Query psy5940
Match_columns 278
No_of_seqs 144 out of 1549
Neff 9.1
Searched_HMMs 46136
Date Fri Aug 16 22:23:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5940.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5940hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1427|consensus 100.0 2.5E-40 5.4E-45 274.9 13.2 244 7-263 54-313 (443)
2 COG5184 ATS1 Alpha-tubulin sup 100.0 7.5E-36 1.6E-40 262.6 21.1 248 6-266 101-374 (476)
3 COG5184 ATS1 Alpha-tubulin sup 100.0 2.5E-34 5.4E-39 253.1 20.7 244 10-270 177-430 (476)
4 KOG1427|consensus 100.0 4.6E-34 1E-38 237.6 14.3 235 27-273 18-269 (443)
5 KOG0783|consensus 100.0 1.4E-34 3E-39 266.4 11.5 249 1-261 112-364 (1267)
6 KOG0783|consensus 99.9 6.3E-24 1.4E-28 196.4 12.8 236 6-261 174-418 (1267)
7 KOG1428|consensus 99.9 2.3E-21 5.1E-26 186.0 18.1 186 60-265 567-852 (3738)
8 KOG1428|consensus 99.8 8E-18 1.7E-22 162.2 16.2 179 5-188 609-892 (3738)
9 PF00415 RCC1: Regulator of ch 99.4 9.4E-13 2E-17 84.1 4.5 50 28-77 1-51 (51)
10 PF00415 RCC1: Regulator of ch 99.3 2E-12 4.3E-17 82.6 5.0 50 80-132 1-51 (51)
11 PF13540 RCC1_2: Regulator of 99.2 2.5E-11 5.4E-16 68.2 4.0 30 64-93 1-30 (30)
12 KOG0941|consensus 99.2 1.2E-13 2.7E-18 129.5 -9.5 142 53-201 5-156 (850)
13 PF13540 RCC1_2: Regulator of 99.2 5.1E-11 1.1E-15 66.9 4.5 30 116-148 1-30 (30)
14 KOG0941|consensus 98.9 4.4E-11 9.5E-16 112.7 -5.9 138 6-147 11-156 (850)
15 KOG0315|consensus 91.6 7.7 0.00017 33.0 14.9 71 63-145 126-198 (311)
16 KOG3669|consensus 89.2 7.6 0.00016 36.8 11.6 106 69-196 190-299 (705)
17 KOG3669|consensus 88.6 5.6 0.00012 37.6 10.3 70 63-141 228-299 (705)
18 KOG0291|consensus 87.5 31 0.00067 34.0 15.5 159 16-203 305-470 (893)
19 PF07569 Hira: TUP1-like enhan 85.1 7.6 0.00016 32.4 8.7 30 113-145 12-41 (219)
20 PF11725 AvrE: Pathogenicity f 81.8 20 0.00043 38.5 11.5 31 227-257 740-770 (1774)
21 PF07569 Hira: TUP1-like enhan 80.0 8.3 0.00018 32.2 7.1 29 62-90 13-41 (219)
22 KOG0943|consensus 77.1 2.2 4.7E-05 43.8 3.0 127 62-199 374-505 (3015)
23 PHA03098 kelch-like protein; P 76.8 29 0.00063 32.9 10.6 17 183-199 480-496 (534)
24 KOG0646|consensus 76.4 60 0.0013 30.0 11.6 114 63-198 83-205 (476)
25 smart00706 TECPR Beta propelle 74.4 7.7 0.00017 21.8 3.8 25 62-86 8-33 (35)
26 PF12341 DUF3639: Protein of u 70.7 14 0.00031 19.8 3.9 25 114-141 2-26 (27)
27 KOG0293|consensus 65.6 1.1E+02 0.0023 28.2 10.6 68 175-259 398-470 (519)
28 TIGR01062 parC_Gneg DNA topois 65.2 1.5E+02 0.0034 29.6 13.0 119 23-151 540-661 (735)
29 KOG0289|consensus 62.6 1.3E+02 0.0028 27.8 10.6 65 20-88 350-418 (506)
30 PF06739 SBBP: Beta-propeller 62.0 10 0.00022 22.0 2.5 19 127-145 15-33 (38)
31 PF11725 AvrE: Pathogenicity f 60.8 24 0.00053 37.8 6.5 114 6-136 700-815 (1774)
32 PHA02713 hypothetical protein; 59.2 1.5E+02 0.0032 28.5 11.4 18 183-200 505-522 (557)
33 KOG0943|consensus 54.9 8.6 0.00019 39.8 2.2 81 113-198 373-455 (3015)
34 PHA03098 kelch-like protein; P 52.7 1.6E+02 0.0034 27.9 10.4 17 183-199 430-446 (534)
35 PF03785 Peptidase_C25_C: Pept 50.4 21 0.00046 24.6 2.9 34 61-94 15-49 (81)
36 KOG0315|consensus 50.4 1.6E+02 0.0036 25.2 16.7 143 25-199 48-197 (311)
37 KOG1034|consensus 48.5 52 0.0011 29.2 5.7 56 25-88 325-382 (385)
38 TIGR01063 gyrA DNA gyrase, A s 48.5 3.1E+02 0.0067 27.8 12.0 135 9-151 535-675 (800)
39 KOG1900|consensus 47.0 2.4E+02 0.0052 29.9 10.8 163 25-199 95-274 (1311)
40 PF02239 Cytochrom_D1: Cytochr 45.3 1.3E+02 0.0027 27.3 8.1 127 3-142 20-156 (369)
41 KOG4441|consensus 44.0 3.1E+02 0.0067 26.5 13.1 16 131-146 471-486 (571)
42 PF13418 Kelch_4: Galactose ox 43.2 28 0.0006 20.9 2.5 20 126-145 3-22 (49)
43 PF13964 Kelch_6: Kelch motif 42.9 25 0.00054 21.3 2.3 19 182-200 3-21 (50)
44 COG4257 Vgb Streptogramin lyas 42.3 1.5E+02 0.0032 26.0 7.4 102 17-141 103-205 (353)
45 PF13854 Kelch_5: Kelch motif 42.1 30 0.00065 20.2 2.4 18 182-199 6-23 (42)
46 PLN03215 ascorbic acid mannose 41.2 1.6E+02 0.0034 26.8 7.9 61 64-142 162-225 (373)
47 PF07646 Kelch_2: Kelch motif; 41.1 28 0.00061 21.0 2.3 18 182-199 3-20 (49)
48 KOG4441|consensus 40.9 3.4E+02 0.0074 26.2 13.2 19 183-201 468-486 (571)
49 KOG0293|consensus 40.0 3.1E+02 0.0067 25.4 12.6 28 175-202 443-473 (519)
50 PHA02146 hypothetical protein 38.7 34 0.00074 22.8 2.4 29 236-264 23-53 (86)
51 TIGR03300 assembly_YfgL outer 34.2 3.4E+02 0.0073 24.1 10.0 17 125-141 360-376 (377)
52 KOG1408|consensus 33.3 5.1E+02 0.011 26.0 13.0 66 22-87 170-247 (1080)
53 KOG1900|consensus 32.4 2.5E+02 0.0054 29.8 8.4 101 129-262 92-201 (1311)
54 TIGR03548 mutarot_permut cycli 31.4 2.7E+02 0.0059 24.2 7.9 17 183-199 164-180 (323)
55 PLN02772 guanylate kinase 30.9 1.5E+02 0.0032 27.2 6.1 69 181-261 25-97 (398)
56 PF00319 SRF-TF: SRF-type tran 30.5 45 0.00098 20.8 1.9 23 14-36 29-51 (51)
57 KOG4693|consensus 29.8 1E+02 0.0023 26.7 4.6 19 181-199 79-97 (392)
58 COG5308 NUP170 Nuclear pore co 29.4 6.3E+02 0.014 26.2 10.2 212 25-264 98-348 (1263)
59 PF04841 Vps16_N: Vps16, N-ter 29.4 4.5E+02 0.0097 24.1 14.8 27 114-141 217-243 (410)
60 PHA02713 hypothetical protein; 27.8 4.4E+02 0.0095 25.3 9.1 17 183-199 391-407 (557)
61 PF07312 DUF1459: Protein of u 27.4 39 0.00084 23.2 1.3 12 30-41 57-69 (84)
62 PHA02790 Kelch-like protein; P 27.3 4.1E+02 0.0089 24.9 8.7 16 183-198 439-454 (480)
63 PF03785 Peptidase_C25_C: Pept 27.2 1.9E+02 0.0041 20.0 4.7 42 104-150 8-50 (81)
64 KOG0307|consensus 27.0 1.7E+02 0.0038 30.2 6.2 32 175-206 256-292 (1049)
65 KOG1034|consensus 26.9 2.5E+02 0.0055 25.1 6.5 60 75-143 323-382 (385)
66 PF01344 Kelch_1: Kelch motif; 25.9 87 0.0019 18.2 2.7 17 182-198 3-19 (47)
67 PF04841 Vps16_N: Vps16, N-ter 25.2 5.3E+02 0.012 23.6 19.4 25 63-87 129-153 (410)
68 PF13938 DUF4213: Domain of un 24.3 1.1E+02 0.0024 21.2 3.3 23 59-81 9-31 (87)
69 KOG0646|consensus 24.3 5.9E+02 0.013 23.8 15.5 95 24-143 98-196 (476)
70 PF08735 DUF1786: Putative pyr 24.1 81 0.0018 27.0 3.0 24 233-256 169-192 (254)
71 KOG0649|consensus 23.4 4.8E+02 0.01 22.4 12.1 32 113-148 62-93 (325)
72 TIGR02658 TTQ_MADH_Hv methylam 22.9 5.7E+02 0.012 23.1 10.0 132 1-141 79-220 (352)
73 PF01436 NHL: NHL repeat; Int 21.6 1.4E+02 0.003 15.6 3.4 17 127-143 4-20 (28)
74 PF11399 DUF3192: Protein of u 21.5 76 0.0017 23.0 2.0 24 125-148 78-101 (102)
75 PRK14747 cytochrome b6-f compl 21.3 59 0.0013 17.6 1.0 10 251-260 19-28 (29)
76 KOG2444|consensus 20.7 2.2E+02 0.0048 24.0 4.8 61 119-196 66-129 (238)
77 KOG1274|consensus 20.6 9.3E+02 0.02 24.7 14.8 65 19-85 15-80 (933)
No 1
>KOG1427|consensus
Probab=100.00 E-value=2.5e-40 Score=274.87 Aligned_cols=244 Identities=24% Similarity=0.377 Sum_probs=206.1
Q ss_pred CCCCcceeec--cCCceEEEecCCCcEEEEecCCCCcccCCCCCCccCceeeccccCCCEEEEeccCCceEEEeCCCCEE
Q psy5940 7 EEMRPIDHLI--RDRKIDVSSNQFNEVYIWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCMDKFHSVFVSDDGRVW 84 (278)
Q Consensus 7 ~~~~~~~v~~--~~~~~~i~l~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~ 84 (278)
-+..+.-|+. ...|+ |+++-+|++|.||.|..||||+++.+.+..|+.|+.++..+|++.+||++|+++||++|+||
T Consensus 54 ~gv~iR~VasG~~aaH~-vli~megk~~~wGRNekGQLGhgD~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~ 132 (443)
T KOG1427|consen 54 VGVNIRFVASGCAAAHC-VLIDMEGKCYTWGRNEKGQLGHGDMKQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVL 132 (443)
T ss_pred ccceEEEEecccchhhE-EEEecccceeecccCccCccCccchhhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEE
Confidence 3444555553 34555 88899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCcCCCCCCCce-eccEEeecCCCCCEEEEEEccCCCcEEEEEEcCCcEEEEeCCCccccCCCCCCCC------
Q psy5940 85 SCGHGQGGRLGLGSESSV-VSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCGLNSFHQLGLSPPPSH------ 157 (278)
Q Consensus 85 ~~G~n~~gqlg~~~~~~~-~~p~~i~~~~~~~i~~i~~~~~g~~~~~~lt~~G~v~~~G~n~~gqlg~~~~~~~------ 157 (278)
++|.|.+||||.+...+. ..|.++. ....+|..|+| |..|++.|+..+.+.++|...|||||++.+.+.
T Consensus 133 afGeNK~GQlGlgn~~~~v~s~~~~~-~~~~~v~~v~c---ga~ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~ 208 (443)
T KOG1427|consen 133 AFGENKYGQLGLGNAKNEVESTPLPC-VVSDEVTNVAC---GADFTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSS 208 (443)
T ss_pred EecccccccccccccccccccCCCcc-ccCccceeecc---ccceEEEeecccceeecCCccccccccCcchhhcccccc
Confidence 999999999999876543 3333332 33568999999 999999999999999999999999999875432
Q ss_pred -----CCCCeeeccCCCCCCCCeEEEEccCCeEEEEECC-cEEEeeCC-CcccCCCCCCCCCCceeeceEeeecccCCCC
Q psy5940 158 -----IVSPTPIPRSSLKSSQPLIGVCCGRFHSVVYSSR-EVYTFGIH-AGQLGHSPVTVSSASVIEPKVQATIIREDLP 230 (278)
Q Consensus 158 -----~~~p~~i~~~~~~~~~~i~~i~~g~~~~~~l~~~-~vy~wG~n-~gqlG~~~~~~~~~~~~~P~~i~~~~~~~~~ 230 (278)
...|++-....+.+.+ |++++||.+|+++++++ +||+||.. ||+||+.. ..++..|++|+.|......
T Consensus 209 ~~~~~e~~pr~~~i~~~dgvq-iv~~acg~nhtvavd~nkrVysWGFGGyGRLGHaE----qKDEmvpRlik~Fd~~~rg 283 (443)
T KOG1427|consen 209 VRLAYEAQPRPKAIASLDGVQ-IVKVACGTNHTVAVDKNKRVYSWGFGGYGRLGHAE----QKDEMVPRLIKVFDRNNRG 283 (443)
T ss_pred ceeeeecCCCcccccccccee-eEEEeccCcceeeecCCccEEEecccccccccccc----chhhHHHHHHHHhcCCCCC
Confidence 3445555555778888 99999999999999976 99999998 89999999 8999999999988765554
Q ss_pred cceEEEeccCceEEEEecCCcCeEeecCCCCcc
Q psy5940 231 GFIFESNRGTKHSFTAETSLGPEFGGGWTGKKG 263 (278)
Q Consensus 231 ~~i~~i~~G~~hs~~~lt~~g~v~~wG~ng~~~ 263 (278)
--.+.||+..++ +...-|.+|.||.+-+.|
T Consensus 284 --~~~~~~g~t~Sl-~v~e~G~Lf~~g~~k~~g 313 (443)
T KOG1427|consen 284 --PPNAILGYTGSL-NVAEGGQLFMWGKIKNNG 313 (443)
T ss_pred --Ccceeeecccce-eecccceeEEeeccccCc
Confidence 346778888888 788899999999876655
No 2
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=7.5e-36 Score=262.64 Aligned_cols=248 Identities=22% Similarity=0.287 Sum_probs=191.9
Q ss_pred CCCCCcceeeccCCceEEEecCCCcEEEEecCCCCcccCCCC--------------C--CccCceeeccc----cCCCEE
Q psy5940 6 NEEMRPIDHLIRDRKIDVSSNQFNEVYIWGTNANYNLGTGSQ--------------Q--TRDVPELLDSL----KRASIK 65 (278)
Q Consensus 6 ~~~~~~~~v~~~~~~~~i~l~~~g~v~~wG~n~~gqlG~~~~--------------~--~~~~p~~i~~~----~~~~i~ 65 (278)
.+.+.+++++||..|. ++++.+|+||+||.|..|+||.... . ....|..|+.. ...+++
T Consensus 101 ~d~~~i~~~acGg~hs-l~ld~Dg~lyswG~N~~G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv 179 (476)
T COG5184 101 IDKASIIKIACGGNHS-LGLDHDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVV 179 (476)
T ss_pred ccceeeEEeecCCceE-EeecCCCCEEEeccCcccccccccccccccccccccccchhhcccCCceeeccccccCChheE
Confidence 3668899999999998 7789999999999999999998651 1 24678888762 233899
Q ss_pred EEeccCCceEEEeCCCCEEEEeCCCCCcCCCCCCCcee----ccEEeecCCCCCEEEEEEccCCCcEEEEEEcCCcEEEE
Q psy5940 66 QVCMDKFHSVFVSDDGRVWSCGHGQGGRLGLGSESSVV----SPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVC 141 (278)
Q Consensus 66 ~v~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~----~p~~i~~~~~~~i~~i~~~~~g~~~~~~lt~~G~v~~~ 141 (278)
+++||.+++++|+++|+||+||....+.++.+..++.. .++++..+ ...|+++++ |.+|.++|+++|+||+|
T Consensus 180 ~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~p~~v~-~~~i~qla~---G~dh~i~lt~~G~vy~~ 255 (476)
T COG5184 180 KLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVP-KKAIVQLAA---GADHLIALTNEGKVYGW 255 (476)
T ss_pred EeecCCceEEEEccCCcEEEecCccccccccccccccccceeeeeeeecC-chheeeecc---CCceEEEEecCCcEEEe
Confidence 99999999999999999999999988888877433322 23333333 468999999 99999999999999999
Q ss_pred eCCCccccCCCCCCCCCCCCeeeccCCCCCCCCeEEEEccCCeEEEEEC-CcEEEeeCC-CcccCCCCCCCCCCceeece
Q psy5940 142 GLNSFHQLGLSPPPSHIVSPTPIPRSSLKSSQPLIGVCCGRFHSVVYSS-REVYTFGIH-AGQLGHSPVTVSSASVIEPK 219 (278)
Q Consensus 142 G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~~~~i~~i~~g~~~~~~l~~-~~vy~wG~n-~gqlG~~~~~~~~~~~~~P~ 219 (278)
|++..||||.... ++...+..+. .+.....|++|+||.+|+++|++ |++|.||.| +||||.+.+.........|.
