RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy5933
         (406 letters)



>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET:
           PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A*
           2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A*
           1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B*
           1nkh_B* 1nqi_B* 1nwg_B* ...
          Length = 287

 Score =  191 bits (486), Expect = 2e-58
 Identities = 97/222 (43%), Positives = 137/222 (61%), Gaps = 6/222 (2%)

Query: 117 NINKGGAWEPTDCIPQHQVAIIVPYMNREGQLKTFLLHIHQFLQKQFISYQIFVIEQRHP 176
           N+  GG + P DC+  H+VAII+P+ NR+  LK +L ++H  LQ+Q + Y I+VI Q   
Sbjct: 49  NVKMGGRYAPRDCVSPHKVAIIIPFRNRQEHLKYWLYYLHPVLQRQQLDYGIYVINQAGD 108

Query: 177 AEFNRGKLLNIGYIEALKIKPFHCFIFHDVDLMPTNPNNIYACTKQPRHMSVAIDTFNYE 236
             FNR KLLN+G+ EALK   + CF+F DVDL+P N +N Y C  QPRH+SVA+D F + 
Sbjct: 109 TIFNRAKLLNVGFQEALKDYDYTCFVFSDVDLIPMNDHNAYRCFSQPRHISVAMDKFGFS 168

Query: 237 LPYCTIFGGAIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQRL-SNYYSICRFSKQVSEYV 295
           LPY   FGG  A+ + QF  +NGF N Y+GWG EDDD+F RL     SI R +  V    
Sbjct: 169 LPYVQYFGGVSALSKQQFLTINGFPNNYWGWGGEDDDIFNRLVFRGMSISRPNAVVGTTR 228

Query: 296 MLNHAKETEK---LERLEKLENGPFRFKTDGLNTLQNNYTVL 334
            + H+++ +     +R +++ +      +DGLN+L   Y VL
Sbjct: 229 HIRHSRDKKNEPNPQRFDRIAHTKETMLSDGLNSL--TYQVL 268


>3lw6_A FI08434P, beta-4-galactosyltransferase 7; protein-Mn-UDP complex,
           glycosyltransferase; HET: UDP; 1.81A {Drosophila
           melanogaster}
          Length = 287

 Score =  181 bits (461), Expect = 8e-55
 Identities = 62/225 (27%), Positives = 105/225 (46%), Gaps = 11/225 (4%)

Query: 117 NINKGGAWEPTDCIPQHQVAIIVPYMNREGQLKTFLLHIHQFLQKQFISYQIFVIEQRHP 176
            +  GG + P D    H++A++VP+ +R  +L  F+ H+  FL++Q +++ IFV+ Q   
Sbjct: 35  KVKLGGRYTPMDGASVHKMALLVPFRDRFEELLQFVPHMTAFLKRQGVAHHIFVLNQVDR 94

Query: 177 AEFNRGKLLNIGYIEALKIKPFHCFIFHDVDLMPTNPNNIYACTKQPRHMSVAIDTFNYE 236
             FNR  L+N+G+  A     +     HDVDL+P N N +Y        + +A    + +
Sbjct: 95  FRFNRASLINVGFQFAS--DVYDYIAMHDVDLLPLNDNLLYEYPSSLGPLHIAGPKLHPK 152

Query: 237 LPYCTIFGGAIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQR-LSNYYSICRFS-KQVSEY 294
             Y    GG + + +  F+Q+NG SN Y+GWG EDD+ F R       + R    +    
Sbjct: 153 YHYDNFVGGILLVRREHFKQMNGMSNQYWGWGLEDDEFFVRIRDAGLQVTRPQNIKTGTN 212

Query: 295 VMLNHAKET-----EKLERLEKLENGPFRFKTDGLNTLQNNYTVL 334
              +H         +  +   + E    R    GL+ +   Y +L
Sbjct: 213 DTFSHIHNRYHRKRDTQKCFNQKEMTRKRDHKTGLDNV--KYKIL 255


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 53.1 bits (127), Expect = 1e-07
 Identities = 60/342 (17%), Positives = 107/342 (31%), Gaps = 108/342 (31%)

Query: 109 LNILHTR-LNINKGGAWEPTDCIPQHQVAIIVP---YMNREGQLK-TFLLHIHQF----- 158
           ++   TR L ++ G            +  ++VP   +     QL+  F   + +      
Sbjct: 1   MDAYSTRPLTLSHGSL----------EHVLLVPTASFFIAS-QLQEQFNKILPEPTEGFA 49

