Query psy5943
Match_columns 133
No_of_seqs 127 out of 429
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 22:27:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5943.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5943hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wh2_A Hypothetical protein AT 98.7 2.4E-08 8.4E-13 67.7 5.4 57 39-96 14-71 (78)
2 3k3v_A Protein SMY2; GYF domai 97.8 1.3E-05 4.5E-10 56.7 3.4 54 39-92 12-74 (100)
3 1syx_B CD2BP2, CD2 antigen cyt 96.7 0.0018 6E-08 44.5 4.3 52 41-92 24-81 (86)
4 1w32_A Endo-1,4-beta-xylanase 23.4 43 0.0015 27.0 2.4 58 53-130 55-119 (348)
5 3emz_A Xylanase, endo-1,4-beta 22.8 1.2E+02 0.0042 24.3 5.0 66 54-131 55-125 (331)
6 1v0l_A Endo-1,4-beta-xylanase 21.4 51 0.0017 26.2 2.4 60 53-130 55-119 (313)
7 3cui_A EXO-beta-1,4-glucanase; 20.9 60 0.0021 25.4 2.8 60 53-130 54-118 (315)
8 3u7b_A Endo-1,4-beta-xylanase; 20.8 82 0.0028 25.3 3.6 61 54-130 57-122 (327)
9 1n82_A Xylanase, intra-cellula 20.0 1.3E+02 0.0043 23.9 4.5 66 53-130 55-125 (331)
10 3ro8_A Endo-1,4-beta-xylanase; 19.8 1.2E+02 0.004 24.6 4.3 92 23-131 34-130 (341)
No 1
>1wh2_A Hypothetical protein AT5G08430; GYF domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} SCOP: d.76.1.1
Probab=98.68 E-value=2.4e-08 Score=67.69 Aligned_cols=57 Identities=18% Similarity=0.392 Sum_probs=49.3
Q ss_pred CCCCcceEEecC-CeeeCCCCHHHHHHHHHcCccCCCCeeecCCcccceecCCcchHHH
Q psy5943 39 EDEEKEWYYGTS-EQSKGPVTFHQIKHLWSTGELNPKTKVWAHGMESWKSLHQVPQLKW 96 (133)
Q Consensus 39 ~~~~~~Wyy~~~-g~q~GP~s~~eL~~l~~~G~I~~~TlVW~eGm~~W~p~~~v~eL~~ 96 (133)
..++..|||.+. |+.+|||+..+|++.+++|-.+.+.+||+.|-++|.++. +.+|-.
T Consensus 14 ~~~~~~W~Y~Dp~g~iQGPFs~~~M~~W~~~GyF~~~L~Vrr~~~~~~~~i~-L~dll~ 71 (78)
T 1wh2_A 14 DKEKLNWLYKDPQGLVQGPFSLTQLKAWSDAEYFTKQFRVWMTGESMESAVL-LTDVLR 71 (78)
T ss_dssp CSSSCCEEEECTTSCEEEEECHHHHHHHHTTTSSCSCCEEEETTSCTTSCEE-HHHHHH
T ss_pred CcccCeEEEECCCCCCcCCcCHHHHHHHHHcCCCCCCceEEEeCCCCcceeh-HHHHHH
Confidence 346789999987 799999999999999999999999999999999998866 554433
No 2
>3k3v_A Protein SMY2; GYF domain, poly-proline binding, domain SWAP, ragnya, phosphoprotein, protein binding; 1.80A {Saccharomyces cerevisiae} PDB: 3fma_A
Probab=97.80 E-value=1.3e-05 Score=56.65 Aligned_cols=54 Identities=19% Similarity=0.335 Sum_probs=44.8
