RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5940
(278 letters)
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural
genomics consortium, SGC, coiled coil, metal-binding,
phosphoprotein; 1.80A {Homo sapiens}
Length = 389
Score = 131 bits (332), Expect = 5e-36
Identities = 53/192 (27%), Positives = 80/192 (41%), Gaps = 14/192 (7%)
Query: 30 EVYIWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCMDKFHSVFVSDDGRVWSCGHG 89
+Y WG N LG VP ++L Q+ + V+ DG++++ G+G
Sbjct: 21 TIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYG 80
Query: 90 QGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCGLNSFHQL 149
GGRLG+G SV +P L + VA+ S H + L G V+ G +L
Sbjct: 81 AGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNS-GGKHCLALSSEGEVYSWGEAEDGKL 139
Query: 150 GLSPPPSHIVSPTPIPRSSLKSSQPLIGVCCGRFHS-VVYSSREVYTFGI-HAGQLGH-- 205
G P I SL ++ V G HS V ++ ++YT+G G+LGH
Sbjct: 140 GHGNRSPC-DRPRVI--ESL-RGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSD 195
Query: 206 -----SPVTVSS 212
P V +
Sbjct: 196 SEDQLKPKLVEA 207
Score = 125 bits (317), Expect = 6e-34
Identities = 49/192 (25%), Positives = 80/192 (41%), Gaps = 14/192 (7%)
Query: 30 EVYIWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCMDKFHSVFVSDDGRVWSCGHG 89
EVY WG + LG G++ D P +++SL+ + V HS V+ G +++ G G
Sbjct: 127 EVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKG 186
Query: 90 QGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCGLNSFHQL 149
+ GRLG + PK + + + +A S ++ L +V+ G + +L
Sbjct: 187 RYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGS-GDAQTLCLTDDDTVWSWGDGDYGKL 245
Query: 150 GLSPPPSHIVSPTPIPRSSLKSSQPLIGVCCGRFHSVVYSSR-EVYTFGI-HAGQLGH-- 205
G P+ SL + ++ V CG SV + VYT+G +LGH
Sbjct: 246 GRGGSDGC---KVPMKIDSL-TGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGS 301
Query: 206 -----SPVTVSS 212
P V
Sbjct: 302 DDHVRRPRQVQG 313
Score = 115 bits (291), Expect = 4e-30
Identities = 44/161 (27%), Positives = 70/161 (43%), Gaps = 7/161 (4%)
Query: 30 EVYIWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCMDKFHSVFVSDDGRVWSCGHG 89
V+ WG LG G VP +DSL + +V SV ++ G V++ G G
Sbjct: 233 TVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKG 292
Query: 90 QGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCGLNSFHQL 149
RLG GS+ V P+++ + K V + H V G V+ G N QL
Sbjct: 293 DYHRLGHGSDDHVRRPRQVQGLQGKK---VIAIATGSLHCVCCTEDGEVYTWGDNDEGQL 349
Query: 150 GLSPPPSHIVSPTPIPRSSLKSSQPLIGVCCGRFHSVVYSS 190
G + I P + ++L+ + + V CG H++ +S+
Sbjct: 350 GDG-TTNAIQRPRLV--AALQGKK-VNRVACGSAHTLAWST 386
Score = 100 bits (251), Expect = 1e-24
Identities = 30/150 (20%), Positives = 52/150 (34%), Gaps = 16/150 (10%)
Query: 73 HSVFVSDDGRVWSCGHGQGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFL 132
+++ G ++ GH G+LG + V P + +
Sbjct: 12 ENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLR---PVQLIGGEQTLFAV 68
Query: 133 MLSGSVFVCGLNSFHQLGLSPPPSHIVSPTPIPRSSLKSSQ-PLIGVCCGRFHSVVYSSR 191
G ++ G + +LG+ TP S++ + V G H + SS
Sbjct: 69 TADGKLYATGYGAGGRLGI---GGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSE 125
Query: 192 -EVYTFGI-HAGQLGH-------SPVTVSS 212
EVY++G G+LGH P + S
Sbjct: 126 GEVYSWGEAEDGKLGHGNRSPCDRPRVIES 155
Score = 29.5 bits (67), Expect = 1.1
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 8/50 (16%)
Query: 178 VCCGRFHSVVYSSREVYTFGI-HAGQLGH-------SPVTVSSASVIEPK 219
GR + S +Y +G H GQLG P + + + P
Sbjct: 7 HSSGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPV 56
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor,
tryptophan chromophores, homodimer, COP1,
chromatin-binding protein; 1.70A {Arabidopsis thaliana}
PDB: 4dnw_A 4dnu_A 4dnv_A
Length = 406
Score = 128 bits (325), Expect = 6e-35
Identities = 50/195 (25%), Positives = 82/195 (42%), Gaps = 16/195 (8%)
Query: 30 EVYIWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCMDKFHSVFVSDDGRVWSCGHG 89
++Y WG NLG G + R VPE + S + V H++ VS G +++ G
Sbjct: 193 DLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWS 252
Query: 90 QGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCGLNSFHQL 149
+ G+LG G + P KL + ++ H++ L G ++ G N F Q+
Sbjct: 253 KYGQLGHGDLEDHLIPHKLEALSNSFISQISGGW---RHTMALTSDGKLYGWGWNKFGQV 309