Query: 159 ----------LQKQFISYQIFVIEQRHPAEFNRGKLLNIGYIEA--LKIKPFHCFIFH-- 204
                     L  +F+ Y   ++E     +F++   L +   E   L+    H       
Sbjct: 50  ADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLL 109

Query: 205 -DVDLMPTNPNNI---Y----ACTKQP---RHMSV---AIDTFNYELPYCTIFGGAIAML 250
            + D        +   Y       K+P   +  S    A+   N +L    IFGG     
Sbjct: 110 QENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL--VAIFGG----- 162

Query: 251 QHQFRQVNGFSNLYFGWGAEDDDLFQRLSNYYSICRFSKQVSEYVMLNHAKETEKLERLE 310
           Q       G ++ YF      ++L + L   Y    +   V + +        E L  L 
Sbjct: 163 Q-------GNTDDYF------EEL-RDL---YQT--YHVLVGDLI----KFSAETLSELI 199

Query: 311 KLENGPFRFKTDGLNTLQNNYTVLAGEANGCVTQYKDNSSIDSCSFDLQVPHSAL-QMIN 369
           +      +  T GLN L+     L   +N     Y  +  I SC      P   + Q+ +
Sbjct: 200 RTTLDAEKVFTQGLNILE----WLENPSNTPDKDYLLSIPI-SC------PLIGVIQLAH 248

Query: 370 VVIDAAADHLDYRWRESHDINEPESIVSH------HGQSVYA 405
            V+ A          +      P  + S+      H Q +  
Sbjct: 249 YVVTA----------KLLGFT-PGELRSYLKGATGHSQGLVT 279



 Score = 30.0 bits (67), Expect = 2.0
 Identities = 25/136 (18%), Positives = 40/136 (29%), Gaps = 61/136 (44%)

Query: 72  HLEPIQIKTVNTHTPLCSIFEKH---SKMFN--KNFVF--NDTALNILHTRLNINKGGAW 124
            ++   +   N+H P      K    S + N  KN V      +L  L+  L   K  A 
Sbjct: 348 QVQDY-VNKTNSHLPA----GKQVEIS-LVNGAKNLVVSGPPQSLYGLNLTL--RKAKAP 399

Query: 125 EPTDCIPQHQVAIIVPYMNREGQLKTFLLHIHQFLQKQFISYQIFVIEQRHPAEFNRGKL 184
              D   Q +    +P+  R+     F    ++FL                P        
Sbjct: 400 SGLD---QSR----IPFSERK---LKF---SNRFL----------------P-------- 422

Query: 185 LNIGYIEALKIKPFHC 200
                + +    PFH 
Sbjct: 423 -----VAS----PFHS 429


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 40.6 bits (94), Expect = 9e-04
 Identities = 54/329 (16%), Positives = 91/329 (27%), Gaps = 122/329 (37%)

Query: 3   VNISYLPLHSDYQRKTYYCLHKLRYLVRRKGLLI-VLVLVTLWLLLVRYYNFILTILYCV 61
           +  S   L     RK +  L      V      I  ++L  +W  +++            
Sbjct: 359 IESSLNVLEPAEYRKMFDRL-----SVFPPSAHIPTILLSLIWFDVIKS----------- 402

Query: 62  TFIQVDNIENHLEPIQIKTVNTHTPLCSIFEKHSKMFNKNFVFNDTALNI---------L 112
               V  + N L               S+ EK  K            L +         L
Sbjct: 403 ---DVMVVVNKLHKY------------SLVEKQPKEST--ISIPSIYLELKVKLENEYAL 445

Query: 113 HTRL----NINKGGAWEPTDCIPQHQVAIIVPYMNREGQLKTFLLHIHQFLQKQFISYQI 168
           H  +    NI K   ++  D IP +    +  Y              +       I + +
Sbjct: 446 HRSIVDHYNIPK--TFDSDDLIPPY----LDQY-------------FYSH-----IGHHL 481

Query: 169 FVIEQRHPAEFNRGKLLNIGYIEALKIKPFHCFIFHDVDLMPTNPNNIYACTKQPRHMSV 228
             IE        R   L+  ++E  KI                            RH S 
Sbjct: 482 KNIEHPERMTLFRMVFLDFRFLEQ-KI----------------------------RHDST 512