T Consensus 256 Gs~qkgqlG~~~~-e~~~~~~lv~--~~f~i~~i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~ 332 (476)
T COG5184 256 GSNQKGQLGRPTS-ERLKLVVLVG--DPFAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPN 332 (476)
T ss_pred cCCcccccCCchh-hhcccccccC--ChhhhhhhhhcccCcceEEEEcCCCeEEEeccchhcccccCcccccceeecccc
Confidence 9999999998765 2323332232 22222227899999999999997 599999999 79999995322222334454
Q ss_pred EeeecccCCCCcceEEEeccCceEEEEecCCcCeEeecCCCCccCCc
Q psy5940 220 VQATIIREDLPGFIFESNRGTKHSFTAETSLGPEFGGGWTGKKGKRL 266 (278)
Q Consensus 220 ~i~~~~~~~~~~~i~~i~~G~~hs~~~lt~~g~v~~wG~ng~~~~~~ 266 (278)
....+.... |..+++|..|++ +|+.+|.+|+||++...++|.
T Consensus 333 ~~~~~~~~~----i~~is~ge~H~l-~L~~~G~l~a~Gr~~~~qlg~ 374 (476)
T COG5184 333 YKQLLSGVT----ICSISAGESHSL-ILRKDGTLYAFGRGDRGQLGI 374 (476)
T ss_pred ccccCCCce----EEEEecCcceEE-EEecCceEEEecCCccccccC
Confidence 444444333 899999999999 899999999999987777664
No 3
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=2.5e-34 Score=253.08 Aligned_cols=244 Identities=24% Similarity=0.298 Sum_probs=190.0
Q ss_pred CcceeeccCCceEEEecCCCcEEEEecCCCCcccCCCCCCcc----CceeeccccCCCEEEEeccCCceEEEeCCCCEEE
Q psy5940 10 RPIDHLIRDRKIDVSSNQFNEVYIWGTNANYNLGTGSQQTRD----VPELLDSLKRASIKQVCMDKFHSVFVSDDGRVWS 85 (278)
Q Consensus 10 ~~~~v~~~~~~~~i~l~~~g~v~~wG~n~~gqlG~~~~~~~~----~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~ 85 (278)
..++++|++.+. ++++++|.||+||.+..+.++.+...+.. .+.++..+ ...|.++++|..|.++|+++|++|.
T Consensus 177 ~vv~l~cg~e~s-vil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~p~~v~-~~~i~qla~G~dh~i~lt~~G~vy~ 254 (476)
T COG5184 177 RVVKLACGWEIS-VILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVP-KKAIVQLAAGADHLIALTNEGKVYG 254 (476)
T ss_pred heEEeecCCceE-EEEccCCcEEEecCccccccccccccccccceeeeeeeecC-chheeeeccCCceEEEEecCCcEEE
Confidence 578888999998 78899999999999999988888444432 24444433 4589999999999999999999999
Q ss_pred EeCCCCCcCCCCCCCceeccEEeecCC-CCCEEEEEEccCCCcEEEEEEcCCcEEEEeCCCccccCCCCCCC---CCCCC
Q psy5940 86 CGHGQGGRLGLGSESSVVSPKKLNFEK-DKDKLGVAMASISQDHSVFLMLSGSVFVCGLNSFHQLGLSPPPS---HIVSP 161 (278)
Q Consensus 86 ~G~n~~gqlg~~~~~~~~~p~~i~~~~-~~~i~~i~~~~~g~~~~~~lt~~G~v~~~G~n~~gqlg~~~~~~---~~~~p 161 (278)
||.|..||||.+.......+.++..+. -..|+.|+| |.+|+++|+++|++|+||.|.|||||.+...+ ....|
T Consensus 255 ~Gs~qkgqlG~~~~e~~~~~~lv~~~f~i~~i~~vac---G~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~ 331 (476)
T COG5184 255 WGSNQKGQLGRPTSERLKLVVLVGDPFAIRNIKYVAC---GKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKP 331 (476)
T ss_pred ecCCcccccCCchhhhcccccccCChhhhhhhhhccc---CcceEEEEcCCCeEEEeccchhcccccCcccccceeeccc
Confidence 999999999999887776666665433 335788899 99999999999999999999999999883321 12334
Q ss_pred eeeccCCCCCCCCeEEEEccCCeEEEEEC-CcEEEeeCC-CcccCCCCCCCCCCceeeceEeeecccCCCCcceEEEecc
Q psy5940 162 TPIPRSSLKSSQPLIGVCCGRFHSVVYSS-REVYTFGIH-AGQLGHSPVTVSSASVIEPKVQATIIREDLPGFIFESNRG 239 (278)
Q Consensus 162 ~~i~~~~~~~~~~i~~i~~g~~~~~~l~~-~~vy~wG~n-~gqlG~~~~~~~~~~~~~P~~i~~~~~~~~~~~i~~i~~G 239 (278)
.... .+.+.. |.+|+++..|+++|.. |.||.||.+ .+|||..+.. ...+..|..+... ..+.+++||
T Consensus 332 ~~~~--~~~~~~-i~~is~ge~H~l~L~~~G~l~a~Gr~~~~qlg~~~~~--~~~~~~~~~ls~~------~~~~~v~~g 400 (476)
T COG5184 332 NYKQ--LLSGVT-ICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEI--TIDVSTPTKLSVA------IKLEQVACG 400 (476)
T ss_pred cccc--cCCCce-EEEEecCcceEEEEecCceEEEecCCccccccCcccc--eeecCCccccccc------cceEEEEec
Confidence 3333 244556 9999999999999996 599999999 5999999822 2223333333222 228999999
Q ss_pred CceEEEEecCCcCeEeecCCCCccCCccchh
Q psy5940 240 TKHSFTAETSLGPEFGGGWTGKKGKRLRSKL 270 (278)
Q Consensus 240 ~~hs~~~lt~~g~v~~wG~ng~~~~~~~~~~ 270 (278)
..|++ +.+.+|+||.||++.++++|.+.+.
T Consensus 401 t~~~~-~~t~~gsvy~wG~ge~gnlG~g~~~ 430 (476)
T COG5184 401 THHNI-ARTDDGSVYSWGWGEHGNLGNGPKE 430 (476)
T ss_pred Cccce-eeccCCceEEecCchhhhccCCchh
Confidence 99999 8999999999998766666655443
No 4
>KOG1427|consensus
Probab=100.00 E-value=4.6e-34 Score=237.56 Aligned_cols=235 Identities=23% Similarity=0.308 Sum_probs=187.3
Q ss_pred CCCcEEEEecCCCCcccCCCCC---CccCceeeccccCCCEEEEecc--CCceEEEeCCCCEEEEeCCCCCcCCCCCCCc
Q psy5940 27 QFNEVYIWGTNANYNLGTGSQQ---TRDVPELLDSLKRASIKQVCMD--KFHSVFVSDDGRVWSCGHGQGGRLGLGSESS 101 (278)
Q Consensus 27 ~~g~v~~wG~n~~gqlG~~~~~---~~~~p~~i~~~~~~~i~~v~~g--~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~ 101 (278)
..|++..+|.-..-+.|-.+.. +...|.++..+.+.+|+-|+.| ..|+++|+-+|+.|.||+|..||||+++...
T Consensus 18 ~~g~ml~~g~v~wd~tgkRd~~~~~NL~sphR~~~l~gv~iR~VasG~~aaH~vli~megk~~~wGRNekGQLGhgD~k~ 97 (443)
T KOG1427|consen 18 KGGEMLFCGAVAWDITGKRDGAMEGNLVSPHRLRPLVGVNIRFVASGCAAAHCVLIDMEGKCYTWGRNEKGQLGHGDMKQ 97 (443)
T ss_pred CCccEEEeccchhhhhcccccccccccccceeccccccceEEEEecccchhhEEEEecccceeecccCccCccCccchhh
Confidence 4567777777666665554332 3467778877888888888855 5899999999999999999999999999988
Q ss_pred eeccEEeecCCCCCEEEEEEccCCCcEEEEEEcCCcEEEEeCCCccccCCCCCCCCCCCCeeeccCCCCCCCCeEEEEcc
Q psy5940 102 VVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCGLNSFHQLGLSPPPSHIVSPTPIPRSSLKSSQPLIGVCCG 181 (278)
Q Consensus 102 ~~~p~~i~~~~~~~i~~i~~~~~g~~~~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~~~~i~~i~~g 181 (278)
...|+.|+.+...+|++.+| |.+|+++||++|.||+||.|.+||||.++....+..|.++- ..+.. |+.|+||
T Consensus 98 ~e~Ptvi~gL~~~~iv~AA~---GrnHTl~ltdtG~v~afGeNK~GQlGlgn~~~~v~s~~~~~---~~~~~-v~~v~cg 170 (443)
T KOG1427|consen 98 RERPTVISGLSKHKIVKAAA---GRNHTLVLTDTGQVLAFGENKYGQLGLGNAKNEVESTPLPC---VVSDE-VTNVACG 170 (443)
T ss_pred ccCCchhhhhhhhhHHHHhh---ccCcEEEEecCCcEEEecccccccccccccccccccCCCcc---ccCcc-ceeeccc
Confidence 99999999999999999999 99999999999999999999999999998755555555543 33445 9999999
Q ss_pred CCeEEEEEC-CcEEEeeCC-CcccCCCCCCC----------CCCceeeceEeeecccCCCCcceEEEeccCceEEEEecC
Q psy5940 182 RFHSVVYSS-REVYTFGIH-AGQLGHSPVTV----------SSASVIEPKVQATIIREDLPGFIFESNRGTKHSFTAETS 249 (278)
Q Consensus 182 ~~~~~~l~~-~~vy~wG~n-~gqlG~~~~~~----------~~~~~~~P~~i~~~~~~~~~~~i~~i~~G~~hs~~~lt~ 249 (278)
.++++.|+. +.+.++|.. |||||++.+.. ..+....|..|..+.... |++++||.+|++ ++.+
T Consensus 171 a~ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~~~dgvq----iv~~acg~nhtv-avd~ 245 (443)
T KOG1427|consen 171 ADFTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIASLDGVQ----IVKVACGTNHTV-AVDK 245 (443)
T ss_pred cceEEEeecccceeecCCccccccccCcchhhccccccceeeeecCCCcccccccccee----eEEEeccCccee-eecC
Confidence 999999996 599999999 69999997321 111123344454444433 999999999999 8999
Q ss_pred CcCeEeecCCCCccCCccchhhhh
Q psy5940 250 LGPEFGGGWTGKKGKRLRSKLEAV 273 (278)
Q Consensus 250 ~g~v~~wG~ng~~~~~~~~~~~~~ 273 (278)
++.||.||..|-+-+|.....+.+
T Consensus 246 nkrVysWGFGGyGRLGHaEqKDEm 269 (443)
T KOG1427|consen 246 NKRVYSWGFGGYGRLGHAEQKDEM 269 (443)
T ss_pred CccEEEeccccccccccccchhhH
Confidence 999999999877666654433333
No 5
>KOG0783|consensus
Probab=100.00 E-value=1.4e-34 Score=266.35 Aligned_cols=249 Identities=33% Similarity=0.523 Sum_probs=218.0
Q ss_pred CcccCCCCCCcceeeccC--CceEEEecCCCcEEEEecCCCCcccCCCCCCccCceeeccccCC--CEEEEeccCCceEE
Q psy5940 1 MTVMDNEEMRPIDHLIRD--RKIDVSSNQFNEVYIWGTNANYNLGTGSQQTRDVPELLDSLKRA--SIKQVCMDKFHSVF 76 (278)
Q Consensus 1 ~~~~~~~~~~~~~v~~~~--~~~~i~l~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~--~i~~v~~g~~~~~~ 76 (278)
++|+|.++..|.|..|.. .++..+++....||+||.|.+..||+|..+....|+.|..+... -|.+|+.++.|+++
T Consensus 112 L~i~Dkeglsplq~~~r~~~~~i~~~~d~pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvf 191 (1267)
T KOG0783|consen 112 LRIKDKEGLSPLQFLSRVLSSTIHPVLDLPNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKFHSVF 191 (1267)
T ss_pred eEEecccCCCHHHHHhhccccccccccCCccceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHHhhceeeE
Confidence 478999999999999875 44456688889999999999999999999998999998766543 68899999999999
Q ss_pred EeCCCCEEEEeCCCCCcCCCCCCCceeccEEeecCCCCCEEEEEEccCCCcEEEEEEcCCcEEEEeCCCccccCCCCCCC
Q psy5940 77 VSDDGRVWSCGHGQGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCGLNSFHQLGLSPPPS 156 (278)
Q Consensus 77 lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~~~~g~~~~~~lt~~G~v~~~G~n~~gqlg~~~~~~ 156 (278)
+++.|+||+||.+..|+||.++....+.|++|+.+.+.++.+|++ ...|+++||..|.||+||.|.++|||..+...
T Consensus 192 l~~kgqvY~cGhG~GGRlG~gdeq~~~iPkrV~gL~gh~~~qisv---s~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~ 268 (1267)
T KOG0783|consen 192 LTEKGQVYVCGHGAGGRLGFGDEQYNFIPKRVPGLIGHKVIQISV---SHTHSLVLTKFGSVYSWGLNGSHQLGLSNDEL 268 (1267)
T ss_pred ecCCCcEEEeccCCCCccCcCcccccccccccccccccceEEEEe---ecceeEEEeecceEEEeecCcccccCCcCchh
Confidence 999999999999999999999998889999999999999999999 99999999999999999999999999998877
Q ss_pred CCCCCeeeccCCCCCCCCeEEEEccCCeEEEEECCcEEEeeCCCcccCCCCCCCCCCceeeceEeeecccCCCCcceEEE
Q psy5940 157 HIVSPTPIPRSSLKSSQPLIGVCCGRFHSVVYSSREVYTFGIHAGQLGHSPVTVSSASVIEPKVQATIIREDLPGFIFES 236 (278)
Q Consensus 157 ~~~~p~~i~~~~~~~~~~i~~i~~g~~~~~~l~~~~vy~wG~n~gqlG~~~~~~~~~~~~~P~~i~~~~~~~~~~~i~~i 236 (278)
....|.+|.-.-+.+.+.|+.|++|..|+++.++-.||+||.|.||||..+ +...+..|+.+-. .. ..|.-+
T Consensus 269 ~~~~p~qI~a~r~kg~~~iIgvaAg~~hsVawt~~~VY~wGlN~GQlGi~~---n~~~Vt~Pr~l~~---~~--~~v~~v 340 (1267)
T KOG0783|consen 269 KKDDPIQITARRIKGFKQIIGVAAGKSHSVAWTDTDVYSWGLNNGQLGISD---NISVVTTPRRLAG---LL--SPVIHV 340 (1267)
T ss_pred hcCchhhhhhHhhcchhhhhhhhcccceeeeeecceEEEecccCceecCCC---CCceeecchhhcc---cc--cceEEE
Confidence 788888887666666544999999999999999999999999999999988 5777888986622 22 338888
Q ss_pred eccCceEEEEecCCcCeEeecCCCC
Q psy5940 237 NRGTKHSFTAETSLGPEFGGGWTGK 261 (278)
Q Consensus 237 ~~G~~hs~~~lt~~g~v~~wG~ng~ 261 (278)
+|-..-|+ +++..+.+|..-+..+
T Consensus 341 ~a~~~ATV-c~~~~~~i~~~ady~~ 364 (1267)
T KOG0783|consen 341 VATTRATV-CLLQNNSIIAFADYNQ 364 (1267)
T ss_pred EecCccEE-EEecCCcEEEEecccc
Confidence 88888888 6666898888876444
No 6
>KOG0783|consensus
Probab=99.91 E-value=6.3e-24 Score=196.45 Aligned_cols=236 Identities=22% Similarity=0.220 Sum_probs=174.0
Q ss_pred CCCCCcceeeccCCceEEEecCCCcEEEEecCCCCcccCCCCCCccCceeeccccCCCEEEEeccCCceEEEeCCCCEEE
Q psy5940 6 NEEMRPIDHLIRDRKIDVSSNQFNEVYIWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCMDKFHSVFVSDDGRVWS 85 (278)
Q Consensus 6 ~~~~~~~~v~~~~~~~~i~l~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~ 85 (278)
.+|....+|+.+.-|. +++++.|+||++|.+.-|+||.|+......|..|+.+.+.++.+|++...|+++||++|-||+
T Consensus 174 ~Sg~~~~qV~l~kfHS-vfl~~kgqvY~cGhG~GGRlG~gdeq~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys 252 (1267)
T KOG0783|consen 174 TSGQLFSQVQLSKFHS-VFLTEKGQVYVCGHGAGGRLGFGDEQYNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYS 252 (1267)
T ss_pred hccHHHHHHHHhhcee-eEecCCCcEEEeccCCCCccCcCcccccccccccccccccceEEEEeecceeEEEeecceEEE
Confidence 4555566677776665 899999999999999999999999888999999999999999999999999999999999999
Q ss_pred EeCCCCCcCCCCCCCc-eeccEEee-----cCCCCCEEEEEEccCCCcEEEEEEcCCcEEEEeCCCccccCCCCCCCCCC
Q psy5940 86 CGHGQGGRLGLGSESS-VVSPKKLN-----FEKDKDKLGVAMASISQDHSVFLMLSGSVFVCGLNSFHQLGLSPPPSHIV 159 (278)
Q Consensus 86 ~G~n~~gqlg~~~~~~-~~~p~~i~-----~~~~~~i~~i~~~~~g~~~~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~ 159 (278)
||.|.++|||..+... ...|+.|. ... .|+.|++ |..|+++.|+. .||+||.|. ||||.+++...+.
