BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5943
(133 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O75165|DJC13_HUMAN DnaJ homolog subfamily C member 13 OS=Homo sapiens GN=DNAJC13 PE=1
SV=5
Length = 2243
Score = 135 bits (341), Expect = 6e-32, Method: Composition-based stats.
Identities = 65/120 (54%), Positives = 87/120 (72%), Gaps = 5/120 (4%)
Query: 3 GINVLVDLLTLCHLHVSRATHVVQSNVLEAGSGPGLEDE-EKEWYYGTSEQSK-GPVTFH 60
GI +LVDLLTL HLHVSRAT +QSNV+EA P ++ E EKEWY+G +++ + GP FH
Sbjct: 935 GIRILVDLLTLAHLHVSRATVPLQSNVIEA--APDMKRESEKEWYFGNADKERSGPYGFH 992
Query: 61 QIKHLWSTGELNPKTKVWAHGMESWKSLHQVPQLKWTLVAKNSGGVMNETELGCLILSML 120
+++ LW+ G LN KT+ WA GM+ W+ L +PQLKW L+A V+NET+L LIL+ML
Sbjct: 993 EMQELWTKGMLNAKTRCWAQGMDGWRPLQSIPQLKWCLLASGQ-AVLNETDLATLILNML 1051
>sp|F4IVL6|GRV2_ARATH DnaJ homolog subfamily C GRV2 OS=Arabidopsis thaliana GN=GRV2 PE=1
SV=1
Length = 2554
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 40/121 (33%), Positives = 63/121 (52%), Gaps = 10/121 (8%)
Query: 3 GINVLVDLLTLCHLHVSRATHVVQSNVLEAGSGPGLEDEEKEWYY---GTSEQSKGPVTF 59
G + VDLLT+ H + R +QSN++ A + + KEW Y G +E GPV
Sbjct: 1130 GCVLAVDLLTVVHENSERTPIPLQSNLIAATA---FMEPPKEWMYIDKGGAEV--GPVEK 1184
Query: 60 HQIKHLWSTGELNPKTKVWAHGMESWKSLHQVPQLKWTLVAKNSGGVMNETELGCLILSM 119
I+ LWS +++ TK A GM WK L + +L+W + + V+ +++G LS+
Sbjct: 1185 DVIRSLWSKKDIDWTTKCRALGMSDWKKLRDIRELRWAVAVRVP--VLTPSQVGDAALSI 1242
Query: 120 L 120
L
Sbjct: 1243 L 1243
>sp|Q1RID2|Y801_RICBR Putative ankyrin repeat protein RBE_0801 OS=Rickettsia bellii
(strain RML369-C) GN=RBE_0801 PE=4 SV=1
Length = 775
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 77 VWAHGMESWKSLHQVPQLKWTLVAKNSGGVMNETELGCLILSMLTKVNLENK 128
++AHG + + H +PQL TL + N+ EL ILS +T+ ENK
Sbjct: 54 IYAHGSQYFSHEHSLPQLSLTLQSSNN-------ELVPSILSKITENTEENK 98
>sp|Q9SD34|C3H44_ARATH Zinc finger CCCH domain-containing protein 44 OS=Arabidopsis
thaliana GN=At3g51120 PE=2 SV=3
Length = 1292
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 23 HVVQSNVLEAGSGPGLEDEEKE-WYY-GTSEQSKGPVTFHQIKHLWSTGELNPKTKVW-A 79
H SN+ E G +DEE E W+Y + +++GP + Q++ S+G P ++W A
Sbjct: 700 HNNSSNIQETGK----DDEESEIWHYRDPTGKTQGPFSMVQLRRWKSSGHFPPYLRIWRA 755
Query: 80 H 80
H
Sbjct: 756 H 756
>sp|Q72TC0|ILVD_LEPIC Dihydroxy-acid dehydratase OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar copenhageni (strain Fiocruz
L1-130) GN=ilvD PE=3 SV=1
Length = 560
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 1 MVGINVLVDLLTLCHLHVSRATHVVQSNVLEAGSGPGLEDEEKEWYYGTSEQSKGPVTFH 60
M+GI +T C++H+++ V+ V EAG P + YGT S G + H
Sbjct: 39 MIGIASTWSEITPCNIHINKLAEKVKEGVREAGGVPQI--------YGTITVSDGIMMGH 90
