Query psy5940
Match_columns 278
No_of_seqs 144 out of 1549
Neff 9.1
Searched_HMMs 29240
Date Fri Aug 16 22:24:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5940.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5940hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4d9s_A UVB-resistance protein 100.0 1.3E-51 4.3E-56 374.8 30.3 255 4-275 116-372 (406)
2 4d9s_A UVB-resistance protein 100.0 1.3E-50 4.5E-55 368.2 29.3 252 4-272 63-317 (406)
3 3kci_A Probable E3 ubiquitin-p 100.0 6.8E-51 2.3E-55 368.1 27.0 248 11-275 109-360 (389)
4 3kci_A Probable E3 ubiquitin-p 100.0 2E-49 6.9E-54 358.5 26.0 246 8-270 52-303 (389)
5 3of7_A Regulator of chromosome 100.0 6.9E-47 2.4E-51 350.0 30.1 246 7-267 65-348 (473)
6 1a12_A RCC1, regulator of chro 100.0 2.5E-47 8.5E-52 347.3 26.1 243 10-270 112-375 (413)
7 3mvd_K Regulator of chromosome 100.0 1.6E-46 5.4E-51 342.9 29.9 247 11-275 77-389 (423)
8 1a12_A RCC1, regulator of chro 100.0 7.7E-47 2.6E-51 344.1 27.8 243 9-267 59-321 (413)
9 3of7_A Regulator of chromosome 100.0 1.2E-46 4E-51 348.5 26.2 245 7-268 146-413 (473)
10 3mvd_K Regulator of chromosome 100.0 6.3E-45 2.1E-49 332.4 25.2 242 7-266 22-277 (423)
11 3qhy_B Beta-lactamase inhibito 100.0 2E-39 6.9E-44 280.7 21.9 190 9-267 24-214 (282)
12 3qhy_B Beta-lactamase inhibito 100.0 5.5E-39 1.9E-43 277.9 20.2 189 9-266 63-252 (282)
13 4gbf_A Phikz131; 7-bladed beta 96.6 0.0079 2.7E-07 49.7 8.0 72 10-94 309-380 (400)
14 4gbf_A Phikz131; 7-bladed beta 95.1 0.043 1.5E-06 45.3 6.3 72 62-149 309-380 (400)
15 3odt_A Protein DOA1; ubiquitin 81.4 19 0.00066 28.9 19.9 67 62-142 105-171 (313)
16 3no0_A DNA gyrase subunit A; D 80.3 24 0.00081 29.2 16.0 119 23-152 131-253 (276)
17 1zvt_A Topoisomerase IV subuni 76.5 29 0.00098 28.4 10.7 119 23-151 48-169 (256)
18 2zwa_A Leucine carboxyl methyl 76.1 31 0.0011 32.6 12.3 20 125-144 490-509 (695)
19 4asc_A Kelch repeat and BTB do 73.0 23 0.00077 29.3 9.5 18 182-199 235-252 (315)
20 3ii7_A Kelch-like protein 7; p 71.4 25 0.00086 28.8 9.4 18 182-199 192-209 (306)
21 1p22_A F-BOX/WD-repeat protein 67.6 59 0.002 27.9 22.5 108 63-198 215-323 (435)
22 1wp5_A Topoisomerase IV; broke 67.0 58 0.002 27.6 13.3 121 23-151 54-180 (323)
23 1zvu_A Topoisomerase IV subuni 66.2 82 0.0028 29.9 12.3 126 16-151 511-639 (716)
24 3uc1_A DNA gyrase subunit A; D 65.1 64 0.0022 27.4 15.4 152 23-190 57-217 (327)
25 4asc_A Kelch repeat and BTB do 63.5 44 0.0015 27.5 9.4 17 182-198 188-204 (315)
26 1p22_A F-BOX/WD-repeat protein 61.0 79 0.0027 27.1 24.2 110 62-199 174-284 (435)
27 2aq5_A Coronin-1A; WD40 repeat 60.0 78 0.0027 26.7 21.0 114 16-144 42-162 (402)
28 1xip_A Nucleoporin NUP159; bet 56.2 58 0.002 28.4 9.1 64 64-143 90-153 (388)
29 1zgk_A Kelch-like ECH-associat 53.0 67 0.0023 26.2 8.7 17 182-198 254-270 (308)
30 2xn4_A Kelch-like protein 2; s 52.8 90 0.0031 25.2 9.5 18 182-199 243-260 (302)
31 3zwl_B Eukaryotic translation 52.8 92 0.0031 25.3 14.0 29 115-144 177-205 (369)
32 2woz_A Kelch repeat and BTB do 52.6 77 0.0026 26.0 9.1 17 182-198 198-214 (318)
33 3odt_A Protein DOA1; ubiquitin 51.9 87 0.003 24.8 21.0 148 63-260 144-296 (313)
34 1k3i_A Galactose oxidase precu 50.3 65 0.0022 29.9 9.0 20 126-145 244-263 (656)
35 1k3i_A Galactose oxidase precu 49.5 1.4E+02 0.0047 27.6 11.1 55 73-143 246-305 (656)
36 3v7d_B Cell division control p 47.7 1.3E+02 0.0045 25.7 22.8 107 63-199 312-420 (464)
37 1suu_A DNA gyrase subunit A; t 46.3 1.3E+02 0.0044 25.1 22.8 159 23-198 62-229 (312)
38 3ii7_A Kelch-like protein 7; p 45.8 99 0.0034 25.0 8.6 18 182-199 141-158 (306)
39 3uc1_A DNA gyrase subunit A; D 45.5 1.4E+02 0.0047 25.2 14.6 126 17-152 156-286 (327)
40 1gxr_A ESG1, transducin-like e 44.0 1.2E+02 0.0041 24.2 17.5 73 67-144 7-80 (337)
41 3k26_A Polycomb protein EED; W 42.6 1.3E+02 0.0046 24.2 18.9 81 62-145 162-260 (366)
42 2vpj_A Kelch-like protein 12; 42.0 1.3E+02 0.0046 24.1 11.5 17 182-198 245-261 (301)
43 1gxr_A ESG1, transducin-like e 40.9 1.4E+02 0.0047 23.8 21.7 113 20-143 12-126 (337)
44 3p6j_A De novo designed beta-t 39.9 1.1E+02 0.0038 22.5 12.4 111 7-141 28-139 (142)
45 2vpj_A Kelch-like protein 12; 38.6 1.5E+02 0.0052 23.7 12.1 18 182-199 198-215 (301)
46 3no0_A DNA gyrase subunit A; D 38.3 1.6E+02 0.0056 24.0 21.2 166 7-198 22-194 (276)
47 3l6v_A GYRA, DNA gyrase subuni 37.4 2E+02 0.0068 24.8 23.8 137 8-152 45-187 (370)
48 2ovr_B FBW7, F-BOX/WD repeat p 36.7 2E+02 0.0067 24.5 23.8 67 63-144 161-227 (445)
49 3no2_A Uncharacterized protein 35.7 1.7E+02 0.0059 23.5 21.0 22 242-264 245-267 (276)
50 1suu_A DNA gyrase subunit A; t 34.8 1.2E+02 0.004 25.4 7.3 165 20-199 9-180 (312)
51 1rwi_B Serine/threonine-protei 31.6 1.8E+02 0.0061 22.5 8.6 16 128-143 195-210 (270)
52 1sq9_A Antiviral protein SKI8; 31.5 2.2E+02 0.0074 23.4 14.5 79 62-144 122-215 (397)
53 2zwa_A Leucine carboxyl methyl 30.9 3.3E+02 0.011 25.4 12.0 20 125-144 597-616 (695)
54 3mmy_A MRNA export factor; mRN 30.8 2.1E+02 0.0071 23.0 15.5 72 62-144 40-116 (368)
55 3v7d_B Cell division control p 29.4 2.6E+02 0.009 23.7 22.7 79 63-144 205-298 (464)
56 4aez_A CDC20, WD repeat-contai 29.2 2.5E+02 0.0086 23.4 23.1 96 23-144 107-204 (401)
57 1q7f_A NHL, brain tumor CG1071 28.5 2.1E+02 0.0073 22.4 11.8 14 128-141 254-267 (286)
58 4a11_B DNA excision repair pro 26.8 2.6E+02 0.0089 22.8 21.1 115 73-200 158-276 (408)
59 3q7x_A De novo designed beta-t 25.0 1.9E+02 0.0066 20.7 8.1 59 70-141 56-114 (132)
60 3gre_A Serine/threonine-protei 24.8 2.3E+02 0.008 23.8 7.8 28 115-145 331-359 (437)
61 1r5m_A SIR4-interacting protei 24.3 3E+02 0.01 22.6 20.2 194 23-259 221-424 (425)
62 2ovr_B FBW7, F-BOX/WD repeat p 23.1 3.4E+02 0.012 22.9 25.8 108 63-198 281-389 (445)
63 1r5m_A SIR4-interacting protei 22.4 3.2E+02 0.011 22.4 16.9 69 62-145 290-361 (425)
64 3sjl_D Methylamine dehydrogena 20.8 4.1E+02 0.014 22.9 8.8 109 22-142 141-253 (386)
65 3vgz_A Uncharacterized protein 20.7 3.3E+02 0.011 21.8 9.9 14 246-259 320-334 (353)
66 3snv_A Symfoil-4T/permutation 20.0 2.6E+02 0.0089 20.4 8.6 64 64-140 52-116 (143)
No 1
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=1.3e-51 Score=374.85 Aligned_cols=255 Identities=22% Similarity=0.328 Sum_probs=227.2
Q ss_pred cCCCCCCcceeeccCCceEEEecCCCcEEEEecCCCCcccCCCCCCccCceeeccccCCCEEEEeccCCceEEEeCCCCE
Q psy5940 4 MDNEEMRPIDHLIRDRKIDVSSNQFNEVYIWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCMDKFHSVFVSDDGRV 83 (278)
Q Consensus 4 ~~~~~~~~~~v~~~~~~~~i~l~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v 83 (278)
..+++..+++|+|+..|+ ++|+++|+||+||.|.+||||.++......|.+++.+.+.+|++|+||.+|+++|+++|+|
T Consensus 116 ~~l~~~~i~~ia~G~~h~-~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~G~~hs~alt~~G~v 194 (406)
T 4d9s_A 116 KALHGIRIKQIACGDSHC-LAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDL 194 (406)
T ss_dssp GGGTTCCEEEEEECSSEE-EEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCE
T ss_pred cccCCCCEEEEEEChhhe-EEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCCCcEEEEecCCCeEEEEeCCCCE
Confidence 345677899999999998 7889999999999999999999999888999999999888999999999999999999999
Q ss_pred EEEeCCCCCcCCCCCCCceeccEEeecCCCCCEEEEEEccCCCcEEEEEEcCCcEEEEeCCCccccCCCCCCCCCCCCee
Q psy5940 84 WSCGHGQGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCGLNSFHQLGLSPPPSHIVSPTP 163 (278)
Q Consensus 84 ~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~~~~g~~~~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~p~~ 163 (278)
|+||.|.+||||.++......|.++..+...+|++|+| |.+|+++|+++|+||+||.|.+||||.+.. .....|++
T Consensus 195 ~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~---G~~ht~~l~~~G~v~~wG~n~~GqlG~g~~-~~~~~p~~ 270 (406)
T 4d9s_A 195 YGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVAC---GWRHTISVSYSGALYTYGWSKYGQLGHGDL-EDHLIPHK 270 (406)
T ss_dssp EEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEE---CSSEEEEEETTCCEEEEECCTTSTTCSSSC-CCEEEEEE
T ss_pred EEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEE---CCCcEEEEcCCCCEEEeeCCCCCCCCCCCC-cCccccEE
Confidence 99999999999999998888999999888889999999 999999999999999999999999999865 45567887
Q ss_pred eccCCCCCCCCeEEEEccCCeEEEEECC-cEEEeeCC-CcccCCCCCCCCCCceeeceEeeecccCCCCcceEEEeccCc
Q psy5940 164 IPRSSLKSSQPLIGVCCGRFHSVVYSSR-EVYTFGIH-AGQLGHSPVTVSSASVIEPKVQATIIREDLPGFIFESNRGTK 241 (278)
Q Consensus 164 i~~~~~~~~~~i~~i~~g~~~~~~l~~~-~vy~wG~n-~gqlG~~~~~~~~~~~~~P~~i~~~~~~~~~~~i~~i~~G~~ 241 (278)
+.. +.+.. |++|+||.+|+++|+++ +||+||.| +||||.+. ......|.++..+.... |++|+||..
T Consensus 271 v~~--~~~~~-v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~----~~~~~~p~~v~~~~~~~----v~~va~G~~ 339 (406)
T 4d9s_A 271 LEA--LSNSF-ISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGN----NLDQCSPVQVRFPDDQK----VVQVSCGWR 339 (406)
T ss_dssp CGG--GTTSC-EEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSS----SSCEEEEEEECCGGGCC----EEEEEECSS
T ss_pred ecc--cCCCC-EEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCC----CCCCccCEEEeccCCCc----EEEEEeCCC
Confidence 774 55566 99999999999999975 99999999 59999998 66778899987665543 999999999
Q ss_pred eEEEEecCCcCeEeecCCCCccCCccchhhhhcc
Q psy5940 242 HSFTAETSLGPEFGGGWTGKKGKRLRSKLEAVKQ 275 (278)
Q Consensus 242 hs~~~lt~~g~v~~wG~ng~~~~~~~~~~~~~~~ 275 (278)
|++ +|+++|+||+||+|..+++|++.......|
T Consensus 340 hs~-alt~~G~v~~wG~n~~GqLG~g~~~~~~~P 372 (406)
T 4d9s_A 340 HTL-AVTERNNVFAWGRGTNGQLGIGESVDRNFP 372 (406)
T ss_dssp EEE-EEETTSCEEEEECCTTSTTCSSSCCCEEEE
T ss_pred eEE-EEeCCCCEEEecCCCCCccCCCCCCCCcCC
Confidence 999 899999999999988777776655444443
No 2
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=1.3e-50 Score=368.16 Aligned_cols=252 Identities=25% Similarity=0.378 Sum_probs=223.5
Q ss_pred cCCCCCCcceeeccCCceEEEecCCC-cEEEEecCCCCcccCCCCCCccCceeeccccCCCEEEEeccCCceEEEeCCCC
Q psy5940 4 MDNEEMRPIDHLIRDRKIDVSSNQFN-EVYIWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCMDKFHSVFVSDDGR 82 (278)
Q Consensus 4 ~~~~~~~~~~v~~~~~~~~i~l~~~g-~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~ 82 (278)
..+++..+++|+|+..|+ +++++++ +||+||.|.+||||.++......|.+++.+.+.+|++|+||..|+++|+++|+
T Consensus 63 ~~l~~~~i~~va~G~~ht-~al~~~gg~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~ 141 (406)
T 4d9s_A 63 SALDGHQIVSVTCGADHT-VAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGE 141 (406)
T ss_dssp GGGTTSCEEEEEECSSEE-EEEETTTTEEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSC
T ss_pred cccCCCCEEEEEeCcceE-EEEECCCCEEEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCc
Confidence 345667899999999999 6667765 99999999999999999888899999999888899999999999999999999
Q ss_pred EEEEeCCCCCcCCCCCCCceeccEEeecCCCCCEEEEEEccCCCcEEEEEEcCCcEEEEeCCCccccCCCCCCCCCCCCe
Q psy5940 83 VWSCGHGQGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCGLNSFHQLGLSPPPSHIVSPT 162 (278)
Q Consensus 83 v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~~~~g~~~~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~p~ 162 (278)
||+||.|.+||||.+.......|.++..+.+.+|++|+| |.+|+++|+++|+||+||.|.+||||.+.. .....|+
T Consensus 142 v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~---G~~hs~alt~~G~v~~wG~n~~GqlG~g~~-~~~~~p~ 217 (406)
T 4d9s_A 142 VQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAA---GAEHTAAVTEDGDLYGWGWGRYGNLGLGDR-TDRLVPE 217 (406)
T ss_dssp EEEEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEE---CSSEEEEEETTSCEEEEECCTTSTTCSSSS-CCEEEEE
T ss_pred EEEeCCCCCccCCCCCCCCcccceEecccCCCcEEEEec---CCCeEEEEeCCCCEEEeeCCCCCCCCCCCC-CCcCccE
Confidence 999999999999999998888999999888889999999 999999999999999999999999999866 4456677
Q ss_pred eeccCCCCCCCCeEEEEccCCeEEEEEC-CcEEEeeCC-CcccCCCCCCCCCCceeeceEeeecccCCCCcceEEEeccC
Q psy5940 163 PIPRSSLKSSQPLIGVCCGRFHSVVYSS-REVYTFGIH-AGQLGHSPVTVSSASVIEPKVQATIIREDLPGFIFESNRGT 240 (278)
Q Consensus 163 ~i~~~~~~~~~~i~~i~~g~~~~~~l~~-~~vy~wG~n-~gqlG~~~~~~~~~~~~~P~~i~~~~~~~~~~~i~~i~~G~ 240 (278)
++. .+.+.+ |++|+||.+|+++|++ ++||+||.| +||||+++ ......|+++..+.... |++|+||.
T Consensus 218 ~v~--~~~~~~-i~~va~G~~ht~~l~~~G~v~~wG~n~~GqlG~g~----~~~~~~p~~v~~~~~~~----v~~i~~G~ 286 (406)
T 4d9s_A 218 RVT--STGGEK-MSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGD----LEDHLIPHKLEALSNSF----ISQISGGW 286 (406)
T ss_dssp ECC--CSTTCC-EEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSS----CCCEEEEEECGGGTTSC----EEEEEECS
T ss_pred Eec--ccCCce-EEEEEECCCcEEEEcCCCCEEEeeCCCCCCCCCCC----CcCccccEEecccCCCC----EEEEEecC
Confidence 775 345556 9999999999999996 599999999 69999998 67788899998776544 99999999
Q ss_pred ceEEEEecCCcCeEeecCCCCccCCccchhhh
Q psy5940 241 KHSFTAETSLGPEFGGGWTGKKGKRLRSKLEA 272 (278)
Q Consensus 241 ~hs~~~lt~~g~v~~wG~ng~~~~~~~~~~~~ 272 (278)
+|++ +|+++|+||+||+|..+++|.+.....
T Consensus 287 ~hs~-alt~~G~v~~wG~n~~GqLG~g~~~~~ 317 (406)
T 4d9s_A 287 RHTM-ALTSDGKLYGWGWNKFGQVGVGNNLDQ 317 (406)
T ss_dssp SEEE-EEETTSCEEEEECCTTSTTCSSSSSCE
T ss_pred CEEE-EEcCCCeEEEeeCCCCCCCCCCCCCCC
Confidence 9999 899999999999998777776544433
No 3
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=6.8e-51 Score=368.12 Aligned_cols=248 Identities=21% Similarity=0.341 Sum_probs=220.4
Q ss_pred cceeeccCCceEEEecCCCcEEEEecCCCCcccCCCCCCccCceeeccccCCCEEEEeccCCceEEEeCCCCEEEEeCCC
Q psy5940 11 PIDHLIRDRKIDVSSNQFNEVYIWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCMDKFHSVFVSDDGRVWSCGHGQ 90 (278)
Q Consensus 11 ~~~v~~~~~~~~i~l~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~n~ 90 (278)
.++|+|+..|+ ++|+++|+||+||.|.+||||.++......|.+++.+.+.+|++|+||..|+++|+++|+||+||.|.
T Consensus 109 ~v~i~~G~~h~-~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~ 187 (389)
T 3kci_A 109 KVAVNSGGKHC-LALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGR 187 (389)
T ss_dssp EEEECTTCSEE-EEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCG
T ss_pred EEEECcCCCeE-EEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCC
Confidence 35677899888 88899999999999999999999988889999999998889999999999999999999999999999
Q ss_pred CCcCCCCCCCceeccEEeecCCCCCEEEEEEccCCC--cEEEEEEcCCcEEEEeCCCccccCCCCCCCCCCCCeeeccCC
Q psy5940 91 GGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQ--DHSVFLMLSGSVFVCGLNSFHQLGLSPPPSHIVSPTPIPRSS 168 (278)
Q Consensus 91 ~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~~~~g~--~~~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~ 168 (278)
+||||.+.......|.+++.+...+|++|+| |. .|+++|+++|+||+||.|.+||||.+.. .....|++++.
