 98.2 3.3E-07 2.4E-11 76.9 4.4 139 132-278 2-191 (265)
5 d2bo4a1 c.68.1.18 (A:2-382) Ma 97.1 0.00029 2.1E-08 68.8 6.5 149 136-289 2-210 (381)
6 d1fo8a_ c.68.1.10 (A:) N-acety 66.6 12 0.00087 34.9 9.6 145 135-288 4-205 (343)
7 d1phza1 d.58.18.3 (A:19-115) P 66.4 8.5 0.00062 29.5 7.1 34 123-156 5-38 (97)
8 d1a0ca_ c.1.15.3 (A:) D-xylose 42.4 2.8 0.0002 40.8 0.4 19 196-214 92-110 (437)
9 d1j6ua2 c.59.1.1 (A:296-446) U 31.7 62 0.0045 25.1 7.2 69 132-208 14-82 (151)
10 d1gwma_ b.18.1.19 (A:) Non-cat 28.0 5.5 0.0004 32.7 -0.2 75 319-399 67-150 (153)
11 d1o7qa_ c.68.1.9 (A:) alpha-1, 25.1 41 0.003 30.5 5.4 82 132-215 45-154 (287)
12 d2qmwa2 d.58.18.3 (A:185-264) 23.1 1.2E+02 0.0089 21.5 6.9 22 135-156 3-24 (80)
No 1
>d1pzta_ c.68.1.2 (A:) beta 1,4 galactosyltransferase (b4GalT1) {Cow (Bos taurus) [TaxId: 9913]}
Probab=100.00 E-value=1.5e-80 Score=599.87 Aligned_cols=263 Identities=38% Similarity=0.694 Sum_probs=253.4
Q ss_pred CCCCCc-CCCcceeecccCCCChHHHHH-hcCCCCCCCeecCCCCcCCceEEEEEeecCchHHHHHHHHHHHHHHhhccc
Q psy5933 87 LCSIFE-KHSKMFNKNFVFNDTALNILH-TRLNINKGGAWEPTDCIPQHQVAIIVPYMNREGQLKTFLLHIHQFLQKQFI 164 (406)
Q Consensus 87 ~Cp~~~-~l~G~~~~~~~~~~~~~~~v~-~~~~~~~GG~~~P~~C~~~~kVAIIIPyRnR~~hL~~fL~~L~p~L~rQ~l 164 (406)
.||+.| .|+||+.|+++..++ +++++ .+|.|++||+|+|++|+|++|||||||||||++||+.||++|+++|++|++
T Consensus 2 ~cp~~~p~l~g~~~~~~~~~~~-~~~~~~~~~~~~~gg~~~p~~c~~~~kvaIIIPyRdR~~hL~~fl~~l~~~L~~q~~ 80 (271)
T d1pzta_ 2 ACPEESPLLVGPMLIEFNIPVD-LKLVEQQNPKVKLGGRYTPMDCISPHKVAIIIPFRNRQEHLKYWLYYLHPILQRQQL 80 (271)
T ss_dssp BCCSSCTTCCCBCCCCCSSCCC-HHHHHHHCTTCBTTTEECCSSSBCSCEEEEEEEESSCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCccCcCceEeecCCCCC-HHHHHHhCCCcCCCCEECCCCCcccceEEEEEecCChHHHHHHHHHHHHHHHHhcCC
Confidence 699986 999999999988877 99999 899999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEEEccccccchhhhhhHHHHHHhhcCCccEEEEecCCCCCCCCceeeeeCCCcceeEEecccccccCCcccccc
Q psy5933 165 SYQIFVIEQRHPAEFNRGKLLNIGYIEALKIKPFHCFIFHDVDLMPTNPNNIYACTKQPRHMSVAIDTFNYELPYCTIFG 244 (406)
Q Consensus 165 ~y~I~VIeQ~d~g~FNRakLLNvG~~eA~k~~~~Dc~IFhDVDLIp~~d~nlY~c~~~PrHlS~~~dkf~yrlpy~~~fG 244 (406)
+|.|+||||.++.+||||+++|+||.+|++..++||+|||||||+|+++.+.|.|.+.|+|++.+.++++|+++|..++|
T Consensus 81 ~y~I~vieQ~~~~~FNRg~llNiGf~~a~~~~~~~~~ifHDVDllP~~~~~~Y~~~~~p~h~~~~~~~~~~~~~y~~~~G 160 (271)
T d1pzta_ 81 DYGIYVINQAGESMFNRAKLLNVGFKEALKDYDYNCFVFSDVDLIPMNDHNTYRCFSQPRHISVAMDKFGFSLPYVQYFG 160 (271)
T ss_dssp EEEEEEEEECSSSCCCHHHHHHHHHHHHHHHSCCCEEEEECTTEEESBTTSCCSCCSSCEECCCEEGGGTTSCSCTTCCC
T ss_pred CEEEEEEeccCCcchhhhhhhhHHHHHhhhccCccEEEEecCCcCcccccccccccccCcceeeeccccccccccccccc
Confidence 99999999999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred ceeeecHhhhhhcCCCCCCCccCCCCchhHHHHH-HCCCeEEecccceeeEEeccCC---CcchhHHHHHHHHcCCceec
Q psy5933 245 GAIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQRL-SNYYSICRFSKQVSEYVMLNHA---KETEKLERLEKLENGPFRFK 320 (406)
Q Consensus 245 Gv~a~~kedF~kVNGFdN~fwGWGGEDdDL~~RL-~~Glki~R~~~~~grY~ml~Hk---~~~~N~~R~~ll~~~~~r~~ 320 (406)
||++|+++||.+||||||.|||||||||||..|+ .+|+++.|++..+++|+|+.|. .+..|++|++++.++++||.
