Query psy5937
Match_columns 201
No_of_seqs 192 out of 527
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 22:18:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5937.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5937hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03366 YEATS: YEATS family; 100.0 5.7E-32 1.2E-36 199.3 9.1 81 28-108 1-81 (84)
2 KOG3149|consensus 100.0 1.8E-29 3.8E-34 218.7 11.0 106 3-108 11-116 (249)
3 PF03366 YEATS: YEATS family; 100.0 1.6E-28 3.6E-33 180.8 6.6 74 109-182 1-76 (84)
4 COG5033 TFG3 Transcription ini 99.9 1.1E-26 2.4E-31 195.1 8.0 100 10-109 15-116 (225)
5 KOG3149|consensus 99.9 8.2E-23 1.8E-27 177.1 8.4 92 105-196 32-130 (249)
6 COG5033 TFG3 Transcription ini 99.9 7.8E-23 1.7E-27 171.9 7.1 76 107-182 33-108 (225)
7 PF09154 DUF1939: Domain of un 60.9 5.3 0.00012 27.2 1.4 14 71-84 37-50 (57)
8 PLN00172 ubiquitin conjugating 43.0 1E+02 0.0022 24.5 6.4 46 26-71 28-75 (147)
9 smart00212 UBCc Ubiquitin-conj 38.9 1.5E+02 0.0032 23.0 6.7 48 26-73 26-75 (145)
10 cd03771 MATH_Meprin Meprin fam 23.0 3.5E+02 0.0076 22.1 6.5 37 63-104 22-60 (167)
No 1
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=99.97 E-value=5.7e-32 Score=199.26 Aligned_cols=81 Identities=38% Similarity=0.699 Sum_probs=67.9
Q ss_pred eeeEEEEEEcCCCCCcccceeeEEEEECCCCCCCeEEeeCCCEEEeeceeeeeEcEEEEEEccCCCCCceeEEEeecCCC
Q psy5937 28 THDWEVFVRGVDNADIHNFIDKVVFHLHETFPKPKRILKEPPYVVKESGYAGFTLPIEVYGDLIVPKSKRTTYIFIKPEG 107 (201)
Q Consensus 28 th~W~v~vr~~~~~~~~~~v~kV~f~LH~sf~~p~r~v~~pPF~v~e~GwGeF~i~i~i~f~~~~~k~~r~i~h~L~~~~ 107 (201)
||+|+||||+.+++|++.+|+||+|+|||||+||+|++++|||+|+|.|||||+|.|+|+|++.+..++.++.|.|+++.
T Consensus 1 th~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~p~r~v~~pPFevte~GWGeF~i~I~i~f~~~~~~~~~~~~h~L~l~~ 80 (84)
T PF03366_consen 1 THKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPNPVRVVTKPPFEVTETGWGEFEIPIKIHFKDPSNEKPVTIQHDLKLHQ 80 (84)
T ss_dssp -EEEEEEEEECCCT--TTTEEEEEEES-TTSSS-EEECSSTTEEEEEEESS--EEEEEEECCCGGCTCEEEEEEE--SSS
T ss_pred CcEEEEEEEeCCCCCccceEEEEEEECCCCCCCCceEecCCCCEEEEeEeccEEEEEEEEEeCCCCCCcEEEEEEEEcCC
Confidence 79999999999999999999999999999999999999999999999999999999999999976678899999999854
Q ss_pred C
Q psy5937 108 F 108 (201)
Q Consensus 108 ~ 108 (201)
.