T Consensus 188 ~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~---G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~-~~~~~p~~v~~-- 261 (389)
T 3kci_A 188 YGRLGHSDSEDQLKPKLVEALQGHRVVDIAC---GSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGS-DGCKVPMKIDS-- 261 (389)
T ss_dssp GGTTCSSSCCCEEEEEECGGGTTSCEEEEEE---CCSSCEEEEEETTTEEEEEECCGGGTTSSSSC-CCEEEEEECGG--
T ss_pred CCCcCCCCCcccccceEecccCCCeEEEEEE---cCCCcEEEEEccCCEEEEEeCCCCCCCCCCCC-CCccccEEecc--
Confidence 9999999998888999999888889999999 94 8999999999999999999999999865 44567777764
Q ss_pred CCCCCCeEEEEccCCeEEEEEC-CcEEEeeCC-CcccCCCCCCCCCCceeeceEeeecccCCCCcceEEEeccCceEEEE
Q psy5940 169 LKSSQPLIGVCCGRFHSVVYSS-REVYTFGIH-AGQLGHSPVTVSSASVIEPKVQATIIREDLPGFIFESNRGTKHSFTA 246 (278)
Q Consensus 169 ~~~~~~i~~i~~g~~~~~~l~~-~~vy~wG~n-~gqlG~~~~~~~~~~~~~P~~i~~~~~~~~~~~i~~i~~G~~hs~~~ 246 (278)
+.+.. |++|+||.+|+++|++ ++||+||.| +||||++. ......|+++..+.... |++|+||..|++ +
T Consensus 262 ~~~~~-v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~----~~~~~~P~~v~~l~~~~----v~~ia~G~~h~~-a 331 (389)
T 3kci_A 262 LTGLG-VVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGS----DDHVRRPRQVQGLQGKK----VIAIATGSLHCV-C 331 (389)
T ss_dssp GTTSC-EEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSS----CCCEEEEEECGGGTTCC----EEEEEECSSEEE-E
T ss_pred cCCCc-EEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCC----CccccCCeEeccCCCCC----EEEEEeccCeEE-E
Confidence 55556 9999999999999997 499999999 69999998 67788999998776544 999999999999 8
Q ss_pred ecCCcCeEeecCCCCccCCccchhhhhcc
Q psy5940 247 ETSLGPEFGGGWTGKKGKRLRSKLEAVKQ 275 (278)
Q Consensus 247 lt~~g~v~~wG~ng~~~~~~~~~~~~~~~ 275 (278)
++++|+||+||+|..+++|.+......+|
T Consensus 332 l~~~G~v~~wG~n~~GqLG~g~~~~~~~P 360 (389)
T 3kci_A 332 CTEDGEVYTWGDNDEGQLGDGTTNAIQRP 360 (389)
T ss_dssp EETTCCEEEEECCTTSTTCSSSCCCEEEE
T ss_pred ECCCCCEEEeeCCCCCcCCCCCCCCccCc
Confidence 99999999999997777776554444433
No 4
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=2e-49 Score=358.47 Aligned_cols=246 Identities=21% Similarity=0.370 Sum_probs=217.8
Q ss_pred CCCcceeeccCCceEEEecCCCcEEEEecCCCCcccCCCCCCccCceeeccccCC--CEEEEeccCCceEEEeCCCCEEE
Q psy5940 8 EMRPIDHLIRDRKIDVSSNQFNEVYIWGTNANYNLGTGSQQTRDVPELLDSLKRA--SIKQVCMDKFHSVFVSDDGRVWS 85 (278)
Q Consensus 8 ~~~~~~v~~~~~~~~i~l~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~--~i~~v~~g~~~~~~lt~~g~v~~ 85 (278)
...+++|+++..|+ ++|+++|+||+||.|.+||||.++......|.+++.+.+. ++++|+||.+|+++|+++|+||+
T Consensus 52 ~~~i~~i~~G~~~~-~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~ 130 (389)
T 3kci_A 52 TLRPVQLIGGEQTL-FAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYS 130 (389)
T ss_dssp HTCEEEEEEETTEE-EEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEE
T ss_pred CCceEEEEeCCCeE-EEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEE
Confidence 34678899999888 7889999999999999999999998888999999887776 45788999999999999999999
Q ss_pred EeCCCCCcCCCCCCCceeccEEeecCCCCCEEEEEEccCCCcEEEEEEcCCcEEEEeCCCccccCCCCCCCCCCCCeeec
Q psy5940 86 CGHGQGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCGLNSFHQLGLSPPPSHIVSPTPIP 165 (278)
Q Consensus 86 ~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~~~~g~~~~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~p~~i~ 165 (278)
||.|.+||||.+.......|++++.+.+.+|++|+| |..|+++|+++|+||+||.|.+||||.+.. .....|+++.
T Consensus 131 wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~---G~~hs~alt~~G~v~~wG~n~~GqLG~~~~-~~~~~p~~v~ 206 (389)
T 3kci_A 131 WGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAA---GGAHSACVTAAGDLYTWGKGRYGRLGHSDS-EDQLKPKLVE 206 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEE---CSSEEEEEETTSCEEEEECCGGGTTCSSSC-CCEEEEEECG
T ss_pred EeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEe---CcCeEEEEeCCCeEEEeCCCCCCCcCCCCC-cccccceEec
Confidence 999999999999988888999999888889999999 999999999999999999999999999876 4556787776
Q ss_pred cCCCCCCCCeEEEEccC--CeEEEEECC-cEEEeeCC-CcccCCCCCCCCCCceeeceEeeecccCCCCcceEEEeccCc
Q psy5940 166 RSSLKSSQPLIGVCCGR--FHSVVYSSR-EVYTFGIH-AGQLGHSPVTVSSASVIEPKVQATIIREDLPGFIFESNRGTK 241 (278)
Q Consensus 166 ~~~~~~~~~i~~i~~g~--~~~~~l~~~-~vy~wG~n-~gqlG~~~~~~~~~~~~~P~~i~~~~~~~~~~~i~~i~~G~~ 241 (278)
. +.+.+ |++|+||. .|+++++++ +||+||.| +||||.+. ......|.++..+.... |++|+||.+
T Consensus 207 ~--~~~~~-v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~----~~~~~~p~~v~~~~~~~----v~~v~~G~~ 275 (389)
T 3kci_A 207 A--LQGHR-VVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGG----SDGCKVPMKIDSLTGLG----VVKVECGSQ 275 (389)
T ss_dssp G--GTTSC-EEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSS----CCCEEEEEECGGGTTSC----EEEEEEETT
T ss_pred c--cCCCe-EEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCC----CCCccccEEecccCCCc----EEEEeCCCC
Confidence 4 55566 99999995 899999974 99999999 59999998 66778899998776544 999999999
Q ss_pred eEEEEecCCcCeEeecCCCCccCCccchh
Q psy5940 242 HSFTAETSLGPEFGGGWTGKKGKRLRSKL 270 (278)
Q Consensus 242 hs~~~lt~~g~v~~wG~ng~~~~~~~~~~ 270 (278)
|++ +|+++|+||+||+|...++|.+...
T Consensus 276 hs~-alt~~G~v~~wG~n~~GqLG~g~~~ 303 (389)
T 3kci_A 276 FSV-ALTKSGAVYTWGKGDYHRLGHGSDD 303 (389)
T ss_dssp EEE-EEETTSCEEEEECCGGGTTCSSSCC
T ss_pred EEE-EEeCCCeEEEEeCCCCCCCCCCCCc
Confidence 999 8999999999999977666655433
No 5
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.9e-47 Score=349.96 Aligned_cols=246 Identities=21% Similarity=0.278 Sum_probs=207.5
Q ss_pred CCCCcceeeccCCceEEEecCCCcEEEEecCCCCcccCCCCCC-----------------------ccCceeecc--cc-
Q psy5940 7 EEMRPIDHLIRDRKIDVSSNQFNEVYIWGTNANYNLGTGSQQT-----------------------RDVPELLDS--LK- 60 (278)
Q Consensus 7 ~~~~~~~v~~~~~~~~i~l~~~g~v~~wG~n~~gqlG~~~~~~-----------------------~~~p~~i~~--~~- 60 (278)
+...+++|+||..|+ ++|+++|+||+||.|.+||||.+.... ...|.+|+. ++
T Consensus 65 ~~~~i~~va~G~~Ht-~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~ 143 (473)
T 3of7_A 65 DEAKIISFAVGGMHT-LALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPP 143 (473)
T ss_dssp TTTCEEEEEECSSEE-EEEETTCCEEEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHH
T ss_pred CCCCEEEEEeCCCeE-EEEecCCeEEEeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCc
Confidence 566889999999999 788999999999999999999987654 467888875 43
Q ss_pred ---CCCEEEEeccCCceEEEeCCCCEEEEeC--CCCCcCCCCCC--CceeccEEeecCCCCCEEEEEEccCCCcEEEEEE
Q psy5940 61 ---RASIKQVCMDKFHSVFVSDDGRVWSCGH--GQGGRLGLGSE--SSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLM 133 (278)
Q Consensus 61 ---~~~i~~v~~g~~~~~~lt~~g~v~~~G~--n~~gqlg~~~~--~~~~~p~~i~~~~~~~i~~i~~~~~g~~~~~~lt 133 (278)
+.+|++|+||.+|+++|+++|+||+||. |..||||.... .....|.+++.+.+.+|++|+| |.+|+++|+
T Consensus 144 ~~~~~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~---G~~hs~alt 220 (473)
T 3of7_A 144 LAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAP---GKDHILFLD 220 (473)
T ss_dssp HHTTCCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEE---CSSEEEEEE
T ss_pred ccCCCcEEEEEccCCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEe---cCCeEEEEe
Confidence 6799999999999999999999999998 67999998544 3456899998888788999999 999999999
Q ss_pred cCCcEEEEeCCCccccCCCCCCC---CCCCCeeeccCCCCCCCCeEEEEccCCeEEEEEC-CcEEEeeCC-CcccCCCCC
Q psy5940 134 LSGSVFVCGLNSFHQLGLSPPPS---HIVSPTPIPRSSLKSSQPLIGVCCGRFHSVVYSS-REVYTFGIH-AGQLGHSPV 208 (278)
Q Consensus 134 ~~G~v~~~G~n~~gqlg~~~~~~---~~~~p~~i~~~~~~~~~~i~~i~~g~~~~~~l~~-~~vy~wG~n-~gqlG~~~~ 208 (278)
++|+||+||.|.+||||.+.... ....|+++.. .. |++|+||.+|+++|++ |+||+||.| +||||.+..
T Consensus 221 ~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~-----~~-v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~ 294 (473)
T 3of7_A 221 EEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGL-----RH-VKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSED 294 (473)
T ss_dssp TTSCEEEEECCTTSTTSSCCCGGGTTTTCSCEECSC-----CS-EEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSC
T ss_pred CCCeEEEEeCCCCCCCCCCccccccccccCceecCC-----cc-eEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCc
Confidence 99999999999999999875432 2456766642 34 9999999999999997 599999999 699999983
Q ss_pred CCCCCceeeceEeeecccCCCCcceEEEeccCceEEEEecCCcCeEeecCCCCccCCcc
Q psy5940 209 TVSSASVIEPKVQATIIREDLPGFIFESNRGTKHSFTAETSLGPEFGGGWTGKKGKRLR 267 (278)
Q Consensus 209 ~~~~~~~~~P~~i~~~~~~~~~~~i~~i~~G~~hs~~~lt~~g~v~~wG~ng~~~~~~~ 267 (278)
.........|++|..+.... |++|+||..|++ +|+++|+||+||+|..+++|+.
T Consensus 295 ~~~~~~~~~P~~v~~~~~~~----i~~ia~G~~hs~-~lt~~G~v~~wG~n~~GqLG~~ 348 (473)
T 3of7_A 295 VEDGALVTKPKRLALPDNVV----IRSIAAGEHHSL-ILSQDGDLYSCGRLDMFEVGIP 348 (473)
T ss_dssp CCTTCEEEEEEECCCCTTCC----EEEEEECSSEEE-EEETTSCEEEEEECTTCTTCCC
T ss_pred ccCCceeeccccccccCCcc----EEEEEeCCCeEE-EEeCCCeEEEEECCCCCccCCC
Confidence 33234667899988665433 999999999999 8999999999999877666654
No 6
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=2.5e-47 Score=347.30 Aligned_cols=243 Identities=19% Similarity=0.296 Sum_probs=202.7
Q ss_pred CcceeeccCCceEEEecCCCcEEEEec--CCCCcccCCCCCCc-cCceeeccccCCCEEEEeccCCceEEEeCCCCEEEE
Q psy5940 10 RPIDHLIRDRKIDVSSNQFNEVYIWGT--NANYNLGTGSQQTR-DVPELLDSLKRASIKQVCMDKFHSVFVSDDGRVWSC 86 (278)
Q Consensus 10 ~~~~v~~~~~~~~i~l~~~g~v~~wG~--n~~gqlG~~~~~~~-~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~ 86 (278)
.+++|+||..|+ ++|+++|+||+||. |.+||||.++.... ..|.++ +...+|++|+||.+|+++|+++|+||+|
T Consensus 112 ~i~~va~G~~hs-~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v--~~~~~i~~ia~G~~hs~alt~~G~v~~w 188 (413)
T 1a12_A 112 KVVQVSAGDSHT-AALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQV--QLDVPVVKVASGNDHLVMLTADGDLYTL 188 (413)
T ss_dssp CEEEEEECSSEE-EEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEE--CCSSCEEEEEECSSEEEEEETTSCEEEE
T ss_pred cEEEEecCCCeE-EEEcCCCcEEEeeCCcCCCCccCcCCccccccCCEEe--cCCCCEEEEEecCceEEEEcCCCCEEEe
Confidence 678899999998 78899999999999 99999999865543 357766 4556999999999999999999999999
Q ss_pred eCCCCCcCCCCCCC-----------ceeccEEeecC-----CCCCEEEEEEccCCCcEEEEEEcCCcEEEEeCCCccccC
Q psy5940 87 GHGQGGRLGLGSES-----------SVVSPKKLNFE-----KDKDKLGVAMASISQDHSVFLMLSGSVFVCGLNSFHQLG 150 (278)
Q Consensus 87 G~n~~gqlg~~~~~-----------~~~~p~~i~~~-----~~~~i~~i~~~~~g~~~~~~lt~~G~v~~~G~n~~gqlg 150 (278)
|.|.+||||.+... ....|+.+... ...+|++|+| |.+|+++|+++|+||+||.|.+||||
T Consensus 189 G~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~---G~~hs~alt~~G~v~~wG~n~~gqLG 265 (413)
T 1a12_A 189 GCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFC---GAYFTFAISHEGHVYGFGLSNYHQLG 265 (413)
T ss_dssp ECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEE---ETTEEEEEETTCCEEEEECCTTSTTS
T ss_pred eCCCCCccCCCccccccccccccccccccCceEeeccccccCCccEEEEEe---CCCEEEEEeCCCCEEEEeCCCCcCCC
Confidence 99999999987432 12467666543 3468999999 99999999999999999999999999
Q ss_pred CCCCCCCCCCCeeeccCCCCCCCCeEEEEccCCeEEEEEC-CcEEEeeCC-CcccCCCCCCCCCCceeeceEeeecccCC
Q psy5940 151 LSPPPSHIVSPTPIPRSSLKSSQPLIGVCCGRFHSVVYSS-REVYTFGIH-AGQLGHSPVTVSSASVIEPKVQATIIRED 228 (278)
Q Consensus 151 ~~~~~~~~~~p~~i~~~~~~~~~~i~~i~~g~~~~~~l~~-~~vy~wG~n-~gqlG~~~~~~~~~~~~~P~~i~~~~~~~ 228 (278)
.+.. .....|+++......... |++|+||.+|+++|++ ++||+||.| +||||++. .......|++|..+.
T Consensus 266 ~~~~-~~~~~P~~v~~l~~~~~~-v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~---~~~~~~~P~~v~~l~--- 337 (413)
T 1a12_A 266 TPGT-ESCFIPQNLTSFKNSTKS-WVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGE---GAEEKSIPTLISRLP--- 337 (413)
T ss_dssp CSSC-SCEEEEEECGGGCCTTCC-EEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCT---TCCCEEEEEECCSSS---
T ss_pred CCCC-CcccccEEchhccCCCce-EEEEecccceEEEEeCCCCEEEeeCCCCCccCCCC---CCccccCCEEecccC---
Confidence 9866 445778887753222255 9999999999999996 599999999 69999984 255678899887654
Q ss_pred CCcceEEEeccCceEEEEecCCcCeEeecCCCCccCCccchh
Q psy5940 229 LPGFIFESNRGTKHSFTAETSLGPEFGGGWTGKKGKRLRSKL 270 (278)
Q Consensus 229 ~~~~i~~i~~G~~hs~~~lt~~g~v~~wG~ng~~~~~~~~~~ 270 (278)
.|++|+||.+|++ +++++|+||+||+|..+++|.+...
T Consensus 338 ---~v~~v~~G~~hs~-alt~~G~v~~wG~n~~gqLG~g~~~ 375 (413)
T 1a12_A 338 ---AVSSVACGASVGY-AVTKDGRVFAWGMGTNYQLGTGQDE 375 (413)
T ss_dssp ---SEEEEEECSSEEE-EEETTSCEEEEECCTTSTTCSSSCS
T ss_pred ---ceeEEEECcceEE-EEeCCCCEEEecCCCCCCCCCCCCC
Confidence 3999999999999 8999999999999877666655433
No 7
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=1.6e-46 Score=342.95 Aligned_cols=247 Identities=21% Similarity=0.304 Sum_probs=202.8
Q ss_pred cceeeccCCceEEEecCCCcEEEEecCCCCcccCCCCCC--ccCceeeccccCCCEEEEeccCCceEEEeCCCCEEEEeC
Q psy5940 11 PIDHLIRDRKIDVSSNQFNEVYIWGTNANYNLGTGSQQT--RDVPELLDSLKRASIKQVCMDKFHSVFVSDDGRVWSCGH 88 (278)
Q Consensus 11 ~~~v~~~~~~~~i~l~~~g~v~~wG~n~~gqlG~~~~~~--~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~ 88 (278)
+++|+||..|+ ++|+++|+||+||.|.+||||.+.... ...|.++... .+|++|+||.+|+++|+++|+||+||.
T Consensus 77 v~~va~G~~h~-~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~--~~i~~va~G~~hs~al~~~G~v~~wG~ 153 (423)
T 3mvd_K 77 AVDISAGGMHN-LVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLP--GKALCISAGDSHSACLLEDGRVFAWGS 153 (423)
T ss_dssp EEEEEECSSEE-EEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCS--SCEEEEEECSSEEEEEETTSCEEEEEC
T ss_pred ceEEeeCCCeE-EEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCC--CCEEEEEcCcCeEEEEeCCCeEEEEeC
Confidence 68899999998 788999999999999999999997765 5678777643 389999999999999999999999999
Q ss_pred --CCCCcCCCCCCCceeccEEeecCCCCCEEEEEEccCCCcEEEEEEcCCcEEEEeCCCccccCCCCCC----------C
Q psy5940 89 --GQGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCGLNSFHQLGLSPPP----------S 156 (278)
Q Consensus 89 --n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~~~~g~~~~~~lt~~G~v~~~G~n~~gqlg~~~~~----------~ 156 (278)
|.+||||.+.......|.++ +...+|++|+| |.+|+++|+++|+||+||.|.+||||.+... .