T Consensus 161 Gv~~~~k~~f~kINGfsN~ywGWGgEDddl~~R~~~~g~~i~R~~~~~~~y~~l~H~~d~~~~~n~~r~~~l~~~~~~~~ 240 (271)
T d1pzta_ 161 GVSALSKQQFLSINGFPNNYWGAGGEDDDIYNRLAFRGMSVSRPNAVIGKTRMIRHSRDKKNEPNPQRFDRIAHTKETML 240 (271)
T ss_dssp SEEEEEHHHHHHTTSCCSCCCSSSSHHHHHHHHHHHTTCCCBCCCTTTTEEEECCCSSCCCCCCCCCCCCCHHHHHHHTT
T ss_pred eeeeecHHHHhhcCCCCccccCCccccHHHHHHHHHcCCeEEccCCCccccceeeccCCcccccchHHHHHHHHHhhccc
Confidence 9999999999999999999999999999999999 9999999999999999999994 35578889999999999999
Q ss_pred cCcccccccceEEeEEEEeceeeEEEeCCCCcceeeEeccC
Q psy5933 321 TDGLNTLQNNYTVLAGEANGCVTQYKDNSSIDSCSFDLQVP 361 (406)
Q Consensus 321 ~DGLnsl~~~Y~vl~~~~~~lyT~i~~~~~~~~~~v~~~~~ 361 (406)
.|||||| +|++++++.+||||+| +|||++|
T Consensus 241 ~dGLnsl--~Y~v~~~~~~~lyt~i---------~Vdi~~p 270 (271)
T d1pzta_ 241 SDGLNSL--TYMVLEVQRYPLYTKI---------TVDIGTP 270 (271)
T ss_dssp TSSGGGC--CCEEEEEEECSSCEEE---------EEECCSC
T ss_pred CCCCcce--EEEEeEEEecCCeEEE---------EEEccCC
Confidence 9999999 9999999999999999 7777766
No 2
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.62 E-value=2.5e-15 Score=140.59 Aligned_cols=158 Identities=13% Similarity=0.142 Sum_probs=107.7
Q ss_pred ecCCCCcCC------ceEEEEEeecCch-HHHHHHHHHHHHHHhhc--ccceeEEEEEEcc-------------------
Q psy5933 124 WEPTDCIPQ------HQVAIIVPYMNRE-GQLKTFLLHIHQFLQKQ--FISYQIFVIEQRH------------------- 175 (406)
Q Consensus 124 ~~P~~C~~~------~kVAIIIPyRnR~-~hL~~fL~~L~p~L~rQ--~l~y~I~VIeQ~d------------------- 175 (406)
++|+.|+.. .+||||||+||+. +.|..+|..+ +++. ...++|+||....