T Consensus 81 ~ 81 (84)
T PF03366_consen 81 D 81 (84)
T ss_dssp C
T ss_pred C
Confidence 3
No 2
>KOG3149|consensus
Probab=99.96 E-value=1.8e-29 Score=218.67 Aligned_cols=106 Identities=39% Similarity=0.774 Sum_probs=100.0
Q ss_pred eeEEEEEEEEceeEEecCCCCCCCCeeeEEEEEEcCCCCCcccceeeEEEEECCCCCCCeEEeeCCCEEEeeceeeeeEc
Q psy5937 3 YSNVKITLEIGHEASVRNKRTPEGFTHDWEVFVRGVDNADIHNFIDKVVFHLHETFPKPKRILKEPPYVVKESGYAGFTL 82 (201)
Q Consensus 3 ~~~v~~~i~iG~~~~~~~~~~~~~~th~W~v~vr~~~~~~~~~~v~kV~f~LH~sf~~p~r~v~~pPF~v~e~GwGeF~i 82 (201)
.+++.+.|++||+|.+++++.++++||.|+||||+.+++|++.||+||+|+||+||+||+|++++|||+|+|+|||+|+|
T Consensus 11 ~~~~~~~iv~G~~a~~~~~~~~~~~th~w~v~v~~~~~ed~~~~V~KV~f~LH~sf~~P~Rvv~~pPf~i~EtGwgeF~i 90 (249)
T KOG3149|consen 11 ECTISVPIVPGNRAAILGKRLPDGFTHIWEVYVRGPGKEDISAFVDKVVFKLHESFPNPRRVVESPPFEITETGWGEFEI 90 (249)
T ss_pred eeeEEeeeecCccccccCCCCCcccceeeEEEecCcCccccceeeeeeeeecccccccccccccCCCceEEeeccccceE
Confidence 47799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEccCCCCCceeEEEeecCCCC
Q psy5937 83 PIEVYGDLIVPKSKRTTYIFIKPEGF 108 (201)
Q Consensus 83 ~i~i~f~~~~~k~~r~i~h~L~~~~~ 108 (201)
.|+|+|.+..+++++.++|.|++...
T Consensus 91 ~i~i~f~d~~~~~~v~~~~~l~l~~~ 116 (249)
T KOG3149|consen 91 QIEIFFTDDANEKKVTLYHDLKLHSY 116 (249)
T ss_pred EEEEEeccCCCCceeeeeeeEEeecc
Confidence 99999999988889999998886433
No 3
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=99.95 E-value=1.6e-28 Score=180.84 Aligned_cols=74 Identities=43% Similarity=0.951 Sum_probs=61.2
Q ss_pred cccceEEEeccCCccccceeeeEEEEeccccCCCcccccCCCeEEeecCCCceEEeEEEEEccC--CcCeEEEecc
Q psy5937 109 THDWEVFVRGVDNADIHNFIDKVVFHLHETFPKPKRILKEPPYVVKESGYAGFTLPIEVYLKNN--NEPRKIRRKH 182 (201)
Q Consensus 109 tH~W~~~V~~~~~~~vs~fidkVvF~LH~tF~~p~r~~~~pPf~v~e~GWGeF~i~I~i~f~~~--~~~~~i~~~~ 182 (201)
+|+|++||++++++++++++++|+|+|||||+||+|++++|||+|+|+|||||+|+|+|+|++. .++.+|.++.
T Consensus 1 th~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~p~r~v~~pPFevte~GWGeF~i~I~i~f~~~~~~~~~~~~h~L 76 (84)
T PF03366_consen 1 THKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPNPVRVVTKPPFEVTETGWGEFEIPIKIHFKDPSNEKPVTIQHDL 76 (84)
T ss_dssp -EEEEEEEEECCCT--TTTEEEEEEES-TTSSS-EEECSSTTEEEEEEESS--EEEEEEECCCGGCTCEEEEEEE-
T ss_pred CcEEEEEEEeCCCCCccceEEEEEEECCCCCCCCceEecCCCCEEEEeEeccEEEEEEEEEeCCCCCCcEEEEEEE
Confidence 6999999999999999999999999999999999999999999999999999999999999995 4555665553
No 4
>COG5033 TFG3 Transcription initiation factor IIF, auxiliary subunit [Transcription]
Probab=99.93 E-value=1.1e-26 Score=195.07 Aligned_cols=100 Identities=31% Similarity=0.574 Sum_probs=88.1
Q ss_pred EEEceeEEecCCC--CCCCCeeeEEEEEEcCCCCCcccceeeEEEEECCCCCCCeEEeeCCCEEEeeceeeeeEcEEEEE
Q psy5937 10 LEIGHEASVRNKR--TPEGFTHDWEVFVRGVDNADIHNFIDKVVFHLHETFPKPKRILKEPPYVVKESGYAGFTLPIEVY 87 (201)
Q Consensus 10 i~iG~~~~~~~~~--~~~~~th~W~v~vr~~~~~~~~~~v~kV~f~LH~sf~~p~r~v~~pPF~v~e~GwGeF~i~i~i~ 87 (201)
.+|+++|..+... .+-.++|-|.+|||++.+|+++.||+||+|+|||||+||+|++.+|||+|.|+|||||+|.|+|+
T Consensus 15 ~Iipgea~~~~~e~~~P~r~th~w~v~v~~~g~E~~~~iv~KVifkLH~Tf~NP~Rti~~pPFeI~EtGWGEF~i~I~if 94 (225)
T COG5033 15 VIIPGEAKPLGNEERFPVRHTHIWLVFVRAPGKEDIATIVKKVIFKLHPTFSNPTRTIESPPFEIKETGWGEFDIQIKIF 94 (225)
T ss_pred eeccCccccCCccccCCchhhEEEEEEEeCCCCcchhhhhheeeEEeccccCCCcccccCCCcEEEecccccceEEEEEE
Confidence 3444488887543 56678999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCCCceeEEEeecCCCCc
Q psy5937 88 GDLIVPKSKRTTYIFIKPEGFT 109 (201)
Q Consensus 88 f~~~~~k~~r~i~h~L~~~~~t 109 (201)
|.++.++.....||.+.++.+.
