BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5944
(309 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|157108533|ref|XP_001650271.1| 50S ribosomal protein L4 [Aedes aegypti]
gi|108884031|gb|EAT48256.1| AAEL000701-PA [Aedes aegypti]
Length = 279
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 121/262 (46%), Positives = 156/262 (59%), Gaps = 28/262 (10%)
Query: 48 NAFLQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTK 107
N F PR W+ENLDT EE+ G L ++FG PR+D++ NIEWQ+KY++V F H+K
Sbjct: 43 NPFRAPRSVWIENLDTIEEQKLGIQQLSSEVFGAAPRIDIVHQNIEWQRKYRFVSFSHSK 102
Query: 108 VTNEVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEE 167
NEV GRKPWPQKGL G R L+ G G
Sbjct: 103 TRNEVRGGGRKPWPQKGLGRARHGSIRSPLWRGGGIAHGPR------------------- 143
Query: 168 EITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEE 227
+P +LP V+GL STLSIKL QDDLHIV+DL +P +DP+YL +LV+E
Sbjct: 144 ------SPTTHFYMLPFFSR-VLGLVSTLSIKLAQDDLHIVRDLDIPTEDPQYLRDLVQE 196
Query: 228 RCWGPSVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIE 285
R WGPSVLF+D++D M RNIS D+I H N+MP YG N +MLKHDTLV+T A ++IE
Sbjct: 197 RAWGPSVLFIDSSDIMPRNISAGADEIDHINLMPVYGLNVYSMLKHDTLVLTKSAAEEIE 256
Query: 286 DKLLLALNRSDNERFTSRFVID 307
KL L+R+D ++F +D
Sbjct: 257 SKLSEHLHRTDARSLMTKFKVD 278
>gi|307170893|gb|EFN63004.1| 39S ribosomal protein L4, mitochondrial [Camponotus floridanus]
Length = 285
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 118/262 (45%), Positives = 154/262 (58%), Gaps = 28/262 (10%)
Query: 48 NAFLQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTK 107
N + +PRQ W+ENLDT EEK G + LHP I+ PR+D+I N+ WQK Y+WV + HTK
Sbjct: 48 NVYQKPRQVWLENLDTVEEKKLGLITLHPHIYAAAPRIDIIHQNVRWQKMYRWVCYAHTK 107
Query: 108 VTNEVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEE 167
EV GRKPWPQKG G R L+ G G
Sbjct: 108 TRAEVRGGGRKPWPQKGTGRARHGSIRSPLWRGGGIAHGPR------------------- 148
Query: 168 EITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEE 227
+P +LP V GLTSTLS+KL QDDLHIV +L +P +P Y+E L+E+
Sbjct: 149 ------SPTTHFYMLPFYTR-VAGLTSTLSVKLAQDDLHIVNELEIPTSEPSYIEQLIEK 201
Query: 228 RCWGPSVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIE 285
R WGPSVLFVD+ D M NI++ TD+IKH N+MP YG N +MLKH+TLV+T A + IE
Sbjct: 202 RNWGPSVLFVDSYDIMPTNITLATDEIKHVNLMPVYGLNVYSMLKHNTLVLTEKAARLIE 261
Query: 286 DKLLLALNRSDNERFTSRFVID 307
+KLL L+R+D + + F ++
Sbjct: 262 EKLLYQLHRTDVKELSRPFKLN 283
>gi|332018616|gb|EGI59197.1| 39S ribosomal protein L4, mitochondrial [Acromyrmex echinatior]
Length = 286
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 118/262 (45%), Positives = 153/262 (58%), Gaps = 28/262 (10%)
Query: 48 NAFLQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTK 107
N + +PRQ W+ENL+T EEK G V LHP I+ PR+D+I NI WQ+ Y+WV + HTK
Sbjct: 49 NFYQKPRQVWLENLNTIEEKKLGLVTLHPHIYAAAPRIDIIHQNIRWQRMYRWVSYAHTK 108
Query: 108 VTNEVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEE 167
EV GRKPWPQKG G R L+ G G
Sbjct: 109 TRAEVRGGGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPR------------------- 149
Query: 168 EITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEE 227
+P +LP I GLT+TLS+KL QDDLHIV +L +P +P Y+E L+EE
Sbjct: 150 ------SPTPHFYMLPFYTRIA-GLTATLSVKLAQDDLHIVDELEIPTSEPSYVEQLIEE 202
Query: 228 RCWGPSVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIE 285
R WGPS+L VD+ D M NI++ TD+IKH NIMP YG N +MLKH+TLV+T A + IE
Sbjct: 203 RNWGPSILLVDSYDIMPTNITLATDKIKHVNIMPVYGLNVYSMLKHNTLVLTEKAARLIE 262
Query: 286 DKLLLALNRSDNERFTSRFVID 307
+KLL L+R+DN + F ++
Sbjct: 263 EKLLYHLHRADNNQLLRTFKLN 284
>gi|322796484|gb|EFZ18991.1| hypothetical protein SINV_11616 [Solenopsis invicta]
Length = 287
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 119/264 (45%), Positives = 155/264 (58%), Gaps = 29/264 (10%)
Query: 47 QNAFLQ-PRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDH 105
+++F Q PRQ W+ENL+T EEK G V LHP I+ PR+D++ N+ WQK Y+WV + H
Sbjct: 48 ESSFYQKPRQVWLENLNTIEEKKLGLVTLHPHIYATAPRIDIVHQNVRWQKMYRWVSYAH 107
Query: 106 TKVTNEVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEE 165
TK EV GRKPWPQKG G R L+ G G
Sbjct: 108 TKTRAEVRGGGRKPWPQKGTGRARHGSIRSPLWKGGGIAHGPR----------------- 150
Query: 166 EEEITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLV 225
+P +LP V GLTS LSIKL QDDLHI+ +L +P +P Y+E LV
Sbjct: 151 --------SPTPHFYMLPFYTR-VAGLTSMLSIKLAQDDLHIIDELEIPTSEPSYVEQLV 201
Query: 226 EERCWGPSVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQ 283
EER WGPSVLFVD+ D M NI++ TD+IKH N+MP YG N +MLKH+TLV+T A +
Sbjct: 202 EERNWGPSVLFVDSYDIMPPNITLATDKIKHVNLMPVYGLNVYSMLKHNTLVLTEKAARL 261
Query: 284 IEDKLLLALNRSDNERFTSRFVID 307
IE+KLL L+R+D+ + F ++
Sbjct: 262 IEEKLLYHLHRADSNKLCRPFRLN 285
>gi|307214236|gb|EFN89342.1| 39S ribosomal protein L4, mitochondrial [Harpegnathos saltator]
Length = 285
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 119/257 (46%), Positives = 148/257 (57%), Gaps = 28/257 (10%)
Query: 50 FLQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVT 109
+ + RQ W+ENLDT +EK GFV LHP IF PR+D+I N+ WQK Y+WV + HTK
Sbjct: 50 YQKSRQVWLENLDTIKEKKLGFVTLHPHIFAATPRIDIIHQNVRWQKMYRWVCYAHTKTR 109
Query: 110 NEVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEI 169
EV GRKPWPQKG G R L+ G G
Sbjct: 110 TEVRGGGRKPWPQKGTGRARHGSIRSPLWRGGGRAHGPR--------------------- 148
Query: 170 TATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERC 229
+P +LP V GLTS LS+KL QDDLHI+ +L +P + Y+E LVEER
Sbjct: 149 ----SPTPHFYMLPFFTR-VAGLTSMLSVKLAQDDLHIINNLEIPTSECSYIEQLVEERN 203
Query: 230 WGPSVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDK 287
WGPSVL VD+ D M +NI++ TD+IKH N+MP YG N +MLKH+TLV+T A + IE+K
Sbjct: 204 WGPSVLIVDSYDIMPKNITLATDEIKHINLMPVYGLNVYSMLKHNTLVLTEQAARLIEEK 263
Query: 288 LLLALNRSDNERFTSRF 304
LL LNRSD R F
Sbjct: 264 LLFQLNRSDFRRLMVPF 280
>gi|91094379|ref|XP_970941.1| PREDICTED: similar to mitochondrial 39S ribosomal protein L4
[Tribolium castaneum]
gi|270014913|gb|EFA11361.1| hypothetical protein TcasGA2_TC011518 [Tribolium castaneum]
Length = 274
Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 121/278 (43%), Positives = 161/278 (57%), Gaps = 28/278 (10%)
Query: 34 SNKSEILHETKEFQNAFLQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIE 93
++ S+I F + QPRQ W+EN DT EEK + LHP++F PR+D+I N+
Sbjct: 23 ASPSQIEPRQLAFPPKYQQPRQVWLENFDTIEEKKLAILELHPEVFAANPRVDIIHDNVR 82
Query: 94 WQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEE 153
WQ Y++V + HTK EV GRKPWPQKGL G R L+ G G
Sbjct: 83 WQSLYRYVSYAHTKSRFEVRGGGRKPWPQKGLGRARHGSIRSPLFRGGGV---------- 132
Query: 154 EEEEEEEEEEEEEEEITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVL 213
I +P +LP I GLT+TLSIKL QDDLH++ DL +
Sbjct: 133 ---------------IHGPKSPNPHFYMLPFYTRIH-GLTATLSIKLAQDDLHVITDLEI 176
Query: 214 PVDDPKYLENLVEERCWGPSVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKH 271
P DDP ++E LV+ R WGPSVLFVD +D M RNI+ TD +KH+N+MPAYG N +MLKH
Sbjct: 177 PTDDPNFVEELVKSRKWGPSVLFVDESDIMPRNITAATDSVKHFNLMPAYGLNVYSMLKH 236
Query: 272 DTLVITVDALKQIEDKLLLALNRSDNERFTSRFVIDTV 309
DTLV+T AL IE KLL L+++++ T ++ ++ V
Sbjct: 237 DTLVLTRAALDLIESKLLTHLHKNNSVPNTQKYKLNQV 274
>gi|380011885|ref|XP_003690024.1| PREDICTED: 39S ribosomal protein L4, mitochondrial-like [Apis
florea]
Length = 280
Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 121/264 (45%), Positives = 160/264 (60%), Gaps = 29/264 (10%)
Query: 47 QNAFLQ-PRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDH 105
+N F Q PR+ W+ENLDT + K G + LHPD++G PR+D+I N++WQK Y++V + H
Sbjct: 42 ENYFYQKPREVWLENLDTIQRKKLGLMILHPDVYGAAPRIDIIHQNVQWQKMYRFVSYAH 101
Query: 106 TKVTNEVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEE 165
TKV +EV G+KPW QKGL G R L+ G G
Sbjct: 102 TKVRSEVRGGGKKPWRQKGLGRARHGSIRSPLWRGGGI---------------------- 139
Query: 166 EEEITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLV 225
I +P +LP V GLTSTLSIKL QDDL+I+KDL +P ++P Y+E L+
Sbjct: 140 ---IHGPRSPTTHFYMLPFYSR-VNGLTSTLSIKLAQDDLYIIKDLEIPSNEPSYIEKLI 195
Query: 226 EERCWGPSVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQ 283
EER WGPSVLFVD D M NI+ TD IKH N+MP YG N +MLKHDTLV+T A +
Sbjct: 196 EERHWGPSVLFVDTDDIMPINITEATDTIKHINLMPVYGLNVYSMLKHDTLVLTERAARL 255
Query: 284 IEDKLLLALNRSDNERFTSRFVID 307
IEDK+L L+R D+ + ++F ++
Sbjct: 256 IEDKILYHLHRPDSRKIMAKFKLN 279
>gi|170032333|ref|XP_001844036.1| mitochondrial 39S ribosomal protein L4 [Culex quinquefasciatus]
gi|167872322|gb|EDS35705.1| mitochondrial 39S ribosomal protein L4 [Culex quinquefasciatus]
Length = 278
Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 116/257 (45%), Positives = 154/257 (59%), Gaps = 28/257 (10%)
Query: 53 PRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEV 112