Q ss_pred CCCCcceEEecC-CeeeCCCCHHHHHHHHHcCccCCCCeeecCCc--------ccceecCCcc
Q psy5943 39 EDEEKEWYYGTS-EQSKGPVTFHQIKHLWSTGELNPKTKVWAHGM--------ESWKSLHQVP 92 (133)
Q Consensus 39 ~~~~~~Wyy~~~-g~q~GP~s~~eL~~l~~~G~I~~~TlVW~eGm--------~~W~p~~~v~ 92 (133)
...+..|||.+. |+.+|||+-++|++.+++|-.+.+-.||+.+- +.|.+++++-
T Consensus 12 ~~~e~~W~Y~Dp~G~vQGPFs~~~M~~W~~~GYF~~~L~VrR~~~~~~p~g~d~~F~~Lgel~ 74 (100)
T 3k3v_A 12 VSVESSWRYIDTQGQIHGPFTTQMMSQWYIGGYFASTLQISRLGSTPETLGINDIFITLGELM 74 (100)
T ss_dssp ---CCEEEEECTTSCEEEEEEHHHHHHHHHTTCCCTTCEEEECCSSCCSSSCBTCCEEHHHHH
T ss_pred ccccceEEEECCCCCCcCCcCHHHHHHHHHcCCCCCCceEEEcCCCCCccCCCCceeeHHHHH
Confidence 446889999986 69999999999999999999999999999753 3788877663
No 3
>1syx_B CD2BP2, CD2 antigen cytoplasmic tail-binding protein 2, CD; GYF-domain, thioredoxin-like, spliceosomal proteins, transla immune system complex; 2.35A {Homo sapiens} SCOP: d.76.1.1 PDB: 1gyf_A 1l2z_A
Probab=96.72 E-value=0.0018 Score=44.52 Aligned_cols=52 Identities=17% Similarity=0.215 Sum_probs=45.3
Q ss_pred CCcceEEe---cC-CeeeCCCCHHHHHHHHHcCccCCCCeeecCC-c-ccceecCCcc
Q psy5943 41 EEKEWYYG---TS-EQSKGPVTFHQIKHLWSTGELNPKTKVWAHG-M-ESWKSLHQVP 92 (133)
Q Consensus 41 ~~~~Wyy~---~~-g~q~GP~s~~eL~~l~~~G~I~~~TlVW~eG-m-~~W~p~~~v~ 92 (133)
.+..|.|. +. ++.+||||-.+|+...++|-.+.+-+|++.| - .+|.++..|.
T Consensus 24 ~~~~WeYKW~~~~~~~i~GPfs~~eM~~W~~~GYF~~~v~vRrvg~~~~~Fy~~~rId 81 (86)
T 1syx_B 24 VDVMWEYKWENTGDAELYGPFTSAQMQTWVSEGYFPDGVYCRKLDPPGGQFYNSKRID 81 (86)
T ss_dssp -CCEEEEESSSSSSSCCEEEEEHHHHHHHHHTTSCTTCCEEEESSSTTCCCEEGGGCC
T ss_pred ccceEEEEecCCCCCcccCCcCHHHHHHHHHCCCcCCCeEEEEecCCCCceEEeeeee
Confidence 45899998 33 6889999999999999999999999999999 4 5999988874
No 4
>1w32_A Endo-1,4-beta-xylanase A precursor; mutant, calcium ION, thermostable, glycosyle hydrolase, family 10, error prone PCR, hydrolase; 1.2A {Cellvibrio japonicus} SCOP: c.1.8.3 PDB: 1w2p_A 1w2v_A 1w3h_A 1clx_A 1e5n_A* 1xys_A
Probab=23.39 E-value=43 Score=27.03 Aligned_cols=58 Identities=12% Similarity=0.205 Sum_probs=37.4
Q ss_pred eeCCCCHHHHH---HHHHcCc--cCCCCeeecC--CcccceecCCcchHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHH
Q psy5943 53 SKGPVTFHQIK---HLWSTGE--LNPKTKVWAH--GMESWKSLHQVPQLKWTLVAKNSGGVMNETELGCLILSMLTKVNL 125 (133)