T Consensus 253 ~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg~~--~iIgvaA---g~~hsVawt~~-~VY~wGlN~-GQlGi~~n~~~Vt 325 (1267)
T KOG0783|consen 253 WGLNGSHQLGLSNDELKKDDPIQITARRIKGFK--QIIGVAA---GKSHSVAWTDT-DVYSWGLNN-GQLGISDNISVVT 325 (1267)
T ss_pred eecCcccccCCcCchhhcCchhhhhhHhhcchh--hhhhhhc---ccceeeeeecc-eEEEecccC-ceecCCCCCceee
Confidence 9999999999875432 23444444 433 7888899 99999999987 599999997 9999998878888
Q ss_pred CCeeeccCCCCCCCCeEEEEccCCeEEEEEC-CcEEEeeCC-CcccCCCCCC-CCCCceeeceEeeecccCCCCcceEEE
Q psy5940 160 SPTPIPRSSLKSSQPLIGVCCGRFHSVVYSS-REVYTFGIH-AGQLGHSPVT-VSSASVIEPKVQATIIREDLPGFIFES 236 (278)
Q Consensus 160 ~p~~i~~~~~~~~~~i~~i~~g~~~~~~l~~-~~vy~wG~n-~gqlG~~~~~-~~~~~~~~P~~i~~~~~~~~~~~i~~i 236 (278)
.|+.+.. + ... |+.+.|....|+++.. +.+|.+-+- .-.+...... ......-.|-.... ..+.+.
T Consensus 326 ~Pr~l~~--~-~~~-v~~v~a~~~ATVc~~~~~~i~~~ady~~~k~~~n~~~lks~~V~gg~l~~~~-------~~~~k~ 394 (1267)
T KOG0783|consen 326 TPRRLAG--L-LSP-VIHVVATTRATVCLLQNNSIIAFADYNQVKLPFNVDFLKSLKVTGGPLSLTR-------FNVRKL 394 (1267)
T ss_pred cchhhcc--c-ccc-eEEEEecCccEEEEecCCcEEEEecccceecCcchhccceeEEecCccchhh-------hhhhhc
Confidence 8987643 1 223 9999999999999986 588888762 1222111100 00000000111111 113333
Q ss_pred eccCceEEEEecCCcCeEeecCCCC
Q psy5940 237 NRGTKHSFTAETSLGPEFGGGWTGK 261 (278)
Q Consensus 237 ~~G~~hs~~~lt~~g~v~~wG~ng~ 261 (278)
.+. ..-++++|..|+||.|=.+.+
T Consensus 395 ~a~-~~kll~lte~g~Vy~w~s~ns 418 (1267)
T KOG0783|consen 395 LAS-ENKLLVLTELGEVYEWDSKNS 418 (1267)
T ss_pred chh-hhheeeeccCCeEEEEecCCC
Confidence 333 333448999999999986554
No 7
>KOG1428|consensus
Probab=99.88 E-value=2.3e-21 Score=186.01 Aligned_cols=186 Identities=27% Similarity=0.373 Sum_probs=143.3
Q ss_pred cCCCEEEEeccCCceEEEeCCCCEEEEeCCCCCcCCCCCCCceeccEEeecCCCCCEEEEEEccCCCcEEEEEEcCCcEE
Q psy5940 60 KRASIKQVCMDKFHSVFVSDDGRVWSCGHGQGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVF 139 (278)
Q Consensus 60 ~~~~i~~v~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~~~~g~~~~~~lt~~G~v~ 139 (278)
+..+|+.|.+...-.-++.++|++|..|.-..- ....-..+..+++..|.+++. |..|.++++.+|+||
T Consensus 567 n~rKIv~v~~s~~VY~~vSenGkifM~G~~tm~--------~n~SSqmln~L~~~~isslAl---GKsH~~av~rNG~l~ 635 (3738)
T KOG1428|consen 567 NRRKIVHVCASGHVYGYVSENGKIFMGGLHTMR--------VNVSSQMLNGLDNVMISSLAL---GKSHGVAVTRNGHLF 635 (3738)
T ss_pred CcceeEEEeeeeEEEEEEccCCeEEeecceeEE--------ecchHHHhhccccceeehhhc---cccceeEEEeCCeEE
Confidence 445899997777767789999999998864321 001233556677788888899 999999999999999
Q ss_pred EEeCCCccccCCCCCCCC--------------------------------------------------------------
Q psy5940 140 VCGLNSFHQLGLSPPPSH-------------------------------------------------------------- 157 (278)
Q Consensus 140 ~~G~n~~gqlg~~~~~~~-------------------------------------------------------------- 157 (278)
+||.|..+|+|+-.+...
T Consensus 636 T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC~~~~RP~G~mC~CG~GES~ 715 (3738)
T KOG1428|consen 636 TWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSARGVACGRVPRPKGTMCHCGVGEST 715 (3738)
T ss_pred EEecCCcccccccccccccCCcccccceeecccCCccceeecCCcchhhhcccccccccccccCCCCCCcccccCCCccc
Confidence 999999999996431110
Q ss_pred ------------------------------------CCCCeeeccCCCCCCCCeEEEEccCCeEEEEECC-cEEEeeCC-
Q psy5940 158 ------------------------------------IVSPTPIPRSSLKSSQPLIGVCCGRFHSVVYSSR-EVYTFGIH- 199 (278)
Q Consensus 158 ------------------------------------~~~p~~i~~~~~~~~~~i~~i~~g~~~~~~l~~~-~vy~wG~n- 199 (278)
...|.++.+..-....++.+|+||..|+++|.++ +||+||+|
T Consensus 716 C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~~HtVlL~sd~~VfTFG~~~ 795 (3738)
T KOG1428|consen 716 CLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVSSVSCGNFHTVLLASDRRVFTFGSNC 795 (3738)
T ss_pred ceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcceeEEEEeccCceEEEEecCCcEEEecCCc
Confidence 0111122111111111489999999999999876 99999999
Q ss_pred CcccCCCCCCCCCCceeeceEeeecccCCCCcceEEEeccCceEEEEecCCcCeEeecCCCCccCC
Q psy5940 200 AGQLGHSPVTVSSASVIEPKVQATIIREDLPGFIFESNRGTKHSFTAETSLGPEFGGGWTGKKGKR 265 (278)
Q Consensus 200 ~gqlG~~~~~~~~~~~~~P~~i~~~~~~~~~~~i~~i~~G~~hs~~~lt~~g~v~~wG~ng~~~~~ 265 (278)
+||||+++ ......|+.+..+.+.- |++|++|.+|++ ++..||.||.+|..|+++++
T Consensus 796 HGQLG~GD----t~Sk~~Pq~V~~~~~t~----~vQVaAGSNHT~-l~~~DGsVFTFGaF~KGQL~ 852 (3738)
T KOG1428|consen 796 HGQLGVGD----TLSKNTPQQVILPSDTV----IVQVAAGSNHTI-LRANDGSVFTFGAFGKGQLA 852 (3738)
T ss_pred ccccCcCc----cccCCCcceEEcCCCCc----eEEEecCCCceE-EEecCCcEEEeccccCcccc
Confidence 69999999 77778999998887644 999999999999 89999999999999887775
No 8
>KOG1428|consensus
Probab=99.77 E-value=8e-18 Score=162.17 Aligned_cols=179 Identities=18% Similarity=0.264 Sum_probs=141.3
Q ss_pred CCCCCCcceeeccCCceEEEecCCCcEEEEecCCCCcccCCCCCC-ccCcee----------------------------
Q psy5940 5 DNEEMRPIDHLIRDRKIDVSSNQFNEVYIWGTNANYNLGTGSQQT-RDVPEL---------------------------- 55 (278)
Q Consensus 5 ~~~~~~~~~v~~~~~~~~i~l~~~g~v~~wG~n~~gqlG~~~~~~-~~~p~~---------------------------- 55 (278)
++++.-+.++++|..|. ++++.+|+||.||.|+.+|+|.-+... ...|..
T Consensus 609 ~L~~~~isslAlGKsH~-~av~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG 687 (3738)
T KOG1428|consen 609 GLDNVMISSLALGKSHG-VAVTRNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCG 687 (3738)
T ss_pred ccccceeehhhccccce-eEEEeCCeEEEEecCCcccccccccccccCCcccccceeecccCCccceeecCCcchhhhcc
Confidence 57788889999999999 888999999999999999998621111 011100
Q ss_pred ----------------------------------------------------------------------e---ccccCC
Q psy5940 56 ----------------------------------------------------------------------L---DSLKRA 62 (278)
Q Consensus 56 ----------------------------------------------------------------------i---~~~~~~ 62 (278)
+ +.+-+.
T Consensus 688 ~Cs~~GvaC~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdv 767 (3738)
T KOG1428|consen 688 LCSARGVACGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDV 767 (3738)
T ss_pred cccccccccccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcce
Confidence 0 002233
Q ss_pred CEEEEeccCCceEEEeCCCCEEEEeCCCCCcCCCCCCCceeccEEeecCCCCCEEEEEEccCCCcEEEEEEcCCcEEEEe
Q psy5940 63 SIKQVCMDKFHSVFVSDDGRVWSCGHGQGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCG 142 (278)
Q Consensus 63 ~i~~v~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~~~~g~~~~~~lt~~G~v~~~G 142 (278)
++.+|+||..|+++|.+|++||.+|.|.+||||.++......|+.+..+.+..|++|++ |.+|++++..+|.||+||
T Consensus 768 kv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~~~~t~~vQVaA---GSNHT~l~~~DGsVFTFG 844 (3738)
T KOG1428|consen 768 KVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLGVGDTLSKNTPQQVILPSDTVIVQVAA---GSNHTILRANDGSVFTFG 844 (3738)
T ss_pred eEEEEeccCceEEEEecCCcEEEecCCcccccCcCccccCCCcceEEcCCCCceEEEec---CCCceEEEecCCcEEEec
Confidence 89999999999999999999999999999999999999999999999998899999999 999999999999999999
Q ss_pred CCCccccCCCCCCCC--CCCCeeeccCCC-CCCCCeEEEEccCCeEEEE
Q psy5940 143 LNSFHQLGLSPPPSH--IVSPTPIPRSSL-KSSQPLIGVCCGRFHSVVY 188 (278)
Q Consensus 143 ~n~~gqlg~~~~~~~--~~~p~~i~~~~~-~~~~~i~~i~~g~~~~~~l 188 (278)
.-..|||+++...+. ...|.+++.+.. .+.. ...|.+..+.+++-
T Consensus 845 aF~KGQL~RP~~e~~~WNA~Pe~v~~~G~~f~~~-A~WIGAdGDss~i~ 892 (3738)
T KOG1428|consen 845 AFGKGQLARPAGEKAGWNAIPEKVSGFGPGFNAF-AGWIGADGDSSIIH 892 (3738)
T ss_pred cccCccccCccccccccccCCCcCCCCCcccccc-ceeeccCCCcceee
Confidence 999999998765433 566777764322 2223 55666665555443
No 9
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.36 E-value=9.4e-13 Score=84.11 Aligned_cols=50 Identities=30% Similarity=0.449 Sum_probs=46.9
Q ss_pred CCcEEEEecCCCCccc-CCCCCCccCceeeccccCCCEEEEeccCCceEEE
Q psy5940 28 FNEVYIWGTNANYNLG-TGSQQTRDVPELLDSLKRASIKQVCMDKFHSVFV 77 (278)
Q Consensus 28 ~g~v~~wG~n~~gqlG-~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~l 77 (278)
+|+||+||.|.+|||| .++......|.+|+.+.+.+|++|+||..|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6999999999999999 7777788999999999989999999999999987
No 10
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.33 E-value=2e-12 Score=82.59 Aligned_cols=50 Identities=38% Similarity=0.582 Sum_probs=46.7
Q ss_pred CCCEEEEeCCCCCcCC-CCCCCceeccEEeecCCCCCEEEEEEccCCCcEEEEE
Q psy5940 80 DGRVWSCGHGQGGRLG-LGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFL 132 (278)
Q Consensus 80 ~g~v~~~G~n~~gqlg-~~~~~~~~~p~~i~~~~~~~i~~i~~~~~g~~~~~~l 132 (278)
||+||+||.|.+|||| .........|++++.+...+|++|+| |.+|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~---G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVAC---GSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEE---ESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEe---CcceEEEC
Confidence 6899999999999999 77778888999999998889999999 99999987
No 11
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.19 E-value=2.5e-11 Score=68.16 Aligned_cols=30 Identities=23% Similarity=0.561 Sum_probs=26.1
Q ss_pred EEEEeccCCceEEEeCCCCEEEEeCCCCCc
Q psy5940 64 IKQVCMDKFHSVFVSDDGRVWSCGHGQGGR 93 (278)
Q Consensus 64 i~~v~~g~~~~~~lt~~g~v~~~G~n~~gq 93 (278)
|++|+||.+|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999997
No 12
>KOG0941|consensus
Probab=99.18 E-value=1.2e-13 Score=129.52 Aligned_cols=142 Identities=27% Similarity=0.342 Sum_probs=116.6
Q ss_pred ceeeccccCCCEEEEeccCCceEEEeCCCCEEEEeCCCCCcCCCCCCCceeccEEeecCCCCCEEEEEEccCCCcEEEEE
Q psy5940 53 PELLDSLKRASIKQVCMDKFHSVFVSDDGRVWSCGHGQGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFL 132 (278)
Q Consensus 53 p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~~~~g~~~~~~l 132 (278)
|..+..+.-.+|.+++||.+|.++++..|++|.||.|.+||+|.+.......|.+++++.+.+.++|++ |.+|++++
T Consensus 5 ~~~~~~l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~---g~~hs~~l 81 (850)
T KOG0941|consen 5 PRLVLILNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSA---GEAHSFAL 81 (850)
T ss_pred hHHHHHHhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhc---CCCcchhh
Confidence 444444455589999999999999999999999999999999998554444599999999999999999 99988777
Q ss_pred Ec-------CCcEEEEeCCCccccCCCCCCCCCCCCeeeccCCCCCCCCeEEEEccCCeEEEEEC--CcEEEeeCCC-c
Q psy5940 133 ML-------SGSVFVCGLNSFHQLGLSPPPSHIVSPTPIPRSSLKSSQPLIGVCCGRFHSVVYSS--REVYTFGIHA-G 201 (278)
Q Consensus 133 t~-------~G~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~~~~i~~i~~g~~~~~~l~~--~~vy~wG~n~-g 201 (278)
.. +|.++.+|....+|+|++.. .....|..+. .+-+.. +..|+|+..|+++... ++.|.+|.+. |
T Consensus 82 S~~~~~lt~e~~~fs~Ga~~~~q~~h~~~-~~~~~~~~v~--e~i~~~-~t~ia~~~~ht~a~v~~l~qsf~~~~~~sG 156 (850)
T KOG0941|consen 82 SSHTVLLTDEGKVFSFGAGSTGQLGHSLT-ENEVLPLLVL--ELIGSR-VTRIACVRGHTLAIVPRLGQSFSFGKGASG 156 (850)
T ss_pred hhchhhcchhccccccCCccccccccccc-ccccccHHHH--HHHhhh-hHHHHHHHHHHHhhhhhhcceeecccCCCC
Confidence 66 99999999999999999543 4445555544 345556 9999999999999875 5999999973 5
No 13
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.17 E-value=5.1e-11 Score=66.88 Aligned_cols=30 Identities=27% Similarity=0.393 Sum_probs=25.7
Q ss_pred EEEEEEccCCCcEEEEEEcCCcEEEEeCCCccc
Q psy5940 116 KLGVAMASISQDHSVFLMLSGSVFVCGLNSFHQ 148 (278)
Q Consensus 116 i~~i~~~~~g~~~~~~lt~~G~v~~~G~n~~gq 148 (278)
|++|+| |.+|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~---G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIAC---GGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEE---ESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEe---cCCEEEEEEcCCCEEEEcCCcCCC
Confidence 678999 999999999999999999999998
No 14
>KOG0941|consensus
Probab=98.87 E-value=4.4e-11 Score=112.66 Aligned_cols=138 Identities=23% Similarity=0.301 Sum_probs=117.2
Q ss_pred CCCCCcceeeccCCceEEEecCCCcEEEEecCCCCcccCCCCCCccCceeeccccCCCEEEEeccCCceEEEeC------
Q psy5940 6 NEEMRPIDHLIRDRKIDVSSNQFNEVYIWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCMDKFHSVFVSD------ 79 (278)
Q Consensus 6 ~~~~~~~~v~~~~~~~~i~l~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~------ 79 (278)
+....+.++.||+.|+ ++++..|++++||.|.+||+|.+.......|.+++.+.+.+..+|++|..|++++..