T Consensus 154 ~~n~~GqlG~~~~~~~~~p~~~--~~~~~i~~va~---G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~ 228 (423)
T 3mvd_K 154 FRDSHGNMGLTIDGNKRTPIDL--MEGTVCCSIAS---GADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKR 228 (423)
T ss_dssp EECSSSEEESBTTBCEEEEEES--STTCCEEEEEE---CSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTT
T ss_pred CCCCCCCcCcCCCCCCceeeEe--cCCCcEEEEec---CCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccc
Confidence 99999999877766666655 45679999999 9999999999999999999999999986542 1
Q ss_pred CCCCCeeeccCCC--------------------------------------------------CCCCCeEEEEccCCeEE
Q psy5940 157 HIVSPTPIPRSSL--------------------------------------------------KSSQPLIGVCCGRFHSV 186 (278)
Q Consensus 157 ~~~~p~~i~~~~~--------------------------------------------------~~~~~i~~i~~g~~~~~ 186 (278)
....|+++..... .... |++|+||..|++
T Consensus 229 ~~~~p~~v~~~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~-v~~ia~G~~ht~ 307 (423)
T 3mvd_K 229 DLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKD-IRHIAGGQHHTV 307 (423)
T ss_dssp TTSSCEEECCTTCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCS-EEEEEECSSEEE
T ss_pred cccCCeEEeecCCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCC-eEEEEcccCeEE
Confidence 2344554432100 1123 999999999999
Q ss_pred EEEC-CcEEEeeCC-CcccCCCCCCCCCCceeeceEeeecccCCCCcceEEEeccCceEEEEecCCcCeEeecCCCCccC
Q psy5940 187 VYSS-REVYTFGIH-AGQLGHSPVTVSSASVIEPKVQATIIREDLPGFIFESNRGTKHSFTAETSLGPEFGGGWTGKKGK 264 (278)
Q Consensus 187 ~l~~-~~vy~wG~n-~gqlG~~~~~~~~~~~~~P~~i~~~~~~~~~~~i~~i~~G~~hs~~~lt~~g~v~~wG~ng~~~~ 264 (278)
+|++ ++||+||.| +||||.+. .......|+++..+.. .|++|+||.+|++ +++++|+||+||+|..+++
T Consensus 308 alt~~G~v~~wG~n~~GqLG~g~---~~~~~~~p~~v~~l~~-----~v~~ia~G~~hs~-alt~~G~v~~wG~n~~GqL 378 (423)
T 3mvd_K 308 ILTTDLKCSVVGRPEYGRLGLGD---VKDVVEKPTIVKKLTE-----KIVSVGCGEVCSY-AVTIDGKLYSWGSGVNNQL 378 (423)
T ss_dssp EEETTCCEEEEECCGGGTTCSSS---CCSCEEEEEECTTCCS-----CEEEEEEETTEEE-EEETTSCEEEEECCTTSCS
T ss_pred EEeCCCcEEEEECCCCCCCCCCC---ccccccCceEeccCCC-----CEEEEEcCCCeEE-EEcCCCCEEEECCCCCCCC
Confidence 9996 599999999 69999998 2334678888876553 3999999999999 8899999999999987777
Q ss_pred Cccchhhhhcc
Q psy5940 265 RLRSKLEAVKQ 275 (278)
Q Consensus 265 ~~~~~~~~~~~ 275 (278)
|.+.......|
T Consensus 379 G~g~~~~~~~P 389 (423)
T 3mvd_K 379 GVGDGDDELEP 389 (423)
T ss_dssp SSSSSCCEEEE
T ss_pred CCCCCCCcccC
Confidence 76655444444
No 8
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=7.7e-47 Score=344.06 Aligned_cols=243 Identities=23% Similarity=0.325 Sum_probs=202.7
Q ss_pred CCcceeeccCCceEEEecCCCcEEEEecCCCCcccCCCCC--CccCceeeccccCCCEEEEeccCCceEEEeCCCCEEEE
Q psy5940 9 MRPIDHLIRDRKIDVSSNQFNEVYIWGTNANYNLGTGSQQ--TRDVPELLDSLKRASIKQVCMDKFHSVFVSDDGRVWSC 86 (278)
Q Consensus 9 ~~~~~v~~~~~~~~i~l~~~g~v~~wG~n~~gqlG~~~~~--~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~ 86 (278)
..+++|+||..|+ ++|+++|+||+||.|.+||||.+... ....|.++.. + .+|++|+||.+|+++|+++|+||+|
T Consensus 59 ~~i~~va~G~~hs-~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~l-~-~~i~~va~G~~hs~alt~~G~v~~w 135 (413)
T 1a12_A 59 EDVVQAEAGGMHT-VCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVEL-Q-EKVVQVSAGDSHTAALTDDGRVFLW 135 (413)
T ss_dssp SCEEEEEECSSEE-EEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEECCC-C-SCEEEEEECSSEEEEEETTSCEEEE
T ss_pred CCeEEEEeCCCeE-EEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEecC-C-CcEEEEecCCCeEEEEcCCCcEEEe
Confidence 5678899999998 78899999999999999999998763 3568888853 2 3899999999999999999999999
Q ss_pred eC--CCCCcCCCCCCCce-eccEEeecCCCCCEEEEEEccCCCcEEEEEEcCCcEEEEeCCCccccCCCCCCC-------
Q psy5940 87 GH--GQGGRLGLGSESSV-VSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCGLNSFHQLGLSPPPS------- 156 (278)
Q Consensus 87 G~--n~~gqlg~~~~~~~-~~p~~i~~~~~~~i~~i~~~~~g~~~~~~lt~~G~v~~~G~n~~gqlg~~~~~~------- 156 (278)
|. |.+||||.+..... ..|.++. ...+|++|+| |.+|+++|+++|+||+||.|.+||||.+....
T Consensus 136 G~~~n~~GqlG~~~~~~~~~~P~~v~--~~~~i~~ia~---G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~ 210 (413)
T 1a12_A 136 GSFRDNNGVIGLLEPMKKSMVPVQVQ--LDVPVVKVAS---GNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQ 210 (413)
T ss_dssp ECEEETTEEEESSBBTBCEEEEEEEC--CSSCEEEEEE---CSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGG
T ss_pred eCCcCCCCccCcCCccccccCCEEec--CCCCEEEEEe---cCceEEEEcCCCCEEEeeCCCCCccCCCccccccccccc
Confidence 99 99999998866543 3688873 4569999999 99999999999999999999999999865321
Q ss_pred ---CCCCCeeeccCCC---CCCCCeEEEEccCCeEEEEEC-CcEEEeeCC-CcccCCCCCCCCCCceeeceEeeecccCC
Q psy5940 157 ---HIVSPTPIPRSSL---KSSQPLIGVCCGRFHSVVYSS-REVYTFGIH-AGQLGHSPVTVSSASVIEPKVQATIIRED 228 (278)
Q Consensus 157 ---~~~~p~~i~~~~~---~~~~~i~~i~~g~~~~~~l~~-~~vy~wG~n-~gqlG~~~~~~~~~~~~~P~~i~~~~~~~ 228 (278)
....|+.+..... .... |++|+||.+|+++|++ ++||+||.| +||||.+. ......|+.|..+....
T Consensus 211 ~~~~~~~P~~v~~~~~g~~~~~~-i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~----~~~~~~P~~v~~l~~~~ 285 (413)
T 1a12_A 211 GLERLLVPKCVMLKSRGSRGHVR-FQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPG----TESCFIPQNLTSFKNST 285 (413)
T ss_dssp GHHHHHSCEECCCBCSSCCSBCC-EEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSS----CSCEEEEEECGGGCCTT
T ss_pred cccccccCceEeeccccccCCcc-EEEEEeCCCEEEEEeCCCCEEEEeCCCCcCCCCCC----CCcccccEEchhccCCC
Confidence 1246766654221 3345 9999999999999996 599999999 69999998 56678899998776522
Q ss_pred CCcceEEEeccCceEEEEecCCcCeEeecCCCCccCCcc
Q psy5940 229 LPGFIFESNRGTKHSFTAETSLGPEFGGGWTGKKGKRLR 267 (278)
Q Consensus 229 ~~~~i~~i~~G~~hs~~~lt~~g~v~~wG~ng~~~~~~~ 267 (278)
..|++|+||.+|++ +|+++|+||+||+|..+++|.+
T Consensus 286 --~~v~~ia~G~~hs~-al~~~G~v~~wG~n~~GqLG~g 321 (413)
T 1a12_A 286 --KSWVGFSGGQHHTV-CMDSEGKAYSLGRAEYGRLGLG 321 (413)
T ss_dssp --CCEEEEEECSSEEE-EEETTSCEEEEECCGGGTTCSC
T ss_pred --ceEEEEecccceEE-EEeCCCCEEEeeCCCCCccCCC
Confidence 23999999999999 8999999999999876666654
No 9
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-46 Score=348.48 Aligned_cols=245 Identities=21% Similarity=0.309 Sum_probs=202.2
Q ss_pred CCCCcceeeccCCceEEEecCCCcEEEEec--CCCCcccCCCCC--CccCceeeccccCCCEEEEeccCCceEEEeCCCC
Q psy5940 7 EEMRPIDHLIRDRKIDVSSNQFNEVYIWGT--NANYNLGTGSQQ--TRDVPELLDSLKRASIKQVCMDKFHSVFVSDDGR 82 (278)
Q Consensus 7 ~~~~~~~v~~~~~~~~i~l~~~g~v~~wG~--n~~gqlG~~~~~--~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~ 82 (278)
++..+++|+|+..|+ ++|+++|+||+||. |..||||.+... ....|.+++.+.+.+|++|+||..|+++|+++|+
T Consensus 146 ~~~~i~~va~G~~hs-~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~ 224 (473)
T 3of7_A 146 EGHKVVQLAATDNMS-CALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGM 224 (473)
T ss_dssp TTCCEEEEEECSSEE-EEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSC
T ss_pred CCCcEEEEEccCCEE-EEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCe
Confidence 367889999999998 78899999999998 688999985443 4578888888888889999999999999999999
Q ss_pred EEEEeCCCCCcCCCCCCCc----eeccEEeecCCCCCEEEEEEccCCCcEEEEEEcCCcEEEEeCCCccccCCCCCCC--
Q psy5940 83 VWSCGHGQGGRLGLGSESS----VVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCGLNSFHQLGLSPPPS-- 156 (278)
Q Consensus 83 v~~~G~n~~gqlg~~~~~~----~~~p~~i~~~~~~~i~~i~~~~~g~~~~~~lt~~G~v~~~G~n~~gqlg~~~~~~-- 156 (278)
||+||.|.+||||.+.... ...|.++.. .+|++|+| |.+|+++|+++|+||+||.|.+||||.+....
T Consensus 225 v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~---~~v~~Ia~---G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~ 298 (473)
T 3of7_A 225 VFAWGNGQQNQLGRKVMERFRLKTLDPRPFGL---RHVKYIAS---GENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDG 298 (473)
T ss_dssp EEEEECCTTSTTSSCCCGGGTTTTCSCEECSC---CSEEEEEE---CSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTT
T ss_pred EEEEeCCCCCCCCCCccccccccccCceecCC---cceEEEec---CCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCC
Confidence 9999999999999986543 346776643 58999999 99999999999999999999999999886532
Q ss_pred -CCCCCeeeccCCCCCCCCeEEEEccCCeEEEEEC-CcEEEeeCC-CcccCCCCCC----------CCCCceeeceEeee
Q psy5940 157 -HIVSPTPIPRSSLKSSQPLIGVCCGRFHSVVYSS-REVYTFGIH-AGQLGHSPVT----------VSSASVIEPKVQAT 223 (278)
Q Consensus 157 -~~~~p~~i~~~~~~~~~~i~~i~~g~~~~~~l~~-~~vy~wG~n-~gqlG~~~~~----------~~~~~~~~P~~i~~ 223 (278)
....|+++. .+.+.. |++|+||..|+++|++ ++||+||.| +||||.+... ........|..+..
T Consensus 299 ~~~~~P~~v~--~~~~~~-i~~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~ 375 (473)
T 3of7_A 299 ALVTKPKRLA--LPDNVV-IRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNN 375 (473)
T ss_dssp CEEEEEEECC--CCTTCC-EEEEEECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCS
T ss_pred ceeecccccc--ccCCcc-EEEEEeCCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCC
Confidence 235677776 345556 9999999999999997 599999999 5999987521 11223445666653
Q ss_pred cccCCCCcceEEEeccCceEEEEecCCcCeEeecCCCCccCCccc
Q psy5940 224 IIREDLPGFIFESNRGTKHSFTAETSLGPEFGGGWTGKKGKRLRS 268 (278)
Q Consensus 224 ~~~~~~~~~i~~i~~G~~hs~~~lt~~g~v~~wG~ng~~~~~~~~ 268 (278)
+. .|++|+||.+|++ +|+++|+||+||+|..+++|++.
T Consensus 376 ~~------~v~~Ia~G~~hs~-al~~~G~vy~wG~n~~GqLG~g~ 413 (473)
T 3of7_A 376 VP------KFKSVAAGSHHSV-AVAQNGIAYSWGFGETYAVGLGP 413 (473)
T ss_dssp SC------CEEEEEECSSEEE-EEETTSCEEEEECCTTCTTCCCS
T ss_pred CC------ceEEEEeCCCeEE-EEeCCCcEEEeeCCCCCCCCCCC
Confidence 32 3999999999999 89999999999998776666654
No 10
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=6.3e-45 Score=332.37 Aligned_cols=242 Identities=18% Similarity=0.273 Sum_probs=196.8
Q ss_pred CCCCcceeeccCCceEEEecCCCcEEEEecCCCCcccCCCC-CCccCceeeccccCCCEEEEeccCCceEEEeCCCCEEE
Q psy5940 7 EEMRPIDHLIRDRKIDVSSNQFNEVYIWGTNANYNLGTGSQ-QTRDVPELLDSLKRASIKQVCMDKFHSVFVSDDGRVWS 85 (278)
Q Consensus 7 ~~~~~~~v~~~~~~~~i~l~~~g~v~~wG~n~~gqlG~~~~-~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~ 85 (278)
....+.+|+++..|. ++++++|+||+||.|.+||||.++. .....|.+++.+. .|++|+||..|+++|+++|+||+
T Consensus 22 ~~~~~~~ia~g~~~~-~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~--~v~~va~G~~h~~~l~~~G~v~~ 98 (423)
T 3mvd_K 22 PKAKRARIAFHLELP-KRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIP--DAVDISAGGMHNLVLTKSGDIYS 98 (423)
T ss_dssp -------CCCCCCCC-CCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCS--SEEEEEECSSEEEEEETTSCEEE
T ss_pred ccceeeEEecCCccc-eeecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEccCCC--CceEEeeCCCeEEEEeCCCeEEE
Confidence 345567889999999 7889999999999999999999965 3457788887765 69999999999999999999999
Q ss_pred EeCCCCCcCCCCCCCc--eeccEEeecCCCCCEEEEEEccCCCcEEEEEEcCCcEEEEeC--CCccccCCCCCCCCCCCC
Q psy5940 86 CGHGQGGRLGLGSESS--VVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCGL--NSFHQLGLSPPPSHIVSP 161 (278)
Q Consensus 86 ~G~n~~gqlg~~~~~~--~~~p~~i~~~~~~~i~~i~~~~~g~~~~~~lt~~G~v~~~G~--n~~gqlg~~~~~~~~~~p 161 (278)
||.|.+||||.+.... ...|.++.... +|++|+| |.+|+++|+++|+||+||. |.+||||.+... . .|
T Consensus 99 wG~n~~GqLG~~~~~~~~~~~P~~v~~~~--~i~~va~---G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~-~--~~ 170 (423)
T 3mvd_K 99 FGCNDEGALGRDTSEDGSESKPDLIDLPG--KALCISA---GDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDG-N--KR 170 (423)
T ss_dssp EECCSSSTTCSCCCSTTSSSSCEECCCSS--CEEEEEE---CSSEEEEEETTSCEEEEECEECSSSEEESBTTB-C--EE
T ss_pred eECCCCcCCCCCCcCCccccCCeEEcCCC--CEEEEEc---CcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCC-C--Cc
Confidence 9999999999987654 56888887544 8999999 9999999999999999999 999999987552 2 34
Q ss_pred eeeccCCCCCCCCeEEEEccCCeEEEEEC-CcEEEeeCC-CcccCCCCCCC-------CCCceeeceEeeecccCCCCcc
Q psy5940 162 TPIPRSSLKSSQPLIGVCCGRFHSVVYSS-REVYTFGIH-AGQLGHSPVTV-------SSASVIEPKVQATIIREDLPGF 232 (278)
Q Consensus 162 ~~i~~~~~~~~~~i~~i~~g~~~~~~l~~-~~vy~wG~n-~gqlG~~~~~~-------~~~~~~~P~~i~~~~~~~~~~~ 232 (278)
+++.. +.+.. |++|+||.+|+++|++ ++||+||.| +||||.+.... .......|..+..+....
T Consensus 171 ~p~~~--~~~~~-i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~---- 243 (423)
T 3mvd_K 171 TPIDL--MEGTV-CCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKP---- 243 (423)
T ss_dssp EEEES--STTCC-EEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCC----
T ss_pred eeeEe--cCCCc-EEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCCcc----
Confidence 44443 34455 9999999999999996 599999999 59999986321 123456788887554433
Q ss_pred eEEEeccCceEEEEecCCcCeEeecCCCCccCCc
Q psy5940 233 IFESNRGTKHSFTAETSLGPEFGGGWTGKKGKRL 266 (278)
Q Consensus 233 i~~i~~G~~hs~~~lt~~g~v~~wG~ng~~~~~~ 266 (278)
|++|+||..|++++++.+|+||+||.|...+++.
T Consensus 244 v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~ 277 (423)
T 3mvd_K 244 FEAIWATNYCTFMRESQTQVIWATGLNNFKQLAH 277 (423)
T ss_dssp EEEEEEETTEEEEEETTTCCEEEEEECTTCTTSS
T ss_pred EEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCC
Confidence 9999999999996668999999999997777766
No 11
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=2e-39 Score=280.66 Aligned_cols=190 Identities=18% Similarity=0.165 Sum_probs=158.2
Q ss_pred CCcceeeccCCceEEEecCCCcEEEEecCCCCcccCCCCCCccCceeeccccCCCEEEEeccCCceEEEeCCCCEEEEeC
Q psy5940 9 MRPIDHLIRDRKIDVSSNQFNEVYIWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCMDKFHSVFVSDDGRVWSCGH 88 (278)
Q Consensus 9 ~~~~~v~~~~~~~~i~l~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~ 88 (278)
..+++|+|+..|+ ++|+ +|+||+||.|.+||||.. .+ ...+|++|+||.+|+++|+ +|+||+||.
T Consensus 24 ~~i~~ia~G~~h~-~~l~-~G~v~~wG~n~~Gqlg~p--------~~----~~~~i~~ia~G~~hs~~l~-~G~v~~wG~ 88 (282)
T 3qhy_B 24 SGVDAIAGGYFHG-LALK-GGKVLGWGANLNGQLTMP--------AA----TQSGVDAIAAGNYHSLALK-DGEVIAWGG 88 (282)
T ss_dssp SSCCEEEECSSEE-EEEE-TTEEEEEECCSSSTTSCC--------GG----GGSCCCEEEECSSEEEEEE-TTEEEEEEC
T ss_pred CCCcEEEeCCCeE-EEEE-CCEEEEEeCCCCCCCCCC--------cc----CCCCEEEEEeCCCEEEEEE-CCEEEEeeC
Confidence 3678999999998 6778 999999999999999952 11 1237999999999999996 999999999
Q ss_pred CCCCcCCCCCCCceeccEEeecCCCCCEEEEEEccCCCcEEEEEEcCCcEEEEeCCCccccCCCCCCCCCCCCeeeccCC
Q psy5940 89 GQGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCGLNSFHQLGLSPPPSHIVSPTPIPRSS 168 (278)
Q Consensus 89 n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~~~~g~~~~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~ 168 (278)
|.+||||. |.++ ..+|++|+| |.+|+++|+ +|+||+||.|.+||||... +
T Consensus 89 n~~Gqlg~--------P~~~----~~~v~~ia~---G~~hs~al~-~G~v~~wG~n~~gqlg~~~---------~----- 138 (282)
T 3qhy_B 89 NEDGQTTV--------PAEA----RSGVDAIAA---GAWASYALK-DGKVIAWGDDSDGQTTVPA---------E----- 138 (282)
T ss_dssp CTTSTTCC--------CGGG----SSSEEEEEE---ETTEEEEEE-TTEEEEEECCTTSTTSCCG---------G-----
T ss_pred CCCCCCCC--------Cccc----CCCeEEEEC---cCCEEEEEe-CCeEEEecCCCCCcCCCCc---------c-----
Confidence 99999985 3333 248999999 999999999 9999999999999998421 1
Q ss_pred CCCCCCeEEEEccCCeEEEEECCcEEEeeCC-CcccCCCCCCCCCCceeeceEeeecccCCCCcceEEEeccCceEEEEe
Q psy5940 169 LKSSQPLIGVCCGRFHSVVYSSREVYTFGIH-AGQLGHSPVTVSSASVIEPKVQATIIREDLPGFIFESNRGTKHSFTAE 247 (278)
Q Consensus 169 ~~~~~~i~~i~~g~~~~~~l~~~~vy~wG~n-~gqlG~~~~~~~~~~~~~P~~i~~~~~~~~~~~i~~i~~G~~hs~~~l 247 (278)
.... |++|+||.+|++++++++||+||.| +||||... .+ . ..|++|+||.+|++ +|
T Consensus 139 -~~~~-i~~i~~G~~~~~~l~~G~v~~wG~n~~gqlg~p~------------~~----~----~~v~~i~~G~~hs~-al 195 (282)
T 3qhy_B 139 -AQSG-VTALDGGVYTALAVKNGGVIAWGDNYFGQTTVPA------------EA----Q----SGVDDVAGGIFHSL-AL 195 (282)
T ss_dssp -GGSS-EEEEEECSSEEEEEETTEEEEEECCTTSTTSCCG------------GG----G----SSEEEEEECSSEEE-EE
T ss_pred -CCCC-eEEEEcccCEEEEEECCEEEEecCCCCCCCCCce------------ec----C----CCeEEEEecCCEEE-EE
Confidence 1123 9999999999999998899999999 59998433 11 1 23999999999999 66
Q ss_pred cCCcCeEeecCCCCccCCcc
Q psy5940 248 TSLGPEFGGGWTGKKGKRLR 267 (278)
Q Consensus 248 t~~g~v~~wG~ng~~~~~~~ 267 (278)
++|+||+||+|...++++.