T Consensus 7 ~r~~~~~~~~~~~~~P~vSIIIp~yNe~~~~l~~~l~Si---~~qt~~~~~~EIIvVDdgS~d~~~~~~l~~~~~~~~~~ 83 (328)
T d1xhba2 7 VRLEGCKTKVYPDNLPTTSVVIVFHNEAWSTLLRTVHSV---INRSPRHMIEEIVLVDDASERDFLKRPLESYVKKLKVP 83 (328)
T ss_dssp CSCGGGGTCCCCSCCCCEEEEEEESSCCHHHHHHHHHHH---HHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHHSSSSC
T ss_pred CCChhhhhccCCCCCCCEEEEEeccCCcHHHHHHHHHHH---HhcCCCCCCeEEEEEECCCChhhHHHHHHHHHHhcCCC
Confidence 457777643 4699999999986 4577777655 3443 3446888886321
Q ss_pred ------ccccchhhhhhHHHHHHhhcCCccEEEEecCCCCCCCCcee--e----------eeCC--------------Cc
Q psy5933 176 ------PAEFNRGKLLNIGYIEALKIKPFHCFIFHDVDLMPTNPNNI--Y----------ACTK--------------QP 223 (406)
Q Consensus 176 ------~g~FNRakLLNvG~~eA~k~~~~Dc~IFhDVDLIp~~d~nl--Y----------~c~~--------------~P 223 (406)
+.....+.++|.|++.| .+|+++|.|.|.++.++... . .++. .+
T Consensus 84 i~vi~~~~n~G~~~a~N~Gi~~a----~gd~i~flD~D~~~~p~~l~~l~~~~~~~~~~~v~~~~~~i~~~~~~~~~~~~ 159 (328)
T d1xhba2 84 VHVIRMEQRSGLIRARLKGAAVS----RGQVITFLDAHCECTAGWLEPLLARIKHDRRTVVCPIIDVISDDTFEYMAGSD 159 (328)
T ss_dssp EEEEECSSCCCHHHHHHHHHHHC----CSSEEEEEESSEEECTTCHHHHHHHHHHCTTEEEEEEEEEECSSSCCEECCCT
T ss_pred eEEEEecccccchHHHHHHHHhh----hcceeeecCcccccChhHHHHHHHHHhcCCCeEEecceeeeccCceeeccCCc
Confidence 12356678899999988 67999999999999888531 0 1110 00
Q ss_pred ceeEEeccccc-----------------ccCC--ccccccceeeecHhhhhhcCCCCCCCccCCCCchhHHHHH-HCCCe
Q psy5933 224 RHMSVAIDTFN-----------------YELP--YCTIFGGAIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQRL-SNYYS 283 (406)
Q Consensus 224 rHlS~~~dkf~-----------------yrlp--y~~~fGGv~a~~kedF~kVNGFdN~fwGWGGEDdDL~~RL-~~Glk 283 (406)
........++. ...| ....-||+++++|+.|.+|||||+.|-+||+||.||..|+ .+|.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~vGgfDe~~~~~g~ED~Dl~~R~~~~G~~ 239 (328)
T d1xhba2 160 MTYGGFNWKLNFRWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEISFRIWQCGGT 239 (328)
T ss_dssp TEEEEECTTCCEEEEECCHHHHHHTTTCTTSCEECSBCCSSSEEEEHHHHHHTTSCCTTSCTTCCCCSHHHHHHHHTTCE
T ss_pred cccccccccccccccccchhhhhccccccccccccceecceeeeeeHHHHHHhCCCCCCCcCcCchHHHHHHHHHHhCCe
Confidence 00000000000 0011 1234588999999999999999999999999999999999 99999
Q ss_pred EEecc
Q psy5933 284 ICRFS 288 (406)
Q Consensus 284 i~R~~ 288 (406)
+.-.|
T Consensus 240 i~~~p 244 (328)
T d1xhba2 240 LEIVT 244 (328)
T ss_dssp EEEEE
T ss_pred EEEeC
Confidence 88755
No 3
>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}
Probab=98.89 E-value=4.3e-09 Score=93.60 Aligned_cols=146 Identities=12% Similarity=0.202 Sum_probs=91.3
Q ss_pred ceEEEEEeecCchHHHHHHHHHHHHHHhhcccceeEEEEEEccc------------------------------cccchh
Q psy5933 133 HQVAIIVPYMNREGQLKTFLLHIHQFLQKQFISYQIFVIEQRHP------------------------------AEFNRG 182 (406)
Q Consensus 133 ~kVAIIIPyRnR~~hL~~fL~~L~p~L~rQ~l~y~I~VIeQ~d~------------------------------g~FNRa 182 (406)
++|+||||.||+++.|+.+|..+. .+.--+++|+||..... .....+
T Consensus 1 P~vSiiip~yN~~~~l~~~l~Si~---~Qt~~~~eiivvdd~S~d~t~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~g~~ 77 (255)
T d1qg8a_ 1 PKVSVIMTSYNKSDYVAKSISSIL---SQTFSDFELFIMDDNSNEETLNVIRPFLNDNRVRFYQSDISGVKERTEKTRYA 77 (255)
T ss_dssp CCEEEEEEESSCTTTHHHHHHHHH---TCSCCCEEEEEEECSCCHHHHHHHGGGGGSTTEEEEECCCCSHHHHHSSCHHH
T ss_pred CEEEEEEecCCCHHHHHHHHHHHH---hCCCCCeEEEEEECCCCccHHHHHHHhhhhcccccccccccccccccccchhc
Confidence 479999999999999999999763 33334688888864321 234566
Q ss_pred hhhhHHHHHHhhcCCccEEEEecCCCCCCCCcee--eeeC-CCc---------ceeEE---------ec---ccccccCC
Q psy5933 183 KLLNIGYIEALKIKPFHCFIFHDVDLMPTNPNNI--YACT-KQP---------RHMSV---------AI---DTFNYELP 238 (406)
Q Consensus 183 kLLNvG~~eA~k~~~~Dc~IFhDVDLIp~~d~nl--Y~c~-~~P---------rHlS~---------~~---dkf~yrlp 238 (406)
.++|.|+..| ++|+++|.|.|.++.++... ..+- ..| +.+.. .. ....+ ..
