Query psy594
Match_columns 218
No_of_seqs 156 out of 1128
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 22:23:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy594.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/594hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a65_A Leutaa, Na(+):neurotran 100.0 1.2E-44 4E-49 333.7 7.8 205 2-210 51-381 (519)
2 2a65_A Leutaa, Na(+):neurotran 32.2 21 0.00073 32.4 2.3 6 117-122 225-230 (519)
3 3arc_I Photosystem II reaction 20.3 70 0.0024 18.2 2.2 15 170-184 11-25 (38)
4 3dh4_A Sodium/glucose cotransp 17.3 2.3E+02 0.0077 25.3 6.1 45 154-200 308-352 (530)
5 1jdm_A Sarcolipin; helix, memb 13.9 1.1E+02 0.0038 16.4 1.8 11 101-111 16-26 (31)
6 1q90_L Cytochrome B6F complex 13.9 1.3E+02 0.0043 16.5 2.1 13 109-121 19-31 (32)
7 2xq2_A Sodium/glucose cotransp 8.9 5.7E+02 0.02 22.9 6.2 44 155-200 338-381 (593)
8 2jvw_A Uncharacterized protein 5.7 2E+02 0.007 19.4 1.0 15 189-203 17-31 (88)
9 2wsw_A BCCT family betaine/car 5.5 5.8E+02 0.02 22.9 4.2 39 156-194 399-437 (509)
10 4f4l_A ION transport protein; 4.7 2.4E+02 0.0082 19.5 0.9 35 169-206 69-103 (112)
No 1
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=100.00 E-value=1.2e-44 Score=333.70 Aligned_cols=205 Identities=20% Similarity=0.243 Sum_probs=174.7
Q ss_pred EEEehHHHHHHHHHHHh----hcCCChhhHHHhhccc--ccchhhHHHHHh---------hhhhhhhhhc-----cCc--
Q psy594 2 LFVGGIPLFYMELALGQ----FHRKGAITCWGRIVPL--FKGKMTRLARMA---------SLTWPPALFI-----DGK-- 59 (218)
Q Consensus 2 l~liGiPll~~E~~lGq----~~~~~~i~af~~l~p~--~~gvG~~~~~~~---------I~gW~l~Y~~-----~~~-- 59 (218)
++++|+|++++|+++|| ++|+|++++|++++|+ |||+|+++++++ |+||+++|++ ..+
T Consensus 51 l~~~GiPll~~E~alGq~~~~~~r~~~i~a~~~l~~~~~~~giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s~~~~lp~~ 130 (519)
T 2a65_A 51 FLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEP 130 (519)
T ss_dssp HHHTHHHHHHHHHHHHHHHHTTTCCSHHHHHHHHSCSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHHhcccchhccCCCHHHHHHHhcCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 46789999999999999 8999999999999976 999999999887 8999999998 334
Q ss_pred cCCCc-ccCccchhHhhhhHHhHhhhccCCCCCCcchhHHHHHHHHHHHHHHhhhhccccc----ccccc----------
Q psy594 60 YFNGL-LSGVLVLTQHLNGNRYILEMQHSTGLHDLGYIKWDMALCLLAVYLICYFSMWKGI----STSGK---------- 124 (218)
Q Consensus 60 w~~~~-c~~~~~~~~~~ff~~~vl~~~~s~~~~~~~~~~~~l~~~l~i~w~iv~~gv~~GI----e~~~k---------- 124 (218)
|++++ | ++..++.++||++ +++. ++++++.|.++|++++|++++|++++.++.||+ ||.+|
T Consensus 131 w~~~~~~-~~~~~~~~~~f~~-~l~~--~~~~~~~g~~~~~~~~~~~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vll 206 (519)
T 2a65_A 131 PPNATDP-DSILRPFKEFLYS-YIGV--PKGDEPILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILA 206 (519)
T ss_dssp CC--CCH-HHHHHHHHHHHHH-HHTC--CSSSSCBCCCCHHHHHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHH
T ss_pred ccccCCc-ccccCcHHHHHHH-HHCC--CCCcccccCccHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 76431 1 0112345578866 4665 677788899999999999999988888887776 44444
Q ss_pred -------------------cceeeeecCcccCCCceeee-----------------------------------------
Q psy594 125 -------------------GIKYYLQPNFDAITKSEVSG----------------------------------------- 144 (218)
Q Consensus 125 -------------------Gl~~~f~pd~~~l~~~~vw~----------------------------------------- 144 (218)
|++|||+|||++|.|+++|.
