RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy594
         (218 letters)



>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter
          homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
          Length = 509

 Score = 42.1 bits (98), Expect = 3e-05
 Identities = 9/38 (23%), Positives = 15/38 (39%)

Query: 1  MLFVGGIPLFYMELALGQFHRKGAITCWGRIVPLFKGK 38
             + GIPL ++E A+G++           I  L    
Sbjct: 46 AFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRN 83



 Score = 39.0 bits (90), Expect = 3e-04
 Identities = 18/60 (30%), Positives = 25/60 (41%)

Query: 145 DTSGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDGLAMPR 204
                 L FI  PA  +   G  F   ++F +L   GL SS    + +I  L D L + R
Sbjct: 312 KAGAFNLGFITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELKLSR 371


>d1khva_ e.8.1.4 (A:) Viral RNA polymerase {Rabbit hemorrhagic
           disease virus [TaxId: 11976]}
          Length = 497

 Score = 26.6 bits (58), Expect = 2.9
 Identities = 8/101 (7%), Positives = 28/101 (27%), Gaps = 14/101 (13%)

Query: 18  QFHRKGAITCWGRIVPLFKGKMTRLARMASLTWPPALFIDGKYFNGLLSGVLVLTQHLNG 77
           +             V +    +  +    +      L +D   ++  +S  +V       
Sbjct: 207 KLKMVARFGPIAVGVDMTSRDVDVIINNLTSKASDFLCLDYSKWDSTMSPCVV------- 259

Query: 78  NRYILEMQHSTGLHDLGYIKWDMALCLLAVYLICYFSMWKG 118
            R  +++     L D    + ++   ++        ++   
Sbjct: 260 -RLAIDI-----LADCCE-QTELTKSVVLTLKSHPMTILDA 293


>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 104

 Score = 24.7 bits (53), Expect = 5.2
 Identities = 10/66 (15%), Positives = 21/66 (31%), Gaps = 4/66 (6%)

Query: 2  LFVGGIPLFYMELALGQFHRKGAITCWGRIVPLFKGKMTRLARMASLTWPP----ALFID 57
           F+G +P    E ++ +F R   I+           +  +    A          AL ++
Sbjct: 18 AFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLN 77

Query: 58 GKYFNG 63
           +    
Sbjct: 78 EESLGN 83


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.142    0.448 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 825,736
Number of extensions: 37033
Number of successful extensions: 101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 5
Length of query: 218
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 136
Effective length of database: 1,281,736
Effective search space: 174316096
Effective search space used: 174316096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.7 bits)