Query psy5937
Match_columns 201
No_of_seqs 192 out of 527
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 22:19:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5937.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5937hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rls_A YAF9, protein AF-9 homo 100.0 1.4E-37 4.9E-42 254.7 15.1 137 4-146 4-154 (175)
2 3qrl_A Transcription initiatio 100.0 1E-32 3.6E-37 218.5 10.7 128 5-158 7-139 (140)
3 3qrl_A Transcription initiatio 99.9 1.9E-26 6.6E-31 182.6 7.5 77 106-182 28-108 (140)
4 3rls_A YAF9, protein AF-9 homo 99.9 2.3E-26 7.7E-31 188.4 7.0 78 105-182 28-105 (175)
5 3h8k_A Ubiquitin-conjugating e 33.1 73 0.0025 24.3 5.3 45 27-71 32-78 (164)
6 3rcz_B SUMO-conjugating enzyme 31.6 1.4E+02 0.0049 22.8 6.8 44 27-70 43-88 (163)
7 2gjd_A Ubiquitin-conjugating e 30.3 1.5E+02 0.0051 22.4 6.7 44 27-70 37-82 (157)
8 2fo3_A Ubiquitin-conjugating e 29.8 1.1E+02 0.0039 22.2 5.7 43 26-68 33-77 (125)
9 2h2y_A Ubiquitin-conjugating e 29.8 1.1E+02 0.0037 22.7 5.7 43 26-68 47-91 (136)
10 4gpr_A Ubiquitin-conjugating e 29.8 1E+02 0.0036 23.2 5.6 44 27-70 32-77 (151)
11 2r0j_A Ubiquitin carrier prote 29.0 1.2E+02 0.0042 22.7 5.9 46 26-71 28-75 (149)
12 2a7l_A Hypothetical ubiquitin- 28.5 1.7E+02 0.0056 21.8 6.5 44 25-68 50-95 (136)
13 3n7x_A Capsid protein; icosahe 27.3 69 0.0024 26.6 4.4 31 25-55 255-292 (329)
14 1i7k_A Ubiquitin-conjugating e 26.8 1.2E+02 0.004 23.9 5.6 46 26-71 57-104 (179)
15 2ayv_A Ubiquitin-conjugating e 26.7 1.3E+02 0.0043 23.2 5.7 44 27-70 49-94 (166)
16 2grr_A Ubiquitin-conjugating e 26.2 2.1E+02 0.0072 21.7 6.9 45 26-70 39-85 (161)
17 2e2c_A Ubiquitin conjugating e 26.2 1.3E+02 0.0045 22.7 5.6 44 27-70 37-82 (156)
18 1yhp_A Ddcad-1, GP24, calcium- 23.1 3.1E+02 0.011 22.4 10.4 96 79-187 94-193 (212)
19 2ucz_A UBC7, ubiquitin conjuga 21.0 1.7E+02 0.0057 22.2 5.4 46 26-71 32-79 (165)
20 2onu_A Ubiquitin-conjugating e 20.8 2.4E+02 0.0084 21.1 6.2 45 26-70 26-72 (152)
No 1
>3rls_A YAF9, protein AF-9 homolog; yeats domain, histone, transcription; 1.70A {Saccharomyces cerevisiae} PDB: 3fk3_A
Probab=100.00 E-value=1.4e-37 Score=254.71 Aligned_cols=137 Identities=29% Similarity=0.509 Sum_probs=112.5
Q ss_pred eEEEEEEEEceeEEecCC----CCCCCCeeeEEEEEEcCCCCCcccceeeEEEEECCCCCCCeEEeeCCCEEEeeceeee
Q psy5937 4 SNVKITLEIGHEASVRNK----RTPEGFTHDWEVFVRGVDNADIHNFIDKVVFHLHETFPKPKRILKEPPYVVKESGYAG 79 (201)
