RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy5943
         (133 letters)



>1wh2_A Hypothetical protein AT5G08430; GYF domain, structural genomics,
          riken structural genomics/proteomics initiative, RSGI,
          unknown function; NMR {Arabidopsis thaliana} SCOP:
          d.76.1.1
          Length = 78

 Score = 31.5 bits (71), Expect = 0.019
 Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 1/51 (1%)

Query: 32 AGSGPGLEDEEKEWYY-GTSEQSKGPVTFHQIKHLWSTGELNPKTKVWAHG 81
                 + E+  W Y       +GP +  Q+K          + +VW  G
Sbjct: 7  GVRVLSYDKEKLNWLYKDPQGLVQGPFSLTQLKAWSDAEYFTKQFRVWMTG 57


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 29.1 bits (64), Expect = 0.53
 Identities = 19/108 (17%), Positives = 35/108 (32%), Gaps = 43/108 (39%)

Query: 41  EEKEWYYGTSEQ-SKGPVT----FHQIK-HLWSTGELNPKTKVWAHGMESWKSLHQVPQL 94
           E+++  Y  ++  +K  V+    + +++  L    EL P   V   G+           L
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL---ELRPAKNVLIDGV-----------L 159

Query: 95  ---KWTLVA----------KNSGGV--MNETELGC-----LILSMLTK 122
              K  +            K    +  +N   L        +L ML K
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLN---LKNCNSPETVLEMLQK 204



 Score = 27.9 bits (61), Expect = 1.1
 Identities = 9/51 (17%), Positives = 21/51 (41%), Gaps = 11/51 (21%)

Query: 4   INVLVDLLTLC--HLHVSRATHVVQSNVLEAGSGPGLEDEEKEWYYGTSEQ 52
           +N ++D L     +L  S+ T +++           L  E++  +    +Q
Sbjct: 545 VNAILDFLPKIEENLICSKYTDLLRI---------ALMAEDEAIFEEAHKQ 586


>3k3v_A Protein SMY2; GYF domain, poly-proline binding, domain SWAP,
          ragnya, phosphoprotein, protein binding; 1.80A
          {Saccharomyces cerevisiae} PDB: 3fma_A
          Length = 100

 Score = 27.8 bits (61), Expect = 0.63
 Identities = 10/48 (20%), Positives = 14/48 (29%), Gaps = 1/48 (2%)

Query: 32 AGSGPGLEDEEKEWYY-GTSEQSKGPVTFHQIKHLWSTGELNPKTKVW 78
              P     E  W Y  T  Q  GP T   +   +  G      ++ 
Sbjct: 5  MSQLPAPVSVESSWRYIDTQGQIHGPFTTQMMSQWYIGGYFASTLQIS 52


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 28.1 bits (62), Expect = 0.98
 Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 22/55 (40%)

Query: 7   LVDLLTLCHLH-----VSRATHVVQSNVLEAGSGPG-------LEDEEKEWYYGT 49
           +VD +    +        +ATH++         GPG       L    K+   GT
Sbjct: 479 IVDCIIRLPVKWETTTQFKATHIL---DF----GPGGASGLGVLTHRNKD---GT 523


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.314    0.131    0.403 

Gapped
Lambda     K      H
   0.267   0.0503    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,934,063
Number of extensions: 96008
Number of successful extensions: 108
Number of sequences better than 10.0: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 6
Length of query: 133
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 50
Effective length of database: 4,384,350
Effective search space: 219217500
Effective search space used: 219217500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.3 bits)