T Consensus 95 f~~~age~~~~fyl~f~~~~Y~ 116 (225)
T COG5033 95 FAEKAGEKTIHFYLHFGDEPYA 116 (225)
T ss_pred EecCCCceEeehhhhccccccc
Confidence 9999888888888877766554
No 5
>KOG3149|consensus
Probab=99.88 E-value=8.2e-23 Score=177.13 Aligned_cols=92 Identities=42% Similarity=0.931 Sum_probs=83.6
Q ss_pred CCCCcccceEEEeccCCccccceeeeEEEEeccccCCCcccccCCCeEEeecCCCceEEeEEEEEccCCcCeEEEecc--
Q psy5937 105 PEGFTHDWEVFVRGVDNADIHNFIDKVVFHLHETFPKPKRILKEPPYVVKESGYAGFTLPIEVYLKNNNEPRKIRRKH-- 182 (201)
Q Consensus 105 ~~~~tH~W~~~V~~~~~~~vs~fidkVvF~LH~tF~~p~r~~~~pPf~v~e~GWGeF~i~I~i~f~~~~~~~~i~~~~-- 182 (201)
+..++|.|++|+++..+++++.|+++|+|+||+||++|+|++.+|||+++|+|||||+|+|+|+|.++.+++++.+.|
T Consensus 32 ~~~~th~w~v~v~~~~~ed~~~~V~KV~f~LH~sf~~P~Rvv~~pPf~i~EtGwgeF~i~i~i~f~d~~~~~~v~~~~~l 111 (249)
T KOG3149|consen 32 PDGFTHIWEVYVRGPGKEDISAFVDKVVFKLHESFPNPRRVVESPPFEITETGWGEFEIQIEIFFTDDANEKKVTLYHDL 111 (249)
T ss_pred CcccceeeEEEecCcCccccceeeeeeeeecccccccccccccCCCceEEeeccccceEEEEEEeccCCCCceeeeeeeE
Confidence 477899999999999999999999999999999999999999999999999999999999999999999988888764
Q ss_pred -----CCCCCcccccccce
Q psy5937 183 -----TTPPSRHLSSRDLR 196 (201)
Q Consensus 183 -----~~~~~~~~~~~~~~ 196 (201)
+.|+++|+.|.+.+
T Consensus 112 ~l~~~~~p~~~~~~~~~~~ 130 (249)
T KOG3149|consen 112 KLHSYGAPPVPHEESTKKT 130 (249)
T ss_pred EeeccCCCCccchhhhccc
Confidence 34578888776643
No 6
>COG5033 TFG3 Transcription initiation factor IIF, auxiliary subunit [Transcription]
Probab=99.88 E-value=7.8e-23 Score=171.87 Aligned_cols=76 Identities=34% Similarity=0.722 Sum_probs=73.0
Q ss_pred CCcccceEEEeccCCccccceeeeEEEEeccccCCCcccccCCCeEEeecCCCceEEeEEEEEccCCcCeEEEecc
Q psy5937 107 GFTHDWEVFVRGVDNADIHNFIDKVVFHLHETFPKPKRILKEPPYVVKESGYAGFTLPIEVYLKNNNEPRKIRRKH 182 (201)
Q Consensus 107 ~~tH~W~~~V~~~~~~~vs~fidkVvF~LH~tF~~p~r~~~~pPf~v~e~GWGeF~i~I~i~f~~~~~~~~i~~~~ 182 (201)
..+|-|.++|++..++++++|++||+|+|||||+||+|.+.+|||+|.|+|||||+|.|+|||.++.++++|.+++
T Consensus 33 r~th~w~v~v~~~g~E~~~~iv~KVifkLH~Tf~NP~Rti~~pPFeI~EtGWGEF~i~I~iff~~~age~~~~fyl 108 (225)
T COG5033 33 RHTHIWLVFVRAPGKEDIATIVKKVIFKLHPTFSNPTRTIESPPFEIKETGWGEFDIQIKIFFAEKAGEKTIHFYL 108 (225)
T ss_pred hhhEEEEEEEeCCCCcchhhhhheeeEEeccccCCCcccccCCCcEEEecccccceEEEEEEEecCCCceEeehhh
Confidence 4578999999999999999999999999999999999999999999999999999999999999999999999874
No 7
>PF09154 DUF1939: Domain of unknown function (DUF1939); InterPro: IPR015237 This entry represents a C-terminal domain associated with prokaryotic alpha-amylases. It adopts a secondary structure consisting of an eight-stranded antiparallel beta-sheet containing a Greek key motif. Its exact function has not, as yet, been determined []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1MXD_A 1MWO_A 1MXG_A 1W9X_A 2DIE_A 1VJS_A 1BPL_B 1BLI_A 1OB0_A 1E3Z_A ....