Query: 229 AIDTFNYELPYCTIFGGAIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQRLSNYYSICRFS 288
           A              G  +  LQ Q +        Y  +  ++D  ++RL N  +I  F 
Sbjct: 513 A----------WNASGSILNTLQ-QLK-------FYKPYICDNDPKYERLVN--AILDFL 552

Query: 289 KQVSEYVMLNHAKETEKLERLEKLENGPF 317
            ++ E ++   +K T+ L      E+   
Sbjct: 553 PKIEENLI--CSKYTDLLRIALMAEDEAI 579



 Score = 36.8 bits (84), Expect = 0.014
 Identities = 58/441 (13%), Positives = 111/441 (25%), Gaps = 166/441 (37%)

Query: 39  VLVTLWLLLVR----YYNFILTIL---YCVTFIQVDNIENHLEPIQIKTVNTHTPLCSIF 91
            L   W LL +       F+  +L   Y   F+        + PI+ +            
Sbjct: 64  TLRLFWTLLSKQEEMVQKFVEEVLRINY--KFL--------MSPIKTEQRQPSMMTRMYI 113

Query: 92  EKHSKMFNKNFVFNDTALNILHTRLNINK----------------GGA---W-------- 124
           E+  +++N N VF    ++ L   L + +                 G+   W        
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173

Query: 125 EPTDCIPQHQVA-IIVPYMNREGQLKTFLLHIHQFLQKQFISYQIFVIEQRHPAEFNRGK 183
               C    ++  + +   N    +   L  +   +   + S        +      + +
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233

Query: 184 LLNI----GYIEALKI----------KPF--HCFIFHDVDLMPTNPNNI--YACTKQPRH 225
           L  +     Y   L +            F   C I     L+ T    +  +       H
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI-----LLTTRFKQVTDFLSAATTTH 288

Query: 226 MSV------------------AIDTFNYELPY--CTIFGGAIAMLQHQFRQVNGFSNLYF 265
           +S+                   +D    +LP    T     ++++               
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII--------------- 333

Query: 266 GWGAEDDDLFQRLSNYYSICRFSKQVSEYVMLNHAKETEKLER-LEKLENGPFRFKTDGL 324
                  D      N+       K V      N  K T  +E  L  LE  P        
Sbjct: 334 --AESIRDGLATWDNW-------KHV------NCDKLTTIIESSLNVLE--P-------- 368

Query: 325 NTLQNNYTVLAGEANGCVTQYKDNSSIDSCSF--DLQVPHSALQMINVVIDAAADHLDYR 382
              +  +  L+               +    F     +P   L +I              
Sbjct: 369 AEYRKMFDRLS---------------V----FPPSAHIPTILLSLI-------------- 395

Query: 383 WRESHDINEPESIVSH-HGQS 402
           W +    ++   +V+  H  S
Sbjct: 396 WFDV-IKSDVMVVVNKLHKYS 415



 Score = 33.3 bits (75), Expect = 0.17
 Identities = 56/463 (12%), Positives = 122/463 (26%), Gaps = 149/463 (32%)

Query: 1   MRVNISYL-PLHSDYQRKTYY------CLHKLRYLVR--RKGLLIVL---------VLVT 42
            R+ I     L++D Q    Y         KLR  +   R    +++          +  
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA- 167

Query: 43  LWLLLVRYYNFILTI---LYCVTFIQVDNIENHLEPIQIKTVNTHTPLCSIFEK-----H 94
             L +   Y     +   ++ +     ++ E  LE +Q         L    +       
Sbjct: 168 --LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ--------KLLYQIDPNWTSRS 217

Query: 95  SKMFNKNFVFNDT---------------ALNILHTRLNINKGGAWEPTD--CIPQHQVAI 137
               N     +                  L +L    N+    AW   +  C    ++ +
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL---NVQNAKAWNAFNLSC----KILL 270

Query: 138 IVPYMNREGQLKTFLLHIHQFLQKQFISYQIFVIEQR---HPAE----FNRGKLLNIGY- 189
                 R  Q+  FL               I +        P E        K L+    
Sbjct: 271 T----TRFKQVTDFLSAATT--------THISLDHHSMTLTPDEVKSLL--LKYLDCRPQ 316

Query: 190 ---IEALKIKPFHCFIFHDVDLMPTNPNNI-----YACTKQPRHMSVAIDTFN------- 234
               E L   P    I    + +              C K    +  +++          
Sbjct: 317 DLPREVLTTNPRRLSII--AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374

