RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5933
(406 letters)
>gnl|CDD|132999 cd00899, b4GalT, Beta-4-Galactosyltransferase is involved in the
formation of the poly-N-acetyllactosamine core
structures present in glycoproteins and
glycosphingolipids. Beta-4-Galactosyltransferase
transfers galactose from uridine diphosphogalactose to
the terminal beta-N-acetylglucosamine residues, hereby
forming the poly-N-acetyllactosamine core structures
present in glycoproteins and glycosphingolipids. At
least seven homologous beta-4-galactosyltransferase
isoforms have been identified that use different types
of glycoproteins and glycolipids as substrates. Of the
seven identified members of the
beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1
to -T7), b1,4-Gal-T1 is most characterized
(biochemically). It is a Golgi-resident type II membrane
enzyme with a cytoplasmic domain, membrane spanning
region, and a stem region and catalytic domain facing
the lumen.
Length = 219
Score = 250 bits (642), Expect = 3e-82
Identities = 104/206 (50%), Positives = 135/206 (65%), Gaps = 6/206 (2%)
Query: 133 HQVAIIVPYMNREGQLKTFLLHIHQFLQKQFISYQIFVIEQRHPAEFNRGKLLNIGYIEA 192
H+VAIIVP+ NR L FL H+H FLQ+Q + Y+IFVIEQ FNR KLLN+G++EA
Sbjct: 2 HKVAIIVPFRNRFEHLLIFLPHLHPFLQRQQLDYRIFVIEQVGNFRFNRAKLLNVGFLEA 61
Query: 193 LKIKPFHCFIFHDVDLMPTNPNNIYACTKQPRHMSVAIDTFNYELPYCTIFGGAIAMLQH 252
LK + CFIFHDVDL+P N N+Y C + PRH+SV +D F+Y+LPY T FGG +A+ +
Sbjct: 62 LKDGDWDCFIFHDVDLLPENDRNLYGCEEGPRHLSVPLDKFHYKLPYKTYFGGVLALTRE 121
Query: 253 QFRQVNGFSNLYFGWGAEDDDLFQRL-SNYYSICRFSKQVSEYVMLNH---AKETEKLER 308
QFR+VNGFSN Y+GWG EDDDL+ R+ + I R S Y M+ H + + R
Sbjct: 122 QFRKVNGFSNAYWGWGGEDDDLYNRIKAAGLKITRPSGDTGRYKMIRHIHDKRNRDNPNR 181
Query: 309 LEKLENGPFRFKTDGLNTLQNNYTVL 334
L+N R +DGLN+L Y VL
Sbjct: 182 FALLQNSRERDHSDGLNSL--KYKVL 205
>gnl|CDD|222351 pfam13733, Glyco_transf_7N, N-terminal region of glycosyl
transferase group 7. This is the N-terminal half of a
family of galactosyltransferases from a wide range of
Metazoa with three related galactosyltransferases
activities, all three of which are possessed by one
sequence in some cases. EC:2.4.1.90, N-acetyllactosamine
synthase; EC:2.4.1.38,
Beta-N-acetylglucosaminyl-glycopeptide beta-1,4-
galactosyltransferase; and EC:2.4.1.22 Lactose synthase.
Note that N-acetyllactosamine synthase is a component of
Lactose synthase along with alpha-lactalbumin, in the
absence of alpha-lactalbumin EC:2.4.1.90 is the
catalyzed reaction.
Length = 136
Score = 134 bits (340), Expect = 2e-38
Identities = 52/114 (45%), Positives = 74/114 (64%)
Query: 109 LNILHTRLNINKGGAWEPTDCIPQHQVAIIVPYMNREGQLKTFLLHIHQFLQKQFISYQI 168
I+ ++ GG ++P C+P+ + AII+PY RE L+ L +H FLQ+Q ++Y I
Sbjct: 23 AEIVENNTHVEPGGRYKPAGCLPRSRTAIIIPYRAREEHLRLLLYRLHPFLQRQQLAYGI 82
Query: 169 FVIEQRHPAEFNRGKLLNIGYIEALKIKPFHCFIFHDVDLMPTNPNNIYACTKQ 222
FVIEQ FNR KLLN+G +EAL+ +P+ CFI HDVDL+P N N+Y C +
Sbjct: 83 FVIEQAGNGPFNRAKLLNVGVLEALRDEPWDCFILHDVDLLPENDENLYTCDPR 136
>gnl|CDD|217196 pfam02709, Glyco_transf_7C, N-terminal domain of
galactosyltransferase. This is the N-terminal domain of
a family of galactosyltransferases from a wide range of
Metazoa with three related galactosyltransferases
activities, all three of which are possessed by one
sequence in some cases. EC:2.4.1.90, N-acetyllactosamine
synthase; EC:2.4.1.38,
Beta-N-acetylglucosaminyl-glycopeptide beta-1,4-
galactosyltransferase; and EC:2.4.1.22 Lactose synthase.
