RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5933
         (406 letters)



>d1pzta_ c.68.1.2 (A:) beta 1,4 galactosyltransferase (b4GalT1) {Cow
           (Bos taurus) [TaxId: 9913]}
          Length = 271

 Score =  211 bits (539), Expect = 7e-67
 Identities = 94/233 (40%), Positives = 141/233 (60%), Gaps = 6/233 (2%)

Query: 117 NINKGGAWEPTDCIPQHQVAIIVPYMNREGQLKTFLLHIHQFLQKQFISYQIFVIEQRHP 176
            +  GG + P DCI  H+VAII+P+ NR+  LK +L ++H  LQ+Q + Y I+VI Q   
Sbjct: 33  KVKLGGRYTPMDCISPHKVAIIIPFRNRQEHLKYWLYYLHPILQRQQLDYGIYVINQAGE 92

Query: 177 AEFNRGKLLNIGYIEALKIKPFHCFIFHDVDLMPTNPNNIYACTKQPRHMSVAIDTFNYE 236
           + FNR KLLN+G+ EALK   ++CF+F DVDL+P N +N Y C  QPRH+SVA+D F + 
Sbjct: 93  SMFNRAKLLNVGFKEALKDYDYNCFVFSDVDLIPMNDHNTYRCFSQPRHISVAMDKFGFS 152

Query: 237 LPYCTIFGGAIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQR-LSNYYSICRFSKQVSEYV 295
           LPY   FGG  A+ + QF  +NGF N Y+G G EDDD++ R      S+ R +  + +  
Sbjct: 153 LPYVQYFGGVSALSKQQFLSINGFPNNYWGAGGEDDDIYNRLAFRGMSVSRPNAVIGKTR 212

Query: 296 MLNHAKETEK---LERLEKLENGPFRFKTDGLNTLQNNYTVLAGEANGCVTQY 345
           M+ H+++ +     +R +++ +      +DGLN+L   Y VL  +     T+ 
Sbjct: 213 MIRHSRDKKNEPNPQRFDRIAHTKETMLSDGLNSL--TYMVLEVQRYPLYTKI 263


>d1xhba2 c.68.1.17 (A:95-422) Polypeptide
           N-acetylgalactosaminyltransferase 1, N-terminal domain
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 328

 Score = 34.9 bits (79), Expect = 0.015
 Identities = 8/45 (17%), Positives = 20/45 (44%)

Query: 233 FNYELPYCTIFGGAIAMLQHQFRQVNGFSNLYFGWGAEDDDLFQR 277
               +   T+ GG  ++ +  F+++  +      WG E+ ++  R
Sbjct: 188 RTLPVRTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEISFR 232


>g1wht.1 c.69.1.5 (A:,B:) Serine carboxypeptidase II {Wheat
           (Triticum vulgare) [TaxId: 4565]}
          Length = 409

 Score = 28.6 bits (63), Expect = 1.4
 Identities = 15/63 (23%), Positives = 21/63 (33%), Gaps = 7/63 (11%)

Query: 313 ENGPFRFKTDGLNTLQNNYT-------VLAGEANGCVTQYKDNSSIDSCSFDLQVPHSAL 365
           E G FR K  G   + N Y        +      G    Y + SS    S D +  H + 
Sbjct: 71  ELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNRTAHDSY 130

Query: 366 QMI 368
             +
Sbjct: 131 AFL 133


>d1ivya_ c.69.1.5 (A:) Human 'protective protein', HPP {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 452

 Score = 28.3 bits (62), Expect = 1.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)

Query: 313 ENGPFRFKTDGLNTLQNNYT 332
           E+GPF  + DG+    N Y+
Sbjct: 69  EHGPFLVQPDGVTLEYNPYS 88


>g1gxs.1 c.69.1.5 (A:,B:) Hydroxynitrile lyase {Sorghum (Sorghum
           bicolor) [TaxId: 4558]}
          Length = 425

 Score = 26.7 bits (58), Expect = 5.8
 Identities = 9/20 (45%), Positives = 11/20 (55%)

Query: 313 ENGPFRFKTDGLNTLQNNYT 332
           E G FR  T+G + L N Y 
Sbjct: 73  ELGAFRVHTNGESLLLNEYA 92


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.140    0.434 

Gapped
Lambda     K      H
   0.267   0.0504    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,548,164
Number of extensions: 71898
Number of successful extensions: 214
Number of sequences better than 10.0: 1
Number of HSP's gapped: 210
Number of HSP's successfully gapped: 17
Length of query: 406
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 319
Effective length of database: 1,213,086
Effective search space: 386974434
Effective search space used: 386974434
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.1 bits)