PR W+ENLDT EE+ G L ++FG PR+D++ N+EWQ+KY++V F H K NEV
Sbjct: 47 PRAVWIENLDTVEERKLGIQELSNEVFGATPRIDIVHQNVEWQRKYRYVSFAHAKTRNEV 106
Query: 113 ERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITAT 172
GRKPWPQKGL + G R L+ G G
Sbjct: 107 RGGGRKPWPQKGLGKARHGSIRSPLWRGGGIAHGPR------------------------ 142
Query: 173 LNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGP 232
+P +LP + V+GL STLSIKL QDDLHIV L +P DDP++L +LV+ER WGP
Sbjct: 143 -SPTTHFYMLPFF-NRVLGLVSTLSIKLAQDDLHIVDSLDIPTDDPQFLRDLVQERAWGP 200
Query: 233 SVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLLL 290
SVLFVD++D M RNI+ T+ I H N+MP YG N +MLKH+TLV+T +A ++IE KL
Sbjct: 201 SVLFVDSSDLMPRNITAGTESIDHVNLMPVYGLNVYSMLKHNTLVLTREAAEEIEAKLSE 260
Query: 291 ALNRSDNERFTSRFVID 307
L+R+D ++F +D
Sbjct: 261 QLHRNDARSLMTKFKVD 277
>gi|328720672|ref|XP_001945994.2| PREDICTED: 39S ribosomal protein L4, mitochondrial-like
[Acyrthosiphon pisum]
Length = 282
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 114/262 (43%), Positives = 159/262 (60%), Gaps = 28/262 (10%)
Query: 48 NAFLQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTK 107
+ + RQAWV NLDT +E ++LHP +FG PR+D+I N+ WQKKYK+V + +TK
Sbjct: 44 GGYTELRQAWVSNLDTIKENPSTIIDLHPQVFGSRPRIDIIHENVVWQKKYKYVSYANTK 103
Query: 108 VTNEVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEE 167
VT EV + +KPWPQKG G RR L+ G
Sbjct: 104 VTAEVNMSSKKPWPQKGQGRARHGTRRSPLFRGGSVIHGPRSHTTH-------------- 149
Query: 168 EITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEE 227
+LP V GLTSTLS+KL+QDDLH+V +L +P DDP Y+ +LV+
Sbjct: 150 -----------FYMLPFYKR-VYGLTSTLSVKLIQDDLHVVNNLDIPTDDPGYINDLVDS 197
Query: 228 RCWGPSVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIE 285
R WGPSVLF+D+TD M +NIS+ +QIKH N+MP YG N +MLK++TLV+TV A+K+I+
Sbjct: 198 RLWGPSVLFIDDTDTMPKNISLALNQIKHMNLMPVYGLNVYSMLKYETLVLTVAAVKKIQ 257
Query: 286 DKLLLALNRSDNERFTSRFVID 307
++LL L+R D + T +F+++
Sbjct: 258 ERLLYQLHRPDGHQATRKFMLN 279
>gi|350403280|ref|XP_003486754.1| PREDICTED: 39S ribosomal protein L4, mitochondrial-like [Bombus
impatiens]
Length = 280
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 122/269 (45%), Positives = 157/269 (58%), Gaps = 29/269 (10%)
Query: 39 ILHETKEFQNAFLQ-PRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKK 97
I + E +N F Q PR+ W+ENLDT E + G V LHPDI+G PR+D+I NI WQ+
Sbjct: 33 ISKRSYEDENYFYQRPREVWLENLDTVERQKLGLVFLHPDIYGASPRIDIIHENIRWQRM 92
Query: 98 YKWVRFDHTKVTNEVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEE 157
Y++V + HTKV +EV G+KPWPQKG R L+ G G
Sbjct: 93 YRFVCYAHTKVRSEVRGGGKKPWPQKGTGRSRHSSIRSPLWRGGGV-------------- 138
Query: 158 EEEEEEEEEEEITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDD 217
+ +P +LP V GLTSTLS+KL QDDL+IVKDL +P +
Sbjct: 139 -----------VHGPRSPTTHFYMLPFYTR-VAGLTSTLSVKLAQDDLYIVKDLEIPSNK 186
Query: 218 PKYLENLVEERCWGPSVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLV 275
P Y+E L+EER WGPSVLFVD D M NIS TD IKH N+MP YG N +MLKH+TL+
Sbjct: 187 PSYIEQLIEERHWGPSVLFVDTDDIMPENISEATDTIKHVNLMPVYGLNVYSMLKHNTLI 246
Query: 276 ITVDALKQIEDKLLLALNRSDNERFTSRF 304
+T A + IEDK+L L+R D + ++F
Sbjct: 247 LTERAARLIEDKILHHLHRPDYHKLMAKF 275
>gi|328787688|ref|XP_001120958.2| PREDICTED: 39S ribosomal protein L4, mitochondrial [Apis mellifera]
Length = 280
Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 122/272 (44%), Positives = 163/272 (59%), Gaps = 29/272 (10%)
Query: 39 ILHETKEFQNAFLQ-PRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKK 97
I +T +N F Q PR+ W+ENLDT E K G + LHPD++G PR+D+I N++WQK
Sbjct: 34 ISKKTYSDENFFYQKPREVWLENLDTIERKKLGLMFLHPDVYGTAPRIDIIHQNVQWQKM 93
Query: 98 YKWVRFDHTKVTNEVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEE 157
Y++V + HTKV +EV G+KPW QKGL G R L+ G G
Sbjct: 94 YRFVSYAHTKVRSEVRGGGKKPWRQKGLGRARHGSIRSPLWRGGGV-------------- 139
Query: 158 EEEEEEEEEEEITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDD 217
I +P +LP + V GLTSTLS+KL QDDL+I+KDL +P ++
Sbjct: 140 -----------IHGPRSPTTHFYMLP-FYNRVNGLTSTLSVKLAQDDLYIIKDLEIPSNE 187
Query: 218 PKYLENLVEERCWGPSVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLV 275
Y+E L+EER WGPSVLFVD D M NI+ TD IKH N+MP YG N +MLKHDTLV
Sbjct: 188 SSYIEKLIEERHWGPSVLFVDTDDIMPINITEATDTIKHVNLMPVYGLNVYSMLKHDTLV 247
Query: 276 ITVDALKQIEDKLLLALNRSDNERFTSRFVID 307
+T A + IEDK+L L+R D+ + ++F ++
Sbjct: 248 LTERAARLIEDKILYHLHRPDSRKVMAKFKLN 279
>gi|195114622|ref|XP_002001866.1| GI14673 [Drosophila mojavensis]
gi|193912441|gb|EDW11308.1| GI14673 [Drosophila mojavensis]
Length = 911
Score = 220 bits (561), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 114/258 (44%), Positives = 153/258 (59%), Gaps = 28/258 (10%)
Query: 54 RQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVE 113
RQAW+EN+D E+ G + LHPD+F PR+DVI NIEWQ+KY++V HTK EV
Sbjct: 680 RQAWIENVDAVTERKVGLMELHPDVFAAQPRVDVIQENIEWQRKYRYVSMAHTKTRAEVR 739
Query: 114 RTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATL 173
GRKPWPQKG+ G R L+ G G I
Sbjct: 740 GGGRKPWPQKGMGRARHGSIRSPLFKGGGV-------------------------IHGPR 774
Query: 174 NPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPS 233
+P +LP V+GLTSTLS+KL QDDLHI++D+ +P D +++ +L++ER WGPS
Sbjct: 775 SPTTHFYMLPFYKR-VMGLTSTLSVKLAQDDLHIIEDVEIPTKDAQFIRDLIQERNWGPS 833
Query: 234 VLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLLLA 291
VL VD D NI TD I + N+MPAYG N +MLKHDTLV+TV+A+K +E++LL
Sbjct: 834 VLIVDKHDVFPENICYATDSIGYVNLMPAYGLNVYSMLKHDTLVLTVEAVKHLEERLLYQ 893
Query: 292 LNRSDNERFTSRFVIDTV 309
L+R+D ++F +D V
Sbjct: 894 LHRNDAASKQTKFKLDQV 911
>gi|383865973|ref|XP_003708446.1| PREDICTED: 39S ribosomal protein L4, mitochondrial-like [Megachile
rotundata]
Length = 282
Score = 220 bits (560), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 114/260 (43%), Positives = 152/260 (58%), Gaps = 28/260 (10%)
Query: 50 FLQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVT 109
+ +PR+ W+ENLDT E K G V LHPD+FG PR+D+I N++WQ+ Y+WV + +TK
Sbjct: 47 YQKPREVWIENLDTVERKKLGLVTLHPDVFGAAPRIDIIHQNVQWQRMYRWVCYANTKTR 106
Query: 110 NEVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEI 169
EV GRKPW QKG G R L+ G G
Sbjct: 107 AEVRGGGRKPWRQKGTGRARHGSIRSPLWRGGGVAHGPR--------------------- 145
Query: 170 TATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERC 229
+P +LP V GLT TLS+KL QDDL+I+ +L +P +D Y++ L+E R
Sbjct: 146 ----SPTPHFYMLPFFTR-VAGLTCTLSVKLAQDDLYIINELEIPTNDSAYIKELIEARH 200
Query: 230 WGPSVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDK 287
WGPSVLFVD+ D M NI+ TD+IKH N+MPAYG N +MLKHDTLV+T A + IEDK
Sbjct: 201 WGPSVLFVDSEDIMAPNITEATDEIKHVNLMPAYGLNVYSMLKHDTLVLTERAARLIEDK 260
Query: 288 LLLALNRSDNERFTSRFVID 307
+L L+R DN + +F ++
Sbjct: 261 ILYNLHRPDNRKLMQKFKLN 280
>gi|340728366|ref|XP_003402496.1| PREDICTED: 39S ribosomal protein L4, mitochondrial-like [Bombus
terrestris]
Length = 280
Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 122/273 (44%), Positives = 160/273 (58%), Gaps = 31/273 (11%)
Query: 39 ILHETKEFQNAFLQ-PRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKK 97
I + E +N F Q PR+ W+ENLDT E + G V LHPDI+ PR+D+I NI WQ+
Sbjct: 33 ISKRSYEDENYFYQRPREVWLENLDTIERQKLGLVFLHPDIYAASPRIDIIHANIRWQRM 92
Query: 98 YKWVRFDHTKVTNEVERTGRKPWPQKGL-IERLDGKRRPRLYTGKGEEKEEEEEEEEEEE 156
Y++V + HTKV +EV G+KPW QKGL + R R P L+ G G
Sbjct: 93 YRYVCYAHTKVRSEVRGGGKKPWRQKGLGLSRHSSIRSP-LWRGGGV------------- 138
Query: 157 EEEEEEEEEEEEITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVD 216
+ +P +LP V GLTSTLS+KL QDDL+IV DL +P +
Sbjct: 139 ------------VHGPRSPTTHFYMLPFYTR-VAGLTSTLSVKLAQDDLYIVNDLEIPSN 185
Query: 217 DPKYLENLVEERCWGPSVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTL 274
P Y+E L+EER WGPSVLFVD D M NIS TD IKH N+MP YG N +MLKH+TL
Sbjct: 186 KPSYIEQLIEERHWGPSVLFVDTDDIMPENISEATDTIKHVNLMPVYGLNVYSMLKHNTL 245
Query: 275 VITVDALKQIEDKLLLALNRSDNERFTSRFVID 307
++T A + IEDK+L L+R D + ++F ++
Sbjct: 246 ILTERAARLIEDKILYHLHRPDYHKLMAKFKLN 278
>gi|87248365|gb|ABD36235.1| ribosomal protein L4 [Bombyx mori]
Length = 284
Score = 217 bits (552), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 119/281 (42%), Positives = 157/281 (55%), Gaps = 32/281 (11%)
Query: 33 TSNKS-EILHETKEFQNAFLQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMN 91
T+NK+ IL + EF + +P + W+ENLD+ EEK G + LHP ++ P +D+I N
Sbjct: 32 TANKTINILKKEWEFPPLYTKPSEVWIENLDSVEEKKLGLIELHPMVYAAPPSIDMIHSN 91
Query: 92 IEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEE 151
+ WQ KY WV + HTK + EV G+KPWPQKGL G L+ G G
Sbjct: 92 VMWQSKYSWVSWAHTKTSAEVRGGGKKPWPQKGLGRASHGSMSSPLFRGGGVAHGPR--- 148
Query: 152 EEEEEEEEEEEEEEEEEITATLNPCGLCRILPVMVHIVV-GLTSTLSIKLMQDDLHIVKD 210
G + H+ + GLT+TLS KL QDDLHIVKD
Sbjct: 149 ------------------------SGKSHFFMLPFHLSLHGLTTTLSAKLAQDDLHIVKD 184