Q Consensus 53 q~GP~s~~eL~---~l~~~G~--I~~~TlVW~e--Gm~~W~p~~~v~eL~~~l~~~~pPP~l~~~~~~~~~L~~L~~~~~ 125 (133)
+.| |.++.+. ++.++.. +...|+||.. ..++|..-. . ..+-..+.+.+.++++
T Consensus 55 ~~G-~~f~~~D~~v~~a~~~gi~v~ghtl~W~~~~q~P~W~~~~------------~-------~~~~~~~~~~i~~v~~ 114 (348)
T 1w32_A 55 GSN-FSFTNSDRLVSWAAQNGQTVHGHALVWHPSYQLPNWASDS------------N-------ANFRQDFARHIDTVAA 114 (348)
T ss_dssp TTE-ECCHHHHHHHHHHHHTTCEEEEEEEECCCGGGCCTTCSTT------------C-------TTHHHHHHHHHHHHHH
T ss_pred CCC-CCchHHHHHHHHHHHCCCEEEEEeeecCccccCchhhhcC------------C-------HHHHHHHHHHHHHHHH
Confidence 456 7655444 4444433 4668999998 788887511 0 1256666788888999
Q ss_pred hhhhh
Q psy5943 126 ENKNT 130 (133)
Q Consensus 126 ~~~~~ 130 (133)
+|+.+
T Consensus 115 rY~g~ 119 (348)
T 1w32_A 115 HFAGQ 119 (348)
T ss_dssp HTTTT
T ss_pred HhCCc
Confidence 98854
No 5
>3emz_A Xylanase, endo-1,4-beta-xylanase; (alpha/beta)8 barrel, GH10 enzyme complex, hydrolase; HET: HXH; 2.08A {Bacillus SP} SCOP: c.1.8.3 PDB: 3emq_A* 3emc_A*
Probab=22.75 E-value=1.2e+02 Score=24.28 Aligned_cols=66 Identities=17% Similarity=0.250 Sum_probs=41.9
Q ss_pred eCCCCH---HHHHHHHHcCc--cCCCCeeecCCcccceecCCcchHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHHhhh
Q psy5943 54 KGPVTF---HQIKHLWSTGE--LNPKTKVWAHGMESWKSLHQVPQLKWTLVAKNSGGVMNETELGCLILSMLTKVNLENK 128 (133)
Q Consensus 54 ~GP~s~---~eL~~l~~~G~--I~~~TlVW~eGm~~W~p~~~v~eL~~~l~~~~pPP~l~~~~~~~~~L~~L~~~~~~~~ 128 (133)
.|=|++ +++.++.++.. +...|+||+...++|..... . ...++..++...+.+-+.+++++|+
T Consensus 55 ~G~~~f~~~D~~v~~a~~~gi~vrgHtLvWh~q~P~W~~~~~----------~--g~~~~~~~l~~~~~~~I~~v~~rYk 122 (331)
T 3emz_A 55 EHEYTFEAADEIVDFAVARGIGVRGHTLVWHNQTPAWMFEDA----------S--GGTASREMMLSRLKQHIDTVVGRYK 122 (331)
T ss_dssp TTBCCCHHHHHHHHHHHTTTCEEEECCSBCSSSCCGGGGBCT----------T--SSBCCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCccChhHHHHHHHHHHHCCCEEeeeeeeccccCcHhHhccc----------c--CCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 344554 44555555544 35579999999999974310 0 1234555666777788888999988
Q ss_pred hhc
Q psy5943 129 NTL 131 (133)
Q Consensus 129 ~~~ 131 (133)
.++
T Consensus 123 g~i 125 (331)
T 3emz_A 123 DQI 125 (331)
T ss_dssp TTC
T ss_pred CCc
Confidence 653
No 6
>1v0l_A Endo-1,4-beta-xylanase A; glycoside hydrolase family 10, xylan degradation, isofagomine, hydrolase; 0.98A {Streptomyces lividans} SCOP: c.1.8.3 PDB: 1e0x_A 1e0w_A* 1od8_A 1v0k_A 1v0m_A 1v0n_A 1e0v_A* 1xas_A 2g3i_A 2g3j_A* 2g4f_A 1v6y_A