T Consensus 11 l~~k~~lq~~cGn~hc-lal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS~~~~~lt 89 (850)
T KOG0941|consen 11 LNYKHILQVGCGNNHC-LALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALSSHTVLLT 89 (850)
T ss_pred HhhhhhhhhccccHHH-HhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhhhchhhcc
Confidence 4556788999999999 888999999999999999999984433334999999999999999999999887765
Q ss_pred -CCCEEEEeCCCCCcCCCCCCCceeccEEeecCCCCCEEEEEEccCCCcEEEEE-EcCCcEEEEeCCCcc
Q psy5940 80 -DGRVWSCGHGQGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFL-MLSGSVFVCGLNSFH 147 (278)
Q Consensus 80 -~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~~~~g~~~~~~l-t~~G~v~~~G~n~~g 147 (278)
+|.++.+|....||+|+........|..+..+-+..+.+|+| +-.|+++. ..-|++|.+|.+..|
T Consensus 90 ~e~~~fs~Ga~~~~q~~h~~~~~~~~~~~v~e~i~~~~t~ia~---~~~ht~a~v~~l~qsf~~~~~~sG 156 (850)
T KOG0941|consen 90 DEGKVFSFGAGSTGQLGHSLTENEVLPLLVLELIGSRVTRIAC---VRGHTLAIVPRLGQSFSFGKGASG 156 (850)
T ss_pred hhccccccCCcccccccccccccccccHHHHHHHhhhhHHHHH---HHHHHHhhhhhhcceeecccCCCC
Confidence 999999999999999997666667777776666789999999 99888754 456889999987776
No 15
>KOG0315|consensus
Probab=91.63 E-value=7.7 Score=32.97 Aligned_cols=71 Identities=11% Similarity=0.105 Sum_probs=38.6
Q ss_pred CEEEEeccC--CceEEEeCCCCEEEEeCCCCCcCCCCCCCceeccEEeecCCCCCEEEEEEccCCCcEEEEEEcCCcEEE
Q psy5940 63 SIKQVCMDK--FHSVFVSDDGRVWSCGHGQGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFV 140 (278)
Q Consensus 63 ~i~~v~~g~--~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~~~~g~~~~~~lt~~G~v~~ 140 (278)
.|..|..-. .+.+.=+++|.|+.|-.... .-... +++.. ...|.+++. .--....++.++.|++|+
T Consensus 126 pVn~vvlhpnQteLis~dqsg~irvWDl~~~------~c~~~----liPe~-~~~i~sl~v-~~dgsml~a~nnkG~cyv 193 (311)
T KOG0315|consen 126 PVNTVVLHPNQTELISGDQSGNIRVWDLGEN------SCTHE----LIPED-DTSIQSLTV-MPDGSMLAAANNKGNCYV 193 (311)
T ss_pred CcceEEecCCcceEEeecCCCcEEEEEccCC------ccccc----cCCCC-CcceeeEEE-cCCCcEEEEecCCccEEE
Confidence 444444444 44455577899999964221 11111 12211 234555544 003446678899999999
Q ss_pred EeCCC
Q psy5940 141 CGLNS 145 (278)
Q Consensus 141 ~G~n~ 145 (278)
|-.-.
T Consensus 194 W~l~~ 198 (311)
T KOG0315|consen 194 WRLLN 198 (311)
T ss_pred EEccC
Confidence 96543
No 16
>KOG3669|consensus
Probab=89.17 E-value=7.6 Score=36.77 Aligned_cols=106 Identities=14% Similarity=0.134 Sum_probs=67.3
Q ss_pred ccCCceEEEeCCCCEEEEeCCCCCcCCCCCCCcee-ccEEeecCCCCCEEEEEEccCCC-cEEEEEEcCCcEE-EEeCCC
Q psy5940 69 MDKFHSVFVSDDGRVWSCGHGQGGRLGLGSESSVV-SPKKLNFEKDKDKLGVAMASISQ-DHSVFLMLSGSVF-VCGLNS 145 (278)
Q Consensus 69 ~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~-~p~~i~~~~~~~i~~i~~~~~g~-~~~~~lt~~G~v~-~~G~n~ 145 (278)
.|.....+|..+|.+|. +-|.......- ..+.+... .++.+|++ |. .-..+++.+|.|| =-|-.+
T Consensus 190 ~g~~~awAI~s~Gd~y~-------RtGvs~~~P~GraW~~i~~~--t~L~qISa---gPtg~VwAvt~nG~vf~R~GVsR 257 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYL-------RTGVSVDRPCGRAWKVICPY--TDLSQISA---GPTGVVWAVTENGAVFYREGVSR 257 (705)
T ss_pred CCceEEEEEecCCcEEE-------eccccCCCCCCceeeecCCC--CccceEee---cCcceEEEEeeCCcEEEEecccc
Confidence 34455567777777774 12222222111 22223222 26889999 98 6667999999975 467777
Q ss_pred ccccCCCCCCCCCCCCeeeccCCCCCCCCeEEEEccCCeEEEEECC-cEEEe
Q psy5940 146 FHQLGLSPPPSHIVSPTPIPRSSLKSSQPLIGVCCGRFHSVVYSSR-EVYTF 196 (278)
Q Consensus 146 ~gqlg~~~~~~~~~~p~~i~~~~~~~~~~i~~i~~g~~~~~~l~~~-~vy~w 196 (278)
..+.|..-. .+..|+... . ++.|+.|....-||+++ ++|+=
T Consensus 258 qNp~GdsWk--dI~tP~~a~-------~-~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 258 QNPEGDSWK--DIVTPRQAL-------E-PVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred cCCCCchhh--hccCccccc-------c-eEEEEeccceEEEEecCCcEEEE
Confidence 777776543 445555443 2 88999999999999975 77764
No 17
>KOG3669|consensus
Probab=88.60 E-value=5.6 Score=37.62 Aligned_cols=70 Identities=14% Similarity=0.219 Sum_probs=50.4
Q ss_pred CEEEEeccC-CceEEEeCCCCEE-EEeCCCCCcCCCCCCCceeccEEeecCCCCCEEEEEEccCCCcEEEEEEcCCcEEE
Q psy5940 63 SIKQVCMDK-FHSVFVSDDGRVW-SCGHGQGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFV 140 (278)
Q Consensus 63 ~i~~v~~g~-~~~~~lt~~g~v~-~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~~~~g~~~~~~lt~~G~v~~ 140 (278)
...+|++|. .-..+++++|+|| --|-..+.+.|..=. +..+|+.. ..++.|+. |....-+||.+|+||.
T Consensus 228 ~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp~GdsWk-dI~tP~~a-----~~~v~iSv---Gt~t~Waldndg~lwf 298 (705)
T KOG3669|consen 228 DLSQISAGPTGVVWAVTENGAVFYREGVSRQNPEGDSWK-DIVTPRQA-----LEPVCISV---GTQTLWALDNDGNLWF 298 (705)
T ss_pred ccceEeecCcceEEEEeeCCcEEEEecccccCCCCchhh-hccCcccc-----cceEEEEe---ccceEEEEecCCcEEE
Confidence 588999999 7778999999986 457666666554322 22233322 12778888 9999999999999986
Q ss_pred E
Q psy5940 141 C 141 (278)
Q Consensus 141 ~ 141 (278)
=
T Consensus 299 r 299 (705)
T KOG3669|consen 299 R 299 (705)
T ss_pred E
Confidence 3
No 18
>KOG0291|consensus
Probab=87.48 E-value=31 Score=33.97 Aligned_cols=159 Identities=18% Similarity=0.193 Sum_probs=90.3
Q ss_pred ccC-CceEEEecCCCcEEEEecCCCCcccCCCCCCccCceeeccccC--CCEEEEeccCCceEEEe--CCCCEEEEeCCC
Q psy5940 16 IRD-RKIDVSSNQFNEVYIWGTNANYNLGTGSQQTRDVPELLDSLKR--ASIKQVCMDKFHSVFVS--DDGRVWSCGHGQ 90 (278)
Q Consensus 16 ~~~-~~~~i~l~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~--~~i~~v~~g~~~~~~lt--~~g~v~~~G~n~ 90 (278)
.++ +...++++..|.-.++|+..-|||..=+=..... |-..++ .+|..++-...-.++.| +||+|-.|-..+
T Consensus 305 is~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY---VlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~S 381 (893)
T KOG0291|consen 305 ISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY---VLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQS 381 (893)
T ss_pred cccceeeEEEecccCCEEEEcCCccceEEEEEeeccce---eeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccC
Confidence 443 4445668889999999999999988632211111 111111 15666666666554544 678888886543
Q ss_pred CCcCCCCCCCceeccEEeecCCCCCEEEEEEccCCCcEEEEEEcCCcEEEEeCCCccccCCCCCCCCCCCCeeeccCCCC
Q psy5940 91 GGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCGLNSFHQLGLSPPPSHIVSPTPIPRSSLK 170 (278)
Q Consensus 91 ~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~~~~g~~~~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~ 170 (278)
.-. ..++... ......++.+. -.+..+...-||.|-+|-...|--. .....|.++.+.
T Consensus 382 gfC--------~vTFteH--ts~Vt~v~f~~---~g~~llssSLDGtVRAwDlkRYrNf------RTft~P~p~Qfs--- 439 (893)
T KOG0291|consen 382 GFC--------FVTFTEH--TSGVTAVQFTA---RGNVLLSSSLDGTVRAWDLKRYRNF------RTFTSPEPIQFS--- 439 (893)
T ss_pred ceE--------EEEeccC--CCceEEEEEEe---cCCEEEEeecCCeEEeeeeccccee------eeecCCCceeee---
Confidence 211 1122222 22445666777 8888888899999999987765322 112334444321
Q ss_pred CCCCeEEEEccCCeEEEEECC--cEEEeeCCCccc
Q psy5940 171 SSQPLIGVCCGRFHSVVYSSR--EVYTFGIHAGQL 203 (278)
Q Consensus 171 ~~~~i~~i~~g~~~~~~l~~~--~vy~wG~n~gql 203 (278)
.+.+-....-.+|=+.+ ++|+|-.-.|||
T Consensus 440 ----cvavD~sGelV~AG~~d~F~IfvWS~qTGql 470 (893)
T KOG0291|consen 440 ----CVAVDPSGELVCAGAQDSFEIFVWSVQTGQL 470 (893)
T ss_pred ----EEEEcCCCCEEEeeccceEEEEEEEeecCee
Confidence 33333333333333434 889998766776
No 19
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=85.13 E-value=7.6 Score=32.40 Aligned_cols=30 Identities=13% Similarity=0.095 Sum_probs=25.5
Q ss_pred CCCEEEEEEccCCCcEEEEEEcCCcEEEEeCCC
Q psy5940 113 DKDKLGVAMASISQDHSVFLMLSGSVFVCGLNS 145 (278)
Q Consensus 113 ~~~i~~i~~~~~g~~~~~~lt~~G~v~~~G~n~ 145 (278)
+.++..+.| ..++.++||++|.+|+|--..
T Consensus 12 gs~~~~l~~---~~~~Ll~iT~~G~l~vWnl~~ 41 (219)
T PF07569_consen 12 GSPVSFLEC---NGSYLLAITSSGLLYVWNLKK 41 (219)
T ss_pred CCceEEEEe---CCCEEEEEeCCCeEEEEECCC
Confidence 447888889 999999999999999995543
No 20
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=81.84 E-value=20 Score=38.45 Aligned_cols=31 Identities=29% Similarity=0.187 Sum_probs=27.2
Q ss_pred CCCCcceEEEeccCceEEEEecCCcCeEeec
Q psy5940 227 EDLPGFIFESNRGTKHSFTAETSLGPEFGGG 257 (278)
Q Consensus 227 ~~~~~~i~~i~~G~~hs~~~lt~~g~v~~wG 257 (278)
..+++.|+.+++-..|.+.+++.+|++|..=
T Consensus 740 ~gl~G~ik~l~lD~~~nL~Alt~~G~Lf~~~ 770 (1774)
T PF11725_consen 740 PGLSGEIKDLALDEKQNLYALTSTGELFRLP 770 (1774)
T ss_pred CCCCcchhheeeccccceeEecCCCceeecC
Confidence 4567889999999999999999999999754
No 21
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=80.02 E-value=8.3 Score=32.15 Aligned_cols=29 Identities=3% Similarity=0.075 Sum_probs=25.0
Q ss_pred CCEEEEeccCCceEEEeCCCCEEEEeCCC
Q psy5940 62 ASIKQVCMDKFHSVFVSDDGRVWSCGHGQ 90 (278)
Q Consensus 62 ~~i~~v~~g~~~~~~lt~~g~v~~~G~n~ 90 (278)
.++..+.|...+.++||.+|.+|+|-...
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~ 41 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLKK 41 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECCC
Confidence 36778999999999999999999997543
No 22
>KOG0943|consensus
Probab=77.06 E-value=2.2 Score=43.82 Aligned_cols=127 Identities=9% Similarity=0.002 Sum_probs=81.0
Q ss_pred CCEEEEeccCCceEEEeCCCCEEEEeCCCCCcCCCC--CCCceeccEE-eecCCCCCEEEEEEccCCCcEEEEEEcCCcE
Q psy5940 62 ASIKQVCMDKFHSVFVSDDGRVWSCGHGQGGRLGLG--SESSVVSPKK-LNFEKDKDKLGVAMASISQDHSVFLMLSGSV 138 (278)
Q Consensus 62 ~~i~~v~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~--~~~~~~~p~~-i~~~~~~~i~~i~~~~~g~~~~~~lt~~G~v 138 (278)
.+++.|.+-.+..++|..+|++|.|-....--+-.+ -..+...|.. .-.+.+.+|+.+++ ..-..-++|++|+|
T Consensus 374 n~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSa---nniR~si~T~nghl 450 (3015)
T KOG0943|consen 374 NKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSA---NNIRASIATENGHL 450 (3015)
T ss_pred CeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeec---CceeeeeeecCCch
Confidence 388999999999999999999999987654322221 1122223422 22456889999999 88888999999999
Q ss_pred EEEeCCCccccCCCCCCCC-CCCCeeeccCCCCCCCCeEEEEccCCeEEEEEC-CcEEEeeCC
Q psy5940 139 FVCGLNSFHQLGLSPPPSH-IVSPTPIPRSSLKSSQPLIGVCCGRFHSVVYSS-REVYTFGIH 199 (278)
Q Consensus 139 ~~~G~n~~gqlg~~~~~~~-~~~p~~i~~~~~~~~~~i~~i~~g~~~~~~l~~-~~vy~wG~n 199 (278)
.+|=+- +|.+..-+- ...-+.+ ...+.. +++.-|...|+.+... +.+|-||--
T Consensus 451 asWlDE----cgagV~fkLa~ea~Tki---eed~~m-aVqd~~~adhlaAf~~dniihWcGiV 505 (3015)
T KOG0943|consen 451 ASWLDE----CGAGVAFKLAHEAQTKI---EEDGEM-AVQDHCCADHLAAFLEDNIIHWCGIV 505 (3015)
T ss_pred hhHHhh----hhhhhhhhhhhhhhhhh---hhhhHH-HHHHHHHHHHHHHHhhhceeeEEeee
Confidence 999331 222211000 0111222 234444 6666677777766665 589999874
No 23
>PHA03098 kelch-like protein; Provisional
Probab=76.75 E-value=29 Score=32.86 Aligned_cols=17 Identities=18% Similarity=0.247 Sum_probs=12.4
Q ss_pred CeEEEEECCcEEEeeCC
Q psy5940 183 FHSVVYSSREVYTFGIH 199 (278)
Q Consensus 183 ~~~~~l~~~~vy~wG~n 199 (278)
.++++..++++|++|-.