Query: 150 GLSPPPSHIVSPTPIPRSSLKSSQPLIGVCCGRFHSVVYSSR-EVYTFGIHA-GQLGH-- 205
G+ SP + Q ++ V CG H++ + R V+ +G GQLG
Sbjct: 310 GV-GNNLDQCSPVQV---RFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGE 365
Query: 206 -----SPVTVSSASV 215
P + + SV
Sbjct: 366 SVDRNFPKIIEALSV 380
Score = 126 bits (318), Expect = 6e-34
Identities = 49/193 (25%), Positives = 72/193 (37%), Gaps = 17/193 (8%)
Query: 30 EVYIWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCMDKFHSVFVSDDG-RVWSCGH 88
V WG + LG G + R P L +L I V H+V S G V+S G
Sbjct: 36 IVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGW 95
Query: 89 GQGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCGLNSFHQ 148
G GRLG G+ S + +P + + + H + + + G V G N Q
Sbjct: 96 GDFGRLGHGNSSDLFTPLPIKALHGIR---IKQIACGDSHCLAVTMEGEVQSWGRNQNGQ 152
Query: 149 LGLSPPPSHIVSPTPIPRSSLKSSQPLIGVCCGRFHSVVYSSR-EVYTFGI-HAGQLGH- 205
LGL + P I + + V G H+ + ++Y +G G LG
Sbjct: 153 LGLGDTEDS-LVPQKI--QAF-EGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLG 208
Query: 206 ------SPVTVSS 212
P V+S
Sbjct: 209 DRTDRLVPERVTS 221
Score = 125 bits (317), Expect = 1e-33
Identities = 50/193 (25%), Positives = 81/193 (41%), Gaps = 16/193 (8%)
Query: 29 NEVYIWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCMDKFHSVFVSDDGRVWSCGH 88
EVY WG LG G+ P + +L IKQ+ H + V+ +G V S G
Sbjct: 88 MEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGR 147
Query: 89 GQGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCGLNSFHQ 148
Q G+LGLG + P+K+ + + M + +H+ + G ++ G +
Sbjct: 148 NQNGQLGLGDTEDSLVPQKIQAFEGIR---IKMVAAGAEHTAAVTEDGDLYGWGWGRYGN 204
Query: 149 LGLSPPPSHIVSPTPIPRSSLKSSQPLIGVCCGRFHS-VVYSSREVYTFGI-HAGQLGH- 205
LGL + + P + + + + V CG H+ V S +YT+G GQLGH
Sbjct: 205 LGLG-DRTDRLVPERV---TSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHG 260
Query: 206 ------SPVTVSS 212
P + +
Sbjct: 261 DLEDHLIPHKLEA 273
Score = 125 bits (316), Expect = 1e-33
Identities = 49/192 (25%), Positives = 90/192 (46%), Gaps = 16/192 (8%)
Query: 30 EVYIWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCMDKFHSVFVSDDGRVWSCGHG 89
EV WG N N LG G + VP+ + + + IK V H+ V++DG ++ G G
Sbjct: 141 EVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWG 200
Query: 90 QGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCGLNSFHQL 149
+ G LGLG + + P+++ + ++M + H++ + SG+++ G + + QL
Sbjct: 201 RYGNLGLGDRTDRLVPERVTSTGGEK---MSMVACGWRHTISVSYSGALYTYGWSKYGQL 257
Query: 150 GLSPPPSHIVSPTPIPRSSLKSSQPLIGVCCGRFHS-VVYSSREVYTFGIHA-GQLGH-- 205
G H++ P + S+ + + G H+ + S ++Y +G + GQ+G
Sbjct: 258 GHGDLEDHLI-PHKLEAL---SNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGN 313
Query: 206 -----SPVTVSS 212
SPV V
Sbjct: 314 NLDQCSPVQVRF 325
Score = 111 bits (279), Expect = 2e-28
Identities = 34/169 (20%), Positives = 68/169 (40%), Gaps = 12/169 (7%)
Query: 30 EVYIWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCMDKFHSVFVSDDGRVWSCGHG 89
+Y +G + LG G + +P L++L + I Q+ H++ ++ DG+++ G
Sbjct: 245 ALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWN 304
Query: 90 QGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCGLNSFHQL 149
+ G++G+G+ SP ++ F D+ V S H++ + +VF G + QL
Sbjct: 305 KFGQVGVGNNLDQCSPVQVRFPDDQK---VVQVSCGWRHTLAVTERNNVFAWGRGTNGQL 361
Query: 150 GLSPPPSHIVSPTPIPRSSLKSSQPLIGVCCGRFHSVVYSSR-EVYTFG 197
G+ P I S+ G+ ++
Sbjct: 362 GIG-ESVDRNFPKIIEALSVD-------GASGQHIESSNIDPSSGKSWV 402
Score = 97.3 bits (243), Expect = 2e-23
Identities = 43/178 (24%), Positives = 68/178 (38%), Gaps = 19/178 (10%)
Query: 45 GSQQTRDVPELLDSLKRASIKQVCMDKFHSVFVSDDGRVWSCGHGQGGRLGLGSESSVVS 104
G + E+ ++ + + HSV + V S G G+ G+LG G S
Sbjct: 1 GMAEDMAADEVTAPPRK--VLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPS 58
Query: 105 PKKLNFEKDKDKLGVAMASISQDHSVFLMLSG-SVFVCGLNSFHQLGLSPPPSHIVSPTP 163
P +L+ + + DH+V SG V+ G F +LG S + +P P
Sbjct: 59 PTQLSALDGHQ---IVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGH-GNSSDLFTPLP 114
Query: 164 IPRSSLKSSQPLIGVCCGRFHS-VVYSSREVYTFGI-HAGQLGH-------SPVTVSS 212
I +L + + CG H V EV ++G GQLG P + +
Sbjct: 115 IK--AL-HGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQA 169
Score = 40.7 bits (96), Expect = 3e-04
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 4/57 (7%)
