RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy5943
         (133 letters)



>gnl|CDD|206405 pfam14237, DUF4339, Domain of unknown function (DUF4339).  This
          domain is found in bacteria, archaea and eukaryotes,
          and is approximately 50 amino acids in length. There
          are two completely conserved residues (G and W) that
          may be functionally important.
          Length = 45

 Score = 53.4 bits (129), Expect = 7e-11
 Identities = 16/45 (35%), Positives = 27/45 (60%)

Query: 44 EWYYGTSEQSKGPVTFHQIKHLWSTGELNPKTKVWAHGMESWKSL 88
          +WYY  + Q  GP +  +++ L ++G++ P T VW  GM  W+ L
Sbjct: 1  QWYYARNGQQAGPFSLEELRQLIASGQITPDTLVWKQGMSDWQPL 45


>gnl|CDD|177837 PLN02182, PLN02182, cytidine deaminase.
          Length = 339

 Score = 25.8 bits (56), Expect = 9.4
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 6/33 (18%)

Query: 31  EAGSGPGLEDEEKEWYYG------TSEQSKGPV 57
           E+ SG  L D + +WY G       S  S GPV
Sbjct: 221 ESPSGVALLDNDGKWYRGWYIESVASNPSFGPV 253


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.314    0.131    0.403 

Gapped
Lambda     K      H
   0.267   0.0775    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,362,137
Number of extensions: 512439
Number of successful extensions: 222
Number of sequences better than 10.0: 1
Number of HSP's gapped: 222
Number of HSP's successfully gapped: 4
Length of query: 133
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 47
Effective length of database: 7,123,158
Effective search space: 334788426
Effective search space used: 334788426
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.1 bits)