Query: 211 LVLPVDDPKYLENLVEERCWGPSVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NM 268
L LP D+ +YL +L+E WGPSVL +D+TDY NI+ TD + H NIMP YG N +M
Sbjct: 185 LELPTDESQYLVDLIENSNWGPSVLIIDDTDYAPSNITAATDNLLHVNIMPVYGLNVYSM 244
Query: 269 LKHDTLVITVDALKQIEDKLLLALNRSDNERFTSRFVIDTV 309
LKHDTLV+T A ++IE+KLL L+ SDN +F +D V
Sbjct: 245 LKHDTLVLTQAAAEKIEEKLLYHLH-SDNSESMKKFKMDQV 284
>gi|195386106|ref|XP_002051745.1| GJ17161 [Drosophila virilis]
gi|194148202|gb|EDW63900.1| GJ17161 [Drosophila virilis]
Length = 298
Score = 217 bits (552), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 109/258 (42%), Positives = 154/258 (59%), Gaps = 28/258 (10%)
Query: 54 RQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVE 113
RQAW+EN+D E+ G + LHPD+F PR+D+I NIEWQ+KY++V HTK EV
Sbjct: 67 RQAWIENVDAVAERKVGLMELHPDVFAAQPRVDIIQENIEWQRKYRYVSMAHTKTRAEVR 126
Query: 114 RTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATL 173
GRKPWPQKG+ G R L+ G G +
Sbjct: 127 GGGRKPWPQKGMGRARHGSIRSPLFKGGGV-------------------------VHGPR 161
Query: 174 NPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPS 233
+P +LP V+GLTSTLS+KL QDDLHI++++ +P D +++++L++ER WGPS
Sbjct: 162 SPTSHFYMLPFYKR-VLGLTSTLSVKLAQDDLHIIENVEIPTRDAQFIKDLIQERNWGPS 220
Query: 234 VLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLLLA 291
VL +D D NI TD + + N+MPA+G N +MLKHDTLV+TVDA+K +E++LL
Sbjct: 221 VLIIDKQDIFPENICYATDTLGYVNLMPAFGLNVYSMLKHDTLVLTVDAVKHLEERLLFQ 280
Query: 292 LNRSDNERFTSRFVIDTV 309
L+R+D ++F +D V
Sbjct: 281 LHRNDASSKGAKFKLDQV 298
>gi|194759834|ref|XP_001962152.1| GF15323 [Drosophila ananassae]
gi|190615849|gb|EDV31373.1| GF15323 [Drosophila ananassae]
Length = 296
Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 110/259 (42%), Positives = 151/259 (58%), Gaps = 28/259 (10%)
Query: 53 PRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEV 112
PRQAW+EN D +E+ G + LHPD+F PR+D+I N+EWQ+KY++V F TK EV
Sbjct: 64 PRQAWIENTDAVQERKVGLIELHPDVFAAQPRVDIIQENVEWQRKYRYVSFAQTKTRAEV 123
Query: 113 ERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITAT 172
GRKPWPQKG+ G R L+ G G +
Sbjct: 124 RGGGRKPWPQKGMGRARHGSIRSPLFKGGGV-------------------------VHGP 158
Query: 173 LNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGP 232
+P +LP V+GLTSTLS+KL QDDLHI++++ +P D ++L++L+ ER WGP
Sbjct: 159 RSPTTHFYMLPFYKR-VLGLTSTLSVKLAQDDLHIIENVDIPTKDGQFLKDLIAERNWGP 217
Query: 233 SVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLLL 290
SVL VD NI TD++ + N+MP++G N +MLKHDTLV+TV A+K +E +LL
Sbjct: 218 SVLIVDEDHMFPANICQATDELGYVNLMPSFGLNVYSMLKHDTLVLTVAAVKHLEQRLLY 277
Query: 291 ALNRSDNERFTSRFVIDTV 309
LNRSD +F +D V
Sbjct: 278 QLNRSDAASKGGKFKLDQV 296
>gi|321468499|gb|EFX79483.1| hypothetical protein DAPPUDRAFT_52198 [Daphnia pulex]
Length = 258
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 115/266 (43%), Positives = 153/266 (57%), Gaps = 28/266 (10%)
Query: 46 FQNAFLQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDH 105
F F PRQ WV N+DT EE+ G ++LHP++F PRLD+I N+ WQ+ Y+ V + H
Sbjct: 19 FPPKFKIPRQVWVSNMDTVEEEKLGLIDLHPEVFAERPRLDIIHENVRWQQLYRHVSYAH 78
Query: 106 TKVTNEVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEE 165
TK++ EV GRKP PQKG G R ++ G G +
Sbjct: 79 TKMSYEVRGGGRKPRPQKGSGRSRHGSIRSPIWVGGGVV----------HGPRSPKPYFY 128
Query: 166 EEEITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLV 225
A LN GL STLS KL QDDLHIV+ L +P DDPKYLE LV
Sbjct: 129 MLGFNARLN----------------GLRSTLSAKLAQDDLHIVESLDIPTDDPKYLEALV 172
Query: 226 EERCWGPSVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQ 283
EER WGPSVLFVD+ D M NI+ +D HYN+MP YG N +MLKH TLV+T+ A+++
Sbjct: 173 EERGWGPSVLFVDDHDIMPLNITAASDAYGHYNLMPVYGLNVFSMLKHTTLVMTLSAVER 232
Query: 284 IEDKLLLALNRSDNERFTSRFVIDTV 309
+E+++L LNR+D T+++ + +V
Sbjct: 233 LEERILFHLNRNDAAEATAKYKLSSV 258
>gi|158297277|ref|XP_317543.4| AGAP007937-PA [Anopheles gambiae str. PEST]
gi|157015117|gb|EAA12669.4| AGAP007937-PA [Anopheles gambiae str. PEST]
Length = 224
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 115/249 (46%), Positives = 146/249 (58%), Gaps = 28/249 (11%)
Query: 61 LDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPW 120
+DT E H G V L +FG PR+D++ NIEWQ+KY++V F HTK NEV GRKPW
Sbjct: 1 MDTVEPAHSGIVELDNAVFGASPRIDIVHQNIEWQRKYRFVSFAHTKTRNEVRGGGRKPW 60
Query: 121 PQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCR 180
PQKGL G R L+ G G +P
Sbjct: 61 PQKGLGRARHGSIRSPLWRGGGIAHGPR-------------------------SPTTHFY 95
Query: 181 ILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDNT 240
+LP + V+GL STLSIKL QDDLH+VK+L +P DDP+YL++LV R WGPSVLFVD T
Sbjct: 96 MLPFF-NRVLGLVSTLSIKLAQDDLHVVKNLEIPTDDPQYLQDLVAARQWGPSVLFVDAT 154
Query: 241 DYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLLLALNRSDNE 298
D + RNISI + I H N+MP YG N +MLKH+T+V+T DA++ +E KLL LNR+D
Sbjct: 155 DVLSRNISISAENIDHINLMPTYGLNVYSMLKHNTVVLTEDAVRSVESKLLEHLNRNDAR 214
Query: 299 RFTSRFVID 307
+F D
Sbjct: 215 AQMCKFKYD 223
>gi|357630814|gb|EHJ78691.1| ribosomal protein L4 [Danaus plexippus]
Length = 285
Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 118/300 (39%), Positives = 167/300 (55%), Gaps = 41/300 (13%)
Query: 22 AILDFLWFNDFTSNKSEILHETK----------EFQNAFLQPRQAWVENLDTTEEKHFGF 71
++L + F T+N S ++ +F ++ +PR+ W+ENLDT EEK G
Sbjct: 15 SVLPQIRFCSLTANSSSAINVINNEVSVTKKEWKFPPSYTKPREVWIENLDTIEEKKVGL 74
Query: 72 VNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERLDG 131
LHP ++ PR+D+I N+ WQ+KY+WV + HTK EV G+KPWPQKGL G
Sbjct: 75 FELHPLVYAAAPRIDIIHKNVVWQRKYRWVSWAHTKTRAEVRGGGKKPWPQKGLGRARHG 134
Query: 132 KRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRILPVMVHIVVG 191
R L+ G G + +I + L+ G
Sbjct: 135 SIRSPLWRGGGIA----------HGPRSGKTHFYMLDIYSRLH----------------G 168
Query: 192 LTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDNTDYMERNISIVT 251
LTSTLS K QDDLH+V+DL LP D+ +YL L+E+R WGPSVL VD+TDY RNI++ T
Sbjct: 169 LTSTLSAKFAQDDLHVVRDLELPTDESEYLIELIEKRNWGPSVLLVDDTDYAPRNITVAT 228
Query: 252 DQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLLLALNRSDNERFTSRFVIDTV 309
D +++ NIMP YG N +MLKHDTLV+T A ++IE+++L LN + + S+F + V
Sbjct: 229 DSLQYVNIMPVYGLNVYSMLKHDTLVLTQAAAEKIEERILHHLNST---KGVSKFKLSQV 285
>gi|346472881|gb|AEO36285.1| hypothetical protein [Amblyomma maculatum]
Length = 309
Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 114/254 (44%), Positives = 148/254 (58%), Gaps = 28/254 (11%)
Query: 46 FQNAFLQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDH 105
+ + F R+AWVENLDT E + G + LHP +FG+ PR+D + N+ WQ Y+ V +
Sbjct: 68 YPSKFTPNREAWVENLDTIESEKLGLIPLHPKVFGVFPRIDTLHWNVNWQLYYQKVDWTT 127
Query: 106 TKVTNEVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEE 165
T+ E GRKPWPQKG G R L+ G G
Sbjct: 128 TQTRAERRGGGRKPWPQKGTGRARHGSIRSPLWKGGGIAHGPR----------------- 170
Query: 166 EEEITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLV 225
P +LP V GLT+ LS+K QDDL IV L LP +D KYLENLV
Sbjct: 171 --------GPRTYYYMLPFFRR-VQGLTTALSVKFAQDDLKIVDSLDLPTNDSKYLENLV 221
Query: 226 EERCWGPSVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQ 283
EER WGPSVLFVDNTDY+ NI+I+ D++KH+NIMP YG N +MLKHDTLV+T+ A+++
Sbjct: 222 EERFWGPSVLFVDNTDYVSENIAIICDEVKHFNIMPVYGLNVFSMLKHDTLVLTLSAVEE 281
Query: 284 IEDKLLLALNRSDN 297
IE+KLL ++R+D
Sbjct: 282 IENKLLYQMSRTDG 295
>gi|195034530|ref|XP_001988917.1| GH11428 [Drosophila grimshawi]
gi|193904917|gb|EDW03784.1| GH11428 [Drosophila grimshawi]
Length = 923
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 107/258 (41%), Positives = 151/258 (58%), Gaps = 28/258 (10%)
Query: 54 RQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVE 113
RQ W+EN+D +E+ G + LHPD+F PR+D+I NIEWQ+KY++V HTK EV
Sbjct: 692 RQVWIENVDAVKERKVGMMELHPDVFAAQPRVDIIQENIEWQRKYRYVSMAHTKTRAEVR 751
Query: 114 RTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATL 173
GRKPWPQKG+ G R L+ G G +
Sbjct: 752 GGGRKPWPQKGMGRARHGSIRSPLFKGGGI-------------------------VHGPR 786
Query: 174 NPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPS 233
+P +LP V+GLTSTLS+KL QDDLHI++++ LP D +++ +L+ ER WGPS
Sbjct: 787 SPTSHFYMLPFYTR-VLGLTSTLSVKLAQDDLHIIENVELPTRDAQFIRDLIAERNWGPS 845
Query: 234 VLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLLLA 291
VL +D + NI TD I + N+MP++G N +MLKHDTLV+TV+A+K +E +LL
Sbjct: 846 VLIIDKQEMFPENICYATDSIGYVNLMPSFGLNVYSMLKHDTLVLTVEAVKHLEQRLLYQ 905
Query: 292 LNRSDNERFTSRFVIDTV 309
L+R+D + +F +D V
Sbjct: 906 LHRNDAASKSLKFKLDQV 923
>gi|125986720|ref|XP_001357123.1| GA19152 [Drosophila pseudoobscura pseudoobscura]
gi|195160102|ref|XP_002020915.1| GL14082 [Drosophila persimilis]
gi|54645450|gb|EAL34189.1| GA19152 [Drosophila pseudoobscura pseudoobscura]
gi|194117865|gb|EDW39908.1| GL14082 [Drosophila persimilis]
Length = 293