T Consensus 196 -~~G~v~~wG~n~~gqlg~p 214 (282)
T 3qhy_B 196 -KDGKVIAWGDNRYKQTTVP 214 (282)
T ss_dssp -ETTEEEEEECCTTSTTCCC
T ss_pred -ECCeEEEEECCCCCCCCCC
Confidence 7999999999988777754
No 12
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=5.5e-39 Score=277.94 Aligned_cols=189 Identities=18% Similarity=0.203 Sum_probs=158.3
Q ss_pred CCcceeeccCCceEEEecCCCcEEEEecCCCCcccCCCCCCccCceeeccccCCCEEEEeccCCceEEEeCCCCEEEEeC
Q psy5940 9 MRPIDHLIRDRKIDVSSNQFNEVYIWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCMDKFHSVFVSDDGRVWSCGH 88 (278)
Q Consensus 9 ~~~~~v~~~~~~~~i~l~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~ 88 (278)
..+++|+|+..|+ ++|+ +|+||+||.|.+||||. |.++ ..+|++|+||.+|+++|+ +|+||+||.
T Consensus 63 ~~i~~ia~G~~hs-~~l~-~G~v~~wG~n~~Gqlg~--------P~~~----~~~v~~ia~G~~hs~al~-~G~v~~wG~ 127 (282)
T 3qhy_B 63 SGVDAIAAGNYHS-LALK-DGEVIAWGGNEDGQTTV--------PAEA----RSGVDAIAAGAWASYALK-DGKVIAWGD 127 (282)
T ss_dssp SCCCEEEECSSEE-EEEE-TTEEEEEECCTTSTTCC--------CGGG----SSSEEEEEEETTEEEEEE-TTEEEEEEC
T ss_pred CCEEEEEeCCCEE-EEEE-CCEEEEeeCCCCCCCCC--------Cccc----CCCeEEEECcCCEEEEEe-CCeEEEecC
Confidence 4688999999999 6666 99999999999999985 3333 238999999999999999 999999999
Q ss_pred CCCCcCCCCCCCceeccEEeecCCCCCEEEEEEccCCCcEEEEEEcCCcEEEEeCCCccccCCCCCCCCCCCCeeeccCC
Q psy5940 89 GQGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCGLNSFHQLGLSPPPSHIVSPTPIPRSS 168 (278)
Q Consensus 89 n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~~~~g~~~~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~ 168 (278)
|.+||||.+. +. ..+|++|+| |.+|+++|+ +|+||+||.|.+||||. |.++
T Consensus 128 n~~gqlg~~~----------~~--~~~i~~i~~---G~~~~~~l~-~G~v~~wG~n~~gqlg~---------p~~~---- 178 (282)
T 3qhy_B 128 DSDGQTTVPA----------EA--QSGVTALDG---GVYTALAVK-NGGVIAWGDNYFGQTTV---------PAEA---- 178 (282)
T ss_dssp CTTSTTSCCG----------GG--GSSEEEEEE---CSSEEEEEE-TTEEEEEECCTTSTTSC---------CGGG----
T ss_pred CCCCcCCCCc----------cC--CCCeEEEEc---ccCEEEEEE-CCEEEEecCCCCCCCCC---------ceec----
Confidence 9999998421 11 348999999 999999999 89999999999999983 2222
Q ss_pred CCCCCCeEEEEccCCeEEEEECCcEEEeeCC-CcccCCCCCCCCCCceeeceEeeecccCCCCcceEEEeccCceEEEEe
Q psy5940 169 LKSSQPLIGVCCGRFHSVVYSSREVYTFGIH-AGQLGHSPVTVSSASVIEPKVQATIIREDLPGFIFESNRGTKHSFTAE 247 (278)
Q Consensus 169 ~~~~~~i~~i~~g~~~~~~l~~~~vy~wG~n-~gqlG~~~~~~~~~~~~~P~~i~~~~~~~~~~~i~~i~~G~~hs~~~l 247 (278)
... |++|+||.+|+++|++++||+||.| +||||... . .+ ..|++|+||..|++ ++
T Consensus 179 --~~~-v~~i~~G~~hs~al~~G~v~~wG~n~~gqlg~p~----~----------~~------~~v~~i~~G~~h~~-al 234 (282)
T 3qhy_B 179 --QSG-VDDVAGGIFHSLALKDGKVIAWGDNRYKQTTVPT----E----------AL------SGVSAIASGEWYSL-AL 234 (282)
T ss_dssp --GSS-EEEEEECSSEEEEEETTEEEEEECCTTSTTCCCG----G----------GG------SSCCEEEECSSCEE-EE
T ss_pred --CCC-eEEEEecCCEEEEEECCeEEEEECCCCCCCCCCc----c----------cC------CCceEEEcCCCEEE-EE
Confidence 223 9999999999999965699999999 59998654 1 01 12899999999999 78
Q ss_pred cCCcCeEeecCCCCccCCc
Q psy5940 248 TSLGPEFGGGWTGKKGKRL 266 (278)
Q Consensus 248 t~~g~v~~wG~ng~~~~~~ 266 (278)
+ +|+||+||+|...+.++
T Consensus 235 ~-~g~v~~wG~n~~gq~~v 252 (282)
T 3qhy_B 235 K-NGKVIAWGSSRTAPSSV 252 (282)
T ss_dssp E-TTEEEEESTTCCCCGGG
T ss_pred E-CCEEEEecCCCCccccC
Confidence 8 99999999998877665
No 13
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=96.58 E-value=0.0079 Score=49.66 Aligned_cols=72 Identities=15% Similarity=0.109 Sum_probs=54.3
Q ss_pred CcceeeccCCceEEEecCCCcEEEEecCCCCcccCCCCCCccCceeeccccCCCEEEEeccCCceEEEeCCCCEEEEeCC
Q psy5940 10 RPIDHLIRDRKIDVSSNQFNEVYIWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCMDKFHSVFVSDDGRVWSCGHG 89 (278)
Q Consensus 10 ~~~~v~~~~~~~~i~l~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~n 89 (278)
+++.-+.|.-.+.+++--+++++.||.+.+||+-+... ..++.++.+|.++++-++.-..+-.||..
T Consensus 309 n~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~t-------------agPfla~~AG~~fTVTVn~~nyv~FWGDS 375 (400)
T 4gbf_A 309 NPIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDH-------------AGPYIQLAAGHNFTVTVNTLNQVMFWGDS 375 (400)
T ss_dssp SCCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGG-------------GCCEEEEEECSSEEEEEETTCCEEEEECC
T ss_pred CccccccccccceEEEecCceeEEeccCCCCceecCCC-------------cchHHhHhccCCeEEEEeceeeEEEecCC
Confidence 44555555533445667889999999999999865422 12689999999999999999999999987
Q ss_pred CCCcC
Q psy5940 90 QGGRL 94 (278)
Q Consensus 90 ~~gql 94 (278)
...-|
T Consensus 376 PDNSL 380 (400)
T 4gbf_A 376 PDNSL 380 (400)
T ss_dssp TTSTT
T ss_pred CCcce
Confidence 65443
No 14
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=95.11 E-value=0.043 Score=45.33 Aligned_cols=72 Identities=17% Similarity=0.181 Sum_probs=60.0
Q ss_pred CCEEEEeccCCceEEEeCCCCEEEEeCCCCCcCCCCCCCceeccEEeecCCCCCEEEEEEccCCCcEEEEEEcCCcEEEE
Q psy5940 62 ASIKQVCMDKFHSVFVSDDGRVWSCGHGQGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVC 141 (278)
Q Consensus 62 ~~i~~v~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~~~~g~~~~~~lt~~G~v~~~ 141 (278)
..|.+|+-...|..++--|++|+.+|.++.||+-.+.. ..+..++.+ |.+|++-+..-..+--|
T Consensus 309 n~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~t-------------agPfla~~A---G~~fTVTVn~~nyv~FW 372 (400)
T 4gbf_A 309 NPIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDH-------------AGPYIQLAA---GHNFTVTVNTLNQVMFW 372 (400)
T ss_dssp SCCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGG-------------GCCEEEEEE---CSSEEEEEETTCCEEEE
T ss_pred CccccccccccceEEEecCceeEEeccCCCCceecCCC-------------cchHHhHhc---cCCeEEEEeceeeEEEe
Confidence 47889999999999999999999999999999854322 237889999 99999999999999999
Q ss_pred eCCCcccc
Q psy5940 142 GLNSFHQL 149 (278)
Q Consensus 142 G~n~~gql 149 (278)
|+.-...|
T Consensus 373 GDSPDNSL 380 (400)
T 4gbf_A 373 GDSPDNSL 380 (400)
T ss_dssp ECCTTSTT
T ss_pred cCCCCcce
Confidence 98654443
No 15
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=81.37 E-value=19 Score=28.88 Aligned_cols=67 Identities=9% Similarity=-0.050 Sum_probs=42.3
Q ss_pred CCEEEEeccCCceEEEeCCCCEEEEeCCCCCcCCCCCCCceeccEEeecCCCCCEEEEEEccCCCcEEEEEEcCCcEEEE
Q psy5940 62 ASIKQVCMDKFHSVFVSDDGRVWSCGHGQGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVC 141 (278)
Q Consensus 62 ~~i~~v~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~~~~g~~~~~~lt~~G~v~~~ 141 (278)
..|..++......+.-..+|.|+.|-. + .+..........+..+.......+..+.-..+|.|+.|
T Consensus 105 ~~i~~~~~~~~~l~~~~~d~~i~~~d~---~-----------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~ 170 (313)
T 3odt_A 105 GNVCSLSFQDGVVISGSWDKTAKVWKE---G-----------SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLW 170 (313)
T ss_dssp SCEEEEEEETTEEEEEETTSEEEEEET---T-----------EEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred cCEEEEEecCCEEEEEeCCCCEEEEcC---C-----------cEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEE
Confidence 367778776666777778899999851 1 11111112244666666533345677777889999999
Q ss_pred e
Q psy5940 142 G 142 (278)
Q Consensus 142 G 142 (278)
-
T Consensus 171 d 171 (313)
T 3odt_A 171 Q 171 (313)
T ss_dssp E
T ss_pred e
Confidence 4
No 16
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=80.33 E-value=24 Score=29.24 Aligned_cols=119 Identities=10% Similarity=0.039 Sum_probs=71.0
Q ss_pred EEecCCCcEEEEecCCCCcccCCCCCCccCceeeccccCCCEEEEeccC--CceEEEeCCCCEEEEeCCCCCcCCCCCCC
Q psy5940 23 VSSNQFNEVYIWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCMDK--FHSVFVSDDGRVWSCGHGQGGRLGLGSES 100 (278)
Q Consensus 23 i~l~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g~--~~~~~lt~~g~v~~~G~n~~gqlg~~~~~ 100 (278)
+++|++|.+|.+-..+--.+|.+..-.. .+...++.+|+.+.... ...+++|++|.+.-.-.+++...+.+...
T Consensus 131 ll~T~~G~~~r~~~~eip~~gR~a~Gv~----~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkG 206 (276)
T 3no0_A 131 LLFTKKGRVARFSVREVPPSTPGARGVQ----GIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKG 206 (276)
T ss_dssp EEEETTSEEEEEEGGGSCBCCTTCCCEE----CCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCC
T ss_pred EEEECCCEEEEEEhhhCCCcCCCCCCEE----EEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcc
Confidence 5679999999997765544443221111 12223445777765443 46788899998887776555443332211
Q ss_pred ceeccEEeecCCCCCEEEEEEccCCCcEEEEEEcCCcEEE--EeCCCccccCCC
Q psy5940 101 SVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFV--CGLNSFHQLGLS 152 (278)
Q Consensus 101 ~~~~p~~i~~~~~~~i~~i~~~~~g~~~~~~lt~~G~v~~--~G~n~~gqlg~~ 152 (278)
.... .++..++.+..+ -+....+++|++|++.- +-.++....|+.
T Consensus 207 v~~i------~~~~~lv~~~~~-~~~~~i~~~t~~G~~ir~~~~~~~i~~~~R~ 253 (276)
T 3no0_A 207 TEVS------GTKDTLVDLIPI-KEEVELLITTKNGKAFYDKINQKDIPLSTKK 253 (276)
T ss_dssp EECC------CSSSCEEEEEEE-SSEEEEEEEETTSCEEEEEEEGGGSCBCCTT
T ss_pred eEEE------cCCCcEEEEEEe-CCCCEEEEEcCCCeEEEeeeCHHHCCCcCCC
Confidence 1111 223456555431 15678899999999988 877766666654
No 17
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=76.47 E-value=29 Score=28.40 Aligned_cols=119 Identities=13% Similarity=0.107 Sum_probs=66.5
Q ss_pred EEecCCCcEEEEecCCCCcccCCCCCCccCceeeccccCCCEEEEecc--CCceEEEeCCCCEEEEeCCCCCcCCCCCCC
Q psy5940 23 VSSNQFNEVYIWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCMD--KFHSVFVSDDGRVWSCGHGQGGRLGLGSES 100 (278)
Q Consensus 23 i~l~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g--~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~ 100 (278)
+++|+.|++|.+-..+--.. ..........++..++.+|+.+... ..+.+++|++|.+.-.-..++-.....
T Consensus 48 l~~T~~Gr~~~~~~~elp~~---r~~G~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~--- 121 (256)
T 1zvt_A 48 VFVDSTGRSYAIDPITLPSA---RGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRA--- 121 (256)
T ss_dssp EEEETTSEEEEECGGGSCCS---SSCCEEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTT---
T ss_pred EEEeCCCeEEEEEHHHCCCc---CCCCeEeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcC---
Confidence 56799999999976542111 0111111112333345688888763 344677899998877665443111100
Q ss_pred ceeccEEeecC-CCCCEEEEEEccCCCcEEEEEEcCCcEEEEeCCCccccCC
Q psy5940 101 SVVSPKKLNFE-KDKDKLGVAMASISQDHSVFLMLSGSVFVCGLNSFHQLGL 151 (278)
Q Consensus 101 ~~~~p~~i~~~-~~~~i~~i~~~~~g~~~~~~lt~~G~v~~~G~n~~gqlg~ 151 (278)
-..+..+ .+..++.+..+.-+..+.+++|++|++.-+-.++.-.+|.
T Consensus 122 ----G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~~ei~~~gR 169 (256)
T 1zvt_A 122 ----GKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK 169 (256)
T ss_dssp ----CEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEEGGGSCBCSS
T ss_pred ----ceEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEEEHHHCCCcCc
Confidence 0111111 2334444333111567899999999999988777666665
No 18
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=76.15 E-value=31 Score=32.60 Aligned_cols=20 Identities=25% Similarity=0.298 Sum_probs=15.4
Q ss_pred CCcEEEEEEcCCcEEEEeCC
Q psy5940 125 SQDHSVFLMLSGSVFVCGLN 144 (278)
Q Consensus 125 g~~~~~~lt~~G~v~~~G~n 144 (278)
-..|++++..+|+||++|-.
T Consensus 490 R~~h~~~~~~~~~iyv~GG~ 509 (695)
T 2zwa_A 490 RFRHSACSLPDGNVLILGGV 509 (695)
T ss_dssp CBSCEEEECTTSCEEEECCB
T ss_pred cccceEEEEcCCEEEEECCC
Confidence 46677777668999999854
No 19
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=72.98 E-value=23 Score=29.32 Aligned_cols=18 Identities=22% Similarity=0.180 Sum_probs=13.9
Q ss_pred CCeEEEEECCcEEEeeCC
Q psy5940 182 RFHSVVYSSREVYTFGIH 199 (278)
Q Consensus 182 ~~~~~~l~~~~vy~wG~n 199 (278)
..|+++..+++||++|-.
T Consensus 235 ~~~~~~~~~~~l~v~GG~ 252 (315)
T 4asc_A 235 SSLSLVSLVGTLYAIGGF 252 (315)
T ss_dssp BSCEEEEETTEEEEEEEE
T ss_pred cceeEEEECCEEEEECCc
Confidence 356777778899999864
No 20
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=71.43 E-value=25 Score=28.78 Aligned_cols=18 Identities=17% Similarity=0.529 Sum_probs=14.3
Q ss_pred CCeEEEEECCcEEEeeCC
Q psy5940 182 RFHSVVYSSREVYTFGIH 199 (278)
Q Consensus 182 ~~~~~~l~~~~vy~wG~n 199 (278)
..|++++.+++||++|-.
T Consensus 192 ~~~~~~~~~~~i~v~GG~ 209 (306)
T 3ii7_A 192 KNHGLVFVKDKIFAVGGQ 209 (306)
T ss_dssp BSCEEEEETTEEEEECCE
T ss_pred hcceEEEECCEEEEEeCC
Confidence 467777778899999863
No 21
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=67.57 E-value=59 Score=27.92 Aligned_cols=108 Identities=9% Similarity=-0.025 Sum_probs=62.4
Q ss_pred CEEEEeccCCceEEEeCCCCEEEEeCCCCCcCCCCCCCceeccEEeecCCCCCEEEEEEccCCCcEEEEEEcCCcEEEEe
Q psy5940 63 SIKQVCMDKFHSVFVSDDGRVWSCGHGQGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCG 142 (278)
Q Consensus 63 ~i~~v~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~~~~g~~~~~~lt~~G~v~~~G 142 (278)
.|..++......+.-..||.|..|-..... ...+..........|..++. ..++.+.-..+|.|..|-
T Consensus 215 ~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~---------~~~~~~~~~~~~~~v~~~~~---~~~~l~s~~~dg~i~vwd 282 (435)
T 1p22_A 215 AVLHLRFNNGMMVTCSKDRSIAVWDMASPT---------DITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWN 282 (435)
T ss_dssp CEEEEECCTTEEEEEETTSCEEEEECSSSS---------CCEEEEEECCCSSCEEEEEE---ETTEEEEEETTSEEEEEE
T ss_pred cEEEEEEcCCEEEEeeCCCcEEEEeCCCCC---------CceeeeEecCCCCcEEEEEe---CCCEEEEEeCCCeEEEEE
Confidence 566777666666666778888888643211 11111222223457778887 888888888999999995
Q ss_pred CCCccccCCCCCCCCCCCCeeeccCCCCCCCCeEEEEccCCeEEEEEC-CcEEEeeC
Q psy5940 143 LNSFHQLGLSPPPSHIVSPTPIPRSSLKSSQPLIGVCCGRFHSVVYSS-REVYTFGI 198 (278)
Q Consensus 143 ~n~~gqlg~~~~~~~~~~p~~i~~~~~~~~~~i~~i~~g~~~~~~l~~-~~vy~wG~ 198 (278)
...... ...+. ..... |..++......++-.. +.|..|-.