Query: 235 YELPYCTIF-------GGAIAMLQHQFRQVNGFSNLYFGWGA----EDDDLFQRLSNYYS 283
           ++    ++F          ++++                W      +   +  +L  Y  
Sbjct: 375 FD--RLSVFPPSAHIPTILLSLI----------------WFDVIKSDVMVVVNKLHKYSL 416

Query: 284 ICRFSKQVSEYVMLNHAKETEKLERLEKLENGPFRFKTDGLNTLQNNYTVLAG-EANGCV 342
           + +  K+ +  +   + +   KLE    L             ++ ++Y +    +++  +
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHR-----------SIVDHYNIPKTFDSDDLI 465

Query: 343 TQYKDNSSIDSCSFDLQVPH--SALQMINVVIDAAADHLDYRW 383
             Y D       S    + H    ++    +       LD+R+
Sbjct: 466 PPYLDQYF---YSH---IGHHLKNIEHPERMTLFRMVFLDFRF 502


>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA
           UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
          Length = 625

 Score = 36.1 bits (83), Expect = 0.020
 Identities = 14/72 (19%), Positives = 23/72 (31%)

Query: 223 PRHMSVAIDTFNYELPYCTIFGGAIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQRLSNYY 282
             H     +      P+    GG +A  +    +   F   +  WG ED++   RL    
Sbjct: 257 IEHFKNTDNLRLCNTPFRFFSGGNVAFAKKWLFRAGWFDEEFTHWGGEDNEFGYRLYREG 316

Query: 283 SICRFSKQVSEY 294
              R  +    Y
Sbjct: 317 CYFRSVEGAMAY 328



 Score = 31.1 bits (70), Expect = 0.78
 Identities = 12/95 (12%), Positives = 24/95 (25%), Gaps = 9/95 (9%)

Query: 190 IEALKIKPFHCFIFHDVDLMPTNPNNIYACTKQPRHMSVAIDTFNYELPYCTIFGGAIAM 249
           ++  +       ++     +    N I      P            +L    I       
Sbjct: 476 LDEFRKDLSLACVYTTNRNIDREGNLISNGYNWP-------IYSREKLTSAMICHHFRMF 528

Query: 250 LQHQFRQVNGFSNLYFGWGAEDDDLFQRLSNYYSI 284
               +    GF+       A D D++ +LS     
Sbjct: 529 TARAWNLTEGFNESISN--AVDYDMYLKLSEVGPF 561


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 31.8 bits (71), Expect = 0.16
 Identities = 13/70 (18%), Positives = 20/70 (28%), Gaps = 40/70 (57%)

Query: 304 EKLERLEKLENGPFRFKTDGLNTLQNNYTVLAGEANGCVTQYKDNSSIDSCSFDLQVPHS 363
           EK + L+KL+      K                        Y D+S+          P  
Sbjct: 18  EK-QALKKLQA---SLKL-----------------------YADDSA----------P-- 38

Query: 364 ALQMINVVID 373
           AL  I   ++
Sbjct: 39  ALA-IKATME 47


>1ivy_A Human protective protein; carboxypeptidase, serine
           carboxypeptidase, protective protei glycoprotein,
           zymogen; HET: NAG NDG; 2.20A {Homo sapiens} SCOP:
           c.69.1.5
          Length = 452

 Score = 31.3 bits (71), Expect = 0.63
 Identities = 8/20 (40%), Positives = 12/20 (60%)

Query: 313 ENGPFRFKTDGLNTLQNNYT 332
           E+GPF  + DG+    N Y+
Sbjct: 69  EHGPFLVQPDGVTLEYNPYS 88


>1whs_A Serine carboxypeptidase II; HET: NAG FUC; 2.00A {Triticum aestivum}
           SCOP: c.69.1.5 PDB: 1bcs_A* 1bcr_A* 1wht_A* 3sc2_A*
          Length = 255

 Score = 30.7 bits (70), Expect = 0.75
 Identities = 8/20 (40%), Positives = 9/20 (45%)

Query: 313 ENGPFRFKTDGLNTLQNNYT 332
           E G FR K  G   + N Y 
Sbjct: 70  ELGAFRVKPRGAGLVLNEYR 89


>1gxs_A P-(S)-hydroxymandelonitrIle lyase chain A; inhibitor complex,
           cyanogenesis mechanism; HET: NAG FUL DKA; 2.3A {Sorghum
           bicolor} SCOP: c.69.1.5
          Length = 270

