RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5940
(278 letters)
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 401
Score = 69.4 bits (168), Expect = 4e-14
Identities = 30/134 (22%), Positives = 43/134 (32%), Gaps = 6/134 (4%)
Query: 73 HSVFVSDDGRVWSCGHGQGGRLGLGSESSVVS-PKKLNFEKDKDKLGVAMASISQDHSVF 131
H ++ G V + G G G+LGLG P ++ +D V A H+V
Sbjct: 7 HRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPED-----VVQAEAGGMHTVC 61
Query: 132 LMLSGSVFVCGLNSFHQLGLSPPPSHIVSPTPIPRSSLKSSQPLIGVCCGRFHSVVYSSR 191
L SG V+ G N LG K Q G +
Sbjct: 62 LSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVF 121
Query: 192 EVYTFGIHAGQLGH 205
+F + G +G
Sbjct: 122 LWGSFRDNNGVIGL 135
Score = 61.4 bits (147), Expect = 2e-11
Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 4/110 (3%)
Query: 29 NEVYIWGTNANYNLGTGSQQT-RDVPELLDSLKRASIKQVCMDKFHSVFVSDDGRVWSCG 87
+ Y G LG G + +P L+ L ++ V V+ DGRV++ G
Sbjct: 293 GKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLP--AVSSVACGASVGYAVTKDGRVFAWG 350
Query: 88 HGQGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGS 137
G +LG G + SP ++ ++ +++ V S H+V L+
Sbjct: 351 MGTNYQLGTGQDEDAWSPVEMMGKQLENR-VVLSVSSGGQHTVLLVKDKE 399
Score = 61.0 bits (146), Expect = 3e-11
Identities = 28/186 (15%), Positives = 48/186 (25%), Gaps = 7/186 (3%)
Query: 30 EVYIWGTNANYNLGTGSQQT-RDVPELLDSLKRASIKQVCMDKFHSVFVSDDGRVWSCGH 88
V G LG G R P L+ + + Q H+V +S G+V+S G
Sbjct: 16 LVLTLGQGDVGQLGLGENVMERKKPALVSIPED--VVQAEAGGMHTVCLSKSGQVYSFGC 73
Query: 89 GQGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCGLNSFHQ 148
G LG + E + + + D + +
Sbjct: 74 NDEGALGRDTSVEGSEMVPGKVELQEKV----VQVSAGDSHTAALTDDGRVFLWGSFRDN 129
Query: 149 LGLSPPPSHIVSPTPIPRSSLKSSQPLIGVCCGRFHSVVYSSREVYTFGIHAGQLGHSPV 208
G+ + + L + + GQLG P
Sbjct: 130 NGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPE 189
Query: 209 TVSSAS 214
++
Sbjct: 190 LFANRG 195
Score = 58.3 bits (139), Expect = 2e-10
Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 8/125 (6%)
Query: 64 IKQVCMDKFHSVFVSDDGRVWSCGHGQGGRLGLGSESSVVS-PKKLNFEKDKDKLGVAMA 122
+ H+V + +G+ +S G + GRLGLG + S P ++ V+
Sbjct: 276 WVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLP-----AVSSV 330
Query: 123 SISQDHSVFLMLSGSVFVCGLNSFHQLGLSPPPSHIVSPTPIPRSSLKSSQPLIGVCCGR 182
+ + G VF G+ + +QLG SP + L++ ++ V G
Sbjct: 331 ACGASVGYAVTKDGRVFAWGMGTNYQLGT-GQDEDAWSPVEMMGKQLENRV-VLSVSSGG 388
Query: 183 FHSVV 187
H+V+
Sbjct: 389 QHTVL 393
Score = 56.7 bits (135), Expect = 8e-10
Identities = 20/84 (23%), Positives = 28/84 (33%), Gaps = 7/84 (8%)
Query: 124 ISQDHSVFLMLSGSVFVCGLNSFHQLGLSPPPSHIVSPTPIPRSSLKSSQPLIGVCCGRF 183
+ H G V G QLGL P + + ++ G
Sbjct: 3 VKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVS-----IPEDVVQAEAGGM 57
Query: 184 HSVVYSSR-EVYTFGI-HAGQLGH 205
H+V S +VY+FG G LG
Sbjct: 58 HTVCLSKSGQVYSFGCNDEGALGR 81
Score = 49.4 bits (116), Expect = 2e-07
Identities = 38/199 (19%), Positives = 63/199 (31%), Gaps = 15/199 (7%)