T Consensus 78 ~a~N~gi~~a----~g~~i~~lD~Dd~~~p~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 152 (255)
T d1qg8a_ 78 ALINQAIEMA----EGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVIYSASKTYHLNENRDIVKETVRPAAQVTW-NA 152 (255)
T ss_dssp HHHHHHHHHC----CCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCEEEEEEEEEEEC---CEEEEEEECCCSCBS-CC
T ss_pred cccccccccc----ccccccccccccccccchHHHHHHHHHhCCCCCeEeecceeeeeCCCCcEeeeecccchhhhh-hh
Confidence 7899999988 67999999999988877421 0000 000 00000 00 00011 11
Q ss_pred ccccccceeeecHhhhhhcCC-----CCCCCccCCCCchhHHHHH-HCCCeEEec
Q psy5933 239 YCTIFGGAIAMLQHQFRQVNG-----FSNLYFGWGAEDDDLFQRL-SNYYSICRF 287 (406)
Q Consensus 239 y~~~fGGv~a~~kedF~kVNG-----FdN~fwGWGGEDdDL~~RL-~~Glki~R~ 287 (406)
....-++.+++.++-+.++.+ |++..+-|+.||.||+.|+ ..+ ++...
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~dl~lrl~~~~-~~~~i 206 (255)
T d1qg8a_ 153 PCAIDHCSVMHRYSVLEKVKEKFGSYWDESPAFYRIGDARFFWRVNHFY-PFYPL 206 (255)
T ss_dssp TTTSCGGGEEEETHHHHHHHHHHSSSSCCCGGGSTTHHHHHHHHHTTTC-CBEEE
T ss_pred cccccchhHHHHHHHHHHHHHhhCCCccccchhcchhhHHHHHHHHcCC-CEEEe
Confidence 122334556677777777644 4456667889999999999 543 44433
No 4
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.23 E-value=3.3e-07 Score=76.85 Aligned_cols=139 Identities=14% Similarity=0.112 Sum_probs=85.8
Q ss_pred CceEEEEEeecCchHHHHHHHHHHHHHHhhcccceeEEEEEEcc----------------------ccccchhhhhhHHH
Q psy5933 132 QHQVAIIVPYMNREGQLKTFLLHIHQFLQKQFISYQIFVIEQRH----------------------PAEFNRGKLLNIGY 189 (406)
Q Consensus 132 ~~kVAIIIPyRnR~~hL~~fL~~L~p~L~rQ~l~y~I~VIeQ~d----------------------~g~FNRakLLNvG~ 189 (406)
..+.+||||.|||++.|+.+|..+ .+|....+|+||+-.+ ...-..+.++|.|+
T Consensus 2 ~~~~tvii~tyn~~~~l~~~l~sl----~~q~~~~~~iiV~d~~sd~~~~~i~~~~~~~~~~~~~~~~~~g~~~a~n~~~ 77 (265)
T d1omza_ 2 LDSFTLIMQTYNRTDLLLRLLNHY----QAVPSLHKVIVVWNNVGEKGPEELWNSLGPHPIPVIFKPQTANKMRNRLQVF 77 (265)
T ss_dssp TTCEEEEEEESSCHHHHHHHHHHH----TTSTTEEEEEEEECCTTCCCTHHHHHHTCCCSSCEEEEECSSCCGGGGGSCC
T ss_pred CCcEEEEEEcCCCHHHHHHHHHHH----HcCCCcCeEEEEECCCCCccHHHHHHHhcccceEEEEecCCCCchhhhhhhH
Confidence 468999999999999999999987 5665555566654211 11235678899999
Q ss_pred HHHhhcCCccEEEEecCCCCCCCCcee--eee-CC--------CcceeEEecc-----------cccc--cCCccccccc
Q psy5933 190 IEALKIKPFHCFIFHDVDLMPTNPNNI--YAC-TK--------QPRHMSVAID-----------TFNY--ELPYCTIFGG 245 (406)
Q Consensus 190 ~eA~k~~~~Dc~IFhDVDLIp~~d~nl--Y~c-~~--------~PrHlS~~~d-----------kf~y--rlpy~~~fGG 245 (406)
..| ..|+++|.|.|.++.++... ..+ .. .++....... ...+ ...+....|+
T Consensus 78 ~~a----~ge~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (265)
T d1omza_ 78 PEV----ETNAVLMVDDDTLISAQDLVFAFSIWQQFPDQIIGFVPRKHVSTSSGIYSYGGFELQTPGPGNGDQYSMVLIG 153 (265)
T ss_dssp TTC----CSSEEEEECTTEEECHHHHHHHHHHHTTSTTSEEESCEEEEEEEETTEEEEECTTSCCCSSSSSCCBSEECTT