Q Consensus 4 ~~v~~~i~iG~~~~~~~~----~~~~~~th~W~v~vr~~~~~~~~~~v~kV~f~LH~sf~~p~r~v~~pPF~v~e~GwGe 79 (201)
.+|.++|+|||+|.++++ ..++++||+|+||||+++|+|+++||+||+|+|||||+||+|++++|||+|+|+||||
T Consensus 4 v~i~kpIv~Gn~a~~l~~~~~~~~~~~~TH~WtVyVr~~~~edis~~v~KV~F~LHpSF~np~Rvv~~PPFevtE~GWGe 83 (175)
T 3rls_A 4 LSVSRPIIYGNTAKKMGSVKPPNAPAEHTHLWTIFVRGPQNEDISYFIKKVVFKLHDTYPNPVRSIEAPPFELTETGWGE 83 (175)
T ss_dssp CCEEEEEEEEEEEEECCSCCCTTCCTTCCEEEEEEEECGGGCCCTTTEEEEEEECCTTSSSCEEEECSSSEEEEEEESSC
T ss_pred eEEEeCEEEcceeEECCccccCCCCCCCcEEEEEEEECCCCCChhheEEEEEEEcCCCCCCCcEEEeCCCCEEEEeEEee
Confidence 468999999999999864 2567899999999999999999999999999999999999999999999999999999
Q ss_pred eEcEEEEEEccCCCCCceeEEEeecCCCCccc-----ceEE-----EeccCCccccceeeeEEEEeccccCCCcccc
Q psy5937 80 FTLPIEVYGDLIVPKSKRTTYIFIKPEGFTHD-----WEVF-----VRGVDNADIHNFIDKVVFHLHETFPKPKRIL 146 (201)
Q Consensus 80 F~i~i~i~f~~~~~k~~r~i~h~L~~~~~tH~-----W~~~-----V~~~~~~~vs~fidkVvF~LH~tF~~p~r~~ 146 (201)
|+|.|+|+|++..++++.+++|.|++...... -... +...+++.++++||+++| .+|+..+
T Consensus 84 F~i~I~i~F~~~~~ek~i~i~H~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~se~ydEivF------~ePte~f 154 (175)
T 3rls_A 84 FDINIKVYFVEEANEKVLNFYHRLRLHPYANPVPNSDNGNEQNTTDHNSKDAEVSSVYFDEIVF------NEPNEEF 154 (175)
T ss_dssp CEEEEEEEECGGGCCCCEEEEEECCCCC-----------------------CCEEEEEEEEEEE------SSCCHHH
T ss_pred EEEEEEEEEeCCCCCccEEEEEEEEecCCCCccccccccccccccccccCCCceEEEEeccEEE------eCCCHHH
Confidence 99999999999878889999999998544311 0000 111245677999999999 6666433
No 2
>3qrl_A Transcription initiation factor TFIID subunit 14; yeats domain, IG fold, nucleus, nuclear protein; HET: PGE; 1.70A {Saccharomyces cerevisiae} PDB: 2l7e_A
Probab=99.98 E-value=1e-32 Score=218.54 Aligned_cols=128 Identities=27% Similarity=0.482 Sum_probs=106.7
Q ss_pred EEEEEEEEceeEEecCCCC-CCCCe-eeEE--EEEEcCCCCCcc-cceeeEEEEECCCCCCCeEEeeCCCEEEeeceeee
Q psy5937 5 NVKITLEIGHEASVRNKRT-PEGFT-HDWE--VFVRGVDNADIH-NFIDKVVFHLHETFPKPKRILKEPPYVVKESGYAG 79 (201)
Q Consensus 5 ~v~~~i~iG~~~~~~~~~~-~~~~t-h~W~--v~vr~~~~~~~~-~~v~kV~f~LH~sf~~p~r~v~~pPF~v~e~GwGe 79 (201)
.++++|+|-+++.++++++ .+|++ |+|+ |||||++|+|++ +||+||+|+|||||+||+|++++|||+|+|+||||
T Consensus 7 ~vkrtvr~~T~Q~~~~~~~~~eg~~~h~WtieV~vr~~~g~ei~~~~i~kV~f~LH~sF~np~r~v~~pPF~v~e~GWGe 86 (140)