T Consensus 207 iiL~ir~ltLpGp~~~A~~Gl~~~~~Pd~s~L~~~~vw~~A~gQ~FFSLslG~G~~ity~SY~~~~~n~~~~a~~v~~~n 286 (519)
T 2a65_A 207 VFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATLN 286 (519)
T ss_dssp HHHHHHHTTCEETTEEHHHHHHHHHSCCTTSTTCHHHHHHHHHHHHHHHTTTSSHHHHHHTTSCTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCchhHHHHHHHHhcCCHHHhCCHHHHHHHHHHHHHHhHHHHhHHhhhhcccCCCcChHhhHHHHHHHH
Confidence 58999999999999999999
Q ss_pred ----------------------e------cCC-CceehhhHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhHhHHHHHHH
Q psy594 145 ----------------------D------TSG-PGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITA 195 (218)
Q Consensus 145 ----------------------~------~~G-~~L~Fi~~P~~f~~mp~g~~~~~lFF~~l~~agltS~i~~~E~~v~~ 195 (218)
+ ++| |||+|++||++|++||+|++|+++||+|+++||+||+++++|+++++
T Consensus 287 ~~~sllaG~~IF~~lgf~a~g~~~~~~v~~~G~pgL~Fi~~P~af~~mp~g~~~~~lFF~~l~~agltS~i~~~E~~vt~ 366 (519)
T 2a65_A 287 EKAEVILGGSISIPAAVAFFGVANAVAIAKAGAFNLGFITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAF 366 (519)
T ss_dssp HHHHHTTHHHHHHHHHHHHHCHHHHHHHHHHCSSHHHHTHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcchHHHhcCCCCceeHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhhHhHHH
Confidence 3 468 99999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCcceeeee
Q psy594 196 LSDGLAMPRDELAGF 210 (218)
Q Consensus 196 l~d~~~~~R~~a~~~ 210 (218)
++|+++++|+|++..
T Consensus 367 l~D~~~~~R~~~~~~ 381 (519)
T 2a65_A 367 LEDELKLSRKHAVLW 381 (519)
T ss_dssp HHHTSCCCHHHHHHH
T ss_pred HHHhhCCcHHHHHHH
Confidence 999999999998653
No 2
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=32.23 E-value=21 Score=32.38 Aligned_cols=6 Identities=17% Similarity=0.362 Sum_probs=2.6
Q ss_pred cccccc
Q psy594 117 KGISTS 122 (218)
Q Consensus 117 ~GIe~~ 122 (218)
+|++-.
T Consensus 225 ~Gl~~~ 230 (519)
T 2a65_A 225 DGLNFL 230 (519)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 344443
No 3
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=20.34 E-value=70 Score=18.22 Aligned_cols=15 Identities=33% Similarity=0.742 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHh
Q psy594 170 SLIFFMMLLTLGLDS 184 (218)
Q Consensus 170 ~~lFF~~l~~agltS 184 (218)
-++||+.|++-|+-|
T Consensus 11 vV~ffvsLFiFGfLs 25 (38)
T 3arc_I 11 VVTFFVLLFVFGFLS 25 (38)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccccC
Confidence 578999999988755
No 4
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=17.29 E-value=2.3e+02 Score=25.28 Aligned_cols=45 Identities=16% Similarity=0.107 Sum_probs=34.8
Q ss_pred hhHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHhcC
Q psy594 154 IVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDGL 200 (218)
Q Consensus 154 i~~P~~f~~mp~g~~~~~lFF~~l~~agltS~i~~~E~~v~~l~d~~ 200 (218)
.++|.....+| +....++...++-|.+||.-+.+-...+.+.+..