T ss_pred HhC----CcCEEEEeCcccCCCHHHHHHHHHHHHhCCCcceecccccccccCCcccccccccccccccccccccceeccc
Confidence 887 67999999999999887531 100 00 1111100000 0000 0122345577
Q ss_pred eeeecHhhhhhcCCCCCCCccC-----CCCchhHHHHH
Q psy5933 246 AIAMLQHQFRQVNGFSNLYFGW-----GAEDDDLFQRL 278 (406)
Q Consensus 246 v~a~~kedF~kVNGFdN~fwGW-----GGEDdDL~~RL 278 (406)
...+.++-+...+++.+...++ +.||.++...+
T Consensus 154 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 191 (265)
T d1omza_ 154 ASFFNSKYLELFQKQPAAVHALIDETQNCDDIAMNFLV 191 (265)
T ss_dssp EEEEETHHHHHHHTSCHHHHHHHHHHTCCHHHHHHHHH
T ss_pred eeEecHHHHHHHhhhHHHHhhhhhhhcchHHHHHHHHH
Confidence 7778888887777776543322 34677776665
No 5
>d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS {Rhodothermus marinus [TaxId: 29549]}
Probab=97.09 E-value=0.00029 Score=68.85 Aligned_cols=149 Identities=15% Similarity=0.098 Sum_probs=83.9
Q ss_pred EEEEeecCchHHHHHHHHHHHHHHhhcccceeEEEEEEcccccc-------------------------------chhhh
Q psy5933 136 AIIVPYMNREGQLKTFLLHIHQFLQKQFISYQIFVIEQRHPAEF-------------------------------NRGKL 184 (406)
Q Consensus 136 AIIIPyRnR~~hL~~fL~~L~p~L~rQ~l~y~I~VIeQ~d~g~F-------------------------------NRakL 184 (406)
.||||++|-+..+ +......+.+...-.+|+|+....++++ .||.+
T Consensus 2 lVVIP~~NEe~~i---l~~~v~~~a~~P~~~eIvVvDdsSdDtt~~i~~~~~~~~~~~~~~v~~~~~~~l~~~~~GKG~g 78 (381)
T d2bo4a1 2 LVVFPFKHEHPEV---LLHNVRVAAAHPRVHEVLCIGYERDQTYEAVERAAPEISRATGTPVSVRLQERLGTLRPGKGDG 78 (381)
T ss_dssp EEEEECCSSCHHH---HHHHHHHHHHSTTCCEEEEEESSCCHHHHHHHHHHHHHHHHHSCCEEEEECCCCSSSSSSHHHH
T ss_pred EEEEEcCCCcHHH---HHHHHHHHHhCCCeeEEEEEcCCCCCcHHHHHHHhhhhhccccccchhhhhcccccccCCCcHH
Confidence 6999999976433 2222233344443446666654443222 34444
Q ss_pred hhHHHHHHhhcCCccEEEEecCCCCCC-CCce-----------eeeeCCCcceeEEec--ccc-----------cccCCc
Q psy5933 185 LNIGYIEALKIKPFHCFIFHDVDLMPT-NPNN-----------IYACTKQPRHMSVAI--DTF-----------NYELPY 239 (406)
Q Consensus 185 LNvG~~eA~k~~~~Dc~IFhDVDLIp~-~d~n-----------lY~c~~~PrHlS~~~--dkf-----------~yrlpy 239 (406)
+..|+..+....++|+++|+|.|+... ++.. -+.++..+|+..-.. ..+ .+..+.
T Consensus 79 ~~~A~~~g~~~a~gd~lvflDADl~~~~pe~i~~L~~~i~~g~d~V~g~y~R~~~~grvt~~l~~pll~~l~~~~~~~~i 158 (381)
T d2bo4a1 79 MNTALRYFLEETQWERIHFYDADITSFGPDWITKAEEAADFGYGLVRHYFPRASTDAMITWMITRTGFALLWPHTELSWI 158 (381)
T ss_dssp HHHHHHHHHHHCCCSEEEECCTTCSSCCHHHHHHHHHHHHTTCSEEEEECCCCTTSCHHHHHTHHHHHHHHCTTSSGGGC
T ss_pred HHHHHHHHHHhCCCCEEEEEcCCcCcCCHHHHHHHHHHHhhhcCeEEEeeccccCCCceehHhhHHHHHHHhhhhccccc
Confidence 445555555556899999999999543 2211 112222233310000 000 011123
Q ss_pred cccccceeeecHhhhhhcCCCCCCC---ccCCCCchhHHHHH-HCCCeEEeccc
Q psy5933 240 CTIFGGAIAMLQHQFRQVNGFSNLY---FGWGAEDDDLFQRL-SNYYSICRFSK 289 (406)
Q Consensus 240 ~~~fGGv~a~~kedF~kVNGFdN~f---wGWGGEDdDL~~RL-~~Glki~R~~~ 289 (406)
....||-.+|+++-+..+. .++.. .||| =|.+|-... ..|++|...+.