Query: 61 QIKHL 65
+ H
Sbjct: 91 EGMHF 95
>sp|Q8F219|ILVD_LEPIN Dihydroxy-acid dehydratase OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar Lai (strain 56601) GN=ilvD
PE=3 SV=1
Length = 560
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 1 MVGINVLVDLLTLCHLHVSRATHVVQSNVLEAGSGPGLEDEEKEWYYGTSEQSKGPVTFH 60
M+GI +T C++H+++ V+ V EAG P + YGT S G + H
Sbjct: 39 MIGIASTWSEITPCNIHINKLAEKVKEGVREAGGVPQI--------YGTITVSDGIMMGH 90
Query: 61 QIKHL 65
+ H
Sbjct: 91 EGMHF 95
>sp|Q8K285|FCHO1_MOUSE FCH domain only protein 1 OS=Mus musculus GN=Fcho1 PE=1 SV=2
Length = 873
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 9 DLLTLCHLHVSRATHVVQSNVLEAGSGPGLEDEEKEWYYGTSEQSKGPVTFHQIKHLWST 68
D L LCHL ++R H + +VL G +E+ + + E+ G T ++ L
Sbjct: 79 DKLALCHLELTRKLHDLLKDVLRYG------EEQLKTHKKCKEEVLG--TVDAVQMLSGV 130
Query: 69 GELNPKTK 76
G+L PK++
Sbjct: 131 GQLLPKSR 138
>sp|P61698|SYA_BDEBA Alanine--tRNA ligase OS=Bdellovibrio bacteriovorus (strain ATCC
15356 / DSM 50701 / NCIB 9529 / HD100) GN=alaS PE=3 SV=1
Length = 907
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 60 HQIKHLWSTGELNPKTKVWAHGMESWKSLHQVPQLKWTLVAKNSGGVMNETELGCLILSM 119
H IKHL +TGE T A+ +ES K QV QL+ + K GG +N +L L+
Sbjct: 745 HYIKHLETTGE----TATLANRVESLKD--QVKQLEKEM-KKLQGGQVNVDDLAANALTF 797
Query: 120 LTKVNLENKNTLG 132
TK K L
Sbjct: 798 KTKAGASAKLVLA 810
>sp|Q9HPB9|RS8_HALSA 30S ribosomal protein S8 OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=rps8 PE=3 SV=2
Length = 130
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 69 GELNPKTKVWAHGMESWKSLHQVPQLKWTLVAKNSGGVMNETE 111
G +NP+ V A G E W+ + + +LV S G+M+ E
Sbjct: 73 GPVNPRYSVGADGFEQWEKRYLPARDYGSLVVTTSHGIMSHYE 115
>sp|B0R671|RS8_HALS3 30S ribosomal protein S8 OS=Halobacterium salinarum (strain ATCC
29341 / DSM 671 / R1) GN=rps8 PE=3 SV=1
Length = 130
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 69 GELNPKTKVWAHGMESWKSLHQVPQLKWTLVAKNSGGVMNETE 111
G +NP+ V A G E W+ + + +LV S G+M+ E
Sbjct: 73 GPVNPRYSVGADGFEQWEKRYLPARDYGSLVVTTSHGIMSHYE 115
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.131 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,672,679
Number of Sequences: 539616
Number of extensions: 2114183
Number of successful extensions: 3105
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 3096
Number of HSP's gapped (non-prelim): 15
length of query: 133
length of database: 191,569,459
effective HSP length: 99
effective length of query: 34
effective length of database: 138,147,475
effective search space: 4697014150
effective search space used: 4697014150
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)