Note that N-acetyllactosamine synthase is a component of
Lactose synthase along with alpha-lactalbumin, in the
absence of alpha-lactalbumin EC:2.4.1.90 is the
catalyzed reaction.
Length = 78
Score = 96.5 bits (241), Expect = 8e-25
Identities = 39/77 (50%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 224 RHMSVAIDTFNYELPYCTIFGGAIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQRLSNY-Y 282
RH+SVA+D FNY+LPY FGG +A + F +VNGFSN ++GWG EDDDL+ RL
Sbjct: 1 RHLSVALDKFNYKLPYKGYFGGVLAFSKEDFLKVNGFSNNFWGWGGEDDDLYARLLLAGL 60
Query: 283 SICRFSKQVSEYVMLNH 299
I R + Y ML H
Sbjct: 61 KIERPKFAIGRYHMLRH 77
>gnl|CDD|220577 pfam10111, Glyco_tranf_2_2, Glycosyltransferase like family 2.
Members of this family of prokaryotic proteins include
putative glucosyltransferase, which are involved in
bacterial capsule biosynthesis.
Length = 278
Score = 40.5 bits (95), Expect = 9e-04
Identities = 16/69 (23%), Positives = 26/69 (37%)
Query: 231 DTFNYELPYCTIFGGAIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQRLSNYYSICRFSKQ 290
D + + + I + + F ++ GF + G G ED +L RL YY K
Sbjct: 154 DAITGKSTFFALASSCILINRDFFLKIGGFDENFRGHGGEDFELLYRLLLYYKKFPPPKD 213
Query: 291 VSEYVMLNH 299
+ Y
Sbjct: 214 LLTYDEYKW 222
>gnl|CDD|133042 cd06420, GT2_Chondriotin_Pol_N, N-terminal domain of Chondroitin
polymerase functions as a GalNAc transferase.
Chondroitin polymerase is a two domain, bi-functional
protein. The N-terminal domain functions as a GalNAc
transferase. The bacterial chondroitin polymerase
catalyzes elongation of the chondroitin chain by
alternatively transferring the GlcUA and GalNAc moiety
from UDP-GlcUA and UDP-GalNAc to the non-reducing ends
of the chondroitin chain. The enzyme consists of
N-terminal and C-terminal domains in which the two
active sites catalyze the addition of GalNAc and GlcUA,
respectively. Chondroitin chains range from 40 to over
100 repeating units of the disaccharide. Sulfated
chondroitins are involved in the regulation of various
biological functions such as central nervous system
development, wound repair, infection, growth factor
signaling, and morphogenesis, in addition to its
conventional structural roles. In Caenorhabditis
elegans, chondroitin is an essential factor for the worm
to undergo cytokinesis and cell division. Chondroitin is
synthesized as proteoglycans, sulfated and secreted to
the cell surface or extracellular matrix.
Length = 182
Score = 36.4 bits (85), Expect = 0.012
Identities = 17/49 (34%), Positives = 22/49 (44%)
Query: 241 TIFGGAIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQRLSNYYSICRFSK 289
I G ++ + VNGF + GWG ED +L RL N R K
Sbjct: 125 GIRGCNMSFWKKDLLAVNGFDEEFTGWGGEDSELVARLLNSGIKFRKLK 173
>gnl|CDD|240360 PTZ00325, PTZ00325, malate dehydrogenase; Provisional.