T Consensus 159 ~dPl~G~~a~~R~~~~~L~-~~~~v~~~~~~G-~Di~lt~~A~~~G~rI~EV~i 210 (381)
T d2bo4a1 159 EQPLGGELLMRREVAAMLY-EDERVRRRSDWG-IDTLYTFVTVQQGVSIYECYI 210 (381)
T ss_dssp SCTTCCCEEEEHHHHHHHH-HCHHHHTCCSTT-HHHHHHHHHHHTTCCEEEEEC
T ss_pred ccCCcccceeeHHHHHHhh-hhccccccCCcc-cchHHHHHHHHcCCeEEecCC
Confidence 4556999999999887664 11222 2787 578888888 99999988653
No 6
>d1fo8a_ c.68.1.10 (A:) N-acetylglucosaminyltransferase I {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=66.61 E-value=12 Score=34.93 Aligned_cols=145 Identities=16% Similarity=0.097 Sum_probs=82.1
Q ss_pred EEEEEeecCchHHHHHHHHHHHHHHhhcccceeEEEEEE----------------------ccccccc---------hhh
Q psy5933 135 VAIIVPYMNREGQLKTFLLHIHQFLQKQFISYQIFVIEQ----------------------RHPAEFN---------RGK 183 (406)
Q Consensus 135 VAIIIPyRnR~~hL~~fL~~L~p~L~rQ~l~y~I~VIeQ----------------------~d~g~FN---------Rak 183 (406)
++|+|-.+||+ +|++.|..|...- ...-+++|+|.-. .+...+. ...
T Consensus 4 iPVlv~a~NRP-~l~r~LesLlk~~-p~~~~~~I~Vs~DG~~~~~~~~v~~~~~~v~~I~~~~~~~~~~~~~~~k~~~n~ 81 (343)
T d1fo8a_ 4 IPILVIACDRS-TVRRCLDKLLHYR-PSAELFPIIVSQDCGHEETAQVIASYGSAVTHIRQPDLSNIAVQPDHRKFQGYY 81 (343)
T ss_dssp CCEEEEESSCT-THHHHHHHHHHHC-SCTTTSCEEEEECTTCHHHHHHHHTTGGGSEEEECSCCCCCCCCTTCGGGHHHH
T ss_pred ccEEEEEcCHH-HHHHHHHHHHhcC-ccccCccEEEEecCCchhHHHHHHHHHHHHHHhcCCccccceecchhhcccchh
Confidence 67899999998 7999998884221 0122355666432 1111111 011
Q ss_pred hhhHHHHHHhh----cCCccEEEEecCCCCCCCCceee--------eeCCCcceeEEeccccccc------CC---cc-c
Q psy5933 184 LLNIGYIEALK----IKPFHCFIFHDVDLMPTNPNNIY--------ACTKQPRHMSVAIDTFNYE------LP---YC-T 241 (406)
Q Consensus 184 LLNvG~~eA~k----~~~~Dc~IFhDVDLIp~~d~nlY--------~c~~~PrHlS~~~dkf~yr------lp---y~-~ 241 (406)
.+..++..|+. ..+++.+|+..-|+++.+|+.-| .....--+.|...+ .++. .| |+ .
T Consensus 82 giarhy~~AL~~~F~~~~~~~~IiLEDDl~~spdFf~y~~~~l~~~~~D~~i~~IS~wNd-nG~~~~~~~~~~~~lyrs~ 160 (343)
T d1fo8a_ 82 KIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQATYPLLKADPSLWCVSAWND-NGKEQMVDSSKPELLYRTD 160 (343)
T ss_dssp HHHHHHHHHHHHHHTTSCCSEEEEEETTEEECTTHHHHHHHHHHHHHHCTTEEEEESCCT-TCBGGGSCTTCTTCEEEES
T ss_pred HHHHHHHHHHHHHhcccCCceEEEEecCceeeHHHHHHHHHHHHHHhcCCCEEEEecccc-CCCcccccCCCCceEEeec
Confidence 12223344443 23578999999999999998533 22222223332211 1110 01 21 2
Q ss_pred c-ccceeeecHhhhhhcCCCCCCCccCCCCchhHHHHH---HCCCeEEecc
Q psy5933 242 I-FGGAIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQRL---SNYYSICRFS 288 (406)
Q Consensus 242 ~-fGGv~a~~kedF~kVNGFdN~fwGWGGEDdDL~~RL---~~Glki~R~~ 288 (406)
+ -|--.++|++.+.++. -.|...+-|..-|. ..|=...||+
T Consensus 161 ~fpg~GW~~~r~~W~el~------~kwp~~~Wd~w~r~~~~rkgr~cI~Pe 205 (343)
T d1fo8a_ 161 FFPGLGWLLLAELWAELE------PKWPKAFWDDWMRRPEQRKGRACVRPE 205 (343)
T ss_dssp SCCCSSEEEEHHHHHHHG------GGCCSSCHHHHHTSHHHHTTCEEEEES
T ss_pred CCCchhhheeHHHHHHhh------hcCCCCCcHHhhhhHHhcCCCeeeccC
Confidence 2 3556788898888766 36888888888886 6676677765
No 7
>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=66.45 E-value=8.5 Score=29.49 Aligned_cols=34 Identities=12% Similarity=0.212 Sum_probs=29.3
Q ss_pred eecCCCCcCCceEEEEEeecCchHHHHHHHHHHH
Q psy5933 123 AWEPTDCIPQHQVAIIVPYMNREGQLKTFLLHIH 156 (406)
Q Consensus 123 ~~~P~~C~~~~kVAIIIPyRnR~~hL~~fL~~L~ 156 (406)
.|.+..+....+++|++...|+.-.|...|..+.