T Consensus 480 ~~~~~~~~~~iyv~GG~ 496 (534)
T PHA03098 480 NASLCIFNNKIYVVGGD 496 (534)
T ss_pred cceEEEECCEEEEEcCC
Confidence 45556668899999863
No 24
>KOG0646|consensus
Probab=76.35 E-value=60 Score=30.05 Aligned_cols=114 Identities=13% Similarity=0.166 Sum_probs=58.0
Q ss_pred CEEEEeccCCceEEE--eCCCCEEEEeCCCCCcCCCCCCCceeccEEeecCCCCCEEEEEEccCCCcEEEEEE--cCCcE
Q psy5940 63 SIKQVCMDKFHSVFV--SDDGRVWSCGHGQGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLM--LSGSV 138 (278)
Q Consensus 63 ~i~~v~~g~~~~~~l--t~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~~~~g~~~~~~lt--~~G~v 138 (278)
++..+++...-.+++ +..|++|.|=.++--.|.. . ......|..+.. ..+-+.++| .||.|
T Consensus 83 ~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v--------~----~aHYQ~ITcL~f---s~dgs~iiTgskDg~V 147 (476)
T KOG0646|consen 83 PVHALASSNLGYFLLAGTISGNLYLWELSSGILLNV--------L----SAHYQSITCLKF---SDDGSHIITGSKDGAV 147 (476)
T ss_pred ceeeeecCCCceEEEeecccCcEEEEEeccccHHHH--------H----HhhccceeEEEE---eCCCcEEEecCCCccE
Confidence 466666555444443 4789999997654321110 0 111234555555 555555554 57889
Q ss_pred EEEeCCCccccCCCCCCCCCCCCeeeccCCCCCCCCeEEEEccCC--eEEEEE--CC-cEEEeeC
Q psy5940 139 FVCGLNSFHQLGLSPPPSHIVSPTPIPRSSLKSSQPLIGVCCGRF--HSVVYS--SR-EVYTFGI 198 (278)
Q Consensus 139 ~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~~~~i~~i~~g~~--~~~~l~--~~-~vy~wG~ 198 (278)
.+|=..+. ....+...|.++..+...... |+++.+|.. .+.+++ .| .+-.|--
T Consensus 148 ~vW~l~~l------v~a~~~~~~~p~~~f~~Htls-ITDl~ig~Gg~~~rl~TaS~D~t~k~wdl 205 (476)
T KOG0646|consen 148 LVWLLTDL------VSADNDHSVKPLHIFSDHTLS-ITDLQIGSGGTNARLYTASEDRTIKLWDL 205 (476)
T ss_pred EEEEEEee------cccccCCCccceeeeccCcce-eEEEEecCCCccceEEEecCCceEEEEEe
Confidence 99943221 111122244444443444455 888777754 344444 34 5555543
No 25
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=74.43 E-value=7.7 Score=21.80 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=21.6
Q ss_pred CCEEEEeccC-CceEEEeCCCCEEEE
Q psy5940 62 ASIKQVCMDK-FHSVFVSDDGRVWSC 86 (278)
Q Consensus 62 ~~i~~v~~g~-~~~~~lt~~g~v~~~ 86 (278)
..+++|++|. ....+++.+|.+|..
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEEE
Confidence 3789999999 888899999999863
No 26
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=70.72 E-value=14 Score=19.77 Aligned_cols=25 Identities=8% Similarity=0.100 Sum_probs=20.3
Q ss_pred CCEEEEEEccCCCcEEEEEEcCCcEEEE
Q psy5940 114 KDKLGVAMASISQDHSVFLMLSGSVFVC 141 (278)
Q Consensus 114 ~~i~~i~~~~~g~~~~~~lt~~G~v~~~ 141 (278)
+.|..|++ |..+.++.|+.+-|-.|
T Consensus 2 E~i~aia~---g~~~vavaTS~~~lRif 26 (27)
T PF12341_consen 2 EEIEAIAA---GDSWVAVATSAGYLRIF 26 (27)
T ss_pred ceEEEEEc---cCCEEEEEeCCCeEEec
Confidence 56778888 99999999998876543
No 27
>KOG0293|consensus
Probab=65.61 E-value=1.1e+02 Score=28.25 Aligned_cols=68 Identities=13% Similarity=0.121 Sum_probs=42.8
Q ss_pred eEEEEccCCeEEEEE--CC-cEEEeeCCCcccCCCCCCCCCCceeeceEeeecccCCCCcceEEEe-ccCceEEEEe-cC
Q psy5940 175 LIGVCCGRFHSVVYS--SR-EVYTFGIHAGQLGHSPVTVSSASVIEPKVQATIIREDLPGFIFESN-RGTKHSFTAE-TS 249 (278)
Q Consensus 175 i~~i~~g~~~~~~l~--~~-~vy~wG~n~gqlG~~~~~~~~~~~~~P~~i~~~~~~~~~~~i~~i~-~G~~hs~~~l-t~ 249 (278)
|.+++-..+.-++|. .+ ++..|-. ..++.+..........+|..-. .|.+-.+++- ++
T Consensus 398 its~~iS~d~k~~LvnL~~qei~LWDl-----------------~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSE 460 (519)
T KOG0293|consen 398 ITSFSISKDGKLALVNLQDQEIHLWDL-----------------EENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSE 460 (519)
T ss_pred eeEEEEcCCCcEEEEEcccCeeEEeec-----------------chhhHHHHhhcccccceEEEeccCCCCcceEEecCC
Confidence 888888877777776 34 9999944 1345555555544444444433 3444455333 57
Q ss_pred CcCeEeecCC
Q psy5940 250 LGPEFGGGWT 259 (278)
Q Consensus 250 ~g~v~~wG~n 259 (278)
|++||.|-+-
T Consensus 461 D~kvyIWhr~ 470 (519)
T KOG0293|consen 461 DSKVYIWHRI 470 (519)
T ss_pred CceEEEEEcc
Confidence 8899999873
No 28
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=65.17 E-value=1.5e+02 Score=29.56 Aligned_cols=119 Identities=13% Similarity=0.116 Sum_probs=65.4
Q ss_pred EEecCCCcEEEEecCCCCcccCCCCCCccCceeeccccCCCEEEEeccCC--ceEEEeCCCCEEEEeCCCCCcCCCCCCC
Q psy5940 23 VSSNQFNEVYIWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCMDKF--HSVFVSDDGRVWSCGHGQGGRLGLGSES 100 (278)
Q Consensus 23 i~l~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g~~--~~~~lt~~g~v~~~G~n~~gqlg~~~~~ 100 (278)
+++|++|.+|.+-.+.-- .|.+... ..-..+...++.+|+.+.+... +.+++|+.|..+-.-.+.+-....+...
T Consensus 540 llfTs~Gr~yrf~v~eIP-~GR~aGg--pV~~~L~L~~gE~Iv~~~~v~~~~~lLlaT~~GyGKrt~lse~~~~~RaGKg 616 (735)
T TIGR01062 540 VFIDSTGRSYALDPDNLP-SARGQGE--PLTGKLLLPIGATITNILMYSPNQLLLMASDAGYGFLCNFNDLIARNKAGKA 616 (735)
T ss_pred EEEECCCeEEEEEhHhcC-cCccCCc--eeEeeecCCCCCEEEEEEEecCCcEEEEEEcCCcEEEEEhHhccccCcCCeE
Confidence 567999999999765432 2321111 1111223345567888877654 4778889997776654443221111110
Q ss_pred ceeccEEeecCCCCCEEEEEEccCCC-cEEEEEEcCCcEEEEeCCCccccCC
Q psy5940 101 SVVSPKKLNFEKDKDKLGVAMASISQ-DHSVFLMLSGSVFVCGLNSFHQLGL 151 (278)
Q Consensus 101 ~~~~p~~i~~~~~~~i~~i~~~~~g~-~~~~~lt~~G~v~~~G~n~~gqlg~ 151 (278)
-..+. .+..++.+..+. +. .+.+++|++|++..+-.++..+++.
T Consensus 617 ----vi~Lk--~~d~lv~v~~v~-~~dd~V~liT~~GrlLrf~v~EIp~~gR 661 (735)
T TIGR01062 617 ----LINLP--ENASVIAPLPVN-GDSDMIAAITEAGRMLVFPIDDLPELSK 661 (735)
T ss_pred ----EEEeC--CCCEEEEEEEEc-CCCCEEEEEeCCCcEEEEEHHHCCccCC
Confidence 01111 223444332211 33 3678999999999997776655554
No 29
>KOG0289|consensus
Probab=62.63 E-value=1.3e+02 Score=27.83 Aligned_cols=65 Identities=11% Similarity=0.035 Sum_probs=43.4
Q ss_pred ceEEEecCCCcEEEEecCCCCcccCCCCCCccCceeeccccCC--CEEEEeccCCceEEE--eCCCCEEEEeC
Q psy5940 20 KIDVSSNQFNEVYIWGTNANYNLGTGSQQTRDVPELLDSLKRA--SIKQVCMDKFHSVFV--SDDGRVWSCGH 88 (278)
Q Consensus 20 ~~~i~l~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~--~i~~v~~g~~~~~~l--t~~g~v~~~G~ 88 (278)
.++.++..||-+|+-|. .+|++-+=+. ..+..+..+++. +|+.|+.+.+-.... .+|+.|..|-.
T Consensus 350 ~ts~~fHpDgLifgtgt-~d~~vkiwdl---ks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDL 418 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGT-PDGVVKIWDL---KSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDL 418 (506)
T ss_pred eEEeeEcCCceEEeccC-CCceEEEEEc---CCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEe
Confidence 44556778888888877 4566554332 334445555554 899999998776554 46788999974
No 30
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=62.02 E-value=10 Score=22.03 Aligned_cols=19 Identities=16% Similarity=0.469 Sum_probs=15.9
Q ss_pred cEEEEEEcCCcEEEEeCCC
Q psy5940 127 DHSVFLMLSGSVFVCGLNS 145 (278)
Q Consensus 127 ~~~~~lt~~G~v~~~G~n~ 145 (278)
-+.++++.+|++|+.|...
T Consensus 15 ~~~IavD~~GNiYv~G~T~ 33 (38)
T PF06739_consen 15 GNGIAVDSNGNIYVTGYTN 33 (38)
T ss_pred EEEEEECCCCCEEEEEeec
Confidence 3678999999999999754
No 31
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=60.79 E-value=24 Score=37.83 Aligned_cols=114 Identities=10% Similarity=0.085 Sum_probs=68.2
Q ss_pred CCCCCcceeeccCCceEEEecCCCcEEEEecCCCCcccCCCCCCccCceeecccc-CCCEEEEeccCCce-EEEeCCCCE
Q psy5940 6 NEEMRPIDHLIRDRKIDVSSNQFNEVYIWGTNANYNLGTGSQQTRDVPELLDSLK-RASIKQVCMDKFHS-VFVSDDGRV 83 (278)
Q Consensus 6 ~~~~~~~~v~~~~~~~~i~l~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~-~~~i~~v~~g~~~~-~~lt~~g~v 83 (278)
++...+.-+++-+....|+|++.|++-..- ..|. |.++.... .-.|+++++-..|. +++|.+|+|
T Consensus 700 l~~~~i~a~Avv~~~~fvald~qg~lt~h~--k~g~-----------p~~l~~~gl~G~ik~l~lD~~~nL~Alt~~G~L 766 (1774)
T PF11725_consen 700 LEDRVITAFAVVNDNKFVALDDQGDLTAHQ--KPGR-----------PVPLSRPGLSGEIKDLALDEKQNLYALTSTGEL 766 (1774)
T ss_pred CCcCcceeEEEEcCCceEEeccCCcccccc--CCCC-----------CccCCCCCCCcchhheeeccccceeEecCCCce
Confidence 344444444543333336778888776652 2221 44443211 13899999999865 569999999
Q ss_pred EEEeCCCCCcCCCCCCCceeccEEeecCCCCCEEEEEEccCCCcEEEEEEcCC
Q psy5940 84 WSCGHGQGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSG 136 (278)
Q Consensus 84 ~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~~~~g~~~~~~lt~~G 136 (278)
|+--+-.+...-.++ .....+.++..+.+.++..+.. ..+|.+.+.-++
T Consensus 767 f~~~k~~WQ~~~~~~-~~~~~W~~v~lP~~~~v~~l~~---~~~~~l~~~~~d 815 (1774)
T PF11725_consen 767 FRLPKEAWQGNAEGD-QMAAKWQKVALPDEQPVKSLRT---NDDNHLSAQIED 815 (1774)
T ss_pred eecCHHHhhCcccCC-ccccCceeccCCCCCchhhhhc---CCCCceEEEecC
Confidence 976544332211111 1123455565566789999988 999888877766
No 32
>PHA02713 hypothetical protein; Provisional
Probab=59.15 E-value=1.5e+02 Score=28.53 Aligned_cols=18 Identities=0% Similarity=-0.020 Sum_probs=13.4
Q ss_pred CeEEEEECCcEEEeeCCC
Q psy5940 183 FHSVVYSSREVYTFGIHA 200 (278)
Q Consensus 183 ~~~~~l~~~~vy~wG~n~ 200 (278)
.+.++.-+|+||+.|-..
T Consensus 505 ~~~~~~~~~~iyv~Gg~~ 522 (557)
T PHA02713 505 ALHTILHDNTIMMLHCYE 522 (557)
T ss_pred cceeEEECCEEEEEeeec
Confidence 456666688999998743
No 33
>KOG0943|consensus
Probab=54.88 E-value=8.6 Score=39.82 Aligned_cols=81 Identities=7% Similarity=0.085 Sum_probs=55.6
Q ss_pred CCCEEEEEEccCCCcEEEEEEcCCcEEEEeCCCccccCCCCCC-CCCCCCeeeccCCCCCCCCeEEEEccCCeEEEEEC-
Q psy5940 113 DKDKLGVAMASISQDHSVFLMLSGSVFVCGLNSFHQLGLSPPP-SHIVSPTPIPRSSLKSSQPLIGVCCGRFHSVVYSS- 190 (278)
Q Consensus 113 ~~~i~~i~~~~~g~~~~~~lt~~G~v~~~G~n~~gqlg~~~~~-~~~~~p~~i~~~~~~~~~~i~~i~~g~~~~~~l~~- 190 (278)
..++..|.+ -++-.++|..+|++|.|-+.+.-.+...-.. +.-..|.-- +..+.+.+ |+.+++..-..-++|+
T Consensus 373 an~~I~I~A---~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a-~iG~hge~-ii~lSanniR~si~T~n 447 (3015)
T KOG0943|consen 373 ANKFICIGA---LSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAA-FIGLHGEK-IILLSANNIRASIATEN 447 (3015)
T ss_pred CCeeEEeeh---hHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccc-eecccCCe-eEEeecCceeeeeeecC
Confidence 567888888 8888899999999999988776544332111 222333322 22456667 9999998777666765
Q ss_pred CcEEEeeC
Q psy5940 191 REVYTFGI 198 (278)
Q Consensus 191 ~~vy~wG~ 198 (278)
|.|-+|=+
T Consensus 448 ghlasWlD 455 (3015)
T KOG0943|consen 448 GHLASWLD 455 (3015)
T ss_pred CchhhHHh
Confidence 69999955
No 34
>PHA03098 kelch-like protein; Provisional
Probab=52.73 E-value=1.6e+02 Score=27.92 Aligned_cols=17 Identities=18% Similarity=0.331 Sum_probs=12.8
Q ss_pred CeEEEEECCcEEEeeCC
Q psy5940 183 FHSVVYSSREVYTFGIH 199 (278)
Q Consensus 183 ~~~~~l~~~~vy~wG~n 199 (278)
.|+++..++.+|++|-.
T Consensus 430 ~~~~~~~~~~iyv~GG~ 446 (534)
T PHA03098 430 GGCAIYHDGKIYVIGGI 446 (534)
T ss_pred CceEEEECCEEEEECCc
Confidence 45666668899999963
No 35
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=50.44 E-value=21 Score=24.63 Aligned_cols=34 Identities=21% Similarity=0.181 Sum_probs=26.3
Q ss_pred CCCEEEEecc-CCceEEEeCCCCEEEEeCCCCCcC
Q psy5940 61 RASIKQVCMD-KFHSVFVSDDGRVWSCGHGQGGRL 94 (278)
Q Consensus 61 ~~~i~~v~~g-~~~~~~lt~~g~v~~~G~n~~gql 94 (278)
+..=..|+|. ....++|++||.+|.-+.-+.|++
T Consensus 15 ~~tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~a 49 (81)
T PF03785_consen 15 GQTSISVSCDVPGSYVALSQDGDLYGKAIVNSGNA 49 (81)
T ss_dssp T-SEEEEEESSTT-EEEEEETTEEEEEEE-BTTEE
T ss_pred cccEEEEEecCCCcEEEEecCCEEEEEEEecCceE
Confidence 3456789999 899999999999999997667764
No 36
>KOG0315|consensus
Probab=50.44 E-value=1.6e+02 Score=25.24 Aligned_cols=143 Identities=14% Similarity=0.093 Sum_probs=69.8
Q ss_pred ecCCCcEEEEecCCCCcccCCCCCCccCceeeccccCC--CEEEEe--ccCCceEEEeCCCCEEEEeCCCCCcCCCCCCC
Q psy5940 25 SNQFNEVYIWGTNANYNLGTGSQQTRDVPELLDSLKRA--SIKQVC--MDKFHSVFVSDDGRVWSCGHGQGGRLGLGSES 100 (278)
Q Consensus 25 l~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~--~i~~v~--~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~ 100 (278)
+|.+++..+-+.|.+-+|-.- ....|.|+..+... +|..|. |-....+-=.+||.+-.|-.-. +..
T Consensus 48 iTpdk~~LAaa~~qhvRlyD~---~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~---~~~---- 117 (311)
T KOG0315|consen 48 ITPDKKDLAAAGNQHVRLYDL---NSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS---LSC---- 117 (311)
T ss_pred EcCCcchhhhccCCeeEEEEc---cCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccC---ccc----
Confidence 666666666555554443221 11233344433332 455544 3333333345778888876432 111
Q ss_pred ceeccEEeecCCCCCEEEEEEccCCCcEEEEEEcCCcEEEEeCCCccccCCCCCCCCCCCCeeeccCCCCCCCCeEEEEc
Q psy5940 101 SVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCGLNSFHQLGLSPPPSHIVSPTPIPRSSLKSSQPLIGVCC 180 (278)
Q Consensus 101 ~~~~p~~i~~~~~~~i~~i~~~~~g~~~~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~~~~i~~i~~ 180 (278)
++..... .+|..|.. -..+.+.+.-+.+|+|++|-.... ++ .....|. .... |.+++.