Score = 211 bits (536), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 109/259 (42%), Positives = 149/259 (57%), Gaps = 28/259 (10%)
Query: 53 PRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEV 112
PRQAW+EN+D E+ G + LHPD+F PR+DVI NIEWQ+KY++V H K EV
Sbjct: 61 PRQAWIENIDAVAERKMGLIELHPDVFAAQPRVDVIQENIEWQRKYRYVSLAHAKTRAEV 120
Query: 113 ERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITAT 172
GRKPWPQKG+ G R L+ G G I
Sbjct: 121 RGGGRKPWPQKGMGRARHGSIRSPLFKGGGV-------------------------IHGP 155
Query: 173 LNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGP 232
+P +LP V+GLTSTLS+KL QDDLH+++++ +P D +++++L+ ER WGP
Sbjct: 156 RSPTTHFYMLPFYKR-VMGLTSTLSVKLAQDDLHVIENVDIPTRDAQFIKDLIAERNWGP 214
Query: 233 SVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLLL 290
SVL VD NI TD + + N+MPA+G N +MLKHDTLV+TVDA+K +E +LL
Sbjct: 215 SVLIVDKEYMFPENICYATDDLGYVNLMPAFGLNVYSMLKHDTLVLTVDAVKHLEQRLLY 274
Query: 291 ALNRSDNERFTSRFVIDTV 309
+R+D +F +D V
Sbjct: 275 QQHRTDATSKGGKFKLDQV 293
>gi|346466693|gb|AEO33191.1| hypothetical protein [Amblyomma maculatum]
Length = 293
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 114/252 (45%), Positives = 147/252 (58%), Gaps = 28/252 (11%)
Query: 48 NAFLQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTK 107
+ F R+AWVENLDT E + G + LHP +FG+ PR+D + N+ WQ Y+ V + T+
Sbjct: 54 SKFTPNREAWVENLDTIESEKLGLIPLHPKVFGVFPRIDTLHWNVNWQLYYQKVDWTTTQ 113
Query: 108 VTNEVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEE 167
E GRKPWPQKG G R L+ G G
Sbjct: 114 TRAERRGGGRKPWPQKGTGRARHGSIRSPLWKGGGIAHGPR------------------- 154
Query: 168 EITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEE 227
P +LP V GLT+ LS+K QDDL IV L LP +D KYLENLVEE
Sbjct: 155 ------GPRTYYYMLPFFRR-VQGLTTALSVKFAQDDLKIVDSLDLPTNDSKYLENLVEE 207
Query: 228 RCWGPSVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIE 285
R WGPSVLFVDNTDY+ NI+I+ D++KH+NIMP YG N +MLKHDTLV+T+ A+++IE
Sbjct: 208 RFWGPSVLFVDNTDYVSENIAIICDEVKHFNIMPVYGLNVFSMLKHDTLVLTLSAVEEIE 267
Query: 286 DKLLLALNRSDN 297
+KLL ++R+D
Sbjct: 268 NKLLYQMSRTDG 279
>gi|442749073|gb|JAA66696.1| Putative mitochondrial/chloroplast ribosomal protein l4 [Ixodes
ricinus]
Length = 310
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 118/267 (44%), Positives = 147/267 (55%), Gaps = 28/267 (10%)
Query: 39 ILHETKEFQNAFLQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKY 98
I + + F Q R+AWVENLDT E + G V LHP IF PR+D + NI WQK Y
Sbjct: 63 ITNRKLAYPPKFTQCREAWVENLDTVESEKLGLVPLHPKIFAGFPRIDTLHWNIHWQKNY 122
Query: 99 KWVRFDHTKVTNEVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEE 158
+ V + + E GRKPWPQKG G R + G G
Sbjct: 123 QRVDWATAQTRAERRGGGRKPWPQKGTGRARHGSIRAPQWKGGGVAMGPR---------- 172
Query: 159 EEEEEEEEEEITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDP 218
P +LP V GL + LS+K QDDL IV L LP DDP
Sbjct: 173 ---------------GPRTYFYMLPFFRR-VEGLITALSVKFAQDDLKIVDALELPSDDP 216
Query: 219 KYLENLVEERCWGPSVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVI 276
K+L+NLV+ER WGPSVLFVDNTDY+ +NI++ DQIKH NIMP YG N +MLK+DTLV+
Sbjct: 217 KFLQNLVDERVWGPSVLFVDNTDYVPKNIAVACDQIKHMNIMPVYGLNVHSMLKYDTLVL 276
Query: 277 TVDALKQIEDKLLLALNRSDNERFTSR 303
T+ A ++IE KLL LNR+D T++
Sbjct: 277 TLSAAEEIEAKLLYQLNRTDIREVTAQ 303
>gi|289742297|gb|ADD19896.1| mitochondrial ribosomal protein L4 [Glossina morsitans morsitans]
Length = 301
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 108/246 (43%), Positives = 147/246 (59%), Gaps = 28/246 (11%)
Query: 54 RQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVE 113
RQ W+EN+D +E+ G + LHPD+F PR+DVI NIEWQ+KY++V F H+K EV
Sbjct: 70 RQVWIENIDDVQERKLGIIELHPDVFATQPRVDVIHENIEWQRKYRFVSFAHSKTRAEVR 129
Query: 114 RTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATL 173
GRKPWPQKG G R L+ G G
Sbjct: 130 GGGRKPWPQKGTGRARHGSIRSPLFRGGGRAHGPR------------------------- 164
Query: 174 NPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPS 233
+P +LP V+GLT+TLS+KL QDDLHI+KD+ +P D ++L++L+ ER WGPS
Sbjct: 165 SPTTHFYMLPFFKR-VMGLTATLSVKLAQDDLHIIKDVEIPSGDHQFLKDLIIERNWGPS 223
Query: 234 VLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLLLA 291
VL VD D NI TD++ + N+MPAY N +MLKHDTLV+T++A+K IE++LL
Sbjct: 224 VLIVDKEDIFPENICEATDKLGYVNLMPAYSLNTYSMLKHDTLVLTINAVKHIEERLLYQ 283
Query: 292 LNRSDN 297
L+R+D+
Sbjct: 284 LHRADS 289
>gi|195437861|ref|XP_002066858.1| GK24328 [Drosophila willistoni]
gi|194162943|gb|EDW77844.1| GK24328 [Drosophila willistoni]
Length = 296
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 109/258 (42%), Positives = 148/258 (57%), Gaps = 28/258 (10%)
Query: 54 RQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVE 113
RQAW+EN DT E+ G + LHPD+F PR+D+I N+EWQ+KY++V H K EV
Sbjct: 65 RQAWIENTDTVAERKVGLIELHPDVFAAQPRVDIIQENVEWQRKYRYVSMAHAKTRAEVR 124
Query: 114 RTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATL 173
GRKPWPQKG G R L+ G G I
Sbjct: 125 GGGRKPWPQKGQGRARHGSIRSPLFKGGGV-------------------------IHGPR 159
Query: 174 NPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPS 233
+P +LP V+GLTSTLS+KL QDDLHI++ +P +P+++++L++ER WGPS
Sbjct: 160 SPTTHFYMLPFYKR-VLGLTSTLSVKLAQDDLHIIESTDIPTTEPQFIKDLIDERQWGPS 218
Query: 234 VLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLLLA 291
VL VD D NI TD++ N+MP +G N +MLKHDTLV+TVDA+K +E +LL
Sbjct: 219 VLIVDKADIFPENICYATDELGFVNLMPTFGLNVYSMLKHDTLVLTVDAVKHLEQRLLYQ 278
Query: 292 LNRSDNERFTSRFVIDTV 309
L+R+D +F +D V
Sbjct: 279 LHRNDAISKGDKFKLDQV 296
>gi|427787899|gb|JAA59401.1| Putative mitochondrial ribosomal protein l4 [Rhipicephalus
pulchellus]
Length = 308
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 113/260 (43%), Positives = 149/260 (57%), Gaps = 28/260 (10%)
Query: 46 FQNAFLQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDH 105
+ + F R+AWVENLDT E + G + LHP +FG+ PR+D + NI WQ Y+ V +
Sbjct: 68 YPSKFTPNREAWVENLDTIESEKLGLIPLHPKVFGVFPRIDTLHWNINWQNNYQKVDWTT 127
Query: 106 TKVTNEVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEE 165
T+ E GRKPWPQKG G R ++ G G
Sbjct: 128 TESRAERRGGGRKPWPQKGTGRARHGSIRSPIWKGGGIAHGPR----------------- 170
Query: 166 EEEITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLV 225
P +LP V GLT+ LS+KL QDDL IV +L LP +D KYL LV
Sbjct: 171 --------GPRTYYYMLPFFRR-VQGLTTALSVKLAQDDLKIVDNLDLPTNDSKYLLKLV 221
Query: 226 EERCWGPSVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQ 283
+ER WGPSVLFVDNTDY+ NI+++ D++KH+NIMP YG N +MLKHDTLV+T+ A+++
Sbjct: 222 DERFWGPSVLFVDNTDYVSENIALICDEVKHFNIMPVYGLNVHSMLKHDTLVLTLSAVEE 281
Query: 284 IEDKLLLALNRSDNERFTSR 303
IE+KLL L+R D + R
Sbjct: 282 IENKLLYQLHRIDGKEVAQR 301
>gi|346465399|gb|AEO32544.1| hypothetical protein [Amblyomma maculatum]
Length = 294
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 112/254 (44%), Positives = 147/254 (57%), Gaps = 28/254 (11%)
Query: 46 FQNAFLQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDH 105
+ + F R+AWVENLDT E + G + L ++FG+ PR+D + N+ WQ Y+ V +
Sbjct: 53 YPSKFTPNREAWVENLDTIESEKLGLIPLLTEVFGVFPRIDTLHWNVNWQLYYQKVDWTT 112
Query: 106 TKVTNEVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEE 165
T+ E GRKPWPQKG G R L+ G G
Sbjct: 113 TQTRAERRGGGRKPWPQKGTGRARHGSIRSPLWKGGGIAHGPR----------------- 155
Query: 166 EEEITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLV 225
P +LP V GLT+ LS+K QDDL IV L LP +D KYLENLV
Sbjct: 156 --------GPRTYYYMLPFFRR-VQGLTTALSVKFAQDDLKIVDSLDLPTNDSKYLENLV 206
Query: 226 EERCWGPSVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQ 283
EER WGPSVLFVDNTDY+ NI+I+ D++KH+NIMP YG N +MLKHDTLV+T+ A+++
Sbjct: 207 EERFWGPSVLFVDNTDYVSENIAIICDEVKHFNIMPVYGLNVFSMLKHDTLVLTLSAVEE 266
Query: 284 IEDKLLLALNRSDN 297
IE+KLL ++R+D
Sbjct: 267 IENKLLYQMSRTDG 280
>gi|312376204|gb|EFR23370.1| hypothetical protein AND_13049 [Anopheles darlingi]
Length = 490
Score = 204 bits (518), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 106/238 (44%), Positives = 142/238 (59%), Gaps = 28/238 (11%)
Query: 53 PRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEV 112
PR+ W+E+L T +E+ G ++L +FG PR+D++ NIEWQ+KY++V F H+K NEV
Sbjct: 35 PREVWLESLGTVQEQKLGILSLENAVFGASPRIDIVHQNIEWQRKYRFVSFAHSKTRNEV 94
Query: 113 ERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITAT 172
GRKPWPQKGL G R L+ G G
Sbjct: 95 RGGGRKPWPQKGLGRARHGSIRSPLWRGGGIAHGPR------------------------ 130
Query: 173 LNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGP 232
+P +LP + V+GL STLSIKL Q+DLH+V+DL +P +DP+YL +LV ER WGP
Sbjct: 131 -SPTTHFYMLPFF-NRVLGLVSTLSIKLAQNDLHVVQDLEIPTEDPQYLRDLVSERLWGP 188
Query: 233 SVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKL 288
SVLFVD++D + RNISI D I H N+MP YG N +MLKH+TLV+T AL + +
Sbjct: 189 SVLFVDSSDILPRNISIGADSINHINLMPVYGLNVYSMLKHNTLVLTESALAHADKDI 246