Probab=21.38 E-value=51 Score=26.16 Aligned_cols=60 Identities=13% Similarity=0.284 Sum_probs=38.3
Q ss_pred eeCCCCHHHHHHH---HHcCc--cCCCCeeecCCcccceecCCcchHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHHhh
Q psy5943 53 SKGPVTFHQIKHL---WSTGE--LNPKTKVWAHGMESWKSLHQVPQLKWTLVAKNSGGVMNETELGCLILSMLTKVNLEN 127 (133)
Q Consensus 53 q~GP~s~~eL~~l---~~~G~--I~~~TlVW~eGm~~W~p~~~v~eL~~~l~~~~pPP~l~~~~~~~~~L~~L~~~~~~~ 127 (133)
+.|-|+++.+.++ .++.. +...|+||+...++|..- ++..++-..+.+.+.+++++|
T Consensus 55 ~~g~~~f~~~D~~v~~a~~~gi~v~ghtlvW~~q~P~W~~~------------------~~~~~~~~~~~~~i~~v~~ry 116 (313)
T 1v0l_A 55 QRGQFNFSSADRVYNWAVQNGKQVRGHTLAWHSQQPGWMQS------------------LSGSALRQAMIDHINGVMAHY 116 (313)
T ss_dssp BTTBCCCHHHHHHHHHHHHTTCEEEEEEEECSSSCCHHHHT------------------CCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCccCchHHHHHHHHHHHCCCEEEEEeecCcCcCchhhhc------------------CCHHHHHHHHHHHHHHHHHHc
Confidence 4566666555444 33333 466799999878888632 133455556677888888888
Q ss_pred hhh
Q psy5943 128 KNT 130 (133)
Q Consensus 128 ~~~ 130 (133)
+.+
T Consensus 117 ~g~ 119 (313)
T 1v0l_A 117 KGK 119 (313)
T ss_dssp TTT
T ss_pred CCc
Confidence 754
No 7
>3cui_A EXO-beta-1,4-glucanase; CEX, xylanase, isofagomine inhibitor, TIM barrel, cellulose degradation, glycosidase, hydrolase; HET: X4S; 1.50A {Cellulomonas fimi} PDB: 3cug_A* 3cuh_A* 3cuf_A* 3cuj_A* 1fh9_A* 1fh7_A 1fh8_A 1exp_A* 1fhd_A* 1j01_A* 2exo_A 2xyl_A 2his_A*
Probab=20.89 E-value=60 Score=25.38 Aligned_cols=60 Identities=22% Similarity=0.367 Sum_probs=37.8
Q ss_pred eeCCCCHHHHHHHH---Hc-C-ccCCCCeeecCCcccceecCCcchHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHHhh
Q psy5943 53 SKGPVTFHQIKHLW---ST-G-ELNPKTKVWAHGMESWKSLHQVPQLKWTLVAKNSGGVMNETELGCLILSMLTKVNLEN 127 (133)
Q Consensus 53 q~GP~s~~eL~~l~---~~-G-~I~~~TlVW~eGm~~W~p~~~v~eL~~~l~~~~pPP~l~~~~~~~~~L~~L~~~~~~~ 127 (133)
+.|-|++..+.+++ ++ | .+...|+||....+.|..- ++..++...+.+.+.+++++|
T Consensus 54 ~~g~~~~~~~D~~~~~a~~~gi~v~ghtl~W~~~~P~W~~~------------------~~~~~~~~~~~~~i~~v~~ry 115 (315)
T 3cui_A 54 SQNSFSFGAGDRVASYAADTGKELYGHTLVWHSQLPDWAKN------------------LNGSAFESAMVNHVTKVADHF 115 (315)