Query: 29 NEVYIWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCMDKFHSVFVSDDGRVWS 85
N V+ WG N LG G R+ P+++++L + D S
Sbjct: 348 NNVFAWGRGTNGQLGIGESVDRNFPKIIEALSV----DGASGQHIESSNIDPSSGKS 400
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine
nucleotide exchange factor (GEF), GS histones, nucleus,
cell cycle; 1.90A {Saccharomyces cerevisiae}
Length = 473
Score = 117 bits (294), Expect = 3e-30
Identities = 40/205 (19%), Positives = 79/205 (38%), Gaps = 14/205 (6%)
Query: 30 EVYIWGTNANYNLGTG----SQQTRDVPELLDSLKRASIKQVCMDKFHSVFVSDDGRVWS 85
EVY WGT G + + P + + + +I Q+ K H +F+ ++G V++
Sbjct: 168 EVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFA 227
Query: 86 CGHGQGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCGLNS 145
G+GQ +LG + V + ++H L + GLN
Sbjct: 228 WGNGQQNQLGRKVMERFRLKTLD--PRPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQ 285
Query: 146 FHQLGLSPPPSH---IVSPTPIPRSSLKSSQPLIGVCCGRFHSVVYSSR-EVYTFG-IHA 200
F Q G+S + P + L + + + G HS++ S ++Y+ G +
Sbjct: 286 FGQCGVSEDVEDGALVTKPKRLA---LPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDM 342
Query: 201 GQLGHSPVTVSSASVIEPKVQATII 225
++G + + + +A +
Sbjct: 343 FEVGIPKDNLPEYTYKDVHGKARAV 367
Score = 115 bits (290), Expect = 1e-29
Identities = 37/218 (16%), Positives = 73/218 (33%), Gaps = 30/218 (13%)
Query: 30 EVYIWGTNANYNLGTGSQQTRDVPELLDSLKRAS-IKQVCMDKFHSVFVSDDGRVWSCGH 88
V+ WG LG + + L +K + + H ++ D ++ S G
Sbjct: 224 MVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASGENHCFALTKDNKLVSWGL 283
Query: 89 GQGGRLGLGSESS----VVSPKKLNFEKDKDKLGVAMASIS--QDHSVFLMLSGSVFVCG 142
Q G+ G+ + V PK+L + + SI+ + HS+ L G ++ CG
Sbjct: 284 NQFGQCGVSEDVEDGALVTKPKRLALPDNVV-----IRSIAAGEHHSLILSQDGDLYSCG 338
Query: 143 LNSFHQLGLSPPPSHIVSPTPIPRSSLKSSQP--------LIGVCCGRFHSVVYSSR-EV 193
++G+ + + + P V G HSV +
Sbjct: 339 RLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKFKSVAAGSHHSVAVAQNGIA 398
Query: 194 YTFGIHA-GQLGH--------SPVTVSSASVIEPKVQA 222
Y++G +G P + + + + +
Sbjct: 399 YSWGFGETYAVGLGPFEDDTEVPTRIKNTATQDHNIIL 436
Score = 107 bits (269), Expect = 8e-27
Identities = 36/171 (21%), Positives = 61/171 (35%), Gaps = 14/171 (8%)
Query: 29 NEVYIWGTNANYNLGTGSQQTRD----VPELLDSLKRASIKQVCMDKFHSVFVSDDGRVW 84
N++ WG N G P+ L I+ + + HS+ +S DG ++
Sbjct: 276 NKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLY 335
Query: 85 SCGHGQGGRLGLGSESSVVSPKKLNFEKDKDKL---------GVAMASISQDHSVFLMLS 135
SCG +G+ ++ K K + + HSV + +
Sbjct: 336 SCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPKFKSVAAGSHHSVAVAQN 395
Query: 136 GSVFVCGLNSFHQLGLSPPPSHIVSPTPIPRSSLKSSQPLIGVCCGRFHSV 186
G + G + +GL P PT I ++ + +I V CG SV
Sbjct: 396 GIAYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQDHN-IILVGCGGQFSV 445
Score = 100 bits (252), Expect = 2e-24
Identities = 41/227 (18%), Positives = 77/227 (33%), Gaps = 35/227 (15%)
Query: 30 EVYIWGTNANYNLGTGSQQTRD---VPELLDSLKR--ASIKQVCMDKFHSVFVSDDGRVW 84
+++ WGT + LG G P L L R A I + H++ + ++ VW
Sbjct: 30 DIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVW 89
Query: 85 SCGHGQGGRLGLGSESSVVSPKKLNFEKDKDKLG-------------------------- 118
S G G LG + ++ K ++ + D
Sbjct: 90 SWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHK 149
Query: 119 VAMASISQDHSVFLMLSGSVFVCGLNSFHQLGLSPPPSHI-VSPTPIPRSSLKSSQPLIG 177
V + + + S L +G V+ G ++ L I + TP + S ++
Sbjct: 150 VVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTF-SKYNIVQ 208
Query: 178 VCCGRFHSVVYSSR-EVYTFGI-HAGQLGHSPVTVSSASVIEPKVQA 222
+ G+ H + V+ +G QLG + ++P+
Sbjct: 209 LAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFG 255
Score = 85.2 bits (211), Expect = 5e-19
Identities = 35/183 (19%), Positives = 54/183 (29%), Gaps = 31/183 (16%)
Query: 64 IKQVCMDKFHSVFVSDDGRVWSCGHGQGGRLGLGSESSVVSPK--KLNFEKDKDKLGVAM 121
I D H ++ G G LGLG + K +LN +D+ +
Sbjct: 12 IINAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIIS 71
Query: 122 ASISQDHSVFLMLSGSVFVCGLNSFHQLGL----------------------SPPPSHIV 159
++ H++ L +V+ G N LG
Sbjct: 72 FAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELES 131
Query: 160 SPTPIPRSSLKSSQPLIGVC---CGRFHS-VVYSSREVYTFGIHA---GQLGHSPVTVSS 212
+P IPR S V S ++S+ EVY +G G LG +