>gi|195343148|ref|XP_002038160.1| GM17909 [Drosophila sechellia]
gi|194133010|gb|EDW54578.1| GM17909 [Drosophila sechellia]
Length = 296
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 106/258 (41%), Positives = 145/258 (56%), Gaps = 28/258 (10%)
Query: 54 RQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVE 113
RQAW+EN D E+ G + LHPD+F PR+D+I N+EWQ+KY++V HTK EV
Sbjct: 65 RQAWIENTDAVAERKVGLIELHPDVFAAQPRVDIIQENVEWQRKYRYVSMAHTKTRAEVR 124
Query: 114 RTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATL 173
GRKPWPQKG G R + G G +
Sbjct: 125 GGGRKPWPQKGGGRARHGSLRSPMLKGGGV-------------------------VHGPR 159
Query: 174 NPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPS 233
+P +LP V+GLTSTLS+KL QDDLHI++++ +P D ++L++L+ ER WGPS
Sbjct: 160 SPTTHFYMLPFYKR-VLGLTSTLSVKLAQDDLHIIENVDIPTGDAEFLKDLIAERNWGPS 218
Query: 234 VLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLLLA 291
VL VD NI +D + + N+MP +G N +MLKHDTLV+TV A+K +E +LL
Sbjct: 219 VLIVDEDHMFPANICQASDDLGYVNLMPTFGLNVYSMLKHDTLVLTVAAVKHLEQRLLFQ 278
Query: 292 LNRSDNERFTSRFVIDTV 309
LNR+D +F +D V
Sbjct: 279 LNRNDAASKGGKFKLDQV 296
>gi|195579557|ref|XP_002079628.1| GD21919 [Drosophila simulans]
gi|194191637|gb|EDX05213.1| GD21919 [Drosophila simulans]
Length = 296
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 106/258 (41%), Positives = 145/258 (56%), Gaps = 28/258 (10%)
Query: 54 RQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVE 113
RQAW+EN D E+ G + LHPD+F PR+D+I N+EWQ+KY++V HTK EV
Sbjct: 65 RQAWIENTDAVAERKVGLIELHPDVFAAQPRVDIIQENVEWQRKYRYVSMAHTKTRAEVR 124
Query: 114 RTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATL 173
GRKPWPQKG G R + G G +
Sbjct: 125 GGGRKPWPQKGGGRARHGSLRSPMLKGGGV-------------------------VHGPR 159
Query: 174 NPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPS 233
+P +LP V+GLTSTLS+KL QDDLHI++++ +P D ++L++L+ ER WGPS
Sbjct: 160 SPTTHFYMLPFYKR-VLGLTSTLSVKLAQDDLHIIENVDIPTGDAEFLKDLIAERNWGPS 218
Query: 234 VLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLLLA 291
VL VD NI +D + + N+MP +G N +MLKHDTLV+TV A+K +E +LL
Sbjct: 219 VLIVDEDHMFPANICQASDDLGYVNLMPTFGLNVYSMLKHDTLVLTVAAVKHLEQRLLYQ 278
Query: 292 LNRSDNERFTSRFVIDTV 309
LNR+D +F +D V
Sbjct: 279 LNRNDAASKGGKFKLDQV 296
>gi|194857837|ref|XP_001969044.1| GG24171 [Drosophila erecta]
gi|190660911|gb|EDV58103.1| GG24171 [Drosophila erecta]
Length = 296
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 107/258 (41%), Positives = 144/258 (55%), Gaps = 28/258 (10%)
Query: 54 RQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVE 113
RQAW+EN D E+ G + LHPDIF PR+D+I N+EWQ+KY++V HTK EV
Sbjct: 65 RQAWIENTDAVAERKVGLIELHPDIFAAQPRVDIIQENVEWQRKYRYVSMAHTKTRAEVR 124
Query: 114 RTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATL 173
GRKPWPQKG G R + G G +
Sbjct: 125 GGGRKPWPQKGGGRARHGSLRSPMLKGGGV-------------------------VHGPR 159
Query: 174 NPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPS 233
+P +LP V+GLTSTLS+KL QDDLHI++ + +P D ++L++L+ ER WGPS
Sbjct: 160 SPTTHFYMLPFYKR-VLGLTSTLSVKLAQDDLHIIESVDIPTGDAEFLKDLIAERNWGPS 218
Query: 234 VLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLLLA 291
VL VD NI +D + + N+MP +G N +MLKHDTLV+TV A+K +E +LL
Sbjct: 219 VLIVDEDHMFPANICQASDDLGYVNLMPTFGLNVYSMLKHDTLVLTVAAVKHLEQRLLYQ 278
Query: 292 LNRSDNERFTSRFVIDTV 309
LNR+D +F +D V
Sbjct: 279 LNRNDAASKGGKFKLDQV 296
>gi|17933744|ref|NP_524939.1| mitochondrial ribosomal protein L4 [Drosophila melanogaster]
gi|7298296|gb|AAF53526.1| mitochondrial ribosomal protein L4 [Drosophila melanogaster]
gi|16769472|gb|AAL28955.1| LD33485p [Drosophila melanogaster]
gi|220944276|gb|ACL84681.1| mRpL4-PA [synthetic construct]
gi|220954122|gb|ACL89604.1| mRpL4-PA [synthetic construct]
Length = 296
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 106/258 (41%), Positives = 143/258 (55%), Gaps = 28/258 (10%)
Query: 54 RQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVE 113
RQAW+EN D E+ G + LHPD+F PR+D+I N+EWQ KY++V HTK EV
Sbjct: 65 RQAWIENTDAVAERKVGLIELHPDVFAAQPRVDIIQENVEWQSKYRYVSMAHTKTRAEVR 124
Query: 114 RTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATL 173
GRKPWPQKG G R + G G +
Sbjct: 125 GGGRKPWPQKGGGRARHGSLRSPMLKGGGV-------------------------VHGPR 159
Query: 174 NPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPS 233
+P +LP V+GLTSTLS+KL QDDLHI+ ++ +P D ++L++L+ ER WGPS
Sbjct: 160 SPTTHFYMLPFYKR-VLGLTSTLSVKLAQDDLHIIDNVDIPTGDAEFLKDLIAERNWGPS 218
Query: 234 VLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLLLA 291
VL VD NI +D + + N+MP +G N +MLKHDTLV+TV A+K +E +LL
Sbjct: 219 VLIVDEDHMFPANICQASDDLGYVNLMPTFGLNVYSMLKHDTLVLTVAAVKHLEQRLLYQ 278
Query: 292 LNRSDNERFTSRFVIDTV 309
LNR+D +F +D V
Sbjct: 279 LNRNDAASKGGKFKLDQV 296
>gi|195475362|ref|XP_002089953.1| GE19365 [Drosophila yakuba]
gi|194176054|gb|EDW89665.1| GE19365 [Drosophila yakuba]
Length = 296
Score = 200 bits (508), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 106/258 (41%), Positives = 145/258 (56%), Gaps = 28/258 (10%)
Query: 54 RQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVE 113
RQAW+EN D E+ G + LHPD+F PR+D+I N+EWQ+KY++V HTK EV
Sbjct: 65 RQAWIENTDAVAERKVGLIELHPDVFAAQPRVDLIQENVEWQRKYRYVSMAHTKNRAEVR 124
Query: 114 RTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATL 173
GRKPWPQKG G R + G G +
Sbjct: 125 GGGRKPWPQKGGGRARHGSLRSPMLKGGGV-------------------------VHGPR 159
Query: 174 NPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPS 233
+P +LP V+GLTSTLS+KL QDDLHI++++ +P D +L++L+ ER WGPS
Sbjct: 160 SPTTHFYMLPFYKR-VLGLTSTLSVKLAQDDLHIIENVDIPTRDSDFLKDLIAERNWGPS 218
Query: 234 VLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLLLA 291
VL VD+ NI +D + + N+MP +G N +MLKHDTLV+TV A+K +E +LL
Sbjct: 219 VLIVDDDHMFPANICQASDDLGYVNLMPTFGLNVYSMLKHDTLVLTVAAVKHLEQRLLYQ 278
Query: 292 LNRSDNERFTSRFVIDTV 309
LNR+D +F +D V
Sbjct: 279 LNRNDAASKGGKFKLDQV 296
>gi|242014210|ref|XP_002427784.1| mitochondrial 50S ribosomal protein L4, putative [Pediculus humanus
corporis]
gi|212512253|gb|EEB15046.1| mitochondrial 50S ribosomal protein L4, putative [Pediculus humanus
corporis]
Length = 286
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 110/267 (41%), Positives = 146/267 (54%), Gaps = 28/267 (10%)
Query: 29 FNDFTSNKSEILHETKEFQNAFLQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVI 88
N F S IL + N + +PR+ WVEN+D+ +E+ G V L+P IFG +PRLD+I
Sbjct: 39 LNTFESQFCPILERKLQISNNYAKPREVWVENVDSIKEQKRGLVQLNPSIFGTIPRLDLI 98
Query: 89 TMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEE 148
NI+WQ Y V K E++ +GRKP PQKG G RR G G
Sbjct: 99 YYNIKWQSLYSRVILYSAKTRAEMKGSGRKPHPQKGTGRARLGSRRAPQVKGGGT----- 153
Query: 149 EEEEEEEEEEEEEEEEEEEEITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIV 208
NP +P+ I GLTSTLS KL Q+DLH+V
Sbjct: 154 --------------------CHGPRNPTSYYFRIPLYKKIH-GLTSTLSAKLAQNDLHVV 192
Query: 209 KDLVLPVDDPKYLENLVEERCWGPSVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN-- 266
++ +P DD +Y+ +L++ER WG SVL VD+ D M RNISI TD I + +MP YG N
Sbjct: 193 DNINIPTDDSQYMIDLMKERNWGSSVLIVDSDDIMPRNISIATDSIGYITLMPVYGLNVY 252
Query: 267 NMLKHDTLVITVDALKQIEDKLLLALN 293
MLKHDTLV+T+ AL ++E+KL+ LN
Sbjct: 253 GMLKHDTLVLTLSALDELENKLVSVLN 279
>gi|345486278|ref|XP_003425435.1| PREDICTED: LOW QUALITY PROTEIN: 39S ribosomal protein L4,
mitochondrial [Nasonia vitripennis]
Length = 261
Score = 187 bits (475), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 106/282 (37%), Positives = 149/282 (52%), Gaps = 38/282 (13%)
Query: 18 FRRPAILDFLWFNDFTSNKSEILHETKEF---QNAFLQPRQAWVENLDTTEEKHFGFVNL 74
F A +D + +TS I+ TK++ +++PRQAW+ENLDT EEK G + L
Sbjct: 7 FSTAASVDNVANTSYTSEIEPII-STKKYLDEHKFYIKPRQAWIENLDTIEEKKLGLITL 65
Query: 75 HPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERLDGKRR 134
HPDIFG +PR+D+I N+ WQ+ Y++V + +TKV +EV GRKPWPQKG+ G R
Sbjct: 66 HPDIFGALPRVDIIHENVRWQQLYRYVSYANTKVRSEVRGGGRKPWPQKGMGRARHGSXR 125
Query: 135 PRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRILPVMVHIVVGLTS 194
L+ G I +P +LP
Sbjct: 126 SPLWRKGG-------------------------VIHGPRSPTPYFYMLPF-------YXX 153
Query: 195 TLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDNTDYMERNISIVTDQI 254
+L +P D+P Y+ L +ER WGPS+LF+DN D + +NI+I T+ I
Sbjct: 154 XXXXXXXXXXXXXXXELEIPSDEPSYMLELAKERKWGPSILFIDNNDIVPQNIAIATNTI 213
Query: 255 KHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLLLALNR 294
H N+MP YG N +MLKH+TLV+T A++ IEDKLL LN+
Sbjct: 214 NHMNLMPVYGLNVYSMLKHETLVLTESAVRLIEDKLLFHLNK 255
>gi|395512585|ref|XP_003760516.1| PREDICTED: 39S ribosomal protein L4, mitochondrial [Sarcophilus
harrisii]
Length = 297
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 132/254 (51%), Gaps = 33/254 (12%)