T Consensus 5 ~~~e~~~~~~~ktSl~f~~~~~pGaL~~vL~~f~ 38 (97)
T d1phza1 5 SYIEDNSNQNGAISLIFSLKEEVGALAKVLRLFE 38 (97)
T ss_dssp SCCCCCCCSSCCEEEEEEEECCTTHHHHHHHHHH
T ss_pred CcCcCCCCCCCcEEEEEEeCCCCCHHHHHHHHHH
Confidence 4556678888899999999999999999999774
No 8
>d1a0ca_ c.1.15.3 (A:) D-xylose isomerase {Clostridium thermosulfurogenes, also known as Thermoanaerobacter thermosulfurigenes [TaxId: 33950]}
Probab=42.43 E-value=2.8 Score=40.81 Aligned_cols=19 Identities=32% Similarity=0.513 Sum_probs=16.8
Q ss_pred CCccEEEEecCCCCCCCCc
Q psy5933 196 KPFHCFIFHDVDLMPTNPN 214 (406)
Q Consensus 196 ~~~Dc~IFhDVDLIp~~d~ 214 (406)
...+++.|||+|++|+.+.
T Consensus 92 lg~~~~~FHD~D~~p~g~s 110 (437)
T d1a0ca_ 92 INAPYFCFHDRDIAPEGDT 110 (437)
T ss_dssp HTCSEEEEEHHHHSCCCSS
T ss_pred hCCceEeecccccCCCCCc
Confidence 4789999999999999874
No 9
>d1j6ua2 c.59.1.1 (A:296-446) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}
Probab=31.73 E-value=62 Score=25.10 Aligned_cols=69 Identities=17% Similarity=0.250 Sum_probs=45.2
Q ss_pred CceEEEEEeecCchHHHHHHHHHHHHHHhhcccceeEEEEEEccccccchhhhhhHHHHHHhhcCCccEEEEecCCC
Q psy5933 132 QHQVAIIVPYMNREGQLKTFLLHIHQFLQKQFISYQIFVIEQRHPAEFNRGKLLNIGYIEALKIKPFHCFIFHDVDL 208 (406)
Q Consensus 132 ~~kVAIIIPyRnR~~hL~~fL~~L~p~L~rQ~l~y~I~VIeQ~d~g~FNRakLLNvG~~eA~k~~~~Dc~IFhDVDL 208 (406)
...+.||+=|=-=+..++.+|..+.... -.-.|++|-|.. .|+|.+.+-..+..|++ ..|.+|+.|+.-
T Consensus 14 ~~~~~vidDyAH~P~~i~a~l~a~r~~~----~~~~ii~vf~p~--~~~r~~~~~~~~~~~~~--~aD~vilt~~y~ 82 (151)
T d1j6ua2 14 ETNIYVIDDYAHTPDEIRNLLQTAKEVF----ENEKIVVIFQPH--RYSRLEREDGNFAKALQ--LADEVVVTEVYD 82 (151)
T ss_dssp TTTEEEEEECCCSHHHHHHHHHHHHHHC----SSSEEEEEECCB--C--------CHHHHHHT--TSSEEEECCCBC
T ss_pred CCCEEEEEECCCCHHHHHHHHHHhhhhh----cccceeeeeecc--ccchhhHHHHHHHHHhh--cccceeeecccc
Confidence 3457788889889999999999885322 234788888876 36777777777777876 689999987653
No 10
>d1gwma_ b.18.1.19 (A:) Non-catalytic protein 1, Ncp1 {Piromyces equi [TaxId: 99929]}
Probab=28.01 E-value=5.5 Score=32.69 Aligned_cols=75 Identities=15% Similarity=0.126 Sum_probs=38.6
Q ss_pred eccCcccccc-------cceEEeEEEEeceeeEEEeCC--CCcceeeEeccCcccceEEEEEEeeccccccccccccccc
Q psy5933 319 FKTDGLNTLQ-------NNYTVLAGEANGCVTQYKDNS--SIDSCSFDLQVPHSALQMINVVIDAAADHLDYRWRESHDI 389 (406)
Q Consensus 319 ~~~DGLnsl~-------~~Y~vl~~~~~~lyT~i~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (406)
++..|+-.++ ++++|=+.....=||-+..++ ...+=.+++|--+.++-.|-|+-=+ +.=-.-.|-
T Consensus 67 ~K~EG~VKi~V~~~~~~E~F~V~s~~~S~~~~~Y~~~VD~~~~FDRI~~QD~P~~~~~I~~r~ii------~STGS~DDF 140 (153)