T ss_dssp BTTBCCCHHHHHHHHHHHHHTCEEEEEEEEESSSCCHHHHT------------------CCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCChHHHHHHHHHHHHCCCEEEEEeeecCCCCCHHHhc------------------CCHHHHHHHHHHHHHHHHHHc
Confidence 44666655544443 32 2 3456799999888888731 133455566677788888888
Q ss_pred hhh
Q psy5943 128 KNT 130 (133)
Q Consensus 128 ~~~ 130 (133)
+.+
T Consensus 116 ~g~ 118 (315)
T 3cui_A 116 EGK 118 (315)
T ss_dssp TTT
T ss_pred CCc
Confidence 764
No 8
>3u7b_A Endo-1,4-beta-xylanase; TIM barrel, hydrolase; HET: NAG BMA MAN; 1.94A {Fusarium oxysporum}
Probab=20.76 E-value=82 Score=25.27 Aligned_cols=61 Identities=16% Similarity=0.263 Sum_probs=38.5
Q ss_pred eCCCCH---HHHHHHHHcCcc--CCCCeeecCCcccceecCCcchHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHHhhh
Q psy5943 54 KGPVTF---HQIKHLWSTGEL--NPKTKVWAHGMESWKSLHQVPQLKWTLVAKNSGGVMNETELGCLILSMLTKVNLENK 128 (133)
Q Consensus 54 ~GP~s~---~eL~~l~~~G~I--~~~TlVW~eGm~~W~p~~~v~eL~~~l~~~~pPP~l~~~~~~~~~L~~L~~~~~~~~ 128 (133)
+|=|++ +.+.++.++..| ...|+||+...++|..-.. .+..++...+.+-+..++++|+
T Consensus 57 ~G~~~f~~~D~~v~~a~~~gi~vrGHtLvWh~q~P~W~~~~~----------------~~~~~l~~~~~~~I~~v~~rY~ 120 (327)
T 3u7b_A 57 RGQFNWGPADQHAAAATSRGYELRCHTLVWHSQLPSWVANGN----------------WNNQTLQAVMRDHINAVMGRYR 120 (327)
T ss_dssp TTBCCCHHHHHHHHHHHTTTCEEEEEEEEESTTCCHHHHTCC----------------CCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCccChHHHHHHHHHHHHCCCEEEEeeeecCCcCcHHHhcCC----------------CCHHHHHHHHHHHHHHHHHHhC
Confidence 455555 455555555544 4469999998899974321 1334455555777788888887
Q ss_pred hh
Q psy5943 129 NT 130 (133)
Q Consensus 129 ~~ 130 (133)
.+
T Consensus 121 g~ 122 (327)
T 3u7b_A 121 GK 122 (327)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 9
>1n82_A Xylanase, intra-cellular xylanase; hydrolase; 1.45A {Geobacillus stearothermophilus} SCOP: c.1.8.3 PDB: 3mua_A* 2q8x_A* 3msd_A* 3msg_A* 3mui_A* 3ms8_A
Probab=19.99 E-value=1.3e+02 Score=23.85 Aligned_cols=66 Identities=17% Similarity=0.276 Sum_probs=42.5
Q ss_pred eeCCCCHHHHHHH---HHcCc--cCCCCeeecCCcccceecCCcchHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHHhh
Q psy5943 53 SKGPVTFHQIKHL---WSTGE--LNPKTKVWAHGMESWKSLHQVPQLKWTLVAKNSGGVMNETELGCLILSMLTKVNLEN 127 (133)
Q Consensus 53 q~GP~s~~eL~~l---~~~G~--I~~~TlVW~eGm~~W~p~~~v~eL~~~l~~~~pPP~l~~~~~~~~~L~~L~~~~~~~ 127 (133)