Query: 33 IWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCMDKFHSVFVSDDGRVWSCGHGQGG 92
L + + S + + + +S +G V+ G
Sbjct: 191 FANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYH 250
Query: 93 RLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCGLNSFHQLGLS 152
+LG S P+ L K+ K V + Q H+V + G + G + +LGL
Sbjct: 251 QLGTPGTESCFIPQNLTSFKNSTKSWVGFSGG-QHHTVCMDSEGKAYSLGRAEYGRLGLG 309
Query: 153 PPPSHIVSPTPIPRSSLKSSQPLIGVCCGRFHSVVYSSR-EVYTFGIHA-GQLGH----- 205
PT I R + V CG + V+ +G+ QLG
Sbjct: 310 EGAEEKSIPTLISRLP-----AVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDED 364
Query: 206 --SPVTVSSASVIEPKVQA 222
SPV + + V +
Sbjct: 365 AWSPVEMMGKQLENRVVLS 383
Score = 38.6 bits (88), Expect = 5e-04
Identities = 30/171 (17%), Positives = 53/171 (30%), Gaps = 14/171 (8%)
Query: 29 NEVYIWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCMDKFHSVFVSDDGRVWSCGH 88
+VY +G N LG + + + QV H+ ++DDGRV+ G
Sbjct: 66 GQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGS 125
Query: 89 GQGGRLGLGSESSVVSPKKLNFEKDKDKLGVAMASISQDHSVFLMLSGSVFVCGLNSFHQ 148
+ +G K + + + + V + DH V L G ++ G Q
Sbjct: 126 FRDNNGVIGLLEP--MKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQ 183
Query: 149 LGLSP------------PPSHIVSPTPIPRSSLKSSQPLIGVCCGRFHSVV 187
LG P + + + CG + +
Sbjct: 184 LGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFA 234
Score = 34.0 bits (76), Expect = 0.014
Identities = 26/161 (16%), Positives = 49/161 (30%), Gaps = 13/161 (8%)
Query: 65 KQVCMDKFHSVFVSDDGRVWSCGHGQGGRLGLGSESSVVSPKKLNFEK------------ 112
+V H V ++ DG +++ G G+ G+LG E + E+
Sbjct: 155 VKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSR 214
Query: 113 -DKDKLGVAMASISQDHSVFLMLSGSVFVCGLNSFHQLGLSPPPSHIVSPTPIPRSSLKS 171
+ + A + + G V+ GL+++HQLG S + +
Sbjct: 215 GSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTK 274
Query: 172 SQPLIGVCCGRFHSVVYSSREVYTFGIHAGQLGHSPVTVSS 212
S + + G+LG
Sbjct: 275 SWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEK 315
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II
{Streptomyces exfoliatus [TaxId: 1905]}
Length = 273
Score = 42.8 bits (99), Expect = 2e-05
Identities = 11/79 (13%), Positives = 27/79 (34%), Gaps = 13/79 (16%)
Query: 27 QFNEVYIWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCMDKFHSVFVSDDGRVWSC 86
+ +V WG N ++ V + +++S+ + +G+V +
Sbjct: 198 KDGKVIAWGDNRYKQTTVPTEALSGV------------SAIASGEWYSLAL-KNGKVIAW 244
Query: 87 GHGQGGRLGLGSESSVVSP 105
G + + S S +
Sbjct: 245 GSSRTAPSSVQSGVSSIEA 263
Score = 35.9 bits (81), Expect = 0.003
Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 12/66 (18%)
Query: 29 NEVYIWGTNANYNLGTGSQQTRDVPELLDSLKRASIKQVCMDKFHSVFVSDDGRVWSCGH 88
V WG N ++ T VP S + + FH + + G+V G
Sbjct: 4 TSVVAWGGNNDWGEAT-------VPAEAQS----GVDAIAGGYFHGLAL-KGGKVLGWGA 51
Query: 89 GQGGRL 94
G+L
Sbjct: 52 NLNGQL 57
Score = 34.0 bits (76), Expect = 0.015
Identities = 11/96 (11%), Positives = 24/96 (25%), Gaps = 19/96 (19%)