T Consensus 283 ~~~~~~------------~~~~~---~~~~~-v~~~~~~~~~l~~g~~dg~i~iwd~ 323 (435)
T 1p22_A 283 TSTCEF------------VRTLN---GHKRG-IACLQYRDRLVVSGSSDNTIRLWDI 323 (435)
T ss_dssp TTTCCE------------EEEEE---CCSSC-EEEEEEETTEEEEEETTSCEEEEET
T ss_pred CCcCcE------------EEEEc---CCCCc-EEEEEeCCCEEEEEeCCCeEEEEEC
Confidence 432111 11111 11222 6666665555554454 48888865
No 22
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=67.03 E-value=58 Score=27.57 Aligned_cols=121 Identities=9% Similarity=0.065 Sum_probs=67.8
Q ss_pred EEecCCCcEEEEecCCCCcccCCCCCCccCceeeccccCCCEEEEeccC-----CceEEEeCCCCEEEEeCCCCCcCCCC
Q psy5940 23 VSSNQFNEVYIWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCMDK-----FHSVFVSDDGRVWSCGHGQGGRLGLG 97 (278)
Q Consensus 23 i~l~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g~-----~~~~~lt~~g~v~~~G~n~~gqlg~~ 97 (278)
+++|+.|++|.+-..+--..+... ........++..++.+|+.+..-. ...+++|++|.+.-.-..++-....
T Consensus 54 l~fT~~Gr~~~~~~~elp~~~r~a-~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r- 131 (323)
T 1wp5_A 54 LLFTNKGNYLYCPVHELPDIRWKD-LGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRY- 131 (323)
T ss_dssp EEEETTSEEEEEEGGGSCBCCTTS-CCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCC-
T ss_pred EEEECCCEEEEEEHHHCcCCCCCC-CCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccc-
Confidence 567999999999776433333211 111111122223455777765433 3478889999888765544321110
Q ss_pred CCCceeccE-EeecCCCCCEEEEEEccCCCcEEEEEEcCCcEEEEeCCCccccCC
Q psy5940 98 SESSVVSPK-KLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCGLNSFHQLGL 151 (278)
Q Consensus 98 ~~~~~~~p~-~i~~~~~~~i~~i~~~~~g~~~~~~lt~~G~v~~~G~n~~gqlg~ 151 (278)
..-. .+...++..++.+..+ -+.++.+++|++|+++-+-.++.-..|.
T Consensus 132 -----~~G~~ai~l~e~d~lv~~~~~-~~~~~i~l~T~~G~~irf~~~ev~~~gR 180 (323)
T 1wp5_A 132 -----SKPLTGINLKNDDQVVDVHLT-DGMNELFLVTHNGYALWFDESEVSIVGV 180 (323)
T ss_dssp -----SSCEECSCCCTTCCEEEEEEE-CSCSEEEEEETTSEEEEEEGGGSCBCCS
T ss_pred -----cCceEEEEeCCCCEEEEEEEe-CCCCEEEEEeCCCcEEEEEHHHCcccCC
Confidence 0011 1111223455554331 1677899999999999998776655555
No 23
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=66.17 E-value=82 Score=29.93 Aligned_cols=126 Identities=12% Similarity=0.105 Sum_probs=70.4
Q ss_pred ccCCceEEEecCCCcEEEEecCCCCcccCCCCCCccCceeeccccCCCEEEEeccC--CceEEEeCCCCEEEEeCCCCCc
Q psy5940 16 IRDRKIDVSSNQFNEVYIWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCMDK--FHSVFVSDDGRVWSCGHGQGGR 93 (278)
Q Consensus 16 ~~~~~~~i~l~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g~--~~~~~lt~~g~v~~~G~n~~gq 93 (278)
|.....-++.|+.|++|..-...--. +..........++..++.+|..+-... .+.++.|++|.+.-.-...+-.
T Consensus 511 ~~t~d~ll~ft~~Gr~y~~~~~~lP~---~~~~G~~i~~ll~l~~~e~i~~~~~~~~~~~l~~~T~~G~vk~~~l~~~~~ 587 (716)
T 1zvu_A 511 GKSNQPVVFVDSTGRSYAIDPITLPS---ARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVA 587 (716)
T ss_dssp CCSSSCEEEEETTSEEEEECTTTSCC---CC---CBSTTTSCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCC
T ss_pred ecCCCEEEEEecCCcEEEEEeeeccc---ccccCeeHHhccCCCCCCeEEEEEEecCCceEEEEeCCceEEEecHHHhcc
Confidence 44444446689999999986544222 111112222223333556888887653 4467778889888665433210
Q ss_pred CCCCCCCceeccE-EeecCCCCCEEEEEEccCCCcEEEEEEcCCcEEEEeCCCccccCC
Q psy5940 94 LGLGSESSVVSPK-KLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCGLNSFHQLGL 151 (278)
Q Consensus 94 lg~~~~~~~~~p~-~i~~~~~~~i~~i~~~~~g~~~~~~lt~~G~v~~~G~n~~gqlg~ 151 (278)
. ...-. .+...++..++.+..+.-+..+.+++|.+|++.-|-.++.-.+|.
T Consensus 588 ~-------~~~g~~ai~L~~~d~lv~~~~~~~~~~~v~l~t~~g~~lrf~~~~v~~~gr 639 (716)
T 1zvu_A 588 R-------NRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK 639 (716)
T ss_dssp C-------STTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEESTTSCBCSS
T ss_pred c-------CccceEEEeeCCCCEEEEEEEecCCCCEEEEEeCCCeEEEEEHHHCCccCc
Confidence 0 00111 111122445544433212678999999999999998877655655
No 24
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=65.09 E-value=64 Score=27.37 Aligned_cols=152 Identities=13% Similarity=0.085 Sum_probs=81.6
Q ss_pred EEecCCCcEEEEecCCCCcccCCCCCCccCceeeccccCCCEEEEeccC-----CceEEEeCCCCEEEEeCCCCCcCCCC
Q psy5940 23 VSSNQFNEVYIWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCMDK-----FHSVFVSDDGRVWSCGHGQGGRLGLG 97 (278)
Q Consensus 23 i~l~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g~-----~~~~~lt~~g~v~~~G~n~~gqlg~~ 97 (278)
+++|+.|++|..-..+--..+... ........++..++.+|+.+.... ...+++|++|.+.-.-...+-...
T Consensus 57 l~fT~~Gr~y~~~~~~lp~~~r~~-~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~-- 133 (327)
T 3uc1_A 57 LFFTTQGRVYRAKAYDLPEASRTA-RGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNR-- 133 (327)
T ss_dssp EEEETTSEEEEEEGGGSCBCCSSS-CCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCC--
T ss_pred EEEeCCCeEEEEEHHHCcCCCccC-CCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccc--
Confidence 557999999998755433322111 111111123333556888887654 457888999988876544332110
Q ss_pred CCCceeccEEeecCCCCCEEEEEEccCCCcEEEEEEcCCcEEEEeCC--CccccCCCCCCCCCCCCeeeccCCCCCCCCe
Q psy5940 98 SESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCGLN--SFHQLGLSPPPSHIVSPTPIPRSSLKSSQPL 175 (278)
Q Consensus 98 ~~~~~~~p~~i~~~~~~~i~~i~~~~~g~~~~~~lt~~G~v~~~G~n--~~gqlg~~~~~~~~~~p~~i~~~~~~~~~~i 175 (278)
..-...+...++..++.+... .+..+.+++|++|++|-+-.. +.-..|...... ..+.+ ..+.. |
T Consensus 134 ----r~G~~~i~lke~D~lv~~~~~-~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv-----~~i~L--~~~d~-V 200 (327)
T 3uc1_A 134 ----SGGIVAVNLRDNDELVGAVLC-SAGDDLLLVSANGQSIRFSATDEALRPMGRATSGV-----QGMRF--NIDDR-L 200 (327)
T ss_dssp ----SSCEESCBCCTTCCEEEEEEE-CTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCE-----ESSCC--CTTCC-E
T ss_pred ----cCceEEEEECCCCEEEEEEEe-cCCCEEEEEECCCeEEEEECcccccCcCCcCCCCe-----eeecC--CCCCE-E
Confidence 000111112234556555432 266789999999999999877 554445432211 11221 23444 8
Q ss_pred EEEEccC--CeEEEEEC
Q psy5940 176 IGVCCGR--FHSVVYSS 190 (278)
Q Consensus 176 ~~i~~g~--~~~~~l~~ 190 (278)
+.+..-. .+.+.+++
T Consensus 201 v~~~~~~~~~~ll~~T~ 217 (327)
T 3uc1_A 201 LSLNVVREGTYLLVATS 217 (327)
T ss_dssp EEEEECCTTCEEEEEET
T ss_pred EEEEEECCCCEEEEEeC
Confidence 8776653 24455554
No 25
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=63.53 E-value=44 Score=27.48 Aligned_cols=17 Identities=0% Similarity=-0.058 Sum_probs=13.6
Q ss_pred CCeEEEEECCcEEEeeC
Q psy5940 182 RFHSVVYSSREVYTFGI 198 (278)
Q Consensus 182 ~~~~~~l~~~~vy~wG~ 198 (278)
..|+++..+++||++|-
T Consensus 188 ~~~~~~~~~~~iyv~GG 204 (315)
T 4asc_A 188 SLFGATVHDGRIIVAAG 204 (315)
T ss_dssp BSCEEEEETTEEEEEEE
T ss_pred hceEEEEECCEEEEEec
Confidence 46777777889999986
No 26
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=61.01 E-value=79 Score=27.09 Aligned_cols=110 Identities=15% Similarity=0.037 Sum_probs=64.6
Q ss_pred CCEEEEeccCCceEEEeCCCCEEEEeCCCCCcCCCCCCCceeccEEeecCCCCCEEEEEEccCCCcEEEEEEcCCcEEEE
Q psy5940 62 ASIKQVCMDKFHSVFVSDDGRVWSCGHGQGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVC 141 (278)
Q Consensus 62 ~~i~~v~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~~~~g~~~~~~lt~~G~v~~~ 141 (278)
..|..++......+.-..||.|..|-....- . ...+. .....|..++. .....+.-..+|.|..|
T Consensus 174 ~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~---------~--~~~~~-~h~~~v~~l~~---~~~~l~s~s~dg~i~vw 238 (435)
T 1p22_A 174 GSVLCLQYDERVIITGSSDSTVRVWDVNTGE---------M--LNTLI-HHCEAVLHLRF---NNGMMVTCSKDRSIAVW 238 (435)
T ss_dssp SCEEEEECCSSEEEEEETTSCEEEEESSSCC---------E--EEEEC-CCCSCEEEEEC---CTTEEEEEETTSCEEEE
T ss_pred CcEEEEEECCCEEEEEcCCCeEEEEECCCCc---------E--EEEEc-CCCCcEEEEEE---cCCEEEEeeCCCcEEEE
Confidence 3688888866666666789999999754221 0 11111 22457888887 88888888999999999
Q ss_pred eCCCccccCCCCCCCCCCCCeeeccCCCCCCCCeEEEEccCCeEEEEEC-CcEEEeeCC
Q psy5940 142 GLNSFHQLGLSPPPSHIVSPTPIPRSSLKSSQPLIGVCCGRFHSVVYSS-REVYTFGIH 199 (278)
Q Consensus 142 G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~~~~i~~i~~g~~~~~~l~~-~~vy~wG~n 199 (278)
-...... ..+.... ...... |..++......++-.. +.|..|=..
T Consensus 239 d~~~~~~----------~~~~~~~--~~~~~~-v~~~~~~~~~l~s~~~dg~i~vwd~~ 284 (435)
T 1p22_A 239 DMASPTD----------ITLRRVL--VGHRAA-VNVVDFDDKYIVSASGDRTIKVWNTS 284 (435)
T ss_dssp ECSSSSC----------CEEEEEE--CCCSSC-EEEEEEETTEEEEEETTSEEEEEETT
T ss_pred eCCCCCC----------ceeeeEe--cCCCCc-EEEEEeCCCEEEEEeCCCeEEEEECC
Confidence 5432110 0011111 111223 7777765555555554 488888653
No 27
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=60.02 E-value=78 Score=26.70 Aligned_cols=114 Identities=11% Similarity=-0.011 Sum_probs=61.0
Q ss_pred ccCCceEEEe--cCCCcEEEEecCCCCcccCCCCCCccCceeeccc--cCCCEEEEeccC---CceEEEeCCCCEEEEeC
Q psy5940 16 IRDRKIDVSS--NQFNEVYIWGTNANYNLGTGSQQTRDVPELLDSL--KRASIKQVCMDK---FHSVFVSDDGRVWSCGH 88 (278)
Q Consensus 16 ~~~~~~~i~l--~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~--~~~~i~~v~~g~---~~~~~lt~~g~v~~~G~ 88 (278)
+......+++ ..+|.|+.|-....+.+.. .+..+ ....|..++... ...+.-..||.|..|-.
T Consensus 42 ~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~----------~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~ 111 (402)
T 2aq5_A 42 VNPKFMALICEASGGGAFLVLPLGKTGRVDK----------NVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEI 111 (402)
T ss_dssp ECSSEEEEEBCCSSSCCEEEEETTCCEECCT----------TCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEEC
T ss_pred ECCCeEEEEEEEcCCCEEEEEECccCCCCCC----------CCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEc
Confidence 3444443432 5678999997655544311 11111 123677777654 33444467899999976
Q ss_pred CCCCcCCCCCCCceeccEEeecCCCCCEEEEEEccCCCcEEEEEEcCCcEEEEeCC
Q psy5940 89 GQGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCGLN 144 (278)
Q Consensus 89 n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~~~~g~~~~~~lt~~G~v~~~G~n 144 (278)
...+... ....|..........|..++.-..+.+..+.-..+|.|+.|-..
T Consensus 112 ~~~~~~~-----~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~ 162 (402)
T 2aq5_A 112 PDGGLVL-----PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVG 162 (402)
T ss_dssp CTTCCSS-----CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETT
T ss_pred cCCCCcc-----ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECC
Confidence 5432211 11122111112245777777722223456666788999999654
No 28
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=56.20 E-value=58 Score=28.38 Aligned_cols=64 Identities=16% Similarity=0.173 Sum_probs=42.6
Q ss_pred EEEEeccCCceEEEeCCCCEEEEeCCCCCcCCCCCCCceeccEEeecCCCCCEEEEEEccCCCcEEEEEEcCCcEEEEeC
Q psy5940 64 IKQVCMDKFHSVFVSDDGRVWSCGHGQGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCGL 143 (278)
Q Consensus 64 i~~v~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~~~~g~~~~~~lt~~G~v~~~G~ 143 (278)
|.+|++ ....+++..++.|..|-.....+. ...... ...+.++.+ -....++++.+|.|+.|=.
T Consensus 90 V~~l~f-d~~~L~v~~~~~l~v~dv~sl~~~-----------~~~~~~-~~~v~~i~~---~~p~~av~~~dG~L~v~dl 153 (388)
T 1xip_A 90 VIFVCF-HGDQVLVSTRNALYSLDLEELSEF-----------RTVTSF-EKPVFQLKN---VNNTLVILNSVNDLSALDL 153 (388)
T ss_dssp EEEEEE-ETTEEEEEESSEEEEEESSSTTCE-----------EEEEEC-SSCEEEEEE---CSSEEEEEETTSEEEEEET
T ss_pred eeEEEE-CCCEEEEEcCCcEEEEEchhhhcc-----------Ccccee-ecceeeEEe---cCCCEEEEECCCCEEEEEc
Confidence 999999 777888888899999875443211 111111 234666666 5555777889999998843
No 29
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=53.01 E-value=67 Score=26.24 Aligned_cols=17 Identities=12% Similarity=0.245 Sum_probs=13.6
Q ss_pred CCeEEEEECCcEEEeeC
Q psy5940 182 RFHSVVYSSREVYTFGI 198 (278)
Q Consensus 182 ~~~~~~l~~~~vy~wG~ 198 (278)
..|++++.+++||++|-
T Consensus 254 ~~~~~~~~~~~i~v~GG 270 (308)
T 1zgk_A 254 SALGITVHQGRIYVLGG 270 (308)
T ss_dssp BSCEEEEETTEEEEECC
T ss_pred cceEEEEECCEEEEEcC
Confidence 35677777889999986
No 30
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=52.82 E-value=90 Score=25.21 Aligned_cols=18 Identities=22% Similarity=0.200 Sum_probs=14.0
Q ss_pred CCeEEEEECCcEEEeeCC
Q psy5940 182 RFHSVVYSSREVYTFGIH 199 (278)
Q Consensus 182 ~~~~~~l~~~~vy~wG~n 199 (278)
..|+++..+++||++|-.
T Consensus 243 ~~~~~~~~~~~i~v~GG~ 260 (302)
T 2xn4_A 243 RNAGVCAVNGLLYVVGGD 260 (302)
T ss_dssp BSCEEEEETTEEEEECCB
T ss_pred ccCeEEEECCEEEEECCc
Confidence 356777778899999874
No 31
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=52.77 E-value=92 Score=25.29 Aligned_cols=29 Identities=7% Similarity=-0.082 Sum_probs=17.7
Q ss_pred CEEEEEEccCCCcEEEEEEcCCcEEEEeCC
Q psy5940 115 DKLGVAMASISQDHSVFLMLSGSVFVCGLN 144 (278)
Q Consensus 115 ~i~~i~~~~~g~~~~~~lt~~G~v~~~G~n 144 (278)
.+..++. +....+.++-+.+|.|+.|-..
T Consensus 177 ~~~~~~~-~~~~~~l~~~~~dg~i~i~d~~ 205 (369)
T 3zwl_B 177 AATVAGW-STKGKYIIAGHKDGKISKYDVS 205 (369)
T ss_dssp CEEEEEE-CGGGCEEEEEETTSEEEEEETT
T ss_pred ceeEEEE-cCCCCEEEEEcCCCEEEEEECC
Confidence 5555554 1123456666788999999654
No 32
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=52.64 E-value=77 Score=25.95 Aligned_cols=17 Identities=12% Similarity=0.116 Sum_probs=13.4
Q ss_pred CCeEEEEECCcEEEeeC
Q psy5940 182 RFHSVVYSSREVYTFGI 198 (278)
Q Consensus 182 ~~~~~~l~~~~vy~wG~ 198 (278)
..|++++.+++||++|-
T Consensus 198 ~~~~~~~~~~~iyv~GG 214 (318)
T 2woz_A 198 SMFGVAIHKGKIVIAGG 214 (318)
T ss_dssp BSCEEEEETTEEEEEEE
T ss_pred ccceEEEECCEEEEEcC
Confidence 45677777889999985
No 33
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=51.91 E-value=87 Score=24.78 Aligned_cols=148 Identities=10% Similarity=-0.044 Sum_probs=76.3
Q ss_pred CEEEEec---cCCceEEEeCCCCEEEEeCCCCCcCCCCCCCceeccEEeecCCCCCEEEEEEccCCCcEEEEEEcCCcEE
Q psy5940 63 SIKQVCM---DKFHSVFVSDDGRVWSCGHGQGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVF 139 (278)
Q Consensus 63 ~i~~v~~---g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~~~~g~~~~~~lt~~G~v~ 139 (278)
.+..++. .....+.-..+|.|+.|-.. .....+.......+..++... ....++-..+|.|+
T Consensus 144 ~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~-------------~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~dg~i~ 208 (313)
T 3odt_A 144 SVWDAKVVSFSENKFLTASADKTIKLWQND-------------KVIKTFSGIHNDVVRHLAVVD--DGHFISCSNDGLIK 208 (313)
T ss_dssp CEEEEEEEETTTTEEEEEETTSCEEEEETT-------------EEEEEECSSCSSCEEEEEEEE--TTEEEEEETTSEEE
T ss_pred ceeEEEEccCCCCEEEEEECCCCEEEEecC-------------ceEEEEeccCcccEEEEEEcC--CCeEEEccCCCeEE
Confidence 4555554 45556666788999998511 111122222344666665511 22366677888999
Q ss_pred EEeCCCccccCCCCCCCCCCCCeeeccCCCCCCCCeEEEEccCCeEEEE-EC-CcEEEeeCCCcccCCCCCCCCCCceee
Q psy5940 140 VCGLNSFHQLGLSPPPSHIVSPTPIPRSSLKSSQPLIGVCCGRFHSVVY-SS-REVYTFGIHAGQLGHSPVTVSSASVIE 217 (278)
Q Consensus 140 ~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~~~~i~~i~~g~~~~~~l-~~-~~vy~wG~n~gqlG~~~~~~~~~~~~~ 217 (278)
.|-...... ...+. ..... |..++...+..++. .. +.|+.|-...+
T Consensus 209 i~d~~~~~~------------~~~~~---~~~~~-i~~~~~~~~~~l~~~~~dg~v~iwd~~~~---------------- 256 (313)
T 3odt_A 209 LVDMHTGDV------------LRTYE---GHESF-VYCIKLLPNGDIVSCGEDRTVRIWSKENG---------------- 256 (313)
T ss_dssp EEETTTCCE------------EEEEE---CCSSC-EEEEEECTTSCEEEEETTSEEEEECTTTC----------------
T ss_pred EEECCchhh------------hhhhh---cCCce-EEEEEEecCCCEEEEecCCEEEEEECCCC----------------
Confidence 995532111 11111 11223 77777664433333 33 59999954221
Q ss_pred ceEeeecccCCCCcceEEEeccCceEEEEecCCcCeEeecCCC
Q psy5940 218 PKVQATIIREDLPGFIFESNRGTKHSFTAETSLGPEFGGGWTG 260 (278)
Q Consensus 218 P~~i~~~~~~~~~~~i~~i~~G~~hs~~~lt~~g~v~~wG~ng 260 (278)
+.+..+.... ..|..++.-.+..+++-..+|.++.|-.+.