T 3qrl_A 7 TVKRTIRIKTQQHILPEVPPVENFPVRQWSIEIVLLDDEGKEIPATIFDKVIYHLHPTFANPNRTFTDPPFRIEEQGWGG 86 (140)
T ss_dssp EEEEEEEEEEEEEECTTSCCBTTBCCEEEEEEEEEECTTSCEECCTTEEEEEEECCTTSSSCEEEECSTTCCEEEEESSC
T ss_pred ceEEEEEEEEeeeeCCCCCCCCCCcccEeeEEEEEeCCCCCcCchheEEEEEEEeCCCCCCCeEEEcCCCcEEEEEEeee
Confidence 6899999999999887765 77887 9998 999999999997 89999999999999999999999999999999999
Q ss_pred eEcEEEEEEccCCCCCceeEEEeecCCCCcccceEEEeccCCccccceeeeEEEEeccccCCCcccccCCCeEEeecCC
Q psy5937 80 FTLPIEVYGDLIVPKSKRTTYIFIKPEGFTHDWEVFVRGVDNADIHNFIDKVVFHLHETFPKPKRILKEPPYVVKESGY 158 (201)
Q Consensus 80 F~i~i~i~f~~~~~k~~r~i~h~L~~~~~tH~W~~~V~~~~~~~vs~fidkVvF~LH~tF~~p~r~~~~pPf~v~e~GW 158 (201)
|+|.|+|+|+++. +++++.|.|+++... . +...+++ |+||+..+.+ .|.++|.
T Consensus 87 F~i~I~i~f~~~~--~~~~i~H~L~f~~~~--y-------------~~~h~i~------f~np~~~l~~---~L~~~Gp 139 (140)
T 3qrl_A 87 FPLDISVFLLEKA--GERKIPHDLNFLQES--Y-------------EVEHVIQ------IPLNKPLLTE---ELAKSGS 139 (140)
T ss_dssp CCEEEEEEEGGGT--EEEEEEECCCSSSSE--E-------------EEEEEEE------EESCSHHHHH---HHTTTSC
T ss_pred EEEEEEEEEecCC--CcEEEEEEEEeCCCC--C-------------cceEEEE------ECCCCHHHHH---HHHHhCC
Confidence 9999999999874 367889998875332 1 1112334 4888877776 6666663
No 3
>3qrl_A Transcription initiation factor TFIID subunit 14; yeats domain, IG fold, nucleus, nuclear protein; HET: PGE; 1.70A {Saccharomyces cerevisiae} PDB: 2l7e_A
Probab=99.93 E-value=1.9e-26 Score=182.61 Aligned_cols=77 Identities=35% Similarity=0.781 Sum_probs=72.5
Q ss_pred CCCc-ccce--EEEeccCCccc-cceeeeEEEEeccccCCCcccccCCCeEEeecCCCceEEeEEEEEccCCcCeEEEec
Q psy5937 106 EGFT-HDWE--VFVRGVDNADI-HNFIDKVVFHLHETFPKPKRILKEPPYVVKESGYAGFTLPIEVYLKNNNEPRKIRRK 181 (201)
Q Consensus 106 ~~~t-H~W~--~~V~~~~~~~v-s~fidkVvF~LH~tF~~p~r~~~~pPf~v~e~GWGeF~i~I~i~f~~~~~~~~i~~~ 181 (201)
++++ |+|+ +||++.+++++ ++|++||+|+|||||+||+|++++|||+|+|+|||||+|+|+|+|++++++++|.++
T Consensus 28 eg~~~h~WtieV~vr~~~g~ei~~~~i~kV~f~LH~sF~np~r~v~~pPF~v~e~GWGeF~i~I~i~f~~~~~~~~i~H~ 107 (140)
T 3qrl_A 28 ENFPVRQWSIEIVLLDDEGKEIPATIFDKVIYHLHPTFANPNRTFTDPPFRIEEQGWGGFPLDISVFLLEKAGERKIPHD 107 (140)
T ss_dssp TTBCCEEEEEEEEEECTTSCEECCTTEEEEEEECCTTSSSCEEEECSTTCCEEEEESSCCCEEEEEEEGGGTEEEEEEEC
T ss_pred CCCcccEeeEEEEEeCCCCCcCchheEEEEEEEeCCCCCCCeEEEcCCCcEEEEEEeeeEEEEEEEEEecCCCcEEEEEE
Confidence 5677 9999 89999999988 589999999999999999999999999999999999999999999999899999987
Q ss_pred c
Q psy5937 182 H 182 (201)
Q Consensus 182 ~ 182 (201)
.