Query: 53 PRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEV 112
P QAWVE+L EE G +LHPD+F + PRLD++ WQK +K + + TK EV
Sbjct: 65 PVQAWVESLRGYEETRLGLADLHPDVFSVAPRLDILHEVAIWQKNFKRISYAKTKTRAEV 124
Query: 113 ERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITAT 172
GRKPW QKG G R ++ G G
Sbjct: 125 RGGGRKPWRQKGSGRARHGSIRSPIWRGGGIAHGPR------------------------ 160
Query: 173 LNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGP 232
P +LP+ V V+GL L++KLMQDDLH+V L LP DPKYL +LV RCWG
Sbjct: 161 -GPTSYYYMLPMKVR-VLGLKVALTVKLMQDDLHVVDSLELPTSDPKYLSDLVRHRCWGD 218
Query: 233 SVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLLL 290
SVL VD + M +NI +K N++PA G N +MLKH TLV+T++ + +E KLL
Sbjct: 219 SVLLVDVNEEMPQNIVSAVSNLKTINLIPAVGLNVHSMLKHQTLVLTLNTVAFLEKKLLW 278
Query: 291 ALNRSDNERFTSRF 304
++R+T+ +
Sbjct: 279 -----HDKRYTALY 287
>gi|395851077|ref|XP_003798093.1| PREDICTED: 39S ribosomal protein L4, mitochondrial [Otolemur
garnettii]
Length = 295
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 99/259 (38%), Positives = 132/259 (50%), Gaps = 29/259 (11%)
Query: 34 SNKSEILHETKEFQNAFLQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIE 93
S + +L + + A L+P QAWVE+L E++ G LHPD+F PRLD++
Sbjct: 43 SEPAPVLRKCELPVPAHLRPVQAWVESLKGYEQERVGLAELHPDVFATAPRLDILHQVAI 102
Query: 94 WQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEE 153
WQK +K + + TK EV GRKPWPQKG G R ++ G G
Sbjct: 103 WQKNFKRISYAKTKTRAEVRGGGRKPWPQKGTGRARHGSIRSPIWRGGGVAHGPR----- 157
Query: 154 EEEEEEEEEEEEEEEITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVL 213
P +LP+ V GL L++KL QDDLHIV L L
Sbjct: 158 --------------------GPTSYYYMLPMKVR-ARGLKIALTVKLAQDDLHIVDSLEL 196
Query: 214 PVDDPKYLENLVEERCWGPSVLFVD-NTDYMERNISIVTDQIKHYNIMPAYGEN--NMLK 270
P DP+YL L RCWG SVL VD + M +NI T ++K +N++PA G N +MLK
Sbjct: 197 PTADPQYLTELARYRCWGDSVLLVDLAYEEMPQNIVEATSRLKTFNLIPAVGLNVHSMLK 256
Query: 271 HDTLVITVDALKQIEDKLL 289
H TLV+T+ + +EDKLL
Sbjct: 257 HQTLVLTLPTIAFLEDKLL 275
>gi|391333411|ref|XP_003741107.1| PREDICTED: 39S ribosomal protein L4, mitochondrial-like
[Metaseiulus occidentalis]
Length = 311
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 95/268 (35%), Positives = 140/268 (52%), Gaps = 34/268 (12%)
Query: 46 FQNAFLQPRQAWVENLDTTE-EKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFD 104
+Q+A ++WVE L E G LHPD+FG PR D++ N WQK Y+ + +
Sbjct: 64 YQDAL----ESWVETLKVKEIASKVGTTYLHPDVFGAFPRTDLLHWNCYWQKMYRRIDWG 119
Query: 105 HTKVTNEVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEE 164
K T E++ GRKPWPQKG+ + G R L+ G+
Sbjct: 120 SAKCTFEMKGGGRKPWPQKGMGKARHGSIRSPLWHKGGKA-------------------- 159
Query: 165 EEEEITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDL-VLPVDDPKYLEN 223
P +LP V GL + LS K Q+DL IV L LP DDPK+LE+
Sbjct: 160 -----LGPRGPTSYYFMLPYTKR-VHGLQAALSCKFAQNDLRIVDSLDSLPTDDPKFLED 213
Query: 224 LVEERCWGPSVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDAL 281
L E+R WGPSVLFV + RN+++ D + H NIMP +G N +MLKH+T+V+++ +
Sbjct: 214 LCEQRYWGPSVLFVHEDELAPRNLTMACDSVGHLNIMPVFGLNVYSMLKHETVVLSLKSC 273
Query: 282 KQIEDKLLLALNRSDNERFTSRFVIDTV 309
+ I+++++ AL RSD S++ + +
Sbjct: 274 EMIQERIIYALRRSDAHLVDSKYKVRPI 301
>gi|443727243|gb|ELU14082.1| hypothetical protein CAPTEDRAFT_138537 [Capitella teleta]
gi|443731458|gb|ELU16577.1| hypothetical protein CAPTEDRAFT_182691 [Capitella teleta]
Length = 254
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 93/253 (36%), Positives = 137/253 (54%), Gaps = 32/253 (12%)
Query: 52 QPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNE 111
+P+QAW+E L + E + G ++LHP++F + PR+D++ NI WQ+ Y+ + D+TK +
Sbjct: 14 KPKQAWLETLSSIENEKLGIIDLHPEVFAVFPRIDILHENIHWQRFYR--KIDYTKQLSR 71
Query: 112 VERTG--RKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEI 169
E G RKPW QKG + G R L+ G+
Sbjct: 72 AELWGGTRKPWQQKGTGKARHGSNRSPLWFHGGKS------------------------- 106
Query: 170 TATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERC 229
P +LP V+GL + LS+K Q++LHIV L +P DP+YLE L+E R
Sbjct: 107 FGPRGPKSYFYMLPTSKR-VLGLATALSVKYAQNNLHIVDSLEIPSSDPEYLEELIETRG 165
Query: 230 WGPSVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDK 287
WG SVLF++ D + NI +++ K YNIM AYG N +MLKH+TLV+T+ AL+ IE
Sbjct: 166 WGLSVLFINEFDIIPENIGAASEEHKPYNIMAAYGLNVYSMLKHETLVLTLPALEHIEKS 225
Query: 288 LLLALNRSDNERF 300
LL ++ D +
Sbjct: 226 LLAHMHSHDARDY 238
>gi|354475149|ref|XP_003499792.1| PREDICTED: 39S ribosomal protein L4, mitochondrial-like [Cricetulus
griseus]
gi|344240104|gb|EGV96207.1| 39S ribosomal protein L4, mitochondrial [Cricetulus griseus]
Length = 294
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 127/244 (52%), Gaps = 29/244 (11%)
Query: 49 AFLQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKV 108
A +P AWVE+L E++ G LHPD+F PRLD++ WQK +K + + TK
Sbjct: 57 AHRRPVHAWVESLRGFEQERVGLAELHPDVFATAPRLDILHQVATWQKNFKRISYAKTKT 116
Query: 109 TNEVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEE 168
EV GRKPW QKG G R L+ G G
Sbjct: 117 RAEVSGGGRKPWQQKGSGRARHGSIRSPLWRGGGVAHGPR-------------------- 156
Query: 169 ITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEER 228
P +LP+ V +GL + L++KLMQDDLHIV L LP DP+YL L + R
Sbjct: 157 -----GPTSYYYMLPMKVR-ALGLKAALTVKLMQDDLHIVDSLELPTADPQYLTELAQYR 210
Query: 229 CWGPSVLFVDNT-DYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIE 285
WG SVL VD T + +N+ T ++K +N++PA G N +MLKH TLV+T+ ++ +E
Sbjct: 211 HWGSSVLLVDLTHEEAPKNVVAATSRLKSFNLIPAVGLNVYSMLKHQTLVLTLPSIAFLE 270
Query: 286 DKLL 289
DKLL
Sbjct: 271 DKLL 274
>gi|355703125|gb|EHH29616.1| hypothetical protein EGK_10089 [Macaca mulatta]
Length = 296
Score = 163 bits (413), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 97/244 (39%), Positives = 127/244 (52%), Gaps = 29/244 (11%)
Query: 49 AFLQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKV 108
A +P QAWVE+L E++ G +LHPD+F PRLD++ WQK +K + + TK
Sbjct: 59 AHRRPVQAWVESLRGFEQERVGLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKT 118
Query: 109 TNEVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEE 168
EV GRKPWPQKG G R L+ G G
Sbjct: 119 RAEVRGGGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPR-------------------- 158
Query: 169 ITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEER 228
P +LP+ V +GL LSIKL QDDLHI+ L LP DP+YL L R
Sbjct: 159 -----GPTSYYYMLPMKVR-ALGLKVALSIKLAQDDLHIMDSLELPTRDPQYLTELARYR 212
Query: 229 CWGPSVLFVDNT-DYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIE 285
WG SVL VD T + M ++I T ++K +N++PA G N +MLKH TLV+T+ + +E
Sbjct: 213 RWGDSVLLVDLTYEEMPQSIVEATSRLKTFNLIPAVGLNVHSMLKHQTLVLTLPTIAFLE 272
Query: 286 DKLL 289
DKLL
Sbjct: 273 DKLL 276
>gi|355755440|gb|EHH59187.1| hypothetical protein EGM_09241 [Macaca fascicularis]
Length = 296
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 97/244 (39%), Positives = 127/244 (52%), Gaps = 29/244 (11%)
Query: 49 AFLQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKV 108
A +P QAWVE+L E++ G +LHPD+F PRLD++ WQK +K + + TK
Sbjct: 59 AHRRPVQAWVESLRGFEQERVGLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKT 118
Query: 109 TNEVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEE 168
EV GRKPWPQKG G R L+ G G
Sbjct: 119 RAEVRGGGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPR-------------------- 158
Query: 169 ITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEER 228
P +LP+ V +GL LSIKL QDDLHI+ L LP DP+YL L R
Sbjct: 159 -----GPTSYYYMLPMKVR-ALGLKVALSIKLAQDDLHIMDSLELPTRDPQYLTELARYR 212
Query: 229 CWGPSVLFVDNT-DYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIE 285
WG SVL VD T + M ++I T ++K +N++PA G N +MLKH TLV+T+ + +E
Sbjct: 213 RWGDSVLLVDLTYEEMPQSIVEATSRLKTFNLIPAVGLNVHSMLKHQTLVLTLPTIAFLE 272
Query: 286 DKLL 289
DKLL
Sbjct: 273 DKLL 276
>gi|297703540|ref|XP_002828694.1| PREDICTED: 39S ribosomal protein L4, mitochondrial [Pongo abelii]
Length = 311
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 95/244 (38%), Positives = 128/244 (52%), Gaps = 29/244 (11%)
Query: 49 AFLQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKV 108
A +P QAWVE+L E++ G +LHPD+F + PRLD++ WQK +K + + TK
Sbjct: 57 AHRRPVQAWVESLRGFEQERVGLADLHPDVFAIAPRLDILHQVAMWQKNFKRISYAKTKT 116
Query: 109 TNEVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEE 168
EV GRKPWPQKG G R L+ G G
Sbjct: 117 RAEVRGGGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPR-------------------- 156
Query: 169 ITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEER 228
P +LP+ V +GL L++KL QDDLHI+ L LP DP+YL L R
Sbjct: 157 -----GPTSYYYMLPMKVR-ALGLKMALTVKLAQDDLHIMDSLELPTGDPQYLTELAHYR 210
Query: 229 CWGPSVLFVDNT-DYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIE 285
WG SVL VD T + M ++I T ++K +N++PA G N +MLKH TLV+T+ + +E