+.|-|+++.+.++ .++-. +...|+||....++|..-. .. ...++...+-..+.+.+.+++++|
T Consensus 55 ~~g~~~f~~~D~~v~~a~~~gi~v~ghtlvW~~q~P~W~~~~----------~~--g~~~~~~~~~~~~~~~i~~v~~rY 122 (331)
T 1n82_A 55 EEGKFTFQEADRIVDFACSHRMAVRGHTLVWHNQTPDWVFQD----------GQ--GHFVSRDVLLERMKCHISTVVRRY 122 (331)
T ss_dssp BTTBCCCHHHHHHHHHHHHTTCEEEEEEEEESSSCCGGGGBC----------SS--SSBCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccChHHHHHHHHHHHHCCCEEEEEeeecCCCCChhhccC----------CC--CCCCCHHHHHHHHHHHHHHHHHHh
Confidence 4566665555444 33333 4567999999888998531 01 123455567777788888899998
Q ss_pred hhh
Q psy5943 128 KNT 130 (133)
Q Consensus 128 ~~~ 130 (133)
+.+
T Consensus 123 ~g~ 125 (331)
T 1n82_A 123 KGK 125 (331)
T ss_dssp TTT
T ss_pred cCC
Confidence 764
No 10
>3ro8_A Endo-1,4-beta-xylanase; glycosyl hydrolase family 10, GH10, (beta/alpha)8 fold, XYLA hydrolase; 1.34A {Paenibacillus SP} PDB: 3rdk_A 4e4p_A
Probab=19.79 E-value=1.2e+02 Score=24.57 Aligned_cols=92 Identities=15% Similarity=0.152 Sum_probs=53.7
Q ss_pred cccccceeecCCCCCCCCCCcceEEecCCeeeCCCCHHH---HHHHHHcC--ccCCCCeeecCCcccceecCCcchHHHH
Q psy5943 23 HVVQSNVLEAGSGPGLEDEEKEWYYGTSEQSKGPVTFHQ---IKHLWSTG--ELNPKTKVWAHGMESWKSLHQVPQLKWT 97 (133)
Q Consensus 23 ~~~~~n~i~~~~~~~~~~~~~~Wyy~~~g~q~GP~s~~e---L~~l~~~G--~I~~~TlVW~eGm~~W~p~~~v~eL~~~ 97 (133)
+..+=|.+++.- +-.|..... +.|=|+++. +.++.++. .+...||||+...++|..-. .
T Consensus 34 ~~~~Fn~it~EN-------~mKw~~~ep--~~G~~~f~~aD~~v~~a~~ngi~vrGHtLvWh~q~P~W~~~~--~----- 97 (341)
T 3ro8_A 34 LKMHHDVVTAGN-------AMKPDALQP--TKGNFTFTAADAMIDKVLAEGMKMHGHVLVWHQQSPAWLNTK--K----- 97 (341)
T ss_dssp HHHHCSEEEESS-------TTSHHHHCS--BTTBCCCHHHHHHHHHHHHTTCEEEEEEEECSSSCCGGGTEE--E-----
T ss_pred HHHhCCEEEECc-------ccchhHhcC--CCCccchHHHHHHHHHHHhCCCEEEeccccCcccCCHHHhcc--C-----
Confidence 334556666542 234444332 345566544 44444433 35778999999999997531 0
Q ss_pred HhhcCCCCCCCcchHHHHHHHHHHHHHHhhhhhc
Q psy5943 98 LVAKNSGGVMNETELGCLILSMLTKVNLENKNTL 131 (133)
Q Consensus 98 l~~~~pPP~l~~~~~~~~~L~~L~~~~~~~~~~~ 131 (133)
...+.+..++..++...+.+-+..++++|+.++
T Consensus 98 -d~~g~~~~~s~~~l~~~~~~hI~~vv~rYkg~i 130 (341)
T 3ro8_A 98 -DDNNNTVPLGRDEALDNLRTHIQTVMKHFGNKV 130 (341)
T ss_dssp -CTTSCEEECCHHHHHHHHHHHHHHHHHHHGGGS
T ss_pred -ccccccCCCCHHHHHHHHHHHHHHHHHHcCCcc
Confidence 011111235666777777788888999998654
Done!