T Consensus 108 L 108 (140)
T 3qrl_A 108 L 108 (140)
T ss_dssp C
T ss_pred E
Confidence 5
No 4
>3rls_A YAF9, protein AF-9 homolog; yeats domain, histone, transcription; 1.70A {Saccharomyces cerevisiae} PDB: 3fk3_A
Probab=99.93 E-value=2.3e-26 Score=188.38 Aligned_cols=78 Identities=41% Similarity=0.849 Sum_probs=72.5
Q ss_pred CCCCcccceEEEeccCCccccceeeeEEEEeccccCCCcccccCCCeEEeecCCCceEEeEEEEEccCCcCeEEEecc
Q psy5937 105 PEGFTHDWEVFVRGVDNADIHNFIDKVVFHLHETFPKPKRILKEPPYVVKESGYAGFTLPIEVYLKNNNEPRKIRRKH 182 (201)
Q Consensus 105 ~~~~tH~W~~~V~~~~~~~vs~fidkVvF~LH~tF~~p~r~~~~pPf~v~e~GWGeF~i~I~i~f~~~~~~~~i~~~~ 182 (201)
+++++|+|++||++.++++++.|+++|+|+|||||+||+|++++|||+|+|+|||||+|.|+|+|+++++++++++.|
T Consensus 28 ~~~~TH~WtVyVr~~~~edis~~v~KV~F~LHpSF~np~Rvv~~PPFevtE~GWGeF~i~I~i~F~~~~~ek~i~i~H 105 (175)
T 3rls_A 28 PAEHTHLWTIFVRGPQNEDISYFIKKVVFKLHDTYPNPVRSIEAPPFELTETGWGEFDINIKVYFVEEANEKVLNFYH 105 (175)
T ss_dssp CTTCCEEEEEEEECGGGCCCTTTEEEEEEECCTTSSSCEEEECSSSEEEEEEESSCCEEEEEEEECGGGCCCCEEEEE
T ss_pred CCCCcEEEEEEEECCCCCChhheEEEEEEEcCCCCCCCcEEEeCCCCEEEEeEEeeEEEEEEEEEeCCCCCccEEEEE
Confidence 467999999999999999999999999999999999999999999999999999999999999999987777666543
No 5
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=33.12 E-value=73 Score=24.29 Aligned_cols=45 Identities=13% Similarity=0.283 Sum_probs=33.2
Q ss_pred CeeeEEEEEEcCCCCCcccceeeEEEEECCCCC--CCeEEeeCCCEE
Q psy5937 27 FTHDWEVFVRGVDNADIHNFIDKVVFHLHETFP--KPKRILKEPPYV 71 (201)
Q Consensus 27 ~th~W~v~vr~~~~~~~~~~v~kV~f~LH~sf~--~p~r~v~~pPF~ 71 (201)
.-..|.+-+.|+.|..-..=+=++.+.+-++|+ .|...+..+.|.