T Consensus 118 ----qR~~~~~--spVn~vvl-hpnQteLis~dqsg~irvWDl~~~-~c------~~~liPe-------~~~~-i~sl~v 175 (311)
T KOG0315|consen 118 ----QRNYQHN--SPVNTVVL-HPNQTELISGDQSGNIRVWDLGEN-SC------THELIPE-------DDTS-IQSLTV 175 (311)
T ss_pred ----chhccCC--CCcceEEe-cCCcceEEeecCCCcEEEEEccCC-cc------ccccCCC-------CCcc-eeeEEE
Confidence 1111111 23333322 115567777788999999944221 00 1111221 1223 777777
Q ss_pred cCCeEEEE--EC-CcEEEeeCC
Q psy5940 181 GRFHSVVY--SS-REVYTFGIH 199 (278)
Q Consensus 181 g~~~~~~l--~~-~~vy~wG~n 199 (278)
..+-++.. .+ |++|+|-..
T Consensus 176 ~~dgsml~a~nnkG~cyvW~l~ 197 (311)
T KOG0315|consen 176 MPDGSMLAAANNKGNCYVWRLL 197 (311)
T ss_pred cCCCcEEEEecCCccEEEEEcc
Confidence 76555444 33 699999774
No 37
>KOG1034|consensus
Probab=48.51 E-value=52 Score=29.23 Aligned_cols=56 Identities=29% Similarity=0.557 Sum_probs=38.3
Q ss_pred ecCCCcEEEEecCCCCcccCCCCCCccCceeeccccCCCEEEEeccCCce--EEEeCCCCEEEEeC
Q psy5940 25 SNQFNEVYIWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCMDKFHS--VFVSDDGRVWSCGH 88 (278)
Q Consensus 25 l~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~--~~lt~~g~v~~~G~ 88 (278)
..+.|+||.|-.-. ..+...++......+..|+|.+....-+ ++.++|+.||.|-.
T Consensus 325 gnq~g~v~vwdL~~--------~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 325 GNQSGKVYVWDLDN--------NEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred ccCCCcEEEEECCC--------CCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 57788999995421 1122455556666667888888777665 45678999999963
No 38
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=48.48 E-value=3.1e+02 Score=27.83 Aligned_cols=135 Identities=10% Similarity=0.054 Sum_probs=67.2
Q ss_pred CCccee-eccCCceEEEecCCCcEEEEecCCCCcccCCCCCCccCceeeccccCCCEEEEecc-----CCceEEEeCCCC
Q psy5940 9 MRPIDH-LIRDRKIDVSSNQFNEVYIWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCMD-----KFHSVFVSDDGR 82 (278)
Q Consensus 9 ~~~~~v-~~~~~~~~i~l~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g-----~~~~~~lt~~g~ 82 (278)
..+..+ .|.....-+++|+.|++|..-...--..+... ........+...++.+|+.+.+- ....+++|++|.
T Consensus 535 D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~IP~~~r~~-~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~Gy 613 (800)
T TIGR01063 535 DFIEQLLVASTHDYLLFFTNRGKVYWLKVYQIPEASRTA-KGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGV 613 (800)
T ss_pred CeeEEEEEecCCCeEEEEeCCCcEEEEEhhhCcCCCcCC-CCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCE
Confidence 334443 34444433567999999998443322221110 00111111222345577776652 234678899997
Q ss_pred EEEEeCCCCCcCCCCCCCceeccEEeecCCCCCEEEEEEccCCCcEEEEEEcCCcEEEEeCCCccccCC
Q psy5940 83 VWSCGHGQGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCGLNSFHQLGL 151 (278)
Q Consensus 83 v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~~~~g~~~~~~lt~~G~v~~~G~n~~gqlg~ 151 (278)
+--.-.+.+-.... .--..+..-.+..++.+.... ...+.+++|++|++|.+-..+....+.
T Consensus 614 iKRi~l~~~~~~~r------~G~~aiklke~D~lv~v~~~~-~~d~lll~Ts~Gr~~r~~v~eIp~~gr 675 (800)
T TIGR01063 614 VKKTSLTEFSNIRS------NGIIAIKLDDGDELISVRLTS-GDDEVMLGSKNGKAVRFPEEDVRPMGR 675 (800)
T ss_pred EEEEEhHHhhhhcc------CCcccccCCCCCEEEEEEEeC-CCCEEEEEECCCcEEEEEhhhcCCcCC
Confidence 77654333211000 000001111234555544311 345789999999999997665544443
No 39
>KOG1900|consensus
Probab=47.05 E-value=2.4e+02 Score=29.94 Aligned_cols=163 Identities=10% Similarity=0.144 Sum_probs=75.7
Q ss_pred ecCCCcEEEEecCCCCcccCCCCCC-c-cCceeeccccCCCEEEEeccCCceEEEeCCCCEEEEeCCCC-CcCCCCCCCc
Q psy5940 25 SNQFNEVYIWGTNANYNLGTGSQQT-R-DVPELLDSLKRASIKQVCMDKFHSVFVSDDGRVWSCGHGQG-GRLGLGSESS 101 (278)
Q Consensus 25 l~~~g~v~~wG~n~~gqlG~~~~~~-~-~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~n~~-gqlg~~~~~~ 101 (278)
+|.|+++|.|-.+..+++-.=+... . ..-..+..-++..+-.| .|.++|.+.-+|+..|-... .+.+......
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~I----qhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~ 170 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEI----QHLLVVATPVEIVILGVSFDEFTGELSIFNT 170 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhh----heeEEecccceEEEEEEEeccccCccccccc
Confidence 7899999999998877765422221 1 11111111122222222 47788888888888774321 1111111111
Q ss_pred eeccEEeecCCCCCEEEEEEccCCCcEEEEEE-cCCcEEEE----eCCCccc----cCCCCCCCCCCCCeeeccCCCCCC
Q psy5940 102 VVSPKKLNFEKDKDKLGVAMASISQDHSVFLM-LSGSVFVC----GLNSFHQ----LGLSPPPSHIVSPTPIPRSSLKSS 172 (278)
Q Consensus 102 ~~~p~~i~~~~~~~i~~i~~~~~g~~~~~~lt-~~G~v~~~----G~n~~gq----lg~~~~~~~~~~p~~i~~~~~~~~ 172 (278)
. -.|.. ++..+..|.+ -.+--++++ .+|.||-. +++=+++ .-++...-....|+-+..+.....
T Consensus 171 ~---~~i~~-dg~~V~~I~~---t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~d 243 (1311)
T KOG1900|consen 171 S---FKISV-DGVSVNCITY---TENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKD 243 (1311)
T ss_pred c---eeeec-CCceEEEEEe---ccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCC
Confidence 1 12211 2334444444 444334443 44444322 1111111 111111112344553333322334
Q ss_pred CCeEEEEccCCeEEEEE--C-C--cEEEeeCC
Q psy5940 173 QPLIGVCCGRFHSVVYS--S-R--EVYTFGIH 199 (278)
Q Consensus 173 ~~i~~i~~g~~~~~~l~--~-~--~vy~wG~n 199 (278)
. |.+|+-.....+.++ + + ++|.-|.|
T Consensus 244 p-I~qi~ID~SR~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 244 P-IRQITIDNSRNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred c-ceeeEeccccceeeeeccCceEEEEEccCC
Confidence 5 999999988877765 3 5 67777765
No 40
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=45.31 E-value=1.3e+02 Score=27.30 Aligned_cols=127 Identities=11% Similarity=0.146 Sum_probs=59.2
Q ss_pred ccCCCCCCcce-eeccC-CceEEEecCCCc-EEEEecCCCCcccCCCCCCccCceeeccccCCCEEEEeccCC-ceEEEe
Q psy5940 3 VMDNEEMRPID-HLIRD-RKIDVSSNQFNE-VYIWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCMDKF-HSVFVS 78 (278)
Q Consensus 3 ~~~~~~~~~~~-v~~~~-~~~~i~l~~~g~-v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g~~-~~~~lt 78 (278)
+.|.+...++. |..+. .|..+..+.+|+ +|+.+ ..|.+. .+.......+..|..|.. +.++++
T Consensus 20 viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~--rdg~vs-----------viD~~~~~~v~~i~~G~~~~~i~~s 86 (369)
T PF02239_consen 20 VIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVAN--RDGTVS-----------VIDLATGKVVATIKVGGNPRGIAVS 86 (369)
T ss_dssp EEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEE--TTSEEE-----------EEETTSSSEEEEEE-SSEEEEEEE-
T ss_pred EEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEc--CCCeEE-----------EEECCcccEEEEEecCCCcceEEEc
Confidence 45555544444 33433 456566677786 77764 345432 233334445777777764 457788
Q ss_pred CCCCEEEEeCCCCCcCCCCCCCceeccEEeecC------CCCCEEEEEEccCCCcEEEEEEcCCcEEEEe
Q psy5940 79 DDGRVWSCGHGQGGRLGLGSESSVVSPKKLNFE------KDKDKLGVAMASISQDHSVFLMLSGSVFVCG 142 (278)
Q Consensus 79 ~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~------~~~~i~~i~~~~~g~~~~~~lt~~G~v~~~G 142 (278)
.||+...-+....+++-.-+......-..|+.. ...++..|....-...+.+.|.+.|++|.--
T Consensus 87 ~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVd 156 (369)
T PF02239_consen 87 PDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVD 156 (369)
T ss_dssp -TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEE
Confidence 899866555444444332221111111112111 2335666654222333677778888888763
No 41
>KOG4441|consensus
Probab=44.01 E-value=3.1e+02 Score=26.54 Aligned_cols=16 Identities=25% Similarity=0.378 Sum_probs=12.1
Q ss_pred EEEcCCcEEEEeCCCc
Q psy5940 131 FLMLSGSVFVCGLNSF 146 (278)
Q Consensus 131 ~lt~~G~v~~~G~n~~ 146 (278)
+..-++.||+.|..+-
T Consensus 471 ~a~~~~~iYvvGG~~~ 486 (571)
T KOG4441|consen 471 VAVLNGKIYVVGGFDG 486 (571)
T ss_pred EEEECCEEEEECCccC
Confidence 5566789999987653
No 42
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=43.17 E-value=28 Score=20.88 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=12.6
Q ss_pred CcEEEEEEcCCcEEEEeCCC
Q psy5940 126 QDHSVFLMLSGSVFVCGLNS 145 (278)
Q Consensus 126 ~~~~~~lt~~G~v~~~G~n~ 145 (278)
..|++++..+++||.+|-..
T Consensus 3 ~~h~~~~~~~~~i~v~GG~~ 22 (49)
T PF13418_consen 3 YGHSAVSIGDNSIYVFGGRD 22 (49)
T ss_dssp BS-EEEEE-TTEEEEE--EE
T ss_pred ceEEEEEEeCCeEEEECCCC
Confidence 46888888789999998643
No 43
>PF13964 Kelch_6: Kelch motif
Probab=42.91 E-value=25 Score=21.26 Aligned_cols=19 Identities=32% Similarity=0.364 Sum_probs=15.4
Q ss_pred CCeEEEEECCcEEEeeCCC
Q psy5940 182 RFHSVVYSSREVYTFGIHA 200 (278)
Q Consensus 182 ~~~~~~l~~~~vy~wG~n~ 200 (278)
..|+++..+++||++|-..
T Consensus 3 ~~~s~v~~~~~iyv~GG~~ 21 (50)
T PF13964_consen 3 YGHSAVVVGGKIYVFGGYD 21 (50)
T ss_pred ccCEEEEECCEEEEECCCC
Confidence 4678888889999999853
No 44
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=42.30 E-value=1.5e+02 Score=25.99 Aligned_cols=102 Identities=13% Similarity=0.068 Sum_probs=53.4
Q ss_pred cCCceEEEecCCCcEEEEecCCCCcccCCCCCCccCceeeccccCCCEEEEeccCCceEEEeCCCCEEEEeCCC-CCcCC
Q psy5940 17 RDRKIDVSSNQFNEVYIWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCMDKFHSVFVSDDGRVWSCGHGQ-GGRLG 95 (278)
Q Consensus 17 ~~~~~~i~l~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~n~-~gqlg 95 (278)
|..-+.|++..+|..|..-... +.+-.+.+.. ..+..+. + .+.+-+.-.+.+++.+|+||..|.+- +|+|-
T Consensus 103 Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~--evt~f~l-p----~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLd 174 (353)
T COG4257 103 GASPHGIVVGPDGSAWITDTGL-AIGRLDPKTL--EVTRFPL-P----LEHADANLETAVFDPWGNLWFTGQIGAYGRLD 174 (353)
T ss_pred CCCCceEEECCCCCeeEecCcc-eeEEecCccc--ceEEeec-c----cccCCCcccceeeCCCccEEEeeccccceecC
Confidence 3444457789999999984432 2211111111 1111110 0 23344555677889999999998742 44432
Q ss_pred CCCCCceeccEEeecCCCCCEEEEEEccCCCcEEEEEEcCCcEEEE
Q psy5940 96 LGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVC 141 (278)
Q Consensus 96 ~~~~~~~~~p~~i~~~~~~~i~~i~~~~~g~~~~~~lt~~G~v~~~ 141 (278)
-....-...|.+ . . +.-+-++.|-+|+||.-
T Consensus 175 Pa~~~i~vfpaP----q--------G---~gpyGi~atpdGsvwya 205 (353)
T COG4257 175 PARNVISVFPAP----Q--------G---GGPYGICATPDGSVWYA 205 (353)
T ss_pred cccCceeeeccC----C--------C---CCCcceEECCCCcEEEE
Confidence 211111111111 1 2 45566788999999876
No 45
>PF13854 Kelch_5: Kelch motif
Probab=42.06 E-value=30 Score=20.22 Aligned_cols=18 Identities=33% Similarity=0.397 Sum_probs=14.9
Q ss_pred CCeEEEEECCcEEEeeCC
Q psy5940 182 RFHSVVYSSREVYTFGIH 199 (278)
Q Consensus 182 ~~~~~~l~~~~vy~wG~n 199 (278)
..|++++.++++|.||-.
T Consensus 6 ~~hs~~~~~~~iyi~GG~ 23 (42)
T PF13854_consen 6 YGHSAVVVGNNIYIFGGY 23 (42)
T ss_pred cceEEEEECCEEEEEcCc
Confidence 468888888899999974
No 46
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=41.22 E-value=1.6e+02 Score=26.83 Aligned_cols=61 Identities=15% Similarity=0.102 Sum_probs=42.9
Q ss_pred EEEEeccCCc---eEEEeCCCCEEEEeCCCCCcCCCCCCCceeccEEeecCCCCCEEEEEEccCCCcEEEEEEcCCcEEE
Q psy5940 64 IKQVCMDKFH---SVFVSDDGRVWSCGHGQGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFV 140 (278)
Q Consensus 64 i~~v~~g~~~---~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~~~~g~~~~~~lt~~G~v~~ 140 (278)
+..+.++..+ .+++..+|++..|..+ ..+.++. ....+.+|.. -.-...|++..|+||+
T Consensus 162 ~~~~~~~~~~~~~vl~i~~~g~l~~w~~~--------------~Wt~l~~-~~~~~~DIi~---~kGkfYAvD~~G~l~~ 223 (373)
T PLN03215 162 LVKVKEGDNHRDGVLGIGRDGKINYWDGN--------------VLKALKQ-MGYHFSDIIV---HKGQTYALDSIGIVYW 223 (373)
T ss_pred EEEeecCCCcceEEEEEeecCcEeeecCC--------------eeeEccC-CCceeeEEEE---ECCEEEEEcCCCeEEE
Confidence 3345667765 6777788888888532 2344442 4567888888 7777788888999999
Q ss_pred Ee
Q psy5940 141 CG 142 (278)
Q Consensus 141 ~G 142 (278)
+.
T Consensus 224 i~ 225 (373)
T PLN03215 224 IN 225 (373)
T ss_pred Ee
Confidence 86
No 47
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=41.08 E-value=28 Score=20.99 Aligned_cols=18 Identities=33% Similarity=0.371 Sum_probs=14.5
Q ss_pred CCeEEEEECCcEEEeeCC
Q psy5940 182 RFHSVVYSSREVYTFGIH 199 (278)
Q Consensus 182 ~~~~~~l~~~~vy~wG~n 199 (278)
..|+++.-++++|+||--
T Consensus 3 ~~hs~~~~~~kiyv~GG~ 20 (49)
T PF07646_consen 3 YGHSAVVLDGKIYVFGGY 20 (49)
T ss_pred cceEEEEECCEEEEECCc
Confidence 357788888999999973
No 48
>KOG4441|consensus
Probab=40.94 E-value=3.4e+02 Score=26.22 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=14.2
Q ss_pred CeEEEEECCcEEEeeCCCc
Q psy5940 183 FHSVVYSSREVYTFGIHAG 201 (278)
Q Consensus 183 ~~~~~l~~~~vy~wG~n~g 201 (278)
.|.++..++.||+.|-..+
T Consensus 468 ~~g~a~~~~~iYvvGG~~~ 486 (571)
T KOG4441|consen 468 GFGVAVLNGKIYVVGGFDG 486 (571)
T ss_pred cceEEEECCEEEEECCccC
Confidence 3457777999999998544
No 49
>KOG0293|consensus
Probab=40.00 E-value=3.1e+02 Score=25.39 Aligned_cols=28 Identities=18% Similarity=0.272 Sum_probs=21.9
Q ss_pred eEEEEccCCeEEEEE--CC-cEEEeeCCCcc
Q psy5940 175 LIGVCCGRFHSVVYS--SR-EVYTFGIHAGQ 202 (278)
Q Consensus 175 i~~i~~g~~~~~~l~--~~-~vy~wG~n~gq 202 (278)
|.++..|.+..++.+ +| +||.|-.-.|.