Sbjct: 132 TPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKI 191
Query: 213 ASV 215
Sbjct: 192 QKT 194
Score = 62.9 bits (153), Expect = 2e-11
Identities = 19/101 (18%), Positives = 32/101 (31%), Gaps = 3/101 (2%)
Query: 108 LNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCGLNSFHQLGLSPPPSHIVSPTPIPRS 167
+ + A H + +F G S +LGL P + P
Sbjct: 1 MGHHHHHHMSHIINAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNP 60
Query: 168 SLKSS-QPLIGVCCGRFHSVVYSSR-EVYTFGIHA-GQLGH 205
L +I G H++ V+++G + G LG
Sbjct: 61 FLPRDEAKIISFAVGGMHTLALDEESNVWSWGCNDVGALGR 101
Score = 61.3 bits (149), Expect = 6e-11
Identities = 24/123 (19%), Positives = 45/123 (36%), Gaps = 18/123 (14%)
Query: 30 EVYIWGTNANYNLGTGSQQTRD--------------VPELLDSLKRASIKQVCMDKFHSV 75
++Y G + +G + +P L+++ + K V HSV
Sbjct: 333 DLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPK--FKSVAAGSHHSV 390
Query: 76 FVSDDGRVWSCGHGQGGRLGLGS-ESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLML 134
V+ +G +S G G+ +GLG E P ++ +D + + SV +
Sbjct: 391 AVAQNGIAYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQDH-NIILVGCGGQFSVSGGV 449
Query: 135 SGS 137
S
Sbjct: 450 KLS 452
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide
exchange factor, GEF, RAN, RAS-like nuclear GTP binding
protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Length = 413
Score = 115 bits (291), Expect = 4e-30
Identities = 41/220 (18%), Positives = 69/220 (31%), Gaps = 35/220 (15%)
Query: 30 EVYIWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCMDK----------------FH 73
++Y G LG + + + K V + +
Sbjct: 184 DLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYF 243
Query: 74 SVFVSDDGRVWSCGHGQGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASIS--QDHSVF 131
+ +S +G V+ G +LG S P+ L K+ + S Q H+V
Sbjct: 244 TFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKN---STKSWVGFSGGQHHTVC 300
Query: 132 LMLSGSVFVCGLNSFHQLGLSPPPSHIVSPTPIPRSSLKSSQPLIGVCCGRFHSVVYSSR 191
+ G + G + +LGL PT I R + V CG +
Sbjct: 301 MDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLP-----AVSSVACGASVGYAVTKD 355
Query: 192 -EVYTFGIHA-GQLGH-------SPVTVSSASVIEPKVQA 222
V+ +G+ QLG SPV + + V +
Sbjct: 356 GRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLS 395
Score = 110 bits (278), Expect = 3e-28
Identities = 45/203 (22%), Positives = 74/203 (36%), Gaps = 15/203 (7%)
Query: 30 EVYIWGTNANYNLGTGSQQT-RDVPELLDSLKRASIKQVCMDKFHSVFVSDDGRVWSCGH 88
V G LG G R P L+ + + Q H+V +S G+V+S G
Sbjct: 28 LVLTLGQGDVGQLGLGENVMERKKPALVSIPED--VVQAEAGGMHTVCLSKSGQVYSFGC 85
Query: 89 GQGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCG--LNSF 146
G LG + E + V S H+ L G VF+ G ++
Sbjct: 86 NDEGALGRDTSVEGSEMVPGKVELQEK---VVQVSAGDSHTAALTDDGRVFLWGSFRDNN 142
Query: 147 HQLGLSPPPSHIVSPTPIPRSSLKSSQPLIGVCCGRFHSVVYSSR-EVYTFGI-HAGQLG 204
+GL P + P + P++ V G H V+ ++ ++YT G GQLG
Sbjct: 143 GVIGLLEPMKKSMVPVQVQ-----LDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLG 197
Query: 205 HSPVTVSSASVIEPKVQATIIRE 227
P ++ + + + +
Sbjct: 198 RVPELFANRGGRQGLERLLVPKC 220
Score = 102 bits (257), Expect = 2e-25
Identities = 43/208 (20%), Positives = 70/208 (33%), Gaps = 29/208 (13%)
Query: 29 NEVYIWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCMDKFHSVFVSDDGRVWSCGH 88
+VY +G N LG + + + QV H+ ++DDGRV+ G
Sbjct: 78 GQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGS 137
Query: 89 GQG--GRLGLGSESSVVS-PKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCGLNS 145
+ G +GL P ++ + V + DH V L G ++ G
Sbjct: 138 FRDNNGVIGLLEPMKKSMVPVQVQLDVP-----VVKVASGNDHLVMLTADGDLYTLGCGE 192
Query: 146 FHQLGL----------SPPPSHIVSPTPIPRSSLKSSQ--PLIGVCCGRFHS-VVYSSRE 192
QLG ++ P + S S CG + + +
Sbjct: 193 QGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGH 252
Query: 193 VYTFGI-HAGQLGH-------SPVTVSS 212
VY FG+ + QLG P ++S
Sbjct: 253 VYGFGLSNYHQLGTPGTESCFIPQNLTS 280
Score = 88.5 bits (220), Expect = 3e-20
Identities = 33/152 (21%), Positives = 51/152 (33%), Gaps = 12/152 (7%)
Query: 62 ASIKQVCMDKFHSVFVSDDGRVWSCGHGQGGRLGLGSESSVVSPKKLNFEKDKDKLGVAM 121
A K + H ++ G V + G G G+LGLG L V
Sbjct: 8 AIPKSKKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALV----SIPEDVVQ 63