T Consensus 32 nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H 78 (164)
T 3h8k_A 32 NFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFH 78 (164)
T ss_dssp CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCC
T ss_pred CccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCcc
Confidence 457999999998876655555667888888884 477777776554
No 6
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=31.62 E-value=1.4e+02 Score=22.83 Aligned_cols=44 Identities=20% Similarity=0.390 Sum_probs=31.4
Q ss_pred CeeeEEEEEEcCCCCCcccceeeEEEEECCCCC--CCeEEeeCCCE
Q psy5937 27 FTHDWEVFVRGVDNADIHNFIDKVVFHLHETFP--KPKRILKEPPY 70 (201)
Q Consensus 27 ~th~W~v~vr~~~~~~~~~~v~kV~f~LH~sf~--~p~r~v~~pPF 70 (201)
.-..|.+-+.|+.|.....=+=++...+-++|+ .|...+..+.|
T Consensus 43 nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t~i~ 88 (163)
T 3rcz_B 43 DLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLF 88 (163)
T ss_dssp EEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCC
T ss_pred CccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeCCCc
Confidence 458999999998876655555567788888884 46666655433
No 7
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=30.33 E-value=1.5e+02 Score=22.43 Aligned_cols=44 Identities=16% Similarity=0.303 Sum_probs=30.9
Q ss_pred CeeeEEEEEEcCCCCCcccceeeEEEEECCCCC--CCeEEeeCCCE
Q psy5937 27 FTHDWEVFVRGVDNADIHNFIDKVVFHLHETFP--KPKRILKEPPY 70 (201)
Q Consensus 27 ~th~W~v~vr~~~~~~~~~~v~kV~f~LH~sf~--~p~r~v~~pPF 70 (201)
.-..|.+.+.|+.|..-..=+=++...+-++|+ .|...+..+.|
T Consensus 37 nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~ 82 (157)
T 2gjd_A 37 DLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFY 82 (157)
T ss_dssp EEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTTCC
T ss_pred cccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCCCc
Confidence 558999999998775554445567777888884 46776666544
No 8
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=29.80 E-value=1.1e+02 Score=22.20 Aligned_cols=43 Identities=19% Similarity=0.265 Sum_probs=29.6
Q ss_pred CCeeeEEEEEEcCCCCCcccceeeEEEEECCCCC--CCeEEeeCC
Q psy5937 26 GFTHDWEVFVRGVDNADIHNFIDKVVFHLHETFP--KPKRILKEP 68 (201)
Q Consensus 26 ~~th~W~v~vr~~~~~~~~~~v~kV~f~LH~sf~--~p~r~v~~p 68 (201)
+.-.+|.+-+.|+.+..-..=+=++...+-++|+ .|...+..+
T Consensus 33 ~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~ 77 (125)
T 2fo3_A 33 NNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQK 77 (125)
T ss_dssp TCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSS
T ss_pred chhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCC
Confidence 3458899999998775544434466677778884 467766665
No 9
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=29.76 E-value=1.1e+02 Score=22.75 Aligned_cols=43 Identities=19% Similarity=0.285 Sum_probs=29.8
Q ss_pred CCeeeEEEEEEcCCCCCcccceeeEEEEECCCCC--CCeEEeeCC
Q psy5937 26 GFTHDWEVFVRGVDNADIHNFIDKVVFHLHETFP--KPKRILKEP 68 (201)
Q Consensus 26 ~~th~W~v~vr~~~~~~~~~~v~kV~f~LH~sf~--~p~r~v~~p 68 (201)
+.-..|.+.+.|+.+..-..=+=++.+.+-++|+ .|...+..+
T Consensus 47 ~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~ 91 (136)
T 2h2y_A 47 SNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQK 91 (136)
T ss_dssp TCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSS
T ss_pred ccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCC
Confidence 3458899999998765554444566777778884 467766665
No 10
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=29.75 E-value=1e+02 Score=23.15 Aligned_cols=44 Identities=16% Similarity=0.326 Sum_probs=31.1
Q ss_pred CeeeEEEEEEcCCCCCcccceeeEEEEECCCCC--CCeEEeeCCCE
Q psy5937 27 FTHDWEVFVRGVDNADIHNFIDKVVFHLHETFP--KPKRILKEPPY 70 (201)
Q Consensus 27 ~th~W~v~vr~~~~~~~~~~v~kV~f~LH~sf~--~p~r~v~~pPF 70 (201)
.-.+|.+-+.|+.|.....=+=++.+.+-++|+ .|...+..+-|
T Consensus 32 nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~ 77 (151)
T 4gpr_A 32 DIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVY 77 (151)
T ss_dssp CTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred CceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcc
Confidence 458899999998876655555567777778874 46666666544
No 11
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=29.02 E-value=1.2e+02 Score=22.68 Aligned_cols=46 Identities=20% Similarity=0.305 Sum_probs=31.9
Q ss_pred CCeeeEEEEEEcCCCCCcccceeeEEEEECCCCC--CCeEEeeCCCEE
Q psy5937 26 GFTHDWEVFVRGVDNADIHNFIDKVVFHLHETFP--KPKRILKEPPYV 71 (201)
Q Consensus 26 ~~th~W~v~vr~~~~~~~~~~v~kV~f~LH~sf~--~p~r~v~~pPF~ 71 (201)
+.-..|.+.+.|+.|..-..=+=++.+.+-++|+ .|...+..+-|.