Sbjct: 211 RWGDSVLLVDLTHEEMPQSIVEATSRLKTFNLIPAVGLNVHSMLKHQTLVLTLPTVAFLE 270
Query: 286 DKLL 289
DKLL
Sbjct: 271 DKLL 274
>gi|22478084|gb|AAH37064.1| Mrpl4 protein, partial [Mus musculus]
Length = 306
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 126/241 (52%), Gaps = 29/241 (12%)
Query: 52 QPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNE 111
+P QAWVE+L E++ G LHPD+F PRLD++ WQ+ ++ + + +TK E
Sbjct: 72 RPVQAWVESLRGFEQERIGLAELHPDVFATAPRLDIVHQVAIWQRNFRRISYANTKTRAE 131
Query: 112 VERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITA 171
V GRKPW QKG G R L+ G G
Sbjct: 132 VSGGGRKPWQQKGSGRARHGSIRSPLWRGGGVAHGPR----------------------- 168
Query: 172 TLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWG 231
P +LP+ V +GL L++KLMQDDLHIV L LP DP+YL L + R WG
Sbjct: 169 --GPTSYYYMLPMKVR-ALGLKVALTVKLMQDDLHIVDSLELPTADPQYLTELAQYRHWG 225
Query: 232 PSVLFVDNT-DYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKL 288
SVL VD T + M +N+ T + +N++PA G N +MLKH TLV+T+ ++ +EDKL
Sbjct: 226 SSVLLVDLTHEEMPKNVVAATSGLNSFNLIPAVGLNVYSMLKHQTLVLTLPSVAFLEDKL 285
Query: 289 L 289
L
Sbjct: 286 L 286
>gi|119508437|ref|NP_075656.2| 39S ribosomal protein L4, mitochondrial [Mus musculus]
gi|81881827|sp|Q9DCU6.1|RM04_MOUSE RecName: Full=39S ribosomal protein L4, mitochondrial; Short=L4mt;
Short=MRP-L4
gi|12832465|dbj|BAB22118.1| unnamed protein product [Mus musculus]
gi|13559359|dbj|BAB40839.1| mitochondrial ribosomal protein L4 (L4mt) [Mus musculus]
gi|37572295|gb|AAH39983.2| Mitochondrial ribosomal protein L4 [Mus musculus]
gi|38511681|gb|AAH61095.1| Mitochondrial ribosomal protein L4 [Mus musculus]
gi|148693202|gb|EDL25149.1| mitochondrial ribosomal protein L4, isoform CRA_c [Mus musculus]
Length = 294
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 126/241 (52%), Gaps = 29/241 (12%)
Query: 52 QPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNE 111
+P QAWVE+L E++ G LHPD+F PRLD++ WQ+ ++ + + +TK E
Sbjct: 60 RPVQAWVESLRGFEQERIGLAELHPDVFATAPRLDIVHQVAIWQRNFRRISYANTKTRAE 119
Query: 112 VERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITA 171
V GRKPW QKG G R L+ G G
Sbjct: 120 VSGGGRKPWQQKGSGRARHGSIRSPLWRGGGVAHGPR----------------------- 156
Query: 172 TLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWG 231
P +LP+ V +GL L++KLMQDDLHIV L LP DP+YL L + R WG
Sbjct: 157 --GPTSYYYMLPMKVR-ALGLKVALTVKLMQDDLHIVDSLELPTADPQYLTELAQYRHWG 213
Query: 232 PSVLFVDNT-DYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKL 288
SVL VD T + M +N+ T + +N++PA G N +MLKH TLV+T+ ++ +EDKL
Sbjct: 214 SSVLLVDLTHEEMPKNVVAATSGLNSFNLIPAVGLNVYSMLKHQTLVLTLPSVAFLEDKL 273
Query: 289 L 289
L
Sbjct: 274 L 274
>gi|397476516|ref|XP_003809645.1| PREDICTED: 39S ribosomal protein L4, mitochondrial [Pan paniscus]
Length = 311
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 95/241 (39%), Positives = 127/241 (52%), Gaps = 29/241 (12%)
Query: 52 QPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNE 111
+P QAWVE+L E++ G +LHPD+F PRLD++ WQK +K + + TK E
Sbjct: 60 RPVQAWVESLRGFEQERVGLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAE 119
Query: 112 VERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITA 171
V GRKPWPQKG G R L+ G G
Sbjct: 120 VRGGGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPR----------------------- 156
Query: 172 TLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWG 231
P +LP+ V V+GL L++KL QDDLHI+ L LP DP+YL L R WG
Sbjct: 157 --GPTSYYYMLPMKVR-VLGLKVALTVKLAQDDLHIMDSLELPTGDPQYLTELAHYRRWG 213
Query: 232 PSVLFVDNT-DYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKL 288
SVL VD T + M ++I T ++K +N++PA G N +MLKH TLV+T+ + +EDKL
Sbjct: 214 DSVLLVDLTHEEMPQSIVEATSRLKTFNLIPAVGLNVHSMLKHQTLVLTLPTVAFLEDKL 273
Query: 289 L 289
L
Sbjct: 274 L 274
>gi|157816923|ref|NP_001102224.1| 39S ribosomal protein L4, mitochondrial [Rattus norvegicus]
gi|149020531|gb|EDL78336.1| mitochondrial ribosomal protein L4 (predicted), isoform CRA_b
[Rattus norvegicus]
Length = 294
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 126/241 (52%), Gaps = 29/241 (12%)
Query: 52 QPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNE 111
+P QAWVE+L E++ G LHPD+F PRLD++ WQ+ +K + + TK E
Sbjct: 60 RPVQAWVESLRGFEQERIGLAELHPDVFATTPRLDILHQVAVWQRNFKRISYAKTKTRAE 119
Query: 112 VERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITA 171
V GRKPW QKG G R ++ G G
Sbjct: 120 VSGGGRKPWQQKGSGRARHGSIRSPIWRGGGVAHGPR----------------------- 156
Query: 172 TLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWG 231
P +LP+ V +GL L++KLMQDDLHIV L LP DP+YL L + R WG
Sbjct: 157 --GPTSYYYMLPMKVR-ALGLKVALTVKLMQDDLHIVDSLELPTADPQYLTELAQYRHWG 213
Query: 232 PSVLFVDNT-DYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKL 288
SVL VD T + M +N+ T ++ +N++PA G N +MLKH TLV+T+ ++ +EDKL
Sbjct: 214 SSVLLVDLTHEEMPKNVMAATSRLNSFNLIPAVGLNVYSMLKHQTLVLTLPSVAFLEDKL 273
Query: 289 L 289
L
Sbjct: 274 L 274
>gi|22547136|ref|NP_057040.2| 39S ribosomal protein L4, mitochondrial isoform a [Homo sapiens]
gi|22547138|ref|NP_666499.1| 39S ribosomal protein L4, mitochondrial isoform a [Homo sapiens]
gi|74733471|sp|Q9BYD3.1|RM04_HUMAN RecName: Full=39S ribosomal protein L4, mitochondrial; Short=L4mt;
Short=MRP-L4
gi|13559361|dbj|BAB40840.1| mitochondrial ribosomal protein L4 (L4mt) [Homo sapiens]
gi|14602670|gb|AAH09858.1| Mitochondrial ribosomal protein L4 [Homo sapiens]
gi|119604489|gb|EAW84083.1| mitochondrial ribosomal protein L4, isoform CRA_a [Homo sapiens]
gi|119604490|gb|EAW84084.1| mitochondrial ribosomal protein L4, isoform CRA_a [Homo sapiens]
Length = 311
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 94/241 (39%), Positives = 126/241 (52%), Gaps = 29/241 (12%)
Query: 52 QPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNE 111
+P QAWVE+L E++ G +LHPD+F PRLD++ WQK +K + + TK E
Sbjct: 60 RPVQAWVESLRGFEQERVGLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAE 119
Query: 112 VERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITA 171
V GRKPWPQKG G R L+ G G
Sbjct: 120 VRGGGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPR----------------------- 156
Query: 172 TLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWG 231
P +LP+ V +GL L++KL QDDLHI+ L LP DP+YL L R WG
Sbjct: 157 --GPTSYYYMLPMKVR-ALGLKVALTVKLAQDDLHIMDSLELPTGDPQYLTELAHYRRWG 213
Query: 232 PSVLFVDNT-DYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKL 288
SVL VD T + M ++I T ++K +N++PA G N +MLKH TLV+T+ + +EDKL
Sbjct: 214 DSVLLVDLTHEEMPQSIVEATSRLKTFNLIPAVGLNVHSMLKHQTLVLTLPTVAFLEDKL 273
Query: 289 L 289
L
Sbjct: 274 L 274
>gi|390478528|ref|XP_003735529.1| PREDICTED: LOW QUALITY PROTEIN: 39S ribosomal protein L4,
mitochondrial [Callithrix jacchus]
Length = 317
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 94/243 (38%), Positives = 127/243 (52%), Gaps = 29/243 (11%)
Query: 50 FLQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVT 109
F +P QAWVE+L E++H G +LHPD+F PRLD++ WQK +K + + TK
Sbjct: 58 FRRPVQAWVESLRGFEQEHVGLADLHPDVFATAPRLDILHQVAIWQKNFKRISYAKTKTR 117
Query: 110 NEVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEI 169
EV GRKPWPQKG G R L+ G G
Sbjct: 118 AEVRGGGRKPWPQKGSGRARHGSIRSPLWRGGGVAHGPR--------------------- 156
Query: 170 TATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERC 229
P +LP+ V +GL L++KL QDDLHIV L LP DP+YL +L R
Sbjct: 157 ----GPTSYYYMLPMKVR-ALGLKVALTVKLAQDDLHIVDSLELPTPDPQYLTDLARYRR 211
Query: 230 WGPSVLFVDNT-DYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIED 286
WG SVL V+ T + M ++I ++K + ++PA G N +MLKH TLV+T+ + +ED
Sbjct: 212 WGDSVLLVNLTHEEMPQSIVEAASRLKTFTLIPAVGLNVYSMLKHQTLVLTLPTIAFLED 271
Query: 287 KLL 289
KLL
Sbjct: 272 KLL 274
>gi|403296178|ref|XP_003938995.1| PREDICTED: 39S ribosomal protein L4, mitochondrial [Saimiri
boliviensis boliviensis]
Length = 294
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 95/244 (38%), Positives = 128/244 (52%), Gaps = 29/244 (11%)
Query: 49 AFLQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKV 108
AF +P QAWVE+L E++ G +LHPD+F PRLD++ WQK +K + + TK
Sbjct: 57 AFRRPVQAWVESLRGFEQERVGLADLHPDVFATAPRLDILHQVAVWQKNFKRISYAKTKT 116
Query: 109 TNEVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEE 168
EV GRKPWPQKG G R ++ G G
Sbjct: 117 RAEVRGGGRKPWPQKGSGRARHGSIRSPIWRGGGVAHGPR-------------------- 156
Query: 169 ITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEER 228
P +LP+ V +GL L++KL QDDLHIV L LP DP+YL +L R
Sbjct: 157 -----GPTSYYYMLPMKVR-ALGLKVALTVKLAQDDLHIVDSLELPTPDPQYLTDLACYR 210
Query: 229 CWGPSVLFVDNT-DYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIE 285
WG SVL V+ T + M +NI T ++K + ++PA G N +MLKH TLV+T+ + +E
Sbjct: 211 RWGDSVLLVNLTHEEMPQNIVEATSRLKTFTLIPAVGLNVYSMLKHQTLVLTLPTIAFLE 270
