RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5937
         (201 letters)



>d2ix0a4 b.40.4.16 (A:173-557) Exoribonuclease 2, RNB {Escherichia
           coli [TaxId: 562]}
          Length = 385

 Score = 26.5 bits (57), Expect = 2.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)

Query: 77  YAGFTLPIEVYGDLIV 92
           YA +T PI  YGD+I 
Sbjct: 320 YATWTSPIRKYGDMIN 335


>d2vnud4 b.40.4.16 (D:495-910) Exosome complex exonuclease RRP44
           {Saccharomyces cerevisiae [TaxId: 4932]}
          Length = 416

 Score = 25.7 bits (55), Expect = 4.3
 Identities = 7/16 (43%), Positives = 9/16 (56%)

Query: 77  YAGFTLPIEVYGDLIV 92
           Y  FT PI  Y D++ 
Sbjct: 345 YTHFTSPIRRYCDVVA 360


>d2r7da2 b.40.4.16 (A:3-403) Ribonuclease II family protein DR0020
           {Deinococcus radiodurans [TaxId: 1299]}
          Length = 401

 Score = 25.3 bits (54), Expect = 6.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 77  YAGFTLPIEVYGDLIV 92
           YA  T P+  Y DL+V
Sbjct: 333 YAQATSPMRRYLDLVV 348


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.140    0.435 

Gapped
Lambda     K      H
   0.267   0.0432    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 840,939
Number of extensions: 42295
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 8
Length of query: 201
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 120
Effective length of database: 1,295,466
Effective search space: 155455920
Effective search space used: 155455920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.2 bits)