 Score = 30.4 bits (69), Expect = 1.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)

Query: 313 ENGPFRFKTDGLNTLQNNYT 332
           E G FR  T+G + L N Y 
Sbjct: 76  ELGAFRVHTNGESLLLNEYA 95


>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding,
           aminoacyl-tRNA synthetase, LIG nucleotide-binding,
           protein biosynthesis; 2.80A {Trypanosoma brucei}
          Length = 395

 Score = 29.6 bits (66), Expect = 1.8
 Identities = 15/88 (17%), Positives = 25/88 (28%), Gaps = 16/88 (18%)

Query: 153 LHIH--------QFLQKQFISYQIFVIEQRH--------PAEFNRGKLLNIGYIEALKIK 196
           +H+         ++LQ  F    +  +              +       NI  I A+   
Sbjct: 92  MHMGHLIPFMFTKWLQDSFRVPLVIQMTDDEKFYFRNIPMEQVEAMTTENIKDIIAMGFD 151

Query: 197 PFHCFIFHDVDLMPTNPNNIYACTKQPR 224
           P   FIF D D M      +    +   
Sbjct: 152 PELTFIFRDFDYMGCMYRTVAKIERAFT 179


>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil,
           rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens}
           PDB: 2d7r_A*
          Length = 570

 Score = 29.4 bits (65), Expect = 2.7
 Identities = 8/35 (22%), Positives = 16/35 (45%)

Query: 240 CTIFGGAIAMLQHQFRQVNGFSNLYFGWGAEDDDL 274
             + GG  A+ +  F ++ G+      WG E  ++
Sbjct: 282 PVMAGGLFAVDRKWFWELGGYDPGLEIWGGEQYEI 316


>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1;
           glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus
           musculus} SCOP: b.42.2.1 c.68.1.17
          Length = 472

 Score = 29.0 bits (64), Expect = 3.3
 Identities = 9/52 (17%), Positives = 21/52 (40%)

Query: 223 PRHMSVAIDTFNYELPYCTIFGGAIAMLQHQFRQVNGFSNLYFGWGAEDDDL 274
            R M          +   T+ GG  ++ +  F+++  +      WG E+ ++
Sbjct: 185 QREMDRRKGDRTLPVRTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEI 236


>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2,
           protein-UDP; ppgalnact, mucin, glycosyltransferase; HET:
           UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
          Length = 501

 Score = 28.6 bits (63), Expect = 4.8
 Identities = 9/52 (17%), Positives = 18/52 (34%)

Query: 223 PRHMSVAIDTFNYELPYCTIFGGAIAMLQHQFRQVNGFSNLYFGWGAEDDDL 274
           P             +    I GG   M +  F ++  +  +   WG E+ ++
Sbjct: 217 PEQRRSRQGNPVAPIKTPMIAGGLFVMDKFYFEELGKYDMMMDVWGGENLEI 268


>1cpy_A Serine carboxypeptidase; hydrolase (carboxypeptidase); HET: NAG;
           2.60A {Saccharomyces cerevisiae} SCOP: c.69.1.5 PDB:
           1wpx_A* 1ysc_A*
          Length = 421

 Score = 28.0 bits (63), Expect = 6.6
 Identities = 5/20 (25%), Positives = 7/20 (35%), Gaps = 1/20 (5%)

Query: 313 ENGPFRFKTDGLNTLQNNYT 332
             GP     D    + N Y+
Sbjct: 65  ALGPSSIGPDL-KPIGNPYS 83


>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus
           abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A*
           1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
          Length = 410

 Score = 27.6 bits (62), Expect = 9.3
 Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 174 RHPAEFNRGKLLNIGYIEALKIKPFHCFIFHDVDLMPTNPNNIYACTKQPRHMS 227
            H  E  RG  + IG+ +A   +  +C  +    + P   +     T+  R +S
Sbjct: 37  THSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHE----TEFVRRVS 86


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.325    0.140    0.434 

Gapped
Lambda     K      H
   0.267   0.0488    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,246,358
Number of extensions: 360245
Number of successful extensions: 757
Number of sequences better than 10.0: 1
Number of HSP's gapped: 745
Number of HSP's successfully gapped: 22
Length of query: 406
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 310
Effective length of database: 4,021,377
Effective search space: 1246626870
Effective search space used: 1246626870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.7 bits)