Query: 122 ASISQDHSVFLMLSGSVFVCGLNSFHQLGLSPPPSHIVSPTPIPRSSLKSSQPLIGVCCG 181
A H+V L SG V+ G N LG + + +P + ++ V G
Sbjct: 64 AEAGGMHTVCLSKSGQVYSFGCNDEGALGR---DTSVEGSEMVPGKVE-LQEKVVQVSAG 119
Query: 182 RFHS-VVYSSREVYTFGIHA---GQLGHSPVT 209
H+ + V+ +G G +G
Sbjct: 120 DSHTAALTDDGRVFLWGSFRDNNGVIGLLEPM 151
Score = 72.4 bits (178), Expect = 1e-14
Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 4/110 (3%)
Query: 30 EVYIWGTNANYNLGTG-SQQTRDVPELLDSLKRASIKQVCMDKFHSVFVSDDGRVWSCGH 88
+ Y G LG G + + +P L+ L + V V+ DGRV++ G
Sbjct: 306 KAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPA--VSSVACGASVGYAVTKDGRVFAWGM 363
Query: 89 GQGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSV 138
G +LG G + SP ++ ++ +++ V S H+V L+
Sbjct: 364 GTNYQLGTGQDEDAWSPVEMMGKQLENR-VVLSVSSGGQHTVLLVKDKEQ 412
Score = 43.1 bits (102), Expect = 6e-05
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 29 NEVYIWGTNANYNLGTGSQQTRDVPELLD--SLKRASIKQVCMDKFHSVFVSDDG 81
V+ WG NY LGTG + P + L+ + V H+V + D
Sbjct: 356 GRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDK 410
>3mvd_K Regulator of chromosome condensation; protein-DNA complex,
nucleosome core particle (NCP), NCP-CHR factor complex;
HET: DNA; 2.90A {Drosophila melanogaster}
Length = 423
Score = 113 bits (286), Expect = 2e-29
Identities = 36/214 (16%), Positives = 72/214 (33%), Gaps = 29/214 (13%)
Query: 30 EVYIWGTNANYNLGTGSQQTRD-----------VPELLDSLKRASIKQVCMDKFHSVFV- 77
+V+ G LG S+++ P L + + + + +
Sbjct: 199 KVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRE 258
Query: 78 SDDGRVWSCGHGQGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGS 137
S +W+ G +L ++ + + E + + Q H+V L
Sbjct: 259 SQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELK----DIRHIAGGQHHTVILTTDLK 314
Query: 138 VFVCGLNSFHQLGLSPPPSHIVSPTPIPRSSLKSSQPLIGVCCGRFHSVVYSSR-EVYTF 196
V G + +LGL + PT + K ++ ++ V CG S + ++Y++
Sbjct: 315 CSVVGRPEYGRLGLGDVKDVVEKPTIVK----KLTEKIVSVGCGEVCSYAVTIDGKLYSW 370
Query: 197 GIHA-GQLGH-------SPVTVSSASVIEPKVQA 222
G QLG P+ V S + +
Sbjct: 371 GSGVNNQLGVGDGDDELEPIVVVSKNTQGKHMLL 404
Score = 108 bits (273), Expect = 2e-27
Identities = 33/191 (17%), Positives = 66/191 (34%), Gaps = 16/191 (8%)
Query: 30 EVYIWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCMDKFHSVFVSDDGRVWSCGHG 89
V+ WG+ + + G + +D ++ + H V ++ G+V++ G
Sbjct: 147 RVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCA 206
Query: 90 QGGRLGLGSESSVVSPKKLNFEKD--------KDKLGVAMASISQDHSVFLM-LSGSVFV 140
+ G+LG SE S+ + + + + ++
Sbjct: 207 EQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWA 266
Query: 141 CGLNSFHQLGLSPPPSHIVSPTPIPRSSLKSSQPLIGVCCGRFHSVVYSSR-EVYTFGIH 199
GLN+F QL + TPI + G+ H+V+ ++ + G
Sbjct: 267 TGLNNFKQLAHETKGKE-FALTPIKTELKDIRH----IAGGQHHTVILTTDLKCSVVGRP 321
Query: 200 A-GQLGHSPVT 209
G+LG V
Sbjct: 322 EYGRLGLGDVK 332
Score = 103 bits (258), Expect = 2e-25
Identities = 35/190 (18%), Positives = 65/190 (34%), Gaps = 19/190 (10%)
Query: 29 NEVYIWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCMDKFHSVFVSDDGRVWSCGH 88
++Y +G N LG + + + + HS + +DGRV++ G
Sbjct: 94 GDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGS 153
Query: 89 GQG--GRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCGLNSF 146
+ G +GL + + +P L + + DH V L +G VF G
Sbjct: 154 FRDSHGNMGLTIDGNKRTPIDL-----MEGTVCCSIASGADHLVILTTAGKVFTVGCAEQ 208
Query: 147 HQLGL--------SPPPSHIVSPTPIPRSSLKSSQPLIGVCCGRFHSVVYSS--REVYTF 196
QLG P ++ P + + + + S + ++
Sbjct: 209 GQLGRLSERSISGEGRRGKRDLLRPTQLIITRAK-PFEAIWATNYCTFMRESQTQVIWAT 267
Query: 197 GI-HAGQLGH 205
G+ + QL H
Sbjct: 268 GLNNFKQLAH 277
Score = 101 bits (254), Expect = 6e-25
Identities = 39/190 (20%), Positives = 62/190 (32%), Gaps = 16/190 (8%)
Query: 30 EVYIWGTNANYNLGTGSQ-QTRDVPELLDSLKRASIKQVCMDKFHSVFVSDDGRVWSCGH 88
V + G LG G R + + + H++ ++ G ++S G
Sbjct: 44 NVLVCGNGDVGQLGLGEDILERKRLSPVAGIPD--AVDISAGGMHNLVLTKSGDIYSFGC 101
Query: 89 GQGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCG--LNSF 146
G LG + K + S HS L+ G VF G +S
Sbjct: 102 NDEGALGRDTSEDGSESKPDLIDLPGK---ALCISAGDSHSACLLEDGRVFAWGSFRDSH 158
Query: 147 HQLGLSPPPSHIVSPTPIPRSSLKSSQPLIGVCCGRFHSVVYSSR-EVYTFGI-HAGQLG 204
+GL+ + TPI + G H V+ ++ +V+T G GQLG