T Consensus 443 IrSCFgg~~~~fiaSGSED~kvyIWhr~sgk 473 (519)
T KOG0293|consen 443 IRSCFGGGNDKFIASGSEDSKVYIWHRISGK 473 (519)
T ss_pred EEeccCCCCcceEEecCCCceEEEEEccCCc
Confidence 788888888888886 44 99999875443
No 50
>PHA02146 hypothetical protein
Probab=38.75 E-value=34 Score=22.79 Aligned_cols=29 Identities=28% Similarity=0.510 Sum_probs=22.0
Q ss_pred EeccCceEEEEecCCcCeEeec--CCCCccC
Q psy5940 236 SNRGTKHSFTAETSLGPEFGGG--WTGKKGK 264 (278)
Q Consensus 236 i~~G~~hs~~~lt~~g~v~~wG--~ng~~~~ 264 (278)
|..|..+++--|..+|.+|..| |||.-|.
T Consensus 23 i~ng~ef~v~~~d~dgd~~s~~iswng~dg~ 53 (86)
T PHA02146 23 ITNGTEFTVTNIDDDGDLYTYDISWNGRDGK 53 (86)
T ss_pred cCCCcEEEeeccccCCCeEeecccccCccCC
Confidence 4567777777788999999887 6777554
No 51
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=34.17 E-value=3.4e+02 Score=24.14 Aligned_cols=17 Identities=12% Similarity=0.208 Sum_probs=12.5
Q ss_pred CCcEEEEEEcCCcEEEE
Q psy5940 125 SQDHSVFLMLSGSVFVC 141 (278)
Q Consensus 125 g~~~~~~lt~~G~v~~~ 141 (278)
..++.++.+.+|+||+|
T Consensus 360 ~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 360 VGDGLLVQTRDGDLYAF 376 (377)
T ss_pred ECCEEEEEeCCceEEEe
Confidence 34567778888888876
No 52
>KOG1408|consensus
Probab=33.26 E-value=5.1e+02 Score=25.98 Aligned_cols=66 Identities=14% Similarity=0.069 Sum_probs=38.9
Q ss_pred EEEecCCCcEEEEecCCCCcccCCCCC-CccCceeec-------cccCCCEEEEeccCC----ceEEEeCCCCEEEEe
Q psy5940 22 DVSSNQFNEVYIWGTNANYNLGTGSQQ-TRDVPELLD-------SLKRASIKQVCMDKF----HSVFVSDDGRVWSCG 87 (278)
Q Consensus 22 ~i~l~~~g~v~~wG~n~~gqlG~~~~~-~~~~p~~i~-------~~~~~~i~~v~~g~~----~~~~lt~~g~v~~~G 87 (278)
.++.+++|.-|.---|.+-.++.-+.. ....|.++. .+....+.+|+||.. .+++||..|.|--+-
T Consensus 170 av~fsEdgSYfvT~gnrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFS 247 (1080)
T KOG1408|consen 170 AVAFSEDGSYFVTSGNRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFS 247 (1080)
T ss_pred EEEEccCCceeeeeeeeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeec
Confidence 345677776655444444333331111 122333332 233347899999998 999999999887664
No 53
>KOG1900|consensus
Probab=32.38 E-value=2.5e+02 Score=29.84 Aligned_cols=101 Identities=19% Similarity=0.175 Sum_probs=57.5
Q ss_pred EEEEEcCCcEEEEeCCCccccCCCCCCCCCCCCeeeccCCCCCCCCeEEEEcc-----CCeEEEEEC-CcEEEeeCCC--
Q psy5940 129 SVFLMLSGSVFVCGLNSFHQLGLSPPPSHIVSPTPIPRSSLKSSQPLIGVCCG-----RFHSVVYSS-REVYTFGIHA-- 200 (278)
Q Consensus 129 ~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~~~~i~~i~~g-----~~~~~~l~~-~~vy~wG~n~-- 200 (278)
-+.+|.|++||.|--++-+++-.-+.-++ .-..|. .++...| -.|.+++.. -+++..|--.
T Consensus 92 RaWiTiDn~L~lWny~~~~e~~~~d~~sh--tIl~V~---------LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~ 160 (1311)
T KOG1900|consen 92 RAWITIDNNLFLWNYESDNELAEYDGLSH--TILKVG---------LVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDE 160 (1311)
T ss_pred ceEEEeCCeEEEEEcCCCCccccccchhh--hheeee---------eecCCCCcchhhhheeEEecccceEEEEEEEecc
Confidence 35788999999998877665543222111 111111 1111222 267888865 4888888742
Q ss_pred cccCCCCCCCCCCceeeceEeeecccCCCCcceEEEec-cCceEEEEecCCcCeEeecCCCCc
Q psy5940 201 GQLGHSPVTVSSASVIEPKVQATIIREDLPGFIFESNR-GTKHSFTAETSLGPEFGGGWTGKK 262 (278)
Q Consensus 201 gqlG~~~~~~~~~~~~~P~~i~~~~~~~~~~~i~~i~~-G~~hs~~~lt~~g~v~~wG~ng~~ 262 (278)
...+... +.. .++|+. |.+-++++-+++|.+|--|++|++
T Consensus 161 ~~~~~~~----------------f~~------~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~l 201 (1311)
T KOG1900|consen 161 FTGELSI----------------FNT------SFKISVDGVSVNCITYTENGRIFFAGRDGNL 201 (1311)
T ss_pred ccCcccc----------------ccc------ceeeecCCceEEEEEeccCCcEEEeecCCCE
Confidence 2222222 110 244554 555566556899999999998863
No 54
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=31.39 E-value=2.7e+02 Score=24.25 Aligned_cols=17 Identities=29% Similarity=0.313 Sum_probs=12.4
Q ss_pred CeEEEEECCcEEEeeCC
Q psy5940 183 FHSVVYSSREVYTFGIH 199 (278)
Q Consensus 183 ~~~~~l~~~~vy~wG~n 199 (278)
.|+++..+++||++|-.
T Consensus 164 ~~~~~~~~~~iYv~GG~ 180 (323)
T TIGR03548 164 QPVCVKLQNELYVFGGG 180 (323)
T ss_pred cceEEEECCEEEEEcCC
Confidence 45555567899999963
No 55
>PLN02772 guanylate kinase
Probab=30.94 E-value=1.5e+02 Score=27.25 Aligned_cols=69 Identities=12% Similarity=-0.033 Sum_probs=37.6
Q ss_pred cCCeEEEEECCcEEEeeCC-C-cccCCCC--CCCCCCceeeceEeeecccCCCCcceEEEeccCceEEEEecCCcCeEee
Q psy5940 181 GRFHSVVYSSREVYTFGIH-A-GQLGHSP--VTVSSASVIEPKVQATIIREDLPGFIFESNRGTKHSFTAETSLGPEFGG 256 (278)
Q Consensus 181 g~~~~~~l~~~~vy~wG~n-~-gqlG~~~--~~~~~~~~~~P~~i~~~~~~~~~~~i~~i~~G~~hs~~~lt~~g~v~~w 256 (278)
...|+.+.-.+++|+||-+ . +.+.... ..+.......|...-.... +| .-||+ ++-++..++..
T Consensus 25 ~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~----------~r-~GhSa-~v~~~~rilv~ 92 (398)
T PLN02772 25 KNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPK----------PC-KGYSA-VVLNKDRILVI 92 (398)
T ss_pred CCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCC----------CC-CcceE-EEECCceEEEE
Confidence 4557777778999999975 3 4343332 1122344455544432221 12 35777 45556667766
Q ss_pred cCCCC
Q psy5940 257 GWTGK 261 (278)
Q Consensus 257 G~ng~ 261 (278)
+.-+.
T Consensus 93 ~~~~~ 97 (398)
T PLN02772 93 KKGSA 97 (398)
T ss_pred eCCCC
Confidence 65444
No 56
>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation. SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....
Probab=30.45 E-value=45 Score=20.81 Aligned_cols=23 Identities=9% Similarity=0.024 Sum_probs=17.3
Q ss_pred eeccCCceEEEecCCCcEEEEec
Q psy5940 14 HLIRDRKIDVSSNQFNEVYIWGT 36 (278)
Q Consensus 14 v~~~~~~~~i~l~~~g~v~~wG~ 36 (278)
+.|+...+.|+...+|++|.|.+
T Consensus 29 ~LC~~~v~~iv~~~~g~~~~f~s 51 (51)
T PF00319_consen 29 TLCGVDVALIVFSPDGKLYTFPS 51 (51)
T ss_dssp HHHT-EEEEEEEETTSEEEEEES
T ss_pred eecCCeEEEEEECCCCCEEEecC
Confidence 45777777777889999999963
No 57
>KOG4693|consensus
Probab=29.80 E-value=1e+02 Score=26.67 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=16.2
Q ss_pred cCCeEEEEECCcEEEeeCC
Q psy5940 181 GRFHSVVYSSREVYTFGIH 199 (278)
Q Consensus 181 g~~~~~~l~~~~vy~wG~n 199 (278)
-..|+++.-+|++|.||-.
T Consensus 79 RYGHtvV~y~d~~yvWGGR 97 (392)
T KOG4693|consen 79 RYGHTVVEYQDKAYVWGGR 97 (392)
T ss_pred hcCceEEEEcceEEEEcCc
Confidence 3578999999999999973
No 58
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=29.44 E-value=6.3e+02 Score=26.16 Aligned_cols=212 Identities=14% Similarity=0.169 Sum_probs=98.6
Q ss_pred ecCCCcEEEEecCCCCc-ccCCCCCCccCceeecccc-CCCEEEEeccCCceEEEeCCCCEEEEeCCCCCcCCCCCCCce
Q psy5940 25 SNQFNEVYIWGTNANYN-LGTGSQQTRDVPELLDSLK-RASIKQVCMDKFHSVFVSDDGRVWSCGHGQGGRLGLGSESSV 102 (278)
Q Consensus 25 l~~~g~v~~wG~n~~gq-lG~~~~~~~~~p~~i~~~~-~~~i~~v~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~ 102 (278)
+|.++++..|-.|+... --+++......-.++-.+. +.-+- --.|.+++.+.-++|..|-... +.+..
T Consensus 98 iT~dnkLiLWnynn~neyq~idd~shtIlkVkLvrPkantFvs----~i~hlL~vAT~~e~~ilgvs~d------~~T~E 167 (1263)
T COG5308 98 ITNDNKLILWNYNNSNEYQEIDDFSHTILKVKLVRPKANTFVS----RISHLLFVATEKEVMILGVSKD------TKTGE 167 (1263)
T ss_pred EEcCCEEEEEecCCCcchhhhhhhhhheeEEEEeccCCcccHH----hhhhhhhhhhhheeeEEEEEec------cccce
Confidence 78999999998764332 2233333322111111111 11111 2257777777778888774321 11110
Q ss_pred eccEEeecCCCCCEEEEEEccCCCcEEEEEE-cCCcEEEEeCCCcc--ccCCCCC----------------CCCCCCCee
Q psy5940 103 VSPKKLNFEKDKDKLGVAMASISQDHSVFLM-LSGSVFVCGLNSFH--QLGLSPP----------------PSHIVSPTP 163 (278)
Q Consensus 103 ~~p~~i~~~~~~~i~~i~~~~~g~~~~~~lt-~~G~v~~~G~n~~g--qlg~~~~----------------~~~~~~p~~ 163 (278)
+..++ ..++--.- |-+-.+++. ++|++|--|.++-+ +|-.... .-....|+.
T Consensus 168 -----ls~fn-Tgl~vsvq---GinV~civs~e~GrIFf~g~~d~nvyEl~Y~~sd~wfnskcskiclTkS~l~sllPs~ 238 (1263)
T COG5308 168 -----LSLFN-TGLVVSVQ---GINVRCIVSEEDGRIFFGGENDPNVYELVYKSSDSWFNSKCSKICLTKSILSSLLPSF 238 (1263)
T ss_pred -----eEEEe-cceEEecc---CceeEEEEeccCCcEEEecCCCCCeEEEEEeccchhhhhhhhccCCcHHHHHhhcccc
Confidence 11111 11111111 233333444 45999988887621 1111100 011344554
Q ss_pred eccCCCCCCCCeEEEEccCCeEEEEE--C--C-cEEEeeCCC--cccCCCC--------CCCCCCceeeceEeeecccCC
Q psy5940 164 IPRSSLKSSQPLIGVCCGRFHSVVYS--S--R-EVYTFGIHA--GQLGHSP--------VTVSSASVIEPKVQATIIRED 228 (278)
Q Consensus 164 i~~~~~~~~~~i~~i~~g~~~~~~l~--~--~-~vy~wG~n~--gqlG~~~--------~~~~~~~~~~P~~i~~~~~~~ 228 (278)
+.. ...+.. |++++.-....+..+ + - +-|.-+.|. |..-... ..+.......|+...-..
T Consensus 239 ~~~-~ipget-I~Ql~vDqsRg~ly~Lr~kS~Vray~itkngl~gpv~i~~a~i~r~a~~lna~sPlL~pr~~kIvk--- 313 (1263)
T COG5308 239 FSF-GIPGET-IKQLAVDQSRGLLYVLRKKSAVRAYSITKNGLVGPVFISFASIDRNAAILNATSPLLEPRMYKIVK--- 313 (1263)
T ss_pred ccc-CCcccc-hhheeecccccceeeecccceeeeEeeecccccccccccHHHHHhHHhhhccCCcccCCceEEEEE---
Confidence 443 445666 889988876665554 2 2 778877763 4211111 000011222333222111
Q ss_pred CCcceEEEeccC--ceEEEEecCCc-CeEeecCCCCccC
Q psy5940 229 LPGFIFESNRGT--KHSFTAETSLG-PEFGGGWTGKKGK 264 (278)
Q Consensus 229 ~~~~i~~i~~G~--~hs~~~lt~~g-~v~~wG~ng~~~~ 264 (278)
|+.|++-. +--++++|.+| .+|.-|.-|.-..
T Consensus 314 ----Ivsi~~~Enn~lflvaiT~tgcRlYf~Gs~gr~si 348 (1263)
T COG5308 314 ----IVSIPAYENNQLFLVAITSTGCRLYFDGSRGRVSI 348 (1263)
T ss_pred ----EeecccccccceEEEEEeccceEEEEecCccceee
Confidence 34343322 23355888888 8898887766443
No 59
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=29.36 E-value=4.5e+02 Score=24.11 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=19.6
Q ss_pred CCEEEEEEccCCCcEEEEEEcCCcEEEE
Q psy5940 114 KDKLGVAMASISQDHSVFLMLSGSVFVC 141 (278)
Q Consensus 114 ~~i~~i~~~~~g~~~~~~lt~~G~v~~~ 141 (278)
.++.+++. +-...|.++++++|++|..
T Consensus 217 ~~i~~iav-Spng~~iAl~t~~g~l~v~ 243 (410)
T PF04841_consen 217 GPIIKIAV-SPNGKFIALFTDSGNLWVV 243 (410)
T ss_pred CCeEEEEE-CCCCCEEEEEECCCCEEEE
Confidence 47788776 1124588899999999985
No 60
>PHA02713 hypothetical protein; Provisional
Probab=27.77 E-value=4.4e+02 Score=25.35 Aligned_cols=17 Identities=12% Similarity=0.141 Sum_probs=12.3
Q ss_pred CeEEEEECCcEEEeeCC
Q psy5940 183 FHSVVYSSREVYTFGIH 199 (278)
Q Consensus 183 ~~~~~l~~~~vy~wG~n 199 (278)
.++++.-+|+||+.|-.
T Consensus 391 ~~~~~~~~g~IYviGG~ 407 (557)
T PHA02713 391 SYGMCVLDQYIYIIGGR 407 (557)
T ss_pred cccEEEECCEEEEEeCC
Confidence 34555568899999863
No 61
>PF07312 DUF1459: Protein of unknown function (DUF1459); InterPro: IPR009924 This family consists of several hypothetical Caenorhabditis elegans proteins of around 85 residues in length. The function of this family is unknown.