T Consensus 28 ~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H 75 (149)
T 2r0j_A 28 ENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYH 75 (149)
T ss_dssp TEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCB
T ss_pred CcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCcc
Confidence 3568999999998775554445567777788884 477777666443
No 12
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=28.49 E-value=1.7e+02 Score=21.83 Aligned_cols=44 Identities=14% Similarity=0.294 Sum_probs=29.9
Q ss_pred CCCeeeEEEEEEcCCCCCcccceeeEEEEECCCCCC--CeEEeeCC
Q psy5937 25 EGFTHDWEVFVRGVDNADIHNFIDKVVFHLHETFPK--PKRILKEP 68 (201)
Q Consensus 25 ~~~th~W~v~vr~~~~~~~~~~v~kV~f~LH~sf~~--p~r~v~~p 68 (201)
++.-..|.+.+.|+.|..-..=+=++.+.+-++|+. |...+..+
T Consensus 50 ~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~ 95 (136)
T 2a7l_A 50 QNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGE 95 (136)
T ss_dssp CCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESS
T ss_pred ccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCC
Confidence 345699999999988755544455667777788843 66665544
No 13
>3n7x_A Capsid protein; icosahedral virus capsid, virus-like particle, capsid protei barrel, parvovirus; 2.50A {Infectious hypodermal and hematopoietinecrosis virus}
Probab=27.32 E-value=69 Score=26.57 Aligned_cols=31 Identities=29% Similarity=0.699 Sum_probs=21.7
Q ss_pred CCCeeeE-EEEEE-----cCCCCCcc-cceeeEEEEEC
Q psy5937 25 EGFTHDW-EVFVR-----GVDNADIH-NFIDKVVFHLH 55 (201)
Q Consensus 25 ~~~th~W-~v~vr-----~~~~~~~~-~~v~kV~f~LH 55 (201)
+-+|.+| ++|+| +++|+++. .+--...|.||
T Consensus 255 dhhtndwqqifmrmspikgpngdelklgcrvqadfflh 292 (329)
T 3n7x_A 255 DHHTNDWQQIFMRMSPIKGPNGDELKLGCRVQADFFLH 292 (329)
T ss_dssp SSCCCCCCCEEEEECCCBCTTSCBCCEEEEEEEEEEEE
T ss_pred ccccchHHHHHhhcCCccCCCcceeeccceeeeeeEEE
Confidence 4568999 88987 46777764 44445677787
No 14
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=26.82 E-value=1.2e+02 Score=23.86 Aligned_cols=46 Identities=15% Similarity=0.307 Sum_probs=32.2
Q ss_pred CCeeeEEEEEEcCCCCCcccceeeEEEEECCCCC--CCeEEeeCCCEE
Q psy5937 26 GFTHDWEVFVRGVDNADIHNFIDKVVFHLHETFP--KPKRILKEPPYV 71 (201)
Q Consensus 26 ~~th~W~v~vr~~~~~~~~~~v~kV~f~LH~sf~--~p~r~v~~pPF~ 71 (201)
+.-..|.+-+.|+.|.....=+=++.+.+-++|+ .|...+..+-|.