T Consensus 308 ~~~p~l~~~lp--~~l~Gl~~a~llAA~mST~ss~l~s~st~~~~Di 352 (530)
T 3dh4_A 308 KAYPWLTQFLP--VGVKGVVFAALAAAIVSSLASMLNSTATIFTMDI 352 (530)
T ss_dssp GHHHHHHTTCC--TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHcc--hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHH
Confidence 35688776555 6677788888888899999999999888876543
No 5
>1jdm_A Sarcolipin; helix, membrane protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=13.86 E-value=1.1e+02 Score=16.38 Aligned_cols=11 Identities=9% Similarity=0.516 Sum_probs=8.1
Q ss_pred HHHHHHHHHHh
Q psy594 101 ALCLLAVYLIC 111 (218)
Q Consensus 101 ~~~l~i~w~iv 111 (218)
++|+++.|++|
T Consensus 16 LI~vlLi~llV 26 (31)
T 1jdm_A 16 LITVILMWLLV 26 (31)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 46778888776
No 6
>1q90_L Cytochrome B6F complex subunit PETL; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.24.1
Probab=13.85 E-value=1.3e+02 Score=16.54 Aligned_cols=13 Identities=23% Similarity=0.322 Sum_probs=10.3
Q ss_pred HHhhhhccccccc
Q psy594 109 LICYFSMWKGIST 121 (218)
Q Consensus 109 ~iv~~gv~~GIe~ 121 (218)
.+.+.|+.||||-
T Consensus 19 ~~lfiGL~K~IkL 31 (32)
T 1q90_L 19 LGIYLGLLKVVKL 31 (32)
T ss_dssp HHHHHHHHTTSCC
T ss_pred HHHHHHHhccccc
Confidence 6778899898873
No 7
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=8.86 E-value=5.7e+02 Score=22.93 Aligned_cols=44 Identities=16% Similarity=0.125 Sum_probs=34.6
Q ss_pred hHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHhcC
Q psy594 155 VYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDGL 200 (218)
Q Consensus 155 ~~P~~f~~mp~g~~~~~lFF~~l~~agltS~i~~~E~~v~~l~d~~ 200 (218)
++|.....+| +....+++..++-|.++|.-+.+-...+.+.+..
T Consensus 338 ~~p~l~~~lp--~~l~gl~~a~llaA~mST~~s~l~a~st~~~~Di 381 (593)
T 2xq2_A 338 AYPWLTQFLP--VGVKGVVFAALAAAIVSSLASMLNSTATIFTMDI 381 (593)
T ss_dssp HHHHHHHTSC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777664444 7788889999999999999999988888876543
No 8
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=5.72 E-value=2e+02 Score=19.43 Aligned_cols=15 Identities=13% Similarity=0.237 Sum_probs=12.4
Q ss_pred HHHHHHHHHhcCCCC
Q psy594 189 SEAIITALSDGLAMP 203 (218)
Q Consensus 189 ~E~~v~~l~d~~~~~ 203 (218)
+|.+++.|.|.+||.
T Consensus 17 LE~ilt~Lv~~YGW~ 31 (88)
T 2jvw_A 17 LQKLLTELVEHYGWE 31 (88)
T ss_dssp HHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHhCHH
Confidence 688899999988764
No 9
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=5.49 E-value=5.8e+02 Score=22.91 Aligned_cols=39 Identities=15% Similarity=0.049 Sum_probs=29.4
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHHHhhhHhHHHHHH
Q psy594 156 YPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIIT 194 (218)
Q Consensus 156 ~P~~f~~mp~g~~~~~lFF~~l~~agltS~i~~~E~~v~ 194 (218)
+-+.+.++|.+.+.++++-+++.+-=+||+=|..=++-+
T Consensus 399 lf~~l~~lP~~~i~~~l~iil~~~FfvTSaDS~s~vi~~ 437 (509)
T 2wsw_A 399 IIETWAALPLSTATMWGFFILCFIATVTLINACSYTLAM 437 (509)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCChHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 445688999999999999888877777777665544443
No 10
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=4.71 E-value=2.4e+02 Score=19.47 Aligned_cols=35 Identities=20% Similarity=0.456 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHhhhHhHHHHHHHHHhcCCCCcce
Q psy594 169 WSLIFFMMLLTLGLDSSFGGSEAIITALSDGLAMPRDE 206 (218)
Q Consensus 169 ~~~lFF~~l~~agltS~i~~~E~~v~~l~d~~~~~R~~ 206 (218)
++.+||+...+.+ .+-++...++-+.|.+...|++
T Consensus 69 ~a~iyFi~fi~i~---~fi~lNLfiaVi~~~f~~~~~~ 103 (112)
T 4f4l_A 69 NAWVFFIPFIMLT---TFTVLNLFIGIIVDAMAITKEQ 103 (112)
T ss_dssp TTHHHHHHHHHHH---HHHHHHHHTTTC----------
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 4557777666554 3566666777777777554443
Done!