T Consensus 257 -~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 257 -SLKQVITLPA--ISIWSVDCMSNGDIIVGSSDNLVRIFSQEK 296 (313)
T ss_dssp -CEEEEEECSS--SCEEEEEECTTSCEEEEETTSCEEEEESCG
T ss_pred -ceeEEEeccC--ceEEEEEEccCCCEEEEeCCCcEEEEeCCC
Confidence 1111221111 226666654444455677889998887654
No 34
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=50.30 E-value=65 Score=29.88 Aligned_cols=20 Identities=20% Similarity=0.160 Sum_probs=15.0
Q ss_pred CcEEEEEEcCCcEEEEeCCC
Q psy5940 126 QDHSVFLMLSGSVFVCGLNS 145 (278)
Q Consensus 126 ~~~~~~lt~~G~v~~~G~n~ 145 (278)
..+++++..+|+||++|-..
T Consensus 244 ~~~~~~~~~~g~lyv~GG~~ 263 (656)
T 1k3i_A 244 FCPGISMDGNGQIVVTGGND 263 (656)
T ss_dssp SSCEEEECTTSCEEEECSSS
T ss_pred ccccccCCCCCCEEEeCCCC
Confidence 34456777899999998743
No 35
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=49.53 E-value=1.4e+02 Score=27.64 Aligned_cols=55 Identities=18% Similarity=0.133 Sum_probs=31.8
Q ss_pred ceEEEeCCCCEEEEeCCCCCcCCCCCCCcee-----ccEEeecCCCCCEEEEEEccCCCcEEEEEEcCCcEEEEeC
Q psy5940 73 HSVFVSDDGRVWSCGHGQGGRLGLGSESSVV-----SPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCGL 143 (278)
Q Consensus 73 ~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~-----~p~~i~~~~~~~i~~i~~~~~g~~~~~~lt~~G~v~~~G~ 143 (278)
+++++..+|+||.+|-.... ....+ ....+..+. .. -..|++++..+|+||++|-
T Consensus 246 ~~~~~~~~g~lyv~GG~~~~------~v~~yd~~t~~W~~~~~~~-------~~---R~~~s~~~~~dg~iyv~GG 305 (656)
T 1k3i_A 246 PGISMDGNGQIVVTGGNDAK------KTSLYDSSSDSWIPGPDMQ-------VA---RGYQSSATMSDGRVFTIGG 305 (656)
T ss_dssp CEEEECTTSCEEEECSSSTT------CEEEEEGGGTEEEECCCCS-------SC---CSSCEEEECTTSCEEEECC
T ss_pred ccccCCCCCCEEEeCCCCCC------ceEEecCcCCceeECCCCC-------cc---ccccceEEecCCeEEEEeC
Confidence 34666789999999853221 11111 112222111 02 4567877777899999987
No 36
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=47.70 E-value=1.3e+02 Score=25.67 Aligned_cols=107 Identities=12% Similarity=-0.011 Sum_probs=61.3
Q ss_pred CEEEEeccCC--ceEEEeCCCCEEEEeCCCCCcCCCCCCCceeccEEeecCCCCCEEEEEEccCCCcEEEEEEcCCcEEE
Q psy5940 63 SIKQVCMDKF--HSVFVSDDGRVWSCGHGQGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFV 140 (278)
Q Consensus 63 ~i~~v~~g~~--~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~~~~g~~~~~~lt~~G~v~~ 140 (278)
.|..++.... ..+.-..||.|+.|-.... .+...-......|..++. ...+.+.-..+|.|..
T Consensus 312 ~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~------------~~~~~~~~h~~~v~~~~~---~~~~l~s~s~dg~v~v 376 (464)
T 3v7d_B 312 RIYSTIYDHERKRCISASMDTTIRIWDLENG------------ELMYTLQGHTALVGLLRL---SDKFLVSAAADGSIRG 376 (464)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEETTTT------------EEEEEECCCSSCEEEEEE---CSSEEEEEETTSEEEE
T ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCC------------cEEEEEeCCCCcEEEEEE---cCCEEEEEeCCCcEEE
Confidence 5666665443 4455567889999965321 111111123457888888 8888888899999999
Q ss_pred EeCCCccccCCCCCCCCCCCCeeeccCCCCCCCCeEEEEccCCeEEEEECCcEEEeeCC
Q psy5940 141 CGLNSFHQLGLSPPPSHIVSPTPIPRSSLKSSQPLIGVCCGRFHSVVYSSREVYTFGIH 199 (278)
Q Consensus 141 ~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~~~~i~~i~~g~~~~~~l~~~~vy~wG~n 199 (278)
|-.....+. .... ...... +..+.......++-.++.|+.|=..
T Consensus 377 wd~~~~~~~------------~~~~--~~~~~~-~~~~~~~~~~l~~~~dg~i~iwd~~ 420 (464)
T 3v7d_B 377 WDANDYSRK------------FSYH--HTNLSA-ITTFYVSDNILVSGSENQFNIYNLR 420 (464)
T ss_dssp EETTTCCEE------------EEEE--CTTCCC-EEEEEECSSEEEEEETTEEEEEETT
T ss_pred EECCCCcee------------eeec--CCCCcc-EEEEEeCCCEEEEecCCeEEEEECC
Confidence 965432111 1111 111122 5555555554444456688888653
No 37
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=46.33 E-value=1.3e+02 Score=25.13 Aligned_cols=159 Identities=8% Similarity=0.065 Sum_probs=85.7
Q ss_pred EEecCCCcEEEEecCCCCcccCCCCCCccCceeeccccCCCEEEEecc-----CCceEEEeCCCCEEEEeCCCCCcCCCC
Q psy5940 23 VSSNQFNEVYIWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCMD-----KFHSVFVSDDGRVWSCGHGQGGRLGLG 97 (278)
Q Consensus 23 i~l~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g-----~~~~~~lt~~g~v~~~G~n~~gqlg~~ 97 (278)
+++|+.|.+|.+-..+--..+... ........+...++.+|..+... ..+.+++|++|.++-.-...+-.. .
T Consensus 62 l~~T~~G~~~~~~~~~ip~~~r~~-~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~-r- 138 (312)
T 1suu_A 62 FMISNEGKLYLINAYEIKDSSRAS-KGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAV-K- 138 (312)
T ss_dssp EEEETTSEEEEEEGGGSCC--------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----
T ss_pred EEEECCCeEEEEEHHHCCCCCccC-CCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhcc-C-
Confidence 667999999999765332222111 00111122333455678777654 345788999999998876544211 0
Q ss_pred CCCceeccEE-eecCCCCCEEEEEEccCCCcEEEEEEcCCcEEEEeCCCccccCCCCCCCCCCCCeeeccCCCCCCCCeE
Q psy5940 98 SESSVVSPKK-LNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCGLNSFHQLGLSPPPSHIVSPTPIPRSSLKSSQPLI 176 (278)
Q Consensus 98 ~~~~~~~p~~-i~~~~~~~i~~i~~~~~g~~~~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~~~~i~ 176 (278)
..-.. +...++..++.+... -+..+.+++|++|.+.-+-.++.-..|...... +-+.+ ..+.. |+
T Consensus 139 -----~~G~~~i~L~~~d~lv~~~~~-~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv-----~~i~L--~~~d~-vv 204 (312)
T 1suu_A 139 -----SRGVIVIKLNDKDFVTSAEIV-FKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGV-----CGMKL--KEGDL-FV 204 (312)
T ss_dssp -------CEECBCCCTTCCEEEEEEE-CTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCE-----ECCCC--CTTCC-EE
T ss_pred -----CCcEEEEecCCCCEEEEEEEe-CCCCEEEEEeCCCcEEEEEHHHccccCCCCCCe-----EeEEe--CCCCE-EE
Confidence 00011 122225577766542 256789999999999998877665555532211 11111 12344 66
Q ss_pred EEEc--cCCeEEEEEC-CcEEEeeC
Q psy5940 177 GVCC--GRFHSVVYSS-REVYTFGI 198 (278)
Q Consensus 177 ~i~~--g~~~~~~l~~-~~vy~wG~ 198 (278)
.+.. ...+.+++++ |.....-.
T Consensus 205 ~~~~v~~~~~l~~vt~~G~~kr~~~ 229 (312)
T 1suu_A 205 KVLSVKENPYLLIVSENGYGKRLNM 229 (312)
T ss_dssp EEEECTTCSEEEEEETTSEEEEEEG
T ss_pred EEEEECCCCeEEEEECCCceEEEEH
Confidence 6644 2344566665 45444444
No 38
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=45.84 E-value=99 Score=25.01 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=14.0
Q ss_pred CCeEEEEECCcEEEeeCC
Q psy5940 182 RFHSVVYSSREVYTFGIH 199 (278)
Q Consensus 182 ~~~~~~l~~~~vy~wG~n 199 (278)
..|+++..++++|++|-.
T Consensus 141 ~~~~~~~~~~~iyv~GG~ 158 (306)
T 3ii7_A 141 CSHGMVEANGLIYVCGGS 158 (306)
T ss_dssp BSCEEEEETTEEEEECCE
T ss_pred ceeEEEEECCEEEEECCC
Confidence 466777778899999963
No 39
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=45.46 E-value=1.4e+02 Score=25.23 Aligned_cols=126 Identities=7% Similarity=0.075 Sum_probs=69.6
Q ss_pred cCCceEEEecCCCcEEEEecC--CCCcccCCCCCCccCceeeccccCCCEEEEeccC--CceEEEeCCCCEEEEeCCCCC
Q psy5940 17 RDRKIDVSSNQFNEVYIWGTN--ANYNLGTGSQQTRDVPELLDSLKRASIKQVCMDK--FHSVFVSDDGRVWSCGHGQGG 92 (278)
Q Consensus 17 ~~~~~~i~l~~~g~v~~wG~n--~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g~--~~~~~lt~~g~v~~~G~n~~g 92 (278)
...++ +++|+.|++|.+-.. +--.+|....-. ..|...++.+|+.+..-. .+.+++|++|.+.-.-...+-
T Consensus 156 ~~d~i-ll~T~~G~~~rf~~~~~eip~~gr~a~Gv----~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~ 230 (327)
T 3uc1_A 156 AGDDL-LLVSANGQSIRFSATDEALRPMGRATSGV----QGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYP 230 (327)
T ss_dssp TTCEE-EEEETTSEEEEEECCTTTSCCCCTTSBCE----ESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSC
T ss_pred CCCEE-EEEECCCeEEEEECcccccCcCCcCCCCe----eeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHcc
Confidence 33444 557999999999876 433333221111 113333455787776543 357788999977666544443
Q ss_pred cCCCCCCCceeccEEeecCC-CCCEEEEEEccCCCcEEEEEEcCCcEEEEeCCCccccCCC
Q psy5940 93 RLGLGSESSVVSPKKLNFEK-DKDKLGVAMASISQDHSVFLMLSGSVFVCGLNSFHQLGLS 152 (278)
Q Consensus 93 qlg~~~~~~~~~p~~i~~~~-~~~i~~i~~~~~g~~~~~~lt~~G~v~~~G~n~~gqlg~~ 152 (278)
..+.+..... .+...+ +..++.+..+ -+....+++|++|++.-+-..+....|+.
T Consensus 231 ~~~R~~~G~~----~~~l~~~~d~lv~~~~~-~~~~~i~l~T~~G~~ir~~~~~i~~~gR~ 286 (327)
T 3uc1_A 231 VQGRGGKGVL----TVMYDRRRGRLVGALIV-DDDSELYAVTSGGGVIRTAARQVRKAGRQ 286 (327)
T ss_dssp BCCTTSCCEE----SSCCCTTTCSEEEEEEE-CTTCEEEEEEGGGCEEEEEGGGSCBCCTT
T ss_pred ccCcCCCcEE----EEEecCCCCeEEEEEEe-CCCccEEEEcCCCeEEEEehhhccccCCC
Confidence 2222211111 011111 2345554331 15678999999999988876666555554
No 40
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=44.00 E-value=1.2e+02 Score=24.15 Aligned_cols=73 Identities=16% Similarity=0.139 Sum_probs=39.3
Q ss_pred EeccCCceEEEeCCCCEEEEeCCCCCcCCCCCCCceeccEEeecCCCCCEEEEEEccCCC-cEEEEEEcCCcEEEEeCC
Q psy5940 67 VCMDKFHSVFVSDDGRVWSCGHGQGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQ-DHSVFLMLSGSVFVCGLN 144 (278)
Q Consensus 67 v~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~~~~g~-~~~~~lt~~G~v~~~G~n 144 (278)
+..+.-..++++.||+++..+......+...... ...+.... .....|..++. .. ...++...+|.|..|-..
T Consensus 7 ~~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~h~~~v~~~~~---~~~~~~l~~~~dg~i~iw~~~ 80 (337)
T 1gxr_A 7 MGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPR-HARQINTL-NHGEVVCAVTI---SNPTRHVYTGGKGCVKVWDIS 80 (337)
T ss_dssp EEEEECCEEEECSSSCEEECCCCTTSSSSTTCCS-EEEEEEEE-CCSSCCCEEEE---CSSSSEEEEECBSEEEEEETT
T ss_pred ccCCceeEEEECCCCCEEEeecCCCcEeccccCC-ccccceec-cCCCceEEEEE---ecCCcEEEEcCCCeEEEEECC
Confidence 3344556788899999998876544332222111 11222221 22446666665 32 223344448889998554
No 41
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=42.57 E-value=1.3e+02 Score=24.25 Aligned_cols=81 Identities=7% Similarity=-0.097 Sum_probs=43.6
Q ss_pred CCEEEEeccCC--ceEEEeCCCCEEEEeCCCCCcCC-------CC-C-C-----C-ceecc-EEeecCCCCCEEEEEEcc
Q psy5940 62 ASIKQVCMDKF--HSVFVSDDGRVWSCGHGQGGRLG-------LG-S-E-----S-SVVSP-KKLNFEKDKDKLGVAMAS 123 (278)
Q Consensus 62 ~~i~~v~~g~~--~~~~lt~~g~v~~~G~n~~gqlg-------~~-~-~-----~-~~~~p-~~i~~~~~~~i~~i~~~~ 123 (278)
..|..++.... ..+.-..||.|+.|-....-.+. .. + . . ....| ..........|..++.
T Consensus 162 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-- 239 (366)
T 3k26_A 162 DEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRW-- 239 (366)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEE--
T ss_pred CceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEE--
Confidence 36777776543 34445678999999754321110 00 0 0 0 00001 1111113456777777
Q ss_pred CCCcEEEEEEcCCcEEEEeCCC
Q psy5940 124 ISQDHSVFLMLSGSVFVCGLNS 145 (278)
Q Consensus 124 ~g~~~~~~lt~~G~v~~~G~n~ 145 (278)
..++.+.-..+|.|..|-...
T Consensus 240 -~~~~l~~~~~d~~i~~wd~~~ 260 (366)
T 3k26_A 240 -LGDLILSKSCENAIVCWKPGK 260 (366)
T ss_dssp -ETTEEEEECSSSEEEEEEESS
T ss_pred -cCCEEEEEecCCEEEEEeCCC
Confidence 667777788899999996543
No 42
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=41.95 E-value=1.3e+02 Score=24.07 Aligned_cols=17 Identities=6% Similarity=0.092 Sum_probs=13.4
Q ss_pred CCeEEEEECCcEEEeeC
Q psy5940 182 RFHSVVYSSREVYTFGI 198 (278)
Q Consensus 182 ~~~~~~l~~~~vy~wG~ 198 (278)
..|+++..+++||.+|-
T Consensus 245 ~~~~~~~~~~~i~v~GG 261 (301)
T 2vpj_A 245 CYVGATVLRGRLYAIAG 261 (301)
T ss_dssp BSCEEEEETTEEEEECC
T ss_pred cceeEEEECCEEEEEcC
Confidence 35677777889999986
No 43
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=40.86 E-value=1.4e+02 Score=23.84 Aligned_cols=113 Identities=10% Similarity=0.058 Sum_probs=56.9
Q ss_pred ceEEEecCCCcEEEEecCCCCcccCCCCCCccCceeeccccCCCEEEEeccCCc-eEEEeCCCCEEEEeCCCCCcCCCCC
Q psy5940 20 KIDVSSNQFNEVYIWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCMDKFH-SVFVSDDGRVWSCGHGQGGRLGLGS 98 (278)
Q Consensus 20 ~~~i~l~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~-~~~lt~~g~v~~~G~n~~gqlg~~~ 98 (278)
...++++.+|++.+.+......+............... ....|..++..... .++...+|.|..|-......
T Consensus 12 v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~----- 84 (337)
T 1gxr_A 12 AYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLN--HGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGN----- 84 (337)
T ss_dssp CCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEEC--CSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTC-----
T ss_pred eeEEEECCCCCEEEeecCCCcEeccccCCccccceecc--CCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCc-----
Confidence 33467889999998887554433322211111111111 22356666654432 33334488888887543221
Q ss_pred CCceeccEEeec-CCCCCEEEEEEccCCCcEEEEEEcCCcEEEEeC
Q psy5940 99 ESSVVSPKKLNF-EKDKDKLGVAMASISQDHSVFLMLSGSVFVCGL 143 (278)
Q Consensus 99 ~~~~~~p~~i~~-~~~~~i~~i~~~~~g~~~~~~lt~~G~v~~~G~ 143 (278)
......+.. .....|..++... .....++-..+|.|+.|-.
T Consensus 85 ---~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~ 126 (337)
T 1gxr_A 85 ---KSPVSQLDCLNRDNYIRSCKLLP-DGCTLIVGGEASTLSIWDL 126 (337)
T ss_dssp ---CSCSEEEECSCTTSBEEEEEECT-TSSEEEEEESSSEEEEEEC
T ss_pred ---eeeeecccccCCCCcEEEEEEcC-CCCEEEEEcCCCcEEEEEC
Confidence 111111221 1244677776611 2334556677889999954
No 44
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=39.86 E-value=1.1e+02 Score=22.50 Aligned_cols=111 Identities=9% Similarity=-0.094 Sum_probs=57.9
Q ss_pred CCCCcceeeccCCceEEEecCCCcEEEEecCCCCcccCCCCCCccCceeeccccCCCEEEEecc-CCceEEEeCCCCEEE
Q psy5940 7 EEMRPIDHLIRDRKIDVSSNQFNEVYIWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCMD-KFHSVFVSDDGRVWS 85 (278)
Q Consensus 7 ~~~~~~~v~~~~~~~~i~l~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g-~~~~~~lt~~g~v~~ 85 (278)
++....++.|......+-+..+|.|-+-....+- ........+. ..++.|.|- ....++++.+|+||+
T Consensus 28 ~~~~~~~LYcr~~g~~LqI~~dG~V~Gt~~~~~~-------~s~lei~sv~----~G~V~L~g~~sg~yL~mn~~G~l~G 96 (142)
T 3p6j_A 28 EGNGEVLLKSTETGQYLRINPDGTVDGTRDRSDT-------HIQFQISPEG----NGEVLLKSTETGQYLRINPDGTVDG 96 (142)
T ss_dssp CSTTCEEEEETTTCCEEEECTTSBEEEECCTTCG-------GGCEEEEEEE----TTEEEEEETTTTEEEEECTTSBEEE
T ss_pred ccCcEEEEEEeCCCEEEEECCCCCEeeecCCCCC-------ceEEEEEEcc----CCEEEEEEecCCEEEeECCCCCEee
Confidence 4445556667652222556677777754321100 0111112221 246777764 467788999999997
Q ss_pred EeCCCCCcCCCCCCCceeccEEeecCCCCCEEEEEEccCCCcEEEEEEcCCcEEEE
Q psy5940 86 CGHGQGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVC 141 (278)
Q Consensus 86 ~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~~~~g~~~~~~lt~~G~v~~~ 141 (278)
--. .++......+...+. -.+.|.....| .-++|+.+|++|+-
T Consensus 97 s~~----------~t~ecsflEi~~en~-y~v~i~g~~sg--~YLamnk~Grlygs 139 (142)
T 3p6j_A 97 TRD----------RSDTHIQFQISPEGN-GEVLLKSTETG--QYLRINPDGTVDGT 139 (142)
T ss_dssp ECC----------TTCGGGCEEEEECST-TCEEEEETTTC--CEEEECTTSBEEEE
T ss_pred ccc----------CCCCceEEEEEeecC-cEEEEEEecCC--EEEEECCCcCCccC
Confidence 422 111223333333222 23344443334 47899999999964
No 45
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=38.63 E-value=1.5e+02 Score=23.73 Aligned_cols=18 Identities=17% Similarity=0.180 Sum_probs=14.1
Q ss_pred CCeEEEEECCcEEEeeCC
Q psy5940 182 RFHSVVYSSREVYTFGIH 199 (278)
Q Consensus 182 ~~~~~~l~~~~vy~wG~n 199 (278)
..|+++..+++||++|-.