Query: 286 DKLL 289
DKLL
Sbjct: 271 DKLL 274
>gi|332852922|ref|XP_001164062.2| PREDICTED: 39S ribosomal protein L4, mitochondrial isoform 5 [Pan
troglodytes]
gi|410206720|gb|JAA00579.1| mitochondrial ribosomal protein L4 [Pan troglodytes]
gi|410253658|gb|JAA14796.1| mitochondrial ribosomal protein L4 [Pan troglodytes]
gi|410305182|gb|JAA31191.1| mitochondrial ribosomal protein L4 [Pan troglodytes]
gi|410332115|gb|JAA35004.1| mitochondrial ribosomal protein L4 [Pan troglodytes]
Length = 311
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 94/241 (39%), Positives = 126/241 (52%), Gaps = 29/241 (12%)
Query: 52 QPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNE 111
+P QAWVE+L E++ G +LHPD+F PRLD++ WQK +K + + TK E
Sbjct: 60 RPVQAWVESLRGFEQERVGLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAE 119
Query: 112 VERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITA 171
V GRKPWPQKG G R L+ G G
Sbjct: 120 VRGGGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPR----------------------- 156
Query: 172 TLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWG 231
P +LP+ V +GL L++KL QDDLHI+ L LP DP+YL L R WG
Sbjct: 157 --GPTSYYYMLPMKVR-ALGLKVALTVKLAQDDLHIMDSLELPTGDPQYLTELAHYRRWG 213
Query: 232 PSVLFVDNT-DYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKL 288
SVL VD T + M ++I T ++K +N++PA G N +MLKH TLV+T+ + +EDKL
Sbjct: 214 DSVLLVDLTHEEMPQSIVEATSRLKTFNLIPAVGLNVHSMLKHQTLVLTLPTVAFLEDKL 273
Query: 289 L 289
L
Sbjct: 274 L 274
>gi|334326371|ref|XP_001367717.2| PREDICTED: 39S ribosomal protein L4, mitochondrial-like
[Monodelphis domestica]
Length = 293
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 94/239 (39%), Positives = 124/239 (51%), Gaps = 28/239 (11%)
Query: 53 PRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEV 112
P QAWVE+L E+ G +LHPD+F + PRLD++ WQK +K + + TK EV
Sbjct: 61 PVQAWVESLQGYEKTRVGLADLHPDVFAVAPRLDILHDVAMWQKNFKRISYAKTKTRAEV 120
Query: 113 ERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITAT 172
GRKPW QKG G R ++ G G
Sbjct: 121 RGGGRKPWRQKGSGRARHGSIRSPIWRGGGVAHGPR------------------------ 156
Query: 173 LNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGP 232
P +LP+ V V+GL L++KLMQDDLHIV L LP DP+YL +LV R WG
Sbjct: 157 -GPTSYYYMLPMKVR-VLGLKVALTVKLMQDDLHIVDSLELPTSDPRYLLDLVRHRYWGD 214
Query: 233 SVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLL 289
SVL VD + M +NI +K N++PA G N +MLKH TLV+T++ + +E KLL
Sbjct: 215 SVLLVDVDEEMPQNIVSAVSNLKTINLVPAVGLNVHSMLKHQTLVLTLNTVAFLEKKLL 273
>gi|301772042|ref|XP_002921423.1| PREDICTED: 39S ribosomal protein L4, mitochondrial-like [Ailuropoda
melanoleuca]
gi|281337408|gb|EFB12992.1| hypothetical protein PANDA_010325 [Ailuropoda melanoleuca]
Length = 294
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 95/260 (36%), Positives = 129/260 (49%), Gaps = 29/260 (11%)
Query: 33 TSNKSEILHETKEFQNAFLQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNI 92
++ +L + A +P QAWVE+L E++ G LHP++F + PRLD++ +
Sbjct: 41 AGPRAPVLRRCELPVPAPRRPVQAWVESLRGYEQERVGLAELHPEVFSIAPRLDILHQVV 100
Query: 93 EWQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEE 152
WQK +K + + TK EV GRKPWPQKG G R ++ G G
Sbjct: 101 TWQKNFKRISYAKTKTRAEVRGGGRKPWPQKGSGRSRHGSIRSPIWRGGGIAHGPR---- 156
Query: 153 EEEEEEEEEEEEEEEEITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLV 212
P +LP+ V V GL L++KL QDDLHIV L
Sbjct: 157 ---------------------GPTSYYYMLPMKVR-VQGLKVALTVKLAQDDLHIVDSLE 194
Query: 213 LPVDDPKYLENLVEERCWGPSVLFVD-NTDYMERNISIVTDQIKHYNIMPAYGEN--NML 269
LP DP+YL L R WG SVL VD D M +NI +K +N++PA G N +ML
Sbjct: 195 LPTSDPQYLTELARYRRWGDSVLLVDLAHDDMPQNIVAAASGLKTFNLIPAVGLNVYSML 254
Query: 270 KHDTLVITVDALKQIEDKLL 289
KH TLV+T+ + +E KLL
Sbjct: 255 KHQTLVLTLQTVAFLEQKLL 274
>gi|73986986|ref|XP_854013.1| PREDICTED: 39S ribosomal protein L4, mitochondrial [Canis lupus
familiaris]
Length = 294
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 93/241 (38%), Positives = 124/241 (51%), Gaps = 29/241 (12%)
Query: 52 QPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNE 111
+P QAWVE+L E++ G LHP++F PRLD++ WQ+ +K + + TK E
Sbjct: 60 RPVQAWVESLRGYEQERVGLAELHPEVFSTAPRLDILHQVAIWQRNFKRISYAKTKTRAE 119
Query: 112 VERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITA 171
V+ GRKPWPQKG G R ++ G G
Sbjct: 120 VQGGGRKPWPQKGSGRSRHGSIRSPIWRGGGIAHGPR----------------------- 156
Query: 172 TLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWG 231
P +LP+ V V GL L++KL QDDLHIV L LP DP+YL L R WG
Sbjct: 157 --GPTSYYYMLPMKVR-VQGLKVALTVKLAQDDLHIVDSLELPTSDPQYLTELARYRHWG 213
Query: 232 PSVLFVD-NTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKL 288
SVL VD + M +NI T +K +N++PA G N +MLKH TLV+T+ L +E+KL
Sbjct: 214 DSVLLVDLAYENMPQNIVAATTGLKTFNLIPAVGLNVYSMLKHQTLVLTLQTLAFLEEKL 273
Query: 289 L 289
L
Sbjct: 274 L 274
>gi|431918988|gb|ELK17855.1| 39S ribosomal protein L4, mitochondrial [Pteropus alecto]
Length = 294
Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 96/260 (36%), Positives = 131/260 (50%), Gaps = 29/260 (11%)
Query: 33 TSNKSEILHETKEFQNAFLQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNI 92
++ +L + + +A +P QAWVE+L E++ G LHPD+F PRLD++
Sbjct: 41 AGPQAPVLRKCELPVSAHRRPVQAWVESLRGYEQERVGLAELHPDVFSTAPRLDILHQVA 100
Query: 93 EWQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEE 152
WQK +K + + TK EV GRKPWPQKG G R L+ G G
Sbjct: 101 IWQKNFKRISYAKTKTRAEVRGGGRKPWPQKGSGRARHGSIRSPLWRGGGVAHGPR---- 156
Query: 153 EEEEEEEEEEEEEEEEITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLV 212
P +LP+ V V GL L++KL QD+LHIV L
Sbjct: 157 ---------------------GPTSYYYMLPMKVR-VQGLKVALTVKLAQDNLHIVDSLE 194
Query: 213 LPVDDPKYLENLVEERCWGPSVLFVD-NTDYMERNISIVTDQIKHYNIMPAYGEN--NML 269
LP DP+YL L R WG SVL VD + M +NI T +K +N++PA G N +ML
Sbjct: 195 LPTADPQYLTELACYRRWGDSVLLVDLAYEDMPQNIVAATSGLKTFNLVPAVGLNVHSML 254
Query: 270 KHDTLVITVDALKQIEDKLL 289
KH TLV+T+ + +E+KLL
Sbjct: 255 KHQTLVLTLQTVAFLEEKLL 274
>gi|444525512|gb|ELV14059.1| 39S ribosomal protein L4, mitochondrial [Tupaia chinensis]
Length = 294
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 98/272 (36%), Positives = 138/272 (50%), Gaps = 34/272 (12%)
Query: 36 KSEILHETKEFQNAFLQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQ 95
++ +L + + +A +P QAWVE+L E++ G LHPD+F PRLD++ WQ
Sbjct: 44 QAPVLRKCELPVSAHQRPVQAWVESLRGYEQERVGLAELHPDVFATAPRLDILHQVAIWQ 103
Query: 96 KKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEE 155
K +K + + TK EV GRKPWPQKG G R ++ G G
Sbjct: 104 KNFKRISYAKTKTRAEVRGGGRKPWPQKGGGRARHGSIRSPIWRGGGIAHGPR------- 156
Query: 156 EEEEEEEEEEEEEITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPV 215
P +LP+ V +GL LS+KL QD+LHIV L LP
Sbjct: 157 ------------------GPTSYYYMLPMKVR-ALGLKVALSVKLAQDNLHIVDSLELPT 197
Query: 216 DDPKYLENLVEERCWGPSVLFVDNT-DYMERNISIVTDQIKHYNIMPAYGEN--NMLKHD 272
DP+YL L R WG SVL VD T + M +NI T ++K N++PA G N +MLKH
Sbjct: 198 PDPQYLSELAHFRRWGDSVLLVDLTHEDMPQNIVEATARLKTINLIPAVGLNAHSMLKHQ 257
Query: 273 TLVITVDALKQIEDKLLLALNRSDNERFTSRF 304
TLV+T+ + +E+KLL + R+T+ +
Sbjct: 258 TLVLTLPTVAFLEEKLLW-----QDSRYTALY 284
>gi|417398496|gb|JAA46281.1| Putative 39s ribosomal protein l4 [Desmodus rotundus]
Length = 294
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 126/244 (51%), Gaps = 29/244 (11%)
Query: 49 AFLQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKV 108
A +P QAW+E+L E++ G LHPD+F VPRLD++ WQK YK + + TK
Sbjct: 57 AHRRPVQAWIESLRGYEQERVGLAELHPDVFSTVPRLDILHQVTIWQKNYKRISYAKTKT 116
Query: 109 TNEVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEE 168
EV GRKPWPQKG G R ++ G G
Sbjct: 117 RAEVRGGGRKPWPQKGSGRARHGSIRSPIWRGGGVAHGPR-------------------- 156
Query: 169 ITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEER 228
P +LP+ V V GL L++KL QD+LHIV L LP DP+YL+ L R
Sbjct: 157 -----GPTSYYYMLPMKVR-VQGLKVALTVKLAQDNLHIVDSLELPTADPQYLKELACYR 210
Query: 229 CWGPSVLFVD-NTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIE 285
WG SVL VD + M +NI ++K +N++PA G N +MLKH TLV+T+ + +E
Sbjct: 211 RWGDSVLLVDLAHEDMPQNIVTAASELKTFNLVPAVGLNVHSMLKHQTLVLTLQTVAFLE 270
Query: 286 DKLL 289
+KLL
Sbjct: 271 EKLL 274
>gi|355704354|gb|AES02199.1| mitochondrial ribosomal protein L4 [Mustela putorius furo]
Length = 294
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 90/241 (37%), Positives = 122/241 (50%), Gaps = 29/241 (12%)
Query: 52 QPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNE 111
+P QAWVE+L E++ G LHP++F PRLD++ WQ+ +K + + TK E
Sbjct: 60 RPVQAWVESLRGYEQERVGLAELHPEVFSTAPRLDILHQVAIWQRNFKRISYAKTKTRAE 119
Query: 112 VERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITA 171
V GRKPWPQKG G R ++ G G
Sbjct: 120 VRGGGRKPWPQKGSGRSRQGSIRSPIWRGGGIAHGPR----------------------- 156
Query