Probab=27.36 E-value=39 Score=23.16 Aligned_cols=12 Identities=42% Similarity=0.972 Sum_probs=9.3
Q ss_pred cE-EEEecCCCCc
Q psy5940 30 EV-YIWGTNANYN 41 (278)
Q Consensus 30 ~v-~~wG~n~~gq 41 (278)
.+ |.||+|+.-+
T Consensus 57 sv~waWGSNKnk~ 69 (84)
T PF07312_consen 57 SVYWAWGSNKNKQ 69 (84)
T ss_pred ceeeeeccCCCCC
Confidence 46 9999997654
No 62
>PHA02790 Kelch-like protein; Provisional
Probab=27.27 E-value=4.1e+02 Score=24.90 Aligned_cols=16 Identities=6% Similarity=0.102 Sum_probs=12.7
Q ss_pred CeEEEEECCcEEEeeC
Q psy5940 183 FHSVVYSSREVYTFGI 198 (278)
Q Consensus 183 ~~~~~l~~~~vy~wG~ 198 (278)
.+.++.-+|+||+.|-
T Consensus 439 ~~~~~v~~~~IYviGG 454 (480)
T PHA02790 439 NPELIIVDNKLLLIGG 454 (480)
T ss_pred ccEEEEECCEEEEECC
Confidence 4566677899999996
No 63
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=27.15 E-value=1.9e+02 Score=20.01 Aligned_cols=42 Identities=14% Similarity=0.233 Sum_probs=27.9
Q ss_pred ccEEeecCCCCCEEEEEEccCC-CcEEEEEEcCCcEEEEeCCCccccC
Q psy5940 104 SPKKLNFEKDKDKLGVAMASIS-QDHSVFLMLSGSVFVCGLNSFHQLG 150 (278)
Q Consensus 104 ~p~~i~~~~~~~i~~i~~~~~g-~~~~~~lt~~G~v~~~G~n~~gqlg 150 (278)
.|..+.. +..=..|+| . ....++|+.||.+|+-+--+.|++=
T Consensus 8 ~Pa~i~~--~~tS~~Vs~---~~~gs~ValS~dg~l~G~ai~~sG~at 50 (81)
T PF03785_consen 8 HPASINL--GQTSISVSC---DVPGSYVALSQDGDLYGKAIVNSGNAT 50 (81)
T ss_dssp --SEEET--T-SEEEEEE---SSTT-EEEEEETTEEEEEEE-BTTEEE
T ss_pred ccccccc--cccEEEEEe---cCCCcEEEEecCCEEEEEEEecCceEE
Confidence 4545543 446678889 8 6778899999999999876666553
No 64
>KOG0307|consensus
Probab=27.03 E-value=1.7e+02 Score=30.19 Aligned_cols=32 Identities=13% Similarity=0.337 Sum_probs=20.7
Q ss_pred eEEEE-ccCCeEEEEE---CCcEEEeeCCC-cccCCC
Q psy5940 175 LIGVC-CGRFHSVVYS---SREVYTFGIHA-GQLGHS 206 (278)
Q Consensus 175 i~~i~-~g~~~~~~l~---~~~vy~wG~n~-gqlG~~ 206 (278)
|++++ |..+-.++|+ |+++++|+-|. -+|+.-
T Consensus 256 ilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~ 292 (1049)
T KOG0307|consen 256 ILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGEL 292 (1049)
T ss_pred eeeeccCCCCchhhhcccCCCCeeEecCCCceEeeec
Confidence 66664 4555566676 34999999985 344433
No 65
>KOG1034|consensus
Probab=26.86 E-value=2.5e+02 Score=25.10 Aligned_cols=60 Identities=10% Similarity=0.087 Sum_probs=38.4
Q ss_pred EEEeCCCCEEEEeCCCCCcCCCCCCCceeccEEeecCCCCCEEEEEEccCCCcEEEEEEcCCcEEEEeC
Q psy5940 75 VFVSDDGRVWSCGHGQGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCGL 143 (278)
Q Consensus 75 ~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~~~~g~~~~~~lt~~G~v~~~G~ 143 (278)
++..+.|+||.|-.... .+...++......+..|.|.+. +--....+++.+++.||.|-.
T Consensus 323 a~gnq~g~v~vwdL~~~--------ep~~~ttl~~s~~~~tVRQ~sf-S~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDNN--------EPPKCTTLTHSKSGSTVRQTSF-SRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred hhccCCCcEEEEECCCC--------CCccCceEEeccccceeeeeee-cccCcEEEEEeCCCcEEEEEe
Confidence 44567899999975321 1113445555555678888776 223446677888999998853
No 66
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=25.91 E-value=87 Score=18.24 Aligned_cols=17 Identities=24% Similarity=0.374 Sum_probs=13.8
Q ss_pred CCeEEEEECCcEEEeeC
Q psy5940 182 RFHSVVYSSREVYTFGI 198 (278)
Q Consensus 182 ~~~~~~l~~~~vy~wG~ 198 (278)
..|+++..+++||+.|-
T Consensus 3 ~~~~~~~~~~~iyv~GG 19 (47)
T PF01344_consen 3 SGHAAVVVGNKIYVIGG 19 (47)
T ss_dssp BSEEEEEETTEEEEEEE
T ss_pred ccCEEEEECCEEEEEee
Confidence 35777778899999987
No 67
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=25.23 E-value=5.3e+02 Score=23.62 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=19.8
Q ss_pred CEEEEeccCCceEEEeCCCCEEEEe
Q psy5940 63 SIKQVCMDKFHSVFVSDDGRVWSCG 87 (278)
Q Consensus 63 ~i~~v~~g~~~~~~lt~~g~v~~~G 87 (278)
++-.+..+.+-.++||.++++|.-=
T Consensus 129 ~i~~~~~~~~GivvLt~~~~~~~v~ 153 (410)
T PF04841_consen 129 RIFAIWFYKNGIVVLTGNNRFYVVN 153 (410)
T ss_pred cccccccCCCCEEEECCCCeEEEEe
Confidence 4555577777789999999999873
No 68
>PF13938 DUF4213: Domain of unknown function (DUF4213); PDB: 3NPG_A 3L5O_B.
Probab=24.27 E-value=1.1e+02 Score=21.19 Aligned_cols=23 Identities=17% Similarity=0.380 Sum_probs=19.1
Q ss_pred ccCCCEEEEeccCCceEEEeCCC
Q psy5940 59 LKRASIKQVCMDKFHSVFVSDDG 81 (278)
Q Consensus 59 ~~~~~i~~v~~g~~~~~~lt~~g 81 (278)
+++.+|+++..|...+++..++|
T Consensus 9 ~~~~~V~~~~iG~~~t~V~~~~G 31 (87)
T PF13938_consen 9 APDIRVEDVCIGLHWTAVELSDG 31 (87)
T ss_dssp CGC-EEEEEEEBSSEEEEEETT-
T ss_pred CCCCEEEEEEEcCCEEEEEeCCC
Confidence 45668999999999999999998
No 69
>KOG0646|consensus
Probab=24.26 E-value=5.9e+02 Score=23.81 Aligned_cols=95 Identities=14% Similarity=0.168 Sum_probs=48.9
Q ss_pred EecCCCcEEEEecCCCCcccCCCCCCccCceeeccccCC--CEEEEeccCCceEEEe--CCCCEEEEeCCCCCcCCCCCC
Q psy5940 24 SSNQFNEVYIWGTNANYNLGTGSQQTRDVPELLDSLKRA--SIKQVCMDKFHSVFVS--DDGRVWSCGHGQGGRLGLGSE 99 (278)
Q Consensus 24 ~l~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~--~i~~v~~g~~~~~~lt--~~g~v~~~G~n~~gqlg~~~~ 99 (278)
+=+..|++|.|--+ .|.| +..+... .|..+....+-+++++ +||.|.+|-.-+.-+ .+.
T Consensus 98 ag~i~g~lYlWels-sG~L-------------L~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~---a~~ 160 (476)
T KOG0646|consen 98 AGTISGNLYLWELS-SGIL-------------LNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVS---ADN 160 (476)
T ss_pred eecccCcEEEEEec-cccH-------------HHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecc---ccc
Confidence 33478899999664 3332 1111111 4556666666666665 689999996432210 111
Q ss_pred CceeccEEeecCCCCCEEEEEEccCCCcEEEEEEcCCcEEEEeC
Q psy5940 100 SSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCGL 143 (278)
Q Consensus 100 ~~~~~p~~i~~~~~~~i~~i~~~~~g~~~~~~lt~~G~v~~~G~ 143 (278)
.....|..+-.-....|.++.+ |.-- .+.+||+.+.
T Consensus 161 ~~~~~p~~~f~~HtlsITDl~i---g~Gg-----~~~rl~TaS~ 196 (476)
T KOG0646|consen 161 DHSVKPLHIFSDHTLSITDLQI---GSGG-----TNARLYTASE 196 (476)
T ss_pred CCCccceeeeccCcceeEEEEe---cCCC-----ccceEEEecC
Confidence 1122333332333567777777 6543 3445555443
No 70
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=24.15 E-value=81 Score=26.96 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=21.3
Q ss_pred eEEEeccCceEEEEecCCcCeEee
Q psy5940 233 IFESNRGTKHSFTAETSLGPEFGG 256 (278)
Q Consensus 233 i~~i~~G~~hs~~~lt~~g~v~~w 256 (278)
++-|..|+.||++++-.+++||+-
T Consensus 169 ~~~vniGN~HTlaa~v~~~rI~Gv 192 (254)
T PF08735_consen 169 IIVVNIGNGHTLAALVKDGRIYGV 192 (254)
T ss_pred eEEEEeCCccEEEEEEeCCEEEEE
Confidence 888999999999998899988864
No 71
>KOG0649|consensus
Probab=23.36 E-value=4.8e+02 Score=22.44 Aligned_cols=32 Identities=19% Similarity=0.073 Sum_probs=24.3
Q ss_pred CCCEEEEEEccCCCcEEEEEEcCCcEEEEeCCCccc
Q psy5940 113 DKDKLGVAMASISQDHSVFLMLSGSVFVCGLNSFHQ 148 (278)
Q Consensus 113 ~~~i~~i~~~~~g~~~~~~lt~~G~v~~~G~n~~gq 148 (278)
..+|-.++. -+.|.+.-- +|.||+|-.+++-.
T Consensus 62 dgpiy~~~f---~d~~Lls~g-dG~V~gw~W~E~~e 93 (325)
T KOG0649|consen 62 DGPIYYLAF---HDDFLLSGG-DGLVYGWEWNEEEE 93 (325)
T ss_pred CCCeeeeee---ehhheeecc-CceEEEeeehhhhh
Confidence 568888888 766665444 59999999998765
No 72
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=22.90 E-value=5.7e+02 Score=23.07 Aligned_cols=132 Identities=14% Similarity=0.157 Sum_probs=0.0
Q ss_pred CcccCCCCCCcce-eeccCCce--------EEEecCCCc-EEEEecCCCCcccCCCCCCccCceeeccccCCCEEEEecc
Q psy5940 1 MTVMDNEEMRPID-HLIRDRKI--------DVSSNQFNE-VYIWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCMD 70 (278)
Q Consensus 1 ~~~~~~~~~~~~~-v~~~~~~~--------~i~l~~~g~-v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g 70 (278)
+.+.|.....++. |..+..-- .++++.+|+ +|+.-......+..=+......-..|+... -..-+..+
T Consensus 79 V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~--~~~vy~t~ 156 (352)
T TIGR02658 79 VEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD--CYHIFPTA 156 (352)
T ss_pred EEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC--CcEEEEec
Q ss_pred CCceEEEeCCCCEEEEeCCCCCcCCCCCCCceeccEEeecCCCCCEEEEEEccCCCcEEEEEEcCCcEEEE
Q psy5940 71 KFHSVFVSDDGRVWSCGHGQGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVC 141 (278)
Q Consensus 71 ~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~~~~g~~~~~~lt~~G~v~~~ 141 (278)
....+++.-||++........|. ........+.+...+.+..- .... .+...++++.+|.||..
T Consensus 157 e~~~~~~~~Dg~~~~v~~d~~g~-~~~~~~~vf~~~~~~v~~rP---~~~~---~dg~~~~vs~eG~V~~i 220 (352)
T TIGR02658 157 NDTFFMHCRDGSLAKVGYGTKGN-PKIKPTEVFHPEDEYLINHP---AYSN---KSGRLVWPTYTGKIFQI 220 (352)
T ss_pred CCccEEEeecCceEEEEecCCCc-eEEeeeeeecCCccccccCC---ceEc---CCCcEEEEecCCeEEEE
No 73
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=21.62 E-value=1.4e+02 Score=15.60 Aligned_cols=17 Identities=24% Similarity=0.425 Sum_probs=13.0
Q ss_pred cEEEEEEcCCcEEEEeC
Q psy5940 127 DHSVFLMLSGSVFVCGL 143 (278)
Q Consensus 127 ~~~~~lt~~G~v~~~G~ 143 (278)
-+.++++.+|+||+.=.
T Consensus 4 P~gvav~~~g~i~VaD~ 20 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADS 20 (28)
T ss_dssp EEEEEEETTSEEEEEEC
T ss_pred CcEEEEeCCCCEEEEEC
Confidence 46678889999998743
No 74
>PF11399 DUF3192: Protein of unknown function (DUF3192); InterPro: IPR021534 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=21.49 E-value=76 Score=23.02 Aligned_cols=24 Identities=13% Similarity=0.336 Sum_probs=19.2
Q ss_pred CCcEEEEEEcCCcEEEEeCCCccc
Q psy5940 125 SQDHSVFLMLSGSVFVCGLNSFHQ 148 (278)
Q Consensus 125 g~~~~~~lt~~G~v~~~G~n~~gq 148 (278)
-+..+-+|-.+|+|.+||...|.|
T Consensus 78 kDECTplvF~n~~LvgWG~~ay~~ 101 (102)
T PF11399_consen 78 KDECTPLVFKNGKLVGWGDDAYSQ 101 (102)
T ss_pred CCceEEEEEECCEEEEEcHHhhhc
Confidence 455667888999999999987754
No 75
>PRK14747 cytochrome b6-f complex subunit PetN; Provisional
Probab=21.33 E-value=59 Score=17.60 Aligned_cols=10 Identities=20% Similarity=-0.040 Sum_probs=7.0
Q ss_pred cCeEeecCCC
Q psy5940 251 GPEFGGGWTG 260 (278)
Q Consensus 251 g~v~~wG~ng 260 (278)
=.+..||+||
T Consensus 19 lslVVWGRnG 28 (29)
T PRK14747 19 IAMVVWGRNG 28 (29)
T ss_pred eeEEEEecCC
Confidence 3466788887
No 76
>KOG2444|consensus
Probab=20.67 E-value=2.2e+02 Score=24.00 Aligned_cols=61 Identities=18% Similarity=0.065 Sum_probs=0.0
Q ss_pred EEEccCCCcEEEEEEcCCcEEEEeCCCccccCCCCCCCCCCCCeeeccCCCCCCCCeEEEEccCCeEEEEE---CCcEEE
Q psy5940 119 VAMASISQDHSVFLMLSGSVFVCGLNSFHQLGLSPPPSHIVSPTPIPRSSLKSSQPLIGVCCGRFHSVVYS---SREVYT 195 (278)
Q Consensus 119 i~~~~~g~~~~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~~~~i~~i~~g~~~~~~l~---~~~vy~ 195 (278)
|.- +..-.++.+.+|.||+|-.|.+|+.-.-.. ...+.. ..-|..+....+.++ +++++.
T Consensus 66 v~~---~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~-------------s~~e~i-~~~Ip~~~~~~~~c~~~~dg~ir~ 128 (238)
T KOG2444|consen 66 VVT---ASAKLMVGTSDGAVYVFNWNLEGAHSDRVC-------------SGEESI-DLGIPNGRDSSLGCVGAQDGRIRA 128 (238)
T ss_pred ecc---cCceEEeecccceEEEecCCccchHHHhhh-------------cccccc-eeccccccccceeEEeccCCceee
Q ss_pred e
Q psy5940 196 F 196 (278)
Q Consensus 196 w 196 (278)
|
T Consensus 129 ~ 129 (238)
T KOG2444|consen 129 C 129 (238)
T ss_pred e
No 77
>KOG1274|consensus
Probab=20.63 E-value=9.3e+02 Score=24.72 Aligned_cols=65 Identities=12% Similarity=0.138 Sum_probs=36.7
Q ss_pred CceEEEecCCCc-EEEEecCCCCcccCCCCCCccCceeeccccCCCEEEEeccCCceEEEeCCCCEEE
Q psy5940 19 RKIDVSSNQFNE-VYIWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCMDKFHSVFVSDDGRVWS 85 (278)
Q Consensus 19 ~~~~i~l~~~g~-v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~ 85 (278)
.++.|..+.+|+ ++++|++..-.- .....+...|..|.. .+..|-.+++-..|.+.=++++.|-.
T Consensus 15 G~t~i~~d~~gefi~tcgsdg~ir~-~~~~sd~e~P~ti~~-~g~~v~~ia~~s~~f~~~s~~~tv~~ 80 (933)
T KOG1274|consen 15 GLTLICYDPDGEFICTCGSDGDIRK-WKTNSDEEEPETIDI-SGELVSSIACYSNHFLTGSEQNTVLR 80 (933)
T ss_pred ceEEEEEcCCCCEEEEecCCCceEE-eecCCcccCCchhhc-cCceeEEEeecccceEEeeccceEEE
Confidence 355566666665 445555432221 111112245655543 45578889888888888788875533
Done!