Sbjct: 159 GNMGLTIDGNK---RTPIDLMEGT---VCCSIASGADHLVILTTAGKVFTVGCAEQGQLG 212
Query: 205 HSPVTVSSAS 214
S
Sbjct: 213 RLSERSISGE 222
Score = 101 bits (253), Expect = 1e-24
Identities = 28/162 (17%), Positives = 61/162 (37%), Gaps = 10/162 (6%)
Query: 31 VYIWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCMDKFHSVFVSDDGRVWSCGHGQ 90
++ G N L ++ + + + I+ + + H+V ++ D + G +
Sbjct: 264 IWATGLNNFKQLAHETKGKEFALTPIKTELK-DIRHIAGGQHHTVILTTDLKCSVVGRPE 322
Query: 91 GGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASIS--QDHSVFLMLSGSVFVCGLNSFHQ 148
GRLGLG VV + KL + S+ + S + + G ++ G +Q
Sbjct: 323 YGRLGLGDVKDVVEKPTI-----VKKLTEKIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQ 377
Query: 149 LGLSPPPSHIVSPTPIPRSSLKSSQPLIGVCCGRFHSVVYSS 190
LG+ + P + + + ++ G H++
Sbjct: 378 LGVG-DGDDELEPIVVVSKNTQGKH-MLLASGGGQHAIFLVK 417
Score = 87.0 bits (216), Expect = 1e-19
Identities = 34/200 (17%), Positives = 57/200 (28%), Gaps = 37/200 (18%)
Query: 35 GTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCMDKFHSVFVSDDGRVWSCGHGQGGRL 94
G+ L + +A ++ + G V CG+G G+L
Sbjct: 1 GSPRRKALTNNNNAGEAEQ----QPPKAKRARIAFHLELPKRRTVLGNVLVCGNGDVGQL 56
Query: 95 GLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCGLNSFHQLGL--- 151
GLG + S H++ L SG ++ G N LG
Sbjct: 57 GLGEDILERKRLSPV----AGIPDAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTS 112
Query: 152 ----SPPPSHIVSPTPIPRSSLKSSQPLIGVCCGRFHS-VVYSSREVYTFGIHA---GQL 203
P I P + + G HS + V+ +G G +
Sbjct: 113 EDGSESKPDLIDLPGKA-----------LCISAGDSHSACLLEDGRVFAWGSFRDSHGNM 161
Query: 204 GH-------SPVTVSSASVI 216
G +P+ + +V
Sbjct: 162 GLTIDGNKRTPIDLMEGTVC 181
Score = 69.7 bits (171), Expect = 9e-14
Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 3/108 (2%)
Query: 30 EVYIWGTNANYNLGTGSQQTR-DVPELLDSLKRASIKQVCMDKFHSVFVSDDGRVWSCGH 88
+ + G LG G + + P ++ L I V + S V+ DG+++S G
Sbjct: 314 KCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTE-KIVSVGCGEVCSYAVTIDGKLYSWGS 372
Query: 89 GQGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSG 136
G +LG+G + P + + + K + +AS H++FL+ +
Sbjct: 373 GVNNQLGVGDGDDELEPIVVVSKNTQGK-HMLLASGGGQHAIFLVKAD 419
Score = 44.3 bits (105), Expect = 2e-05
Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 29 NEVYIWGTNANYNLGTGSQQTRDVPELLDS--LKRASIKQVCMDKFHSVFVSDDGR 82
++Y WG+ N LG G P ++ S + + H++F+ +
Sbjct: 365 GKLYSWGSGVNNQLGVGDGDDELEPIVVVSKNTQGKHMLLASGGGQHAIFLVKADK 420
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex,
beta-propeller, protein:protein interaction; 2.06A
{Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Length = 282
Score = 74.3 bits (183), Expect = 1e-15
Identities = 33/188 (17%), Positives = 53/188 (28%), Gaps = 45/188 (23%)
Query: 30 EVYIWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCMDKFHSVFVSDDGRVWSCGHG 89
V WG N ++ T VP S + + FH + + G+V G
Sbjct: 3 SVVAWGGNNDWGEAT-------VPAEAQS----GVDAIAGGYFHGLAL-KGGKVLGWGAN 50
Query: 90 QGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCGLNSFHQL 149
G+L + + + GV + HS+ L G V G N Q
Sbjct: 51 LNGQLTMPAATQS---------------GVDAIAAGNYHSLAL-KDGEVIAWGGNEDGQT 94
Query: 150 GLSPPPSHIVSPTPIPRSSLKSSQPLIGVCCGRFHSVVYSSREVYTFG-IHAGQLGHSPV 208
+ V + G + S +V +G GQ
Sbjct: 95 TVPAEARSGV----------------DAIAAGAWASYALKDGKVIAWGDDSDGQTTVPAE 138
Query: 209 TVSSASVI 216
S + +
Sbjct: 139 AQSGVTAL 146
Score = 66.9 bits (164), Expect = 4e-13
Identities = 25/187 (13%), Positives = 55/187 (29%), Gaps = 48/187 (25%)
Query: 30 EVYIWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCMDKFHSVFVSDDGRVWSCGHG 89
+V WG +++ ++ V + + ++ +G V + G
Sbjct: 121 KVIAWGDDSDGQTTVPAEAQSGV------------TALDGGVYTAL-AVKNGGVIAWGDN 167
Query: 90 QGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCGLNSFHQL 149
G+ + +E+ GV + HS+ L G V G N + Q
Sbjct: 168 YFGQTTVPAEAQS---------------GVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQT 211
Query: 150 GLSPPP-SHIVSPTPIPRSSLKSSQPLIGVCCGRFHSVVYSSREVYTFGI-HAGQLGHSP 207
+ S + + + G ++S+ + +V +G
Sbjct: 212 TVPTEALSGVSA-----------------IASGEWYSLALKNGKVIAWGSSRTAPSSVQS 254
Query: 208 VTVSSAS 214
S +
Sbjct: 255 GVSSIEA 261
Score = 41.5 bits (98), Expect = 2e-04
Identities = 17/83 (20%), Positives = 24/83 (28%), Gaps = 16/83 (19%)