Length = 321
Score = 30.4 bits (69), Expect = 1.7
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 81 VNTHTPLCSIFEKHSKMFNKNFVFNDTALNILHTRLNINKGGAWEPTDC-IP---QHQVA 136
VN+ P+ + K + +++ +F T L+++ R + + P D +P H
Sbjct: 128 VNSTVPIAAETLKKAGVYDPRKLFGVTTLDVVRARKFVAEALGMNPYDVNVPVVGGHSGV 187
Query: 137 IIVP 140
IVP
Sbjct: 188 TIVP 191
>gnl|CDD|222610 pfam14228, MOR2-PAG1_mid, Cell morphogenesis central region. This
family is the conserved central region of proteins that
are involved in cell morphogenesis.
Length = 1120
Score = 29.2 bits (65), Expect = 4.5
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 354 CSFDLQVPHSALQMINVVIDAAADHLDY---RWRESHDINEPESI 395
S D+Q+ +AL+++ V D DY +S E I
Sbjct: 20 SSIDVQIRRTALELLRCVRALQNDIRDYSHKETGDSKLKAGKEPI 64
>gnl|CDD|227922 COG5635, COG5635, Predicted NTPase (NACHT family) [Signal
transduction mechanisms].
Length = 824
Score = 29.0 bits (65), Expect = 5.2
Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 7/93 (7%)
Query: 269 AEDDDLFQRLSNYYSICRFSKQVS------EYVMLNHAKETEKLERLEKLENGPFRFKTD 322
ED +F L+ + +F KQ+S E + + E L+ G D
Sbjct: 253 PEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQGIAKQLIEAHQELLKTGKLLLLLD 312
Query: 323 GLNTLQNNYT-VLAGEANGCVTQYKDNSSIDSC 354
GL+ L+ L E N + +Y D + +C
Sbjct: 313 GLDELEPKNQRALIREINKFLQEYPDAQVLLTC 345
>gnl|CDD|234628 PRK00093, PRK00093, GTP-binding protein Der; Reviewed.
Length = 435
Score = 28.5 bits (65), Expect = 7.0
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 173 QRHPAEFNRGKLLNIGYIEALKIKPFHCFIFH--DVDLMP 210
+RHP +G+ L I Y + P F+ D +L+P
Sbjct: 364 ERHPPPLVKGRRLKIKYATQVGTNPPT-FVLFVNDPELLP 402
>gnl|CDD|234532 TIGR04283, glyco_like_mftF, transferase 2,
rSAM/selenodomain-associated. This enzyme may transfer
a nucleotide, or it sugar moiety, as part of a
biosynthetic pathway. Other proposed members of the
pathway include another transferase (TIGR04282), a
phosphoesterase, and a radical SAM enzyme (TIGR04167)
whose C-terminal domain (pfam12345) frequently contains
a selenocysteine [Unknown function, Enzymes of unknown
specificity].
Length = 220
Score = 27.9 bits (63), Expect = 7.5
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 254 FRQVNGFSNLYFGWGAEDDDLFQRLSNYYSICRFSKQV 291
F Q+ GF ++ ED +L +RL + V
Sbjct: 147 FEQIGGFPDIPLM---EDIELSRRLRRLGRLAILPAPV 181
>gnl|CDD|133029 cd04186, GT_2_like_c, Subfamily of Glycosyltransferase Family GT2
of unknown function. GT-2 includes diverse families of
glycosyltransferases with a common GT-A type structural
fold, which has two tightly associated beta/alpha/beta
domains that tend to form a continuous central sheet of
at least eight beta-strands. These are enzymes that
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. Glycosyltransferases have been
classified into more than 90 distinct sequence based
families.
Length = 166
Score = 27.5 bits (62), Expect = 9.0
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 254 FRQVNGFSNLYFGWGAEDDDLFQRL 278
F +V GF +F + ED DL R
Sbjct: 124 FEEVGGFDEDFFLYY-EDVDLCLRA 147
>gnl|CDD|179690 PRK03975, tfx, putative transcriptional regulator; Provisional.
Length = 141
Score = 27.2 bits (61), Expect = 9.0
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 357 DLQVPHSALQMINVVIDAAADHLDYR 382
++VP+ ++IN + +AA + + R
Sbjct: 91 GIKVPYDTPELINFIREAAPEAIRGR 116
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.140 0.434
Gapped
Lambda K H
0.267 0.0561 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,794,669
Number of extensions: 2000813
Number of successful extensions: 2364
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2359
Number of HSP's successfully gapped: 29
Length of query: 406
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 307
Effective length of database: 6,546,556
Effective search space: 2009792692
Effective search space used: 2009792692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.3 bits)