T Consensus 57 ~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~H 104 (179)
T 1i7k_A 57 DNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYH 104 (179)
T ss_dssp TEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCS
T ss_pred CcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCcc
Confidence 3558999999998875554445567777778884 477777766554
No 15
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=26.73 E-value=1.3e+02 Score=23.22 Aligned_cols=44 Identities=16% Similarity=0.323 Sum_probs=30.9
Q ss_pred CeeeEEEEEEcCCCCCcccceeeEEEEECCCCC--CCeEEeeCCCE
Q psy5937 27 FTHDWEVFVRGVDNADIHNFIDKVVFHLHETFP--KPKRILKEPPY 70 (201)
Q Consensus 27 ~th~W~v~vr~~~~~~~~~~v~kV~f~LH~sf~--~p~r~v~~pPF 70 (201)
.-..|.+.+.|+.+..-..=+=++.+.+-++|+ .|...+..+-|
T Consensus 49 nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~ 94 (166)
T 2ayv_A 49 DMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIY 94 (166)
T ss_dssp CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCC
T ss_pred CcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCc
Confidence 458899999998775555445566777778884 46777666544
No 16
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=26.16 E-value=2.1e+02 Score=21.66 Aligned_cols=45 Identities=18% Similarity=0.363 Sum_probs=30.4
Q ss_pred CCeeeEEEEEEcCCCCCcccceeeEEEEECCCCCC--CeEEeeCCCE
Q psy5937 26 GFTHDWEVFVRGVDNADIHNFIDKVVFHLHETFPK--PKRILKEPPY 70 (201)
Q Consensus 26 ~~th~W~v~vr~~~~~~~~~~v~kV~f~LH~sf~~--p~r~v~~pPF 70 (201)
+.-..|.+.+.|+.|.....=+=++...+-++|+. |...+..+-|
T Consensus 39 ~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~ 85 (161)
T 2grr_A 39 MNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLF 85 (161)
T ss_dssp EEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred CCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEecCcc
Confidence 35589999999987655443344677778888854 6666655433
No 17
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=26.15 E-value=1.3e+02 Score=22.71 Aligned_cols=44 Identities=14% Similarity=0.332 Sum_probs=31.0
Q ss_pred CeeeEEEEEEcCCCCCcccceeeEEEEECCCCC--CCeEEeeCCCE
Q psy5937 27 FTHDWEVFVRGVDNADIHNFIDKVVFHLHETFP--KPKRILKEPPY 70 (201)
Q Consensus 27 ~th~W~v~vr~~~~~~~~~~v~kV~f~LH~sf~--~p~r~v~~pPF 70 (201)
.-..|.+-+.|+.|..-..=+=++.+.+-++|+ .|...+..+-|
T Consensus 37 ~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~ 82 (156)
T 2e2c_A 37 NLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCW 82 (156)
T ss_dssp CTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred CccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCcc
Confidence 457899999998775554434467777888884 47777766654
No 18
>1yhp_A Ddcad-1, GP24, calcium-dependent cell adhesion molecule-1; NMR {Dictyostelium discoideum} PDB: 2b1o_A
Probab=23.05 E-value=3.1e+02 Score=22.42 Aligned_cols=96 Identities=17% Similarity=0.219 Sum_probs=51.6
