RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy594
(218 letters)
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane
protein, transport protein; HET: BOG; 1.65A {Aquifex
aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A*
2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A*
3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A*
3uso_A 3usp_A* 3qs5_A* ...
Length = 519
Score = 58.5 bits (142), Expect = 2e-10
Identities = 18/60 (30%), Positives = 25/60 (41%)
Query: 145 DTSGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDGLAMPR 204
L FI PA + G F ++F +L GL SS + +I L D L + R
Sbjct: 316 KAGAFNLGFITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELKLSR 375
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.1 bits (90), Expect = 7e-04
Identities = 41/231 (17%), Positives = 66/231 (28%), Gaps = 76/231 (32%)
Query: 3 FVGGIPLFYMELALGQFHRKGAI-----TCWGRIVPLF-----------------KGKMT 40
I F+ L L + + +I P + + ++
Sbjct: 180 MDFKI--FW--LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 41 RLARMASLTWPPALFI-DG-------KYFNGLLSGVLVLTQH------LNGNRY--ILEM 84
RL + S + L + FN L +L+ T+ L+ I
Sbjct: 236 RL--LKSKPYENCLLVLLNVQNAKAWNAFN-LSCKILLTTRFKQVTDFLSAATTTHISLD 292
Query: 85 QHSTGLHDLGYIKWDMALCLLAVYLICYFS-----MWKG----ISTSGKGIK-------Y 128
HS L D LL YL C + +S + I+
Sbjct: 293 HHSMTLTP------DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346
Query: 129 YLQPNFDAITKS-EVSGDTSGPGLV------FIVYP--AAIATMPGSIFWS 170
+ N D +T E S + P V+P A I T+ S+ W
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397
Score = 27.5 bits (60), Expect = 3.7
Identities = 9/36 (25%), Positives = 12/36 (33%), Gaps = 11/36 (30%)
Query: 163 MPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSD 198
M IFW L L +S E ++ L
Sbjct: 180 MDFKIFW--------LNLKNCNS---PETVLEMLQK 204
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.15
Identities = 27/166 (16%), Positives = 52/166 (31%), Gaps = 46/166 (27%)
Query: 51 PPALF---IDGK---Y--FNGLLSGVLVLTQHLNGN--RYILEMQHSTGLHDLGYIKWDM 100
ALF +G F G Q GN Y E++ L+ Y
Sbjct: 142 NSALFRAVGEGNAQLVAIFGG---------Q---GNTDDYFEELRD---LYQT-YHVLVG 185
Query: 101 ALCLLAVYLICYFSMWKGISTSGKGIKYYLQPNFDAITKSEVSGDTSGPGLVFIVYPAAI 160
L + + T+ K + Q + + + ++ P +++ I
Sbjct: 186 DLIKFSAETLSELI-----RTTLDAEKVFTQ-GLNIL--EWLENPSNTPDKDYLLS-IPI 236
Query: 161 ATMPGSIFWSLIFFMMLL-TLGLD---------SSFGGSEAIITAL 196
+ P L +++ LG + G S+ ++TA+
Sbjct: 237 S-CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAV 281
Score = 30.4 bits (68), Expect = 0.55
Identities = 16/72 (22%), Positives = 23/72 (31%), Gaps = 23/72 (31%)
Query: 41 RLARM---ASLTWPPAL------FIDGKYFN-GLLSGVLVLTQHL---NGNRYI----LE 83
R+ + W +D F G SG+ VLT G R I L+
Sbjct: 478 RIVDCIIRLPVKWETTTQFKATHILD---FGPGGASGLGVLTHRNKDGTGVRVIVAGTLD 534
Query: 84 MQHSTGLHDLGY 95
+ D G+
Sbjct: 535 INPDD---DYGF 543
Score = 28.9 bits (64), Expect = 1.8
Identities = 32/172 (18%), Positives = 43/172 (25%), Gaps = 73/172 (42%)
Query: 98 WDMA-LCLLAVY--------------LICYFSMWKGISTSGKGIK-YYLQPNF----DAI 137
W+ A Y L +F GK I+ Y F D
Sbjct: 1646 WNRADNHFKDTYGFSILDIVINNPVNLTIHFG-----GEKGKRIRENYSAMIFETIVDGK 1700
Query: 138 TKSEVSGDTSGPGLVFIVY--PA-----------AIATMPGSIFWSLIFFMMLLTLGL-- 182
K+E + A+ M F L + GL
Sbjct: 1701 LKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLM------EKAAFEDLKSKGLIP 1754
Query: 183 -DSSFGG-S--EAIITAL---------SDGL------------AMPRDELAG 209
D++F G S E AL + A+PRDEL
Sbjct: 1755 ADATFAGHSLGE--YAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGR 1804
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like,
oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Length = 414
Score = 28.3 bits (63), Expect = 2.1
Identities = 19/116 (16%), Positives = 35/116 (30%), Gaps = 22/116 (18%)
Query: 95 YIKWDMALCLLAVYLICYFSMW-----------KGISTSGKGIKYYLQPNFDAITKSEVS 143
Y +W + SM+ G ++G + ++V+
Sbjct: 246 YDRWSKGQHCQKKVTVVLDSMYGTTHRMALALLDGARSTGCETVLL---EMTSSDITKVA 302
Query: 144 GDTSGPGLVFIVYPAAIATMPGSIFWSLIFFMMLL------TLGLDSSFGGS-EAI 192
T G V P TM S+ + + ++ L +FG S A+
Sbjct: 303 LHTYDSGAVAFASPTLNNTMMPSV-AAALNYVRGLTLIKGKPAFAFGAFGWSNRAV 357
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ
PSI, protein structure initiative, midwest center for
struc genomics; 1.90A {Haemophilus influenzae} SCOP:
c.80.1.3
Length = 306
Score = 26.2 bits (57), Expect = 8.2
Identities = 14/78 (17%), Positives = 30/78 (38%)
Query: 29 GRIVPLFKGKMTRLARMASLTWPPALFIDGKYFNGLLSGVLVLTQHLNGNRYILEMQHST 88
GR++ + G RL + + PP + + G+++G +H
Sbjct: 72 GRLIYIGAGTSGRLGVLDASECPPTFGVSTEMVKGIIAGGECAIRHPVEGAEDNTKAVLN 131
Query: 89 GLHDLGYIKWDMALCLLA 106
L + + K D+ + + A
Sbjct: 132 DLQSIHFSKNDVLVGIAA 149
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.142 0.448
Gapped
Lambda K H
0.267 0.0681 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,434,199
Number of extensions: 202502
Number of successful extensions: 417
Number of sequences better than 10.0: 1
Number of HSP's gapped: 416
Number of HSP's successfully gapped: 17
Length of query: 218
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 128
Effective length of database: 4,188,903
Effective search space: 536179584
Effective search space used: 536179584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.1 bits)