Probab=60.93 E-value=5.3 Score=27.23 Aligned_cols=14 Identities=29% Similarity=0.762 Sum_probs=10.1
Q ss_pred EEeeceeeeeEcEE
Q psy5937 71 VVKESGYAGFTLPI 84 (201)
Q Consensus 71 ~v~e~GwGeF~i~i 84 (201)
.+.|.|||+|.++-
T Consensus 37 tid~dG~~~f~v~~ 50 (57)
T PF09154_consen 37 TIDEDGWGEFPVPP 50 (57)
T ss_dssp EE-TTSEEEEEE-T
T ss_pred EECCCeEEEEEECC
Confidence 56799999999863
No 8
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=42.96 E-value=1e+02 Score=24.51 Aligned_cols=46 Identities=11% Similarity=0.140 Sum_probs=33.3
Q ss_pred CCeeeEEEEEEcCCCCCcccceeeEEEEECCCC--CCCeEEeeCCCEE
Q psy5937 26 GFTHDWEVFVRGVDNADIHNFIDKVVFHLHETF--PKPKRILKEPPYV 71 (201)
Q Consensus 26 ~~th~W~v~vr~~~~~~~~~~v~kV~f~LH~sf--~~p~r~v~~pPF~ 71 (201)
+.-.+|.+.+.|+.+..-..-+=++.+.+-+.| ..|...+..+.|.
T Consensus 28 ~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H 75 (147)
T PLN00172 28 ENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYH 75 (147)
T ss_pred CChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCccc
Confidence 456999999999877555433447788888888 4477777776665
No 9
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=38.92 E-value=1.5e+02 Score=23.01 Aligned_cols=48 Identities=17% Similarity=0.205 Sum_probs=32.9
Q ss_pred CCeeeEEEEEEcCCCCCcccceeeEEEEECCCCCC--CeEEeeCCCEEEe
Q psy5937 26 GFTHDWEVFVRGVDNADIHNFIDKVVFHLHETFPK--PKRILKEPPYVVK 73 (201)
Q Consensus 26 ~~th~W~v~vr~~~~~~~~~~v~kV~f~LH~sf~~--p~r~v~~pPF~v~ 73 (201)
+....|.+.+.|+++..-..-+=++++.+.+.|+. |...+..++|.-.
T Consensus 26 ~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~ 75 (145)
T smart00212 26 DNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPN 75 (145)
T ss_pred CChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEee
Confidence 35689999999876544332222788889999954 7777777666543
No 10
>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces. They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co
Probab=23.02 E-value=3.5e+02 Score=22.14 Aligned_cols=37 Identities=11% Similarity=0.272 Sum_probs=24.0
Q ss_pred EEeeCCCE-EEeeceeeeeEcEEEEEEccCCCC-CceeEEEeec
Q psy5937 63 RILKEPPY-VVKESGYAGFTLPIEVYGDLIVPK-SKRTTYIFIK 104 (201)
Q Consensus 63 r~v~~pPF-~v~e~GwGeF~i~i~i~f~~~~~k-~~r~i~h~L~ 104 (201)
..+..||| .+ |++...|.+|......+ .-..+|+.|.
T Consensus 22 ~~i~S~~Fysv-----gGy~w~I~~YPnG~~~~~~~lSlyL~L~ 60 (167)
T cd03771 22 TKIYSPRFYSP-----EGYAFQVGLYPNGTESYPGYTGLYFHLC 60 (167)
T ss_pred CEEECCCCCcc-----CCeEEEEEEEeCCCCCCCCcceEEEEEe
Confidence 35678997 64 78888999998644321 1255665554
Done!