T d1gwma_ 67 MKNEGKVKILVENSEADEKFEVETISPSDEYVTYILDVDFDLPFDRIDFQDAPGNGDRIWIKNLV------HSTGSADDF 140 (153)
T ss_dssp EEESSCEEEEEEETTTTEEEEEEEECCEEEEEEEEEECCCSSCBCEEEEEETTCSCCCEEEEEEE------EESSCGGGC
T ss_pred EecCcEEEEEEecCCcccceeeeeeccccccEEEEEeccCcccccEEEEecCCCCCCeEEEEEEE------ecccchhcc
Confidence 3455655443 256666666566666654433 3345566666666666544443211 111122466
Q ss_pred CCCccccccc
Q psy5933 390 NEPESIVSHH 399 (406)
Q Consensus 390 ~~~~~~~~~~ 399 (406)
+.|-.+--||
T Consensus 141 ~~P~~~~~~~ 150 (153)
T d1gwma_ 141 VDPINLEHHH 150 (153)
T ss_dssp CCCGGGSSCC
T ss_pred CCCccccccc
Confidence 6776665555
No 11
>d1o7qa_ c.68.1.9 (A:) alpha-1,3-galactosyltransferase catalytic domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=25.11 E-value=41 Score=30.47 Aligned_cols=82 Identities=16% Similarity=0.167 Sum_probs=50.2
Q ss_pred CceEEEEEeecCchH--HHHHHHHHHHHH-HhhcccceeEEE-------------------EE-Eccc----cccchhhh
Q psy5933 132 QHQVAIIVPYMNREG--QLKTFLLHIHQF-LQKQFISYQIFV-------------------IE-QRHP----AEFNRGKL 184 (406)
Q Consensus 132 ~~kVAIIIPyRnR~~--hL~~fL~~L~p~-L~rQ~l~y~I~V-------------------Ie-Q~d~----g~FNRakL 184 (406)
.-+|+|.+=-=++.- -|+.|+..-..+ |..++..|-|+. +. |... -+-.|=+.
T Consensus 45 ~~tIgl~vfAtgkY~~~Fl~~FleSaEk~Fm~g~~v~yyVFTD~~~~~P~i~l~~~r~~~v~~v~~~~~Wp~iTL~Rm~~ 124 (287)
T d1o7qa_ 45 KITVGLTVFAVGRYIEHYLEEFLTSANKHFMVGHPVIFYIMVDDVSRMPLIELGPLRSFKVFKIKPEKRWQDISMMRMKT 124 (287)
T ss_dssp TCCEEEEEEECTTHHHHHHHHHHHHHHHHBSTTSCEEEEEEESCGGGCCCCCCCTTEEEEEEECCCCSSHHHHHHHHHHH
T ss_pred CceEEEEEEEeChhHHHHHHHHHHHHHHhcCCCCeEEEEEEECCcccCCccccCCccceEEEEccccCCCchhHHHHHHH
Confidence 356888887788884 488888888764 555555544433 21 1111 12344444
Q ss_pred hhHHHHH-HhhcCCccEEEEecCCCCCCCCce
Q psy5933 185 LNIGYIE-ALKIKPFHCFIFHDVDLMPTNPNN 215 (406)
Q Consensus 185 LNvG~~e-A~k~~~~Dc~IFhDVDLIp~~d~n 215 (406)
++..+.+ .. .++|+++|.|+||.+.+...
T Consensus 125 i~~~i~~~~~--~e~Dylf~~DaDm~f~~~vg 154 (287)
T d1o7qa_ 125 IGEHIVAHIQ--HEVDFLFCMDVDQVFQDKFG 154 (287)
T ss_dssp HHHHHHHTHH--HHCSEEEEECSSEEECSCBC
T ss_pred HHHHHHHhhh--ccCCeEEEEeCCceEecccc
Confidence 4444322 22 36899999999999988753
No 12
>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=23.07 E-value=1.2e+02 Score=21.54 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=19.2
Q ss_pred EEEEEeecCchHHHHHHHHHHH
Q psy5933 135 VAIIVPYMNREGQLKTFLLHIH 156 (406)
Q Consensus 135 VAIIIPyRnR~~hL~~fL~~L~ 156 (406)
+.+|+|-.||.-.|...|..+.
T Consensus 3 ~~~i~~~~d~pGaL~~vL~~F~ 24 (80)
T d2qmwa2 3 MFLITPMHDKPGLLASVLNTFA 24 (80)
T ss_dssp EEEEEESSCCTTHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHH
Confidence 5688899999999999999773
Done!