Query: 135 SGSVFVCGLNSFHQLGLSPPPSHIVSPTPIPRSSLKSSQPLIGVCCGRFHSVVYSSREVY 194
+ SV G N+ P S + + G FH + +V
Sbjct: 1 ATSVVAWGGNNDWGEA----------TVPAEAQS-----GVDAIAGGYFHGLALKGGKVL 45
Query: 195 TFGI-HAGQLGHSPVTVSSASVI 216
+G GQL T S I
Sbjct: 46 GWGANLNGQLTMPAATQSGVDAI 68
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.5 bits (91), Expect = 0.001
Identities = 38/323 (11%), Positives = 91/323 (28%), Gaps = 94/323 (29%)
Query: 3 VMDNEEMRPIDHLIRDRKIDVSSNQFNEVY--IWGTNANYNLGTGSQQTRDVPELLDSLK 60
++ EE IDH+I S + + W S+Q V + ++ +
Sbjct: 45 ILSKEE---IDHIIM------SKDAVSGTLRLFWTLL--------SKQEEMVQKFVEEVL 87
Query: 61 R-------ASIKQVCMDK--FHSVFVSDDGRVWSCGHGQGGRLGLGSESSVVSPKKLN-- 109
R + IK +++ R+++ + ++ +V +
Sbjct: 88 RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ-------VFAKYNVSRLQPYLKL 140
Query: 110 ---FEKDKDKLGVA---M---------ASISQDHSVFLMLSGSVF-----VCG------- 142
+ + V + + + V + +F C
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200
Query: 143 -LNSF-HQLG--LSPPPSHIVSPTPIPRSSLKSSQPLIGVCCGRFHS----V---VYSSR 191
L +Q+ + H + + S+++ L + + + V V +++
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNI-KLRIHSIQAE--LRRLLKSKPYENCLLVLLNVQNAK 257
Query: 192 EVYTFGIHAGQLGHSPVTVSSASVIEPKVQATIIREDLPGFIFESNRGTKHSFTAETSLG 251
F + L +T V + AT L + + T T +
Sbjct: 258 AWNAFNLSCKIL----LTTRFKQVTDFLSAATTTHISL-----DHHSMT---LTPDEVK- 304
Query: 252 PEFGGGWTGKKGKRLRSKLEAVK 274
+ + + L E +
Sbjct: 305 -SLLLKYLDCRPQDLPR--EVLT 324
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.014
Identities = 11/81 (13%), Positives = 28/81 (34%), Gaps = 23/81 (28%)
Query: 1 MTVMDNEEMRPIDHLIRDRKIDVSSNQFNEVYIWGTNANYNLGTGSQ-----QTRDVPEL 55
+ ++E + +++ ++ + E+ NYN+ Q R + +
Sbjct: 1817 VAASFSQEA--LQYVVE--RVGKRTGWLVEI------VNYNVE-NQQYVAAGDLRALDTV 1865
Query: 56 ---LDSLKRASIK----QVCM 69
L+ +K I Q +
Sbjct: 1866 TNVLNFIKLQKIDIIELQKSL 1886
Score = 31.9 bits (72), Expect = 0.26
Identities = 39/275 (14%), Positives = 72/275 (26%), Gaps = 105/275 (38%)
Query: 5 DNEEMRPIDHLIR-----DRKIDVSS------------NQFNEVYIWGTN---------- 37
D+E P + + + ++ S +F Y+ G +
Sbjct: 51 DDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQ 110
Query: 38 -------------ANY---NLGTGSQQTRDVPELLDSLKRASIKQVCMDKFHSVFVSDDG 81
NY + + L + + ++F
Sbjct: 111 ENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL--FRAVGEGNA---QLVAIF----- 160
Query: 82 RVWSCGHGQGGRLG----LGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGS 137
G GQG L + L ++ +G + ++ L +
Sbjct: 161 -----G-GQGNTDDYFEEL---------RDL-YQTYHVLVGDLIKFSAE---TLSELIRT 201
Query: 138 VFVCGLNSFHQLGL-----------SPPPSHIVSPTPIPRSSLKSSQPLIGVC-CGRF-- 183
GL +P +++S PI S PLIGV +
Sbjct: 202 TLDA--EKVFTQGLNILEWLENPSNTPDKDYLLS-IPI-------SCPLIGVIQLAHYVV 251
Query: 184 --HSVVYSSREVYTFGIHAGQLGHSPVTVSSASVI 216
+ ++ E+ G GHS V +A I
Sbjct: 252 TAKLLGFTPGEL--RSYLKGATGHSQGLV-TAVAI 283
Score = 30.0 bits (67), Expect = 1.2
Identities = 19/98 (19%), Positives = 27/98 (27%), Gaps = 34/98 (34%)
Query: 40 YNLGTGSQQTRDVPELLDSLKRASIKQVCMDKFHSVFVSDDGRVW------SCGH----G 89
Y+ GS D+ L S+ + + W H G
Sbjct: 460 YDTFDGS----DLRVLSGSISERIVDCIIRLPVK----------WETTTQFKATHILDFG 505
Query: 90 QGGRLGLGSESS---------VVSPKKLNFEKDKDKLG 118
GG GLG + V+ L+ D D G
Sbjct: 506 PGGASGLGVLTHRNKDGTGVRVIVAGTLDINPD-DDYG 542
>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F
membrane, envelope protein, fusion protein, membrane,
trans virion; HET: NAG BMA; 3.20A {Homo sapiens}
Length = 280
Score = 32.3 bits (74), Expect = 0.13
Identities = 15/55 (27%), Positives = 18/55 (32%), Gaps = 13/55 (23%)
Query: 180 CGRFHSVVYSSREVYTFGIHAGQLGHSPVTVSSASVIEPKVQAT---IIREDLPG 231
C + SS FG G + +TV P A I EDL G
Sbjct: 228 CSTW----DSSLSAVVFG------GGTKLTVLGQPKAAPSAAAEQKLISEEDLNG 272
>1xfs_A NC_840354, conserved hypothetical protein; structural genomics,
protein structure initiative, NESG, ALP protein, PSI;
1.70A {Nitrosomonas europaea} SCOP: d.129.3.5
Length = 178
Score = 29.6 bits (66), Expect = 0.76
Identities = 13/67 (19%), Positives = 21/67 (31%), Gaps = 7/67 (10%)
Query: 181 GRFHSVVYSSREVYTFGIHAGQLGHSPVTVSSASVIEPKVQATIIREDLPGFIFESNRGT 240
G F V R ++T + P T S + A I + GT
Sbjct: 75 GCFLEVTDEKRLIWTSALVKNYRPAVPATTSDKECAHIVMTAVIELQPTSS-------GT 127