T Consensus 198 ~~~~~~~~~~~i~v~GG~ 215 (301)
T 2vpj_A 198 SGAGVALLNDHIYVVGGF 215 (301)
T ss_dssp BSCEEEEETTEEEEECCB
T ss_pred ccceEEEECCEEEEEeCC
Confidence 367777778899999864
No 46
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=38.34 E-value=1.6e+02 Score=24.01 Aligned_cols=166 Identities=10% Similarity=0.017 Sum_probs=89.6
Q ss_pred CCCCcceeec-cCCceEEEecCCCcEEEEecCCCCcccCCCCCCccCceeeccccCCCEEEEec---cCCceEEEeCCCC
Q psy5940 7 EEMRPIDHLI-RDRKIDVSSNQFNEVYIWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCM---DKFHSVFVSDDGR 82 (278)
Q Consensus 7 ~~~~~~~v~~-~~~~~~i~l~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~---g~~~~~~lt~~g~ 82 (278)
++..+..+.. .....-+++|+.|++|.--..+.-... ... + ..++.+|..+-+ .....+++|++|.
T Consensus 22 ~gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~------~~~---l-l~~~e~i~~v~~~~~~~~~~v~~T~~G~ 91 (276)
T 3no0_A 22 EKAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGS------KVS---L-KSREEKIVGAFIREKFGNRLLLATKKGY 91 (276)
T ss_dssp SCCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSE------ECC---C-SSTTCCEEEEEEGGGSCSEEEEEETTSE
T ss_pred CCCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCc------ccc---c-CCCCCEEEEEECCcCCCCEEEEEeCCCE
Confidence 4455555553 333333567999999987432211000 000 3 234568888865 1246788999998
Q ss_pred EEEEeCCCCCcCCCCCCCceeccEEeecCCCCCEEEEEEccCCCcEEEEEEcCCcEEEEeCCCccccCCCCCCCCCCCCe
Q psy5940 83 VWSCGHGQGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCGLNSFHQLGLSPPPSHIVSPT 162 (278)
Q Consensus 83 v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~~~~g~~~~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~p~ 162 (278)
+.-.-..++-+- ..-...+...++..++.+.... +..+.+++|++|++|-+-..+.-..|.......
T Consensus 92 iKr~~l~~~~~~-------~~G~~~i~lkegD~l~~~~~~~-~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~----- 158 (276)
T 3no0_A 92 VKKIPLAEFEYK-------AQGMPIIKLTEGDEVVSIASSV-DETHILLFTKKGRVARFSVREVPPSTPGARGVQ----- 158 (276)
T ss_dssp EEEEEGGGTTTC-------STTEECSCCCTTCCEEEEEECC-SSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEE-----
T ss_pred EEEEEHHHhhhh-------cCCeEEEecCCCCEEEEEEEeC-CCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEE-----
Confidence 887765444210 0011122222355676665521 556799999999999997766665555432211
Q ss_pred eeccCCCCCCCCeEEEEccC--CeEEEEEC-CcEEEeeC
Q psy5940 163 PIPRSSLKSSQPLIGVCCGR--FHSVVYSS-REVYTFGI 198 (278)
Q Consensus 163 ~i~~~~~~~~~~i~~i~~g~--~~~~~l~~-~~vy~wG~ 198 (278)
-+.+ ..+.. |+.+.... ...+++++ |...-.-.
T Consensus 159 ~i~L--~~~d~-vv~~~~~~~~~~ll~~T~~G~~kr~~~ 194 (276)
T 3no0_A 159 GIKL--EKNDE-TSGLRIWNGEPYLLVITAKGRVKKISH 194 (276)
T ss_dssp CCCC--CTTCC-EEEEEEESSCSEEEEEETTSCEEEEEG
T ss_pred EEcc--CCCCE-EEEEEEeCCCCEEEEEeCCCcEEEeEH
Confidence 1221 22344 77765443 34555554 45554443
No 47
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=37.41 E-value=2e+02 Score=24.76 Aligned_cols=137 Identities=10% Similarity=0.085 Sum_probs=74.3
Q ss_pred CCCcceeeccC-CceEEEecCCCcEEEEecCCCCcccCCCCCCccCceeeccccCCCEEEEecc-----CCceEEEeCCC
Q psy5940 8 EMRPIDHLIRD-RKIDVSSNQFNEVYIWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCMD-----KFHSVFVSDDG 81 (278)
Q Consensus 8 ~~~~~~v~~~~-~~~~i~l~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g-----~~~~~~lt~~g 81 (278)
+..+..+.... ...-+++|+.|++|.+-..+--..|.... .......++..++.+|+.+..- ..+.+++|++|
T Consensus 45 ~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a~-G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G 123 (370)
T 3l6v_A 45 EDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNAR-GRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNG 123 (370)
T ss_dssp CCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTSC-CEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTS
T ss_pred CCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCcccC-CcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCC
Confidence 44444444333 22225579999999997654333222111 1111111222345678887654 23678889999
Q ss_pred CEEEEeCCCCCcCCCCCCCceeccEEeecCCCCCEEEEEEccCCCcEEEEEEcCCcEEEEeCCCccccCCC
Q psy5940 82 RVWSCGHGQGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCGLNSFHQLGLS 152 (278)
Q Consensus 82 ~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~~~~g~~~~~~lt~~G~v~~~G~n~~gqlg~~ 152 (278)
.+.-.-...+-... ..-. ..+...++..++.+... -+....+++|++|++.-+-..+.-.+|+.
T Consensus 124 ~vKrt~l~e~~~~~---~~G~---~ai~L~~~d~lv~v~~~-~~~~~i~l~T~~G~~irf~~~~v~~~gR~ 187 (370)
T 3l6v_A 124 TVKKTPLSEFAFRL---ARGK---IAINLDEGDALVGVALT-DGDRDVLLFASNGKTVRFGESTVRSMGRT 187 (370)
T ss_dssp EEEEEEGGGGCSCC---TTCE---ESSCCCTTCCEEEEEEE-CSCCEEEEEETTSEEEEEEGGGSCBCCTT
T ss_pred eEEEeEHHHhhccc---CCce---EEEEeCCCCEEEEEEEe-CCCceEEEEeCCCeEEEEEccccCccCCC
Confidence 88877654443211 0000 11111124456555431 26778999999999998876665555544
No 48
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=36.66 E-value=2e+02 Score=24.48 Aligned_cols=67 Identities=10% Similarity=-0.009 Sum_probs=45.6
Q ss_pred CEEEEeccCCceEEEeCCCCEEEEeCCCCCcCCCCCCCceeccEEeecCCCCCEEEEEEccCCCcEEEEEEcCCcEEEEe
Q psy5940 63 SIKQVCMDKFHSVFVSDDGRVWSCGHGQGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCG 142 (278)
Q Consensus 63 ~i~~v~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~~~~g~~~~~~lt~~G~v~~~G 142 (278)
.|..++......+.-..||.|+.|-....- . ...+. .....|..++. .....+.-..+|.|+.|-
T Consensus 161 ~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~----------~-~~~~~-~h~~~v~~~~~---~~~~l~s~s~dg~i~~wd 225 (445)
T 2ovr_B 161 GVWSSQMRDNIIISGSTDRTLKVWNAETGE----------C-IHTLY-GHTSTVRCMHL---HEKRVVSGSRDATLRVWD 225 (445)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEETTTTE----------E-EEEEC-CCSSCEEEEEE---ETTEEEEEETTSEEEEEE
T ss_pred CEEEEEecCCEEEEEeCCCeEEEEECCcCc----------E-EEEEC-CCCCcEEEEEe---cCCEEEEEeCCCEEEEEE
Confidence 577777766666777889999999753210 0 11121 22457778877 788888889999999995
Q ss_pred CC
Q psy5940 143 LN 144 (278)
Q Consensus 143 ~n 144 (278)
..
T Consensus 226 ~~ 227 (445)
T 2ovr_B 226 IE 227 (445)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 49
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=35.66 E-value=1.7e+02 Score=23.48 Aligned_cols=22 Identities=18% Similarity=-0.068 Sum_probs=13.4
Q ss_pred eEEEEecCCcC-eEeecCCCCccC
Q psy5940 242 HSFTAETSLGP-EFGGGWTGKKGK 264 (278)
Q Consensus 242 hs~~~lt~~g~-v~~wG~ng~~~~ 264 (278)
+.+ .++.+|+ +|.+......|+
T Consensus 245 ~~~-~~~~~g~~~W~~~~~~~~~~ 267 (276)
T 3no2_A 245 QLV-EIDSEGKVVWQLNDKVKFGM 267 (276)
T ss_dssp SEE-EECTTSBEEEEECCTTTSCC
T ss_pred eEE-EECCCCCEEEEecCcccccc
Confidence 344 7888886 566665555443
No 50
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=34.76 E-value=1.2e+02 Score=25.42 Aligned_cols=165 Identities=12% Similarity=0.047 Sum_probs=82.7
Q ss_pred ceEEEecCCCcEEEEecCCCCcccCCCCCCccCceeeccccCCCEEE--EeccCCceEEEeCCCCEEEEeCCCCCcCCCC
Q psy5940 20 KIDVSSNQFNEVYIWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQ--VCMDKFHSVFVSDDGRVWSCGHGQGGRLGLG 97 (278)
Q Consensus 20 ~~~i~l~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~--v~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~ 97 (278)
...+++|.+|-+-..-...+.....+.. -...+..-.+..+.. ++....+.+++|+.|++|..-.......+..
T Consensus 9 ~~~v~~T~~G~iKr~~~~~~~~~~~~~~----g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 9 NIVVMLTKKGFLKRLSQNEYKLQGTGGK----GLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp EEEEEEETTCBEEEEEGGGSCBCCSSCC----CEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CEEEEEeCCCEEEEeEHHHhhccccCCC----CceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 3347789999888765443322111100 011111122334444 4456677899999999998876543332221
Q ss_pred CCCceeccEEeecCCCCCEEEEEEccC--CCcEEEEEEcCCcEEEEeCCCccccCCCCCCCCCCCCeeeccCCCCCCCCe
Q psy5940 98 SESSVVSPKKLNFEKDKDKLGVAMASI--SQDHSVFLMLSGSVFVCGLNSFHQLGLSPPPSHIVSPTPIPRSSLKSSQPL 175 (278)
Q Consensus 98 ~~~~~~~p~~i~~~~~~~i~~i~~~~~--g~~~~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~~~~i 175 (278)
.... .....+....++.|+.+..+.- ...+.+++|++|.++-.-..+|-.. .. . .. .-+.+ ..+.. +
T Consensus 85 ~~G~-~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~-r~-~----G~-~~i~L--~~~d~-l 153 (312)
T 1suu_A 85 SKGQ-NISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAV-KS-R----GV-IVIKL--NDKDF-V 153 (312)
T ss_dssp ---C-BGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----------CE-ECBCC--CTTCC-E
T ss_pred CCCc-ChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhcc-CC-C----cE-EEEec--CCCCE-E
Confidence 1110 0111233334678887766210 2457899999999999876655211 10 0 00 01111 12333 6
Q ss_pred EEEEc--cCCeEEEEEC-CcEEEeeCC
Q psy5940 176 IGVCC--GRFHSVVYSS-REVYTFGIH 199 (278)
Q Consensus 176 ~~i~~--g~~~~~~l~~-~~vy~wG~n 199 (278)
+.+.. +..+.+++++ |.++.+-.+
T Consensus 154 v~~~~~~~~~~i~l~T~~G~~~r~~~~ 180 (312)
T 1suu_A 154 TSAEIVFKDEKVICLSKKGSAFIFNSR 180 (312)
T ss_dssp EEEEEECTTCEEEEEETTSEEEEEEGG
T ss_pred EEEEEeCCCCEEEEEeCCCcEEEEEHH
Confidence 55543 3455666675 577766553
No 51
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=31.65 E-value=1.8e+02 Score=22.47 Aligned_cols=16 Identities=19% Similarity=0.299 Sum_probs=10.3
Q ss_pred EEEEEEcCCcEEEEeC
Q psy5940 128 HSVFLMLSGSVFVCGL 143 (278)
Q Consensus 128 ~~~~lt~~G~v~~~G~ 143 (278)
..++++.+|++|+...
T Consensus 195 ~~i~~d~~g~l~v~~~ 210 (270)
T 1rwi_B 195 WGIAVDEAGTVYVTEH 210 (270)
T ss_dssp EEEEECTTCCEEEEET
T ss_pred eEEEECCCCCEEEEEC
Confidence 4566667777777653
No 52
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=31.51 E-value=2.2e+02 Score=23.43 Aligned_cols=79 Identities=15% Similarity=0.042 Sum_probs=39.2
Q ss_pred CCEEEEecc------CCc-eEEEeCCCCEEEEeCCCCCcCCCCCCCceeccE-Eee------cCCCCCEEEEEEccCCCc
Q psy5940 62 ASIKQVCMD------KFH-SVFVSDDGRVWSCGHGQGGRLGLGSESSVVSPK-KLN------FEKDKDKLGVAMASISQD 127 (278)
Q Consensus 62 ~~i~~v~~g------~~~-~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~-~i~------~~~~~~i~~i~~~~~g~~ 127 (278)
..|..++.. ... .+.-..+|.|+.|-......-+.. ......|. .+. ......|..++. ..+
T Consensus 122 ~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~ 197 (397)
T 1sq9_A 122 HSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS-LTLNWSPTLELQGTVESPMTPSQFATSVDI---SER 197 (397)
T ss_dssp SCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH-TTTCCCCEEEEEEEECCSSSSCCCCCEEEE---CTT
T ss_pred CcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccc-ceeeccCcceeeeeeccccCCCCCceEEEE---CCC
Confidence 467777665 333 444568899999965431000000 00011121 221 122445666666 433
Q ss_pred -EEEEEEcCCcEEEEeCC
Q psy5940 128 -HSVFLMLSGSVFVCGLN 144 (278)
Q Consensus 128 -~~~~lt~~G~v~~~G~n 144 (278)
..+.-..+|.|+.|-..
T Consensus 198 ~~l~~~~~dg~i~i~d~~ 215 (397)
T 1sq9_A 198 GLIATGFNNGTVQISELS 215 (397)
T ss_dssp SEEEEECTTSEEEEEETT
T ss_pred ceEEEEeCCCcEEEEECC
Confidence 45555677889998653
No 53
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=30.94 E-value=3.3e+02 Score=25.39 Aligned_cols=20 Identities=5% Similarity=0.140 Sum_probs=15.6
Q ss_pred CCcEEEEEEcCCcEEEEeCC
Q psy5940 125 SQDHSVFLMLSGSVFVCGLN 144 (278)
Q Consensus 125 g~~~~~~lt~~G~v~~~G~n 144 (278)
-..|++++..+++||++|-.
T Consensus 597 R~~~~~~~~~~~~iyv~GG~ 616 (695)
T 2zwa_A 597 RYGSQIKYITPRKLLIVGGT 616 (695)
T ss_dssp CBSCEEEEEETTEEEEECCB
T ss_pred cccceEEEeCCCEEEEECCc
Confidence 45678787777999999863
No 54
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=30.82 E-value=2.1e+02 Score=22.99 Aligned_cols=72 Identities=14% Similarity=0.046 Sum_probs=42.8
Q ss_pred CCEEEEeccCC----c-eEEEeCCCCEEEEeCCCCCcCCCCCCCceeccEEeecCCCCCEEEEEEccCCCcEEEEEEcCC
Q psy5940 62 ASIKQVCMDKF----H-SVFVSDDGRVWSCGHGQGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSG 136 (278)
Q Consensus 62 ~~i~~v~~g~~----~-~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~~~~g~~~~~~lt~~G 136 (278)
..|..++.... . .+.-..||.|..|-....++ .....+.. ....|..++.- -...+.+.-..+|
T Consensus 40 ~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~---------~~~~~~~~-h~~~v~~~~~~-~~~~~l~s~~~dg 108 (368)
T 3mmy_A 40 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ---------TIPKAQQM-HTGPVLDVCWS-DDGSKVFTASCDK 108 (368)
T ss_dssp SCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC---------EEEEEEEE-CSSCEEEEEEC-TTSSEEEEEETTS
T ss_pred CceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc---------eeEEEecc-ccCCEEEEEEC-cCCCEEEEEcCCC
Confidence 47888888776 2 33345789999997643221 11122221 24477777661 1233566677889
Q ss_pred cEEEEeCC
Q psy5940 137 SVFVCGLN 144 (278)
Q Consensus 137 ~v~~~G~n 144 (278)
.|..|-..
T Consensus 109 ~v~iwd~~ 116 (368)
T 3mmy_A 109 TAKMWDLS 116 (368)
T ss_dssp EEEEEETT
T ss_pred cEEEEEcC
Confidence 99999554
No 55
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=29.36 E-value=2.6e+02 Score=23.70 Aligned_cols=79 Identities=10% Similarity=-0.068 Sum_probs=43.6
Q ss_pred CEEEEecc----CCceEEEeCCCCEEEEeCCCCCcCCCCCC---Cc------eecc--EEeecCCCCCEEEEEEccCCCc
Q psy5940 63 SIKQVCMD----KFHSVFVSDDGRVWSCGHGQGGRLGLGSE---SS------VVSP--KKLNFEKDKDKLGVAMASISQD 127 (278)
Q Consensus 63 ~i~~v~~g----~~~~~~lt~~g~v~~~G~n~~gqlg~~~~---~~------~~~p--~~i~~~~~~~i~~i~~~~~g~~ 127 (278)
.|..++.. ....+.-..||.|..|-............ .. ...| ..........+..+.. ...
T Consensus 205 ~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~ 281 (464)
T 3v7d_B 205 TVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG---HGN 281 (464)
T ss_dssp CEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEE---ETT
T ss_pred ccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcC---CCC
Confidence 56555543 23455567889999997654322211000 00 0011 1111122456777777 778
Q ss_pred EEEEEEcCCcEEEEeCC
Q psy5940 128 HSVFLMLSGSVFVCGLN 144 (278)
Q Consensus 128 ~~~~lt~~G~v~~~G~n 144 (278)
+.+.-..+|.|..|-..
T Consensus 282 ~l~~~~~d~~i~vwd~~ 298 (464)
T 3v7d_B 282 IVVSGSYDNTLIVWDVA 298 (464)
T ss_dssp EEEEEETTSCEEEEETT
T ss_pred EEEEEeCCCeEEEEECC
Confidence 88888899999999653
No 56
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=29.17 E-value=2.5e+02 Score=23.43 Aligned_cols=96 Identities=10% Similarity=0.064 Sum_probs=57.2
Q ss_pred EEecCCCcEEEEecCCCCcccCCCCCCccCceeeccccCCCEEEEeccCC--ceEEEeCCCCEEEEeCCCCCcCCCCCCC
Q psy5940 23 VSSNQFNEVYIWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCMDKF--HSVFVSDDGRVWSCGHGQGGRLGLGSES 100 (278)
Q Consensus 23 i~l~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g~~--~~~~lt~~g~v~~~G~n~~gqlg~~~~~ 100 (278)
++...+|.|+.|-... +++ ...+.......|..++.... ..++-..+|.|..|-.....