Query: 121 MASISQDHSVFLMLSGSVFVCGLNSFHQLGLSPP-PSHIVSPTPIPRSSLKSSQPLIGVC 179
+ G V G N + Q + S + + +
Sbjct: 185 DDVAGGIFHSLALKDGKVIAWGDNRYKQTTVPTEALSGVSA-----------------IA 227
Query: 180 CGRFHSVVYSSREVYTFGIHA-GQLGHSPVTVSSAS 214
G ++S+ + +V +G S +
Sbjct: 228 SGEWYSLALKNGKVIAWGSSRTAPSSVQSGVSSIEA 263
Score = 29.7 bits (65), Expect = 0.36
Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 15/63 (23%)
Query: 135 SGSVFVCGLNSFHQLGLSPPPSHIVSPTPIPRSSLKSSQPLIGVCCGRFHSVVYSSREVY 194
+ SV G N+ G + P+ ++ + + G FH + +V
Sbjct: 3 ATSVVAWGGNN--DWGEATVPA-------------EAQSGVDAIAGGYFHGLALKGGKVL 47
Query: 195 TFG 197
+G
Sbjct: 48 GWG 50
Score = 25.9 bits (55), Expect = 6.1
Identities = 10/32 (31%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 118 GVAMASISQDHSVFLMLSGSVFVCGLNSFHQL 149
GV + H + L G V G N QL
Sbjct: 27 GVDAIAGGYFHGLALK-GGKVLGWGANLNGQL 57
>d1xn6a_ d.129.3.5 (A:) Hypothetical protein BC4709 {Bacillus cereus
[TaxId: 1396]}
Length = 143
Score = 27.5 bits (60), Expect = 1.0
Identities = 9/91 (9%), Positives = 28/91 (30%), Gaps = 9/91 (9%)
Query: 181 GRFHSVVYSSREVYTFGIHAGQLGHSPVTVSSASVIEPKVQATIIREDLPGFIFESNRGT 240
+ + + +++ V+ + + K + T+I +
Sbjct: 61 CKVLEIDEPNHLSFSWDT-----DGWVVSFDLKDLGDNKTEFTLIHGGWK----HPDEIL 111
Query: 241 KHSFTAETSLGPEFGGGWTGKKGKRLRSKLE 271
+ + + GGW ++L+ +E
Sbjct: 112 PKANAKSSIIRDRMSGGWVAIVNEKLKKVVE 142
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 206
Score = 27.3 bits (59), Expect = 1.8
Identities = 6/32 (18%), Positives = 11/32 (34%), Gaps = 6/32 (18%)
Query: 144 NSFHQLGLSPP------PSHIVSPTPIPRSSL 169
N+F L + P+PI ++
Sbjct: 1 NTFEDFYLKRELLMGIFEAGFEKPSPIQEEAI 32
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 206
Score = 25.7 bits (55), Expect = 6.0
Identities = 7/32 (21%), Positives = 9/32 (28%), Gaps = 6/32 (18%)
Query: 144 NSFHQLGLSPP------PSHIVSPTPIPRSSL 169
N F L P+PI S+
Sbjct: 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESI 34
>d2fi9a1 c.103.1.1 (A:11-128) Hypothetical outer membrane protein
BH05650 {Bartonella henselae [TaxId: 38323]}
Length = 118
Score = 24.8 bits (54), Expect = 7.7
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 5/48 (10%)
Query: 42 LGTGSQQTRDVPELLDSLKRASIKQVCMD-----KFHSVFVSDDGRVW 84
+GTG + R EL L I M + +V +++D V
Sbjct: 64 IGTGVELLRLPEELRVLLWEKRISSDTMSTGAAVRTFNVLLAEDRAVA 111
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.398
Gapped
Lambda K H
0.267 0.0623 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 996,029
Number of extensions: 43221
Number of successful extensions: 147
Number of sequences better than 10.0: 1
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 20
Length of query: 278
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 194
Effective length of database: 1,254,276
Effective search space: 243329544
Effective search space used: 243329544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.0 bits)