Query: 241 KHSFTAE 247
+++ A
Sbjct: 128 RYTACAM 134
>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural
genomics, PSI, protein structure initiative; NMR
{Rhodopseudomonas palustris} SCOP: c.103.1.1
Length = 135
Score = 28.4 bits (63), Expect = 1.6
Identities = 6/29 (20%), Positives = 14/29 (48%)
Query: 42 LGTGSQQTRDVPELLDSLKRASIKQVCMD 70
+GTG+ +L ++L+ ++ M
Sbjct: 73 VGTGADVWIAPRQLREALRGVNVVLDTMQ 101
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase
complex, ring zinc-finger, UBL conjugation pathway;
2.10A {Homo sapiens} PDB: 2yhn_A
Length = 79
Score = 27.0 bits (60), Expect = 1.8
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 8/45 (17%)
Query: 45 GSQQTRDVPELLDSLKRASIKQVCMDK-FHSVFVSDDGRVWSCGH 88
G+QQTR + E L LK A + VC ++ +S F CGH
Sbjct: 1 GAQQTRVLQEKLRKLKEAMLCMVCCEEEINSTFC-------PCGH 38
>2fi9_A Outer membrane protein; bartonella hense protein structure
initiative, midwest center for structural genomics,
MCSG; 1.80A {Bartonella henselae} SCOP: c.103.1.1
Length = 128
Score = 27.9 bits (62), Expect = 2.2
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 42 LGTGSQQTRDVPELLDSLKRASIKQVCMD 70
+GTG + R EL L I M
Sbjct: 74 IGTGVELLRLPEELRVLLWEKRISSDTMS 102
>3c5b_A Putative uncharacterized protein; capsid protein, HK97 fold,
icosahedral virus; 4.50A {Enterobacteria phage
EPSILON15}
Length = 335
Score = 28.6 bits (63), Expect = 2.2
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 6/56 (10%)
Query: 213 ASVIEPKVQATIIREDLPGFIFESNRGTKHSFTAETSL-GPEF---GGGWTGKKGK 264
A ++E + I D ++ N G+KH T + P + G K +
Sbjct: 25 ARIVEQLAKTNDILTDAI-YV-PCNDGSKHKTTIRAGIPEPVWRRYNQGVQPTKTQ 78
>2il5_A Hypothetical protein; structural genomics, APC23650, PSI-2,
structure initiative; 2.30A {Staphylococcus aureus
subsp} SCOP: d.129.3.5
Length = 171
Score = 27.9 bits (62), Expect = 2.8
Identities = 10/80 (12%), Positives = 16/80 (20%), Gaps = 2/80 (2%)
Query: 181 GRFHSVVYSSREVYTFGIHAGQLGHSPVTVSSASVIEPKVQATIIREDLPGFIFESNRGT 240
G + S+V T G+ + V Q L E
Sbjct: 79 GIYESLVMDEYVKMTIGMPGLSETQDVIEVEFFERETGGTQMLFYYRSLVE--KERRFTN 136
Query: 241 KHSFTAETSLGPEFGGGWTG 260
+ G+
Sbjct: 137 LEYKQKKKEYHDAMVHGFEL 156
>1t1u_A Choline O-acetyltransferase; choline acetyltransferase; 1.55A
{Rattus norvegicus} SCOP: c.43.1.3 c.43.1.3 PDB: 1q6x_A
2fy2_A 2fy3_A 2fy4_A* 2fy5_A*
Length = 639
Score = 27.5 bits (60), Expect = 6.0
Identities = 32/193 (16%), Positives = 56/193 (29%), Gaps = 40/193 (20%)
Query: 1 MTVMDNEEMRPIDHLIRDRKIDVSSNQFNEVYIW-----GTNANYNLGTGSQQTRDV--- 52
+ V + +D +I R++ I +G + R
Sbjct: 195 VIVACCNQFFVLDVVINFRRLSEGDLFTQLRKIVKMASNEDERLPPIGLLTSDGRSEWAK 254
Query: 53 -----------PELLDSLKRASIKQVCMDKFHSVFVSDDGRVWSCGHGQGGRLGLGSESS 101
+ LD ++R VC+D + +SD R HG GG G+
Sbjct: 255 ARTVLLKDSTNRDSLDMIERCIC-LVCLDGPGTGELSDTHRALQLLHG-GGCSLNGA--- 309
Query: 102 VVSPKKLNFEKDK---------DKLGVAMASISQDHSVFLMLSGSVFVCGLNSFHQLGLS 152
N DK GV D V + + + + S +L +
Sbjct: 310 -------NRWYDKSLQFVVGRDGTCGVVCEHSPFDGIVLVQCTEHLLKHMMTSNKKLVRA 362
Query: 153 PPPSHIVSPTPIP 165
S + +P +
Sbjct: 363 DSVSELPAPRRLR 375
>3d1g_A DNA polymerase III subunit beta; chemical probe, DNA sliding clamp,
DNA replication, rational drug design, antibiotic
target, transferase; HET: DNA 322; 1.64A {Escherichia
coli} SCOP: d.131.1.1 d.131.1.1 d.131.1.1 PDB: 1mmi_A*
1unn_A* 2pol_A* 3bep_A* 3d1e_A* 3d1f_A* 1ok7_A* 3q4j_A*
3q4k_A* 3qsb_A* 3q4l_A* 2xur_A* 1jql_A* 1jqj_A* 3f1v_A*
3pwe_A*
Length = 366
Score = 27.1 bits (61), Expect = 6.5
Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 51 DVPELLDSLKRASIKQVCMDKFHSV 75
L + RA+I + +KF V
Sbjct: 259 GCDLLKQAFARAAI--LSNEKFRGV 281
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.398
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,072,189
Number of extensions: 227692
Number of successful extensions: 787
Number of sequences better than 10.0: 1
Number of HSP's gapped: 679
Number of HSP's successfully gapped: 56
Length of query: 278
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 186
Effective length of database: 4,133,061
Effective search space: 768749346
Effective search space used: 768749346
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.7 bits)