T Consensus 107 ~~~~~d~~v~lw~~~~-~~~----------~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~-------- 167 (401)
T 4aez_A 107 VAVALERNVYVWNADS-GSV----------SALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT-------- 167 (401)
T ss_dssp EEEEETTEEEEEETTT-CCE----------EEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCC--------
T ss_pred EEEECCCeEEEeeCCC-CcE----------eEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCe--------
Confidence 4567889999996532 111 11122112335666665443 44445678999999653221
Q ss_pred ceeccEEeecCCCCCEEEEEEccCCCcEEEEEEcCCcEEEEeCC
Q psy5940 101 SVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCGLN 144 (278)
Q Consensus 101 ~~~~p~~i~~~~~~~i~~i~~~~~g~~~~~~lt~~G~v~~~G~n 144 (278)
....+. .....|..++. ..+..+.-..+|.|+.|-..
T Consensus 168 ---~~~~~~-~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~ 204 (401)
T 4aez_A 168 ---KLRTMA-GHQARVGCLSW---NRHVLSSGSRSGAIHHHDVR 204 (401)
T ss_dssp ---EEEEEC-CCSSCEEEEEE---ETTEEEEEETTSEEEEEETT
T ss_pred ---EEEEec-CCCCceEEEEE---CCCEEEEEcCCCCEEEEecc
Confidence 011121 23457888887 77888888999999999654
No 57
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=28.50 E-value=2.1e+02 Score=22.36 Aligned_cols=14 Identities=43% Similarity=0.498 Sum_probs=8.8
Q ss_pred EEEEEEcCCcEEEE
Q psy5940 128 HSVFLMLSGSVFVC 141 (278)
Q Consensus 128 ~~~~lt~~G~v~~~ 141 (278)
+.++++.+|++|+.
T Consensus 254 ~~i~~~~~g~l~vs 267 (286)
T 1q7f_A 254 FDVALMDDGSVVLA 267 (286)
T ss_dssp EEEEEETTTEEEEE
T ss_pred eeEEECCCCcEEEE
Confidence 35666666666665
No 58
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=26.81 E-value=2.6e+02 Score=22.84 Aligned_cols=115 Identities=9% Similarity=0.039 Sum_probs=54.5
Q ss_pred ceEEEeCCCCEEEEeCCCCCcCCCCCCCceeccEEeecCCCCCEEEEEEccCCCcEEEEEEcCCcEEEEeCCCccccCCC
Q psy5940 73 HSVFVSDDGRVWSCGHGQGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCGLNSFHQLGLS 152 (278)
Q Consensus 73 ~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~~~~g~~~~~~lt~~G~v~~~G~n~~gqlg~~ 152 (278)
..++-..+|.|+.|-...... ...+. .....|..++...-+....+.-..+|.|+.|-.......-..
T Consensus 158 ~~~~~~~~~~v~~~d~~~~~~-----------~~~~~-~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~ 225 (408)
T 4a11_B 158 LVAVGTRGPKVQLCDLKSGSC-----------SHILQ-GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLIT 225 (408)
T ss_dssp EEEEEESSSSEEEEESSSSCC-----------CEEEC-CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEE
T ss_pred EEEEEcCCCeEEEEeCCCcce-----------eeeec-CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccc
Confidence 445556789999997542211 11122 123467777761112223556778899999965432211100
Q ss_pred CCC-CCCCCCeeeccCCCCCCCCeEEEEccCCe--EEEEEC-CcEEEeeCCC
Q psy5940 153 PPP-SHIVSPTPIPRSSLKSSQPLIGVCCGRFH--SVVYSS-REVYTFGIHA 200 (278)
Q Consensus 153 ~~~-~~~~~p~~i~~~~~~~~~~i~~i~~g~~~--~~~l~~-~~vy~wG~n~ 200 (278)
-.. .................. |..++...+. .++... +.++.|-...
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 276 (408)
T 4a11_B 226 LDQHNGKKSQAVESANTAHNGK-VNGLCFTSDGLHLLTVGTDNRMRLWNSSN 276 (408)
T ss_dssp CCTTTTCSCCCTTTSSCSCSSC-EEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred ccccccccceeeccccccccCc-eeEEEEcCCCCEEEEecCCCeEEEEECCC
Confidence 000 000000000000112223 7777776543 333333 5999997753
No 59
>3q7x_A De novo designed beta-trefoil architecture with S primary structure; beta-terfoil, de novo protein; 1.40A {Synthetic} PDB: 3q7w_A 3o4d_A 3q7y_A 3o4b_A 3o4c_A 3o4a_A* 3o49_A
Probab=25.04 E-value=1.9e+02 Score=20.74 Aligned_cols=59 Identities=14% Similarity=0.021 Sum_probs=31.4
Q ss_pred cCCceEEEeCCCCEEEEeCCCCCcCCCCCCCceeccEEeecCCCCCEEEEEEccCCCcEEEEEEcCCcEEEE
Q psy5940 70 DKFHSVFVSDDGRVWSCGHGQGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVC 141 (278)
Q Consensus 70 g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~~~~g~~~~~~lt~~G~v~~~ 141 (278)
-....+++..+|+||+--.- ++......+... +...+.+.....|. -++++.+|++|+-
T Consensus 56 ~sg~yL~m~~~G~v~Gs~~~----------s~ec~flE~~~~-~~g~v~ikg~~sg~--YLamnk~G~lygs 114 (132)
T 3q7x_A 56 ETGQFLRINPDGTVDGTRDR----------SDPGIQFQISPE-GNGEVLLRSTETGQ--FLRINPDGTVDGT 114 (132)
T ss_dssp TTCCEEEECTTSBEEEECC-----------CCGGGCEEEEEE-ETTEEEEEETTTCC--EEEECTTSBEEEE
T ss_pred cccEEEEECCCCCEeeccCC----------CCCceeEEEEee-cCcEEEEEeccCCe--EEEECCCCcCcCC
Confidence 34556788899999975321 111111111111 11334444322244 7899999999974
No 60
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=24.79 E-value=2.3e+02 Score=23.80 Aligned_cols=28 Identities=14% Similarity=0.100 Sum_probs=17.2
Q ss_pred CEEEEEEccCCC-cEEEEEEcCCcEEEEeCCC
Q psy5940 115 DKLGVAMASISQ-DHSVFLMLSGSVFVCGLNS 145 (278)
Q Consensus 115 ~i~~i~~~~~g~-~~~~~lt~~G~v~~~G~n~ 145 (278)
.|..++. .. .+.+.-..+|.|+.|-...
T Consensus 331 ~v~~l~~---~~~~~l~s~~~d~~i~~wd~~~ 359 (437)
T 3gre_A 331 ALSTISV---SNDKILLTDEATSSIVMFSLNE 359 (437)
T ss_dssp GGCCEEE---ETTEEEEEEGGGTEEEEEETTC
T ss_pred ceEEEEE---CCceEEEecCCCCeEEEEECCC
Confidence 3445554 33 3455556689999996544
No 61
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=24.26 E-value=3e+02 Score=22.60 Aligned_cols=194 Identities=12% Similarity=0.066 Sum_probs=88.8
Q ss_pred EEecCCCcEEEEecCCCCcccCCCCCCccCceeeccccCCCEEEEeccC--CceEEEeCCCCEEEEeCCCCCcCCCCCCC
Q psy5940 23 VSSNQFNEVYIWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCMDK--FHSVFVSDDGRVWSCGHGQGGRLGLGSES 100 (278)
Q Consensus 23 i~l~~~g~v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g~--~~~~~lt~~g~v~~~G~n~~gqlg~~~~~ 100 (278)
++...+|.|+.|-..... ....+. .....|..++... ...+.-..+|.|+.|-.....
T Consensus 221 ~~~~~~g~i~~~d~~~~~-----------~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-------- 280 (425)
T 1r5m_A 221 VIPGPKGAIFVYQITEKT-----------PTGKLI-GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGN-------- 280 (425)
T ss_dssp EEECGGGCEEEEETTCSS-----------CSEEEC-CCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBS--------
T ss_pred EEEcCCCeEEEEEcCCCc-----------eeeeec-cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCc--------
Confidence 455777888888543211 111111 1123565555443 344455678889998643211
Q ss_pred ceeccEEeecCCCCCEEEEEEccCCCc-EEEEEEcCCcEEEEeCCCccccCCCCCCCCCCCCeeeccCCCCCCCCeEEEE
Q psy5940 101 SVVSPKKLNFEKDKDKLGVAMASISQD-HSVFLMLSGSVFVCGLNSFHQLGLSPPPSHIVSPTPIPRSSLKSSQPLIGVC 179 (278)
Q Consensus 101 ~~~~p~~i~~~~~~~i~~i~~~~~g~~-~~~~lt~~G~v~~~G~n~~gqlg~~~~~~~~~~p~~i~~~~~~~~~~i~~i~ 179 (278)
....+. .....|..++. ..+ ..+....+|.|+.|-......+ ..+. ..... |..++
T Consensus 281 ---~~~~~~-~~~~~i~~~~~---~~~~~l~~~~~d~~i~i~d~~~~~~~------------~~~~---~~~~~-i~~~~ 337 (425)
T 1r5m_A 281 ---SQNCFY-GHSQSIVSASW---VGDDKVISCSMDGSVRLWSLKQNTLL------------ALSI---VDGVP-IFAGR 337 (425)
T ss_dssp ---CSEEEC-CCSSCEEEEEE---ETTTEEEEEETTSEEEEEETTTTEEE------------EEEE---CTTCC-EEEEE
T ss_pred ---cceEec-CCCccEEEEEE---CCCCEEEEEeCCCcEEEEECCCCcEe------------Eecc---cCCcc-EEEEE
Confidence 011121 12346766766 332 6667778899999955321111 1111 11223 77776
Q ss_pred ccCCe--EEEEEC-CcEEEeeCCCccc-CCCCCC--CCCCceeeceEeeecccCCCCcceEEEeccCce-EEEEecCCcC
Q psy5940 180 CGRFH--SVVYSS-REVYTFGIHAGQL-GHSPVT--VSSASVIEPKVQATIIREDLPGFIFESNRGTKH-SFTAETSLGP 252 (278)
Q Consensus 180 ~g~~~--~~~l~~-~~vy~wG~n~gql-G~~~~~--~~~~~~~~P~~i~~~~~~~~~~~i~~i~~G~~h-s~~~lt~~g~ 252 (278)
...+. .++-.. +.|+.|-...+.. ...... ........+..+..+........|..++-..+. .+++-+.+|.
T Consensus 338 ~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 417 (425)
T 1r5m_A 338 ISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQE 417 (425)
T ss_dssp ECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSC
T ss_pred EcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCce
Confidence 65433 222233 5899997643220 000000 000011112233333332110036666654332 3435667888
Q ss_pred eEeecCC
Q psy5940 253 EFGGGWT 259 (278)
Q Consensus 253 v~~wG~n 259 (278)
|+.|--.
T Consensus 418 i~iw~~~ 424 (425)
T 1r5m_A 418 GSVVAIP 424 (425)
T ss_dssp CEEEECC
T ss_pred EEEEeec
Confidence 8777543
No 62
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=23.14 E-value=3.4e+02 Score=22.90 Aligned_cols=108 Identities=12% Similarity=0.073 Sum_probs=62.5
Q ss_pred CEEEEeccCCceEEEeCCCCEEEEeCCCCCcCCCCCCCceeccEEeecCCCCCEEEEEEccCCCcEEEEEEcCCcEEEEe
Q psy5940 63 SIKQVCMDKFHSVFVSDDGRVWSCGHGQGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCG 142 (278)
Q Consensus 63 ~i~~v~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~~~~g~~~~~~lt~~G~v~~~G 142 (278)
.|..++....+.+.-..||.|..|-...... ...+. .....+..++. ..++.+.-..+|.|..|-
T Consensus 281 ~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-----------~~~~~-~~~~~v~~~~~---~~~~l~~~~~dg~i~vwd 345 (445)
T 2ovr_B 281 RVYSLQFDGIHVVSGSLDTSIRVWDVETGNC-----------IHTLT-GHQSLTSGMEL---KDNILVSGNADSTVKIWD 345 (445)
T ss_dssp CEEEEEECSSEEEEEETTSCEEEEETTTCCE-----------EEEEC-CCCSCEEEEEE---ETTEEEEEETTSCEEEEE
T ss_pred ceEEEEECCCEEEEEeCCCeEEEEECCCCCE-----------EEEEc-CCcccEEEEEE---eCCEEEEEeCCCeEEEEE
Confidence 5777777666666667788888886532110 01111 12346667777 777888888899999995
Q ss_pred CCCccccCCCCCCCCCCCCeeeccCCCCCCCCeEEEEccCCeEEEEEC-CcEEEeeC
Q psy5940 143 LNSFHQLGLSPPPSHIVSPTPIPRSSLKSSQPLIGVCCGRFHSVVYSS-REVYTFGI 198 (278)
Q Consensus 143 ~n~~gqlg~~~~~~~~~~p~~i~~~~~~~~~~i~~i~~g~~~~~~l~~-~~vy~wG~ 198 (278)
...... ...+......... |..++....+.++-.+ +.|..|-.
T Consensus 346 ~~~~~~------------~~~~~~~~~~~~~-v~~~~~~~~~l~s~~~dg~v~iwd~ 389 (445)
T 2ovr_B 346 IKTGQC------------LQTLQGPNKHQSA-VTCLQFNKNFVITSSDDGTVKLWDL 389 (445)
T ss_dssp TTTCCE------------EEEECSTTSCSSC-EEEEEECSSEEEEEETTSEEEEEET
T ss_pred CCCCcE------------EEEEccCCCCCCC-EEEEEECCCEEEEEeCCCeEEEEEC
Confidence 432111 1111111112223 7777776655555554 58999965
No 63
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=22.43 E-value=3.2e+02 Score=22.36 Aligned_cols=69 Identities=19% Similarity=0.109 Sum_probs=40.9
Q ss_pred CCEEEEeccCC-ceEEEeCCCCEEEEeCCCCCcCCCCCCCceeccEEeecCCCCCEEEEEEccCC--CcEEEEEEcCCcE
Q psy5940 62 ASIKQVCMDKF-HSVFVSDDGRVWSCGHGQGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASIS--QDHSVFLMLSGSV 138 (278)
Q Consensus 62 ~~i~~v~~g~~-~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~~~~g--~~~~~~lt~~G~v 138 (278)
..|..++.... ..+....+|.|+.|-.... .+..........|..++. . ..+.++-..+|.|
T Consensus 290 ~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~------------~~~~~~~~~~~~i~~~~~---s~~~~~l~~~~~dg~i 354 (425)
T 1r5m_A 290 QSIVSASWVGDDKVISCSMDGSVRLWSLKQN------------TLLALSIVDGVPIFAGRI---SQDGQKYAVAFMDGQV 354 (425)
T ss_dssp SCEEEEEEETTTEEEEEETTSEEEEEETTTT------------EEEEEEECTTCCEEEEEE---CTTSSEEEEEETTSCE
T ss_pred ccEEEEEECCCCEEEEEeCCCcEEEEECCCC------------cEeEecccCCccEEEEEE---cCCCCEEEEEECCCeE
Confidence 35667766544 4455567889999875321 111111122446777766 4 3466667788999
Q ss_pred EEEeCCC
Q psy5940 139 FVCGLNS 145 (278)
Q Consensus 139 ~~~G~n~ 145 (278)
+.|-...
T Consensus 355 ~i~~~~~ 361 (425)
T 1r5m_A 355 NVYDLKK 361 (425)
T ss_dssp EEEECHH
T ss_pred EEEECCC
Confidence 9996543
No 64
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=20.83 E-value=4.1e+02 Score=22.92 Aligned_cols=109 Identities=10% Similarity=0.109 Sum_probs=51.1
Q ss_pred EEEecCCCc-EEEEecCCCCcccCCCCCCccCceeeccccCCCEEEEeccCCceEEEeCCCCEEEEeCCCCCcCCCCCCC
Q psy5940 22 DVSSNQFNE-VYIWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCMDKFHSVFVSDDGRVWSCGHGQGGRLGLGSES 100 (278)
Q Consensus 22 ~i~l~~~g~-v~~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~ 100 (278)
.++++.+|+ +|+......+.+..=+......-..|+. ++. ..-...|....+.++.||++........+..-
T Consensus 141 ~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v-~g~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~----- 213 (386)
T 3sjl_D 141 MTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV-PDC-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPE----- 213 (386)
T ss_dssp GEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC-CSE-EEEEEEETTEEEEEETTSCEEEEECCSSSCCE-----
T ss_pred eEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC-CCc-ceeecCCCceeEEECCCCCEEEEECCCCCeEE-----
Confidence 367788885 7776443334333322222122122211 110 11123355556688899998888765444431
Q ss_pred ceeccEEeecCCCCCEE---EEEEccCCCcEEEEEEcCCcEEEEe
Q psy5940 101 SVVSPKKLNFEKDKDKL---GVAMASISQDHSVFLMLSGSVFVCG 142 (278)
Q Consensus 101 ~~~~p~~i~~~~~~~i~---~i~~~~~g~~~~~~lt~~G~v~~~G 142 (278)
......+ .....++. .... ...+.++++.+|+||+.-
T Consensus 214 -~~~~~~~-~~~~~~~~~~~~~~~---~dG~~~~vs~~g~V~v~d 253 (386)
T 3sjl_D 214 -ITHTEVF-HPEDEFLINHPAYSQ---KAGRLVWPTYTGKIHQID 253 (386)
T ss_dssp -EEECCCC-SCTTSCBCSCCEEET---TTTEEEEEBTTSEEEEEE
T ss_pred -Eeeccee-ccccccccccceeEc---CCCcEEEEeCCCEEEEEE
Confidence 0000001 01111111 1112 344667888999999984
No 65
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=20.72 E-value=3.3e+02 Score=21.76 Aligned_cols=14 Identities=14% Similarity=-0.073 Sum_probs=8.9
Q ss_pred EecCCcC-eEeecCC
Q psy5940 246 AETSLGP-EFGGGWT 259 (278)
Q Consensus 246 ~lt~~g~-v~~wG~n 259 (278)
+++.+|+ +|.-+..
T Consensus 320 ~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 320 ALSADGKTLYVSVKQ 334 (353)
T ss_dssp EECTTSCEEEEEEEC
T ss_pred EEcCCCCEEEEEEcc
Confidence 6677776 6665554
No 66
>3snv_A Symfoil-4T/permutation #1 synthetic protein; beta-trefoil, de novo protein; 2.20A {Homo sapiens}
Probab=20.04 E-value=2.6e+02 Score=20.37 Aligned_cols=64 Identities=11% Similarity=-0.005 Sum_probs=35.1
Q ss_pred EEEEe-ccCCceEEEeCCCCEEEEeCCCCCcCCCCCCCceeccEEeecCCCCCEEEEEEccCCCcEEEEEEcCCcEEE
Q psy5940 64 IKQVC-MDKFHSVFVSDDGRVWSCGHGQGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFV 140 (278)
Q Consensus 64 i~~v~-~g~~~~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~~~~g~~~~~~lt~~G~v~~ 140 (278)
++.|. +.....++++.+|+||+--.- ++......+...+ .-.+.+..+..| .-++|+.+|++|+
T Consensus 52 ~V~I~gv~sg~yL~m~~~G~v~Gs~~~----------~~ec~flE~~~e~-~g~v~i~~~~sg--~Ylamnk~Grl~G 116 (143)
T 3snv_A 52 EVLLKSTETGQYLRINPDGTVDGTRDR----------SDTHIQFQISPEG-NGEVLLKSTETG--QYLRINPDGTVDG 116 (143)
T ss_dssp EEEEEETTTTEEEEECTTSBEEEECCT----------TCTTSEEEEEECS-TTEEEEEETTTC--CEEEECTTSBEEE
T ss_pred eEEEEEEcccEEEeECCCCCEeecccC----------CCcceEEEEEecC-CcEEEEEEeeCC--EEEEEcCCCcCcC
Confidence 44444 455677889999999975321 0111222222221 233444442223 6789999999964
Done!