Q ss_pred eeEcEEEEEEccCCCCCceeEEEeecCCCCcccceEEEeccCCccccceeeeEEEEeccccCCCcccccCCCeEEeecCC
Q psy5937 79 GFTLPIEVYGDLIVPKSKRTTYIFIKPEGFTHDWEVFVRGVDNADIHNFIDKVVFHLHETFPKPKRILKEPPYVVKESGY 158 (201)
Q Consensus 79 eF~i~i~i~f~~~~~k~~r~i~h~L~~~~~tH~W~~~V~~~~~~~vs~fidkVvF~LH~tF~~p~r~~~~pPf~v~e~GW 158 (201)
+|.-.|.|-|++..+.......+.+++.... .+.+. ++. |-+...++-..++..-++++ -.|++.+|
T Consensus 94 ~~~~~i~ir~~~~~~~~~~~Y~lti~p~~~~---~v~~~--sg~------dY~~v~ip~L~P~d~~ivtq--IsVr~~~~ 160 (212)
T 1yhp_A 94 AFQWAVDVKIVNKVNSTAGSYEMTITPYQVD---KVACK--DGD------DFVQLPIPKLTPPDSEIVSH--LTVRQTHT 160 (212)
T ss_dssp SCSEEEEEEEEESSCSSCTTEEEEEEETTCC---CEEEE--SSS------SCEEEEECCCSSTTSCEEEE--EEEEESST
T ss_pred cceEEEEEEEEcCCCCCCceEEEEEeeeecC---CEEEe--cCC------ceEEEecCCcCCCCCCEEEE--EEEEeCCC
Confidence 5554566666666544444444555552221 11111 111 11233234344332333333 37889999
Q ss_pred -CceEEeEEEEEccCCcCeEEEeccC---CCCC
Q psy5937 159 -AGFTLPIEVYLKNNNEPRKIRRKHT---TPPS 187 (201)
Q Consensus 159 -GeF~i~I~i~f~~~~~~~~i~~~~~---~~~~ 187 (201)
|++-..=.||||.+...-.|.++.+ +|..
T Consensus 161 pg~~VanGSvYFKYd~s~g~I~~~~~~e~fP~n 193 (212)
T 1yhp_A 161 PYDYVVNGSVYFKYSPTTGQVTVIKKDETFPKN 193 (212)
T ss_dssp TCCEEEEEEEEEEEETTTTEEEEECCTTTCCSS
T ss_pred CCeEEEeeeEEEEECCCCCEEEEecccCCCCcc
Confidence 9999999999998755455555444 6653
No 19
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=20.95 E-value=1.7e+02 Score=22.24 Aligned_cols=46 Identities=11% Similarity=0.275 Sum_probs=30.8
Q ss_pred CCeeeEEEEEEcCCCCCcccceeeEEEEECCCCC--CCeEEeeCCCEE
Q psy5937 26 GFTHDWEVFVRGVDNADIHNFIDKVVFHLHETFP--KPKRILKEPPYV 71 (201)
Q Consensus 26 ~~th~W~v~vr~~~~~~~~~~v~kV~f~LH~sf~--~p~r~v~~pPF~ 71 (201)
+.-..|.+.+.|+.|..-..=+=++...+-++|+ .|...+..+-|.
T Consensus 32 ~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~H 79 (165)
T 2ucz_A 32 NNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILH 79 (165)
T ss_dssp SCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSC
T ss_pred CCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCcc
Confidence 3457999999998775544334456666778884 477777665443
No 20
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=20.76 E-value=2.4e+02 Score=21.12 Aligned_cols=45 Identities=24% Similarity=0.355 Sum_probs=31.0
Q ss_pred CCeeeEEEEEEcCCCCCcccceeeEEEEECCCCC--CCeEEeeCCCE
Q psy5937 26 GFTHDWEVFVRGVDNADIHNFIDKVVFHLHETFP--KPKRILKEPPY 70 (201)
Q Consensus 26 ~~th~W~v~vr~~~~~~~~~~v~kV~f~LH~sf~--~p~r~v~~pPF 70 (201)
+.-..|.+-+.|+.+..-..=+=++...+-++|+ .|...+..+.|
T Consensus 26 ~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~ 72 (152)
T 2onu_A 26 GSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLL 72 (152)
T ss_dssp TEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCC
T ss_pred CccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCc
Confidence 4568999999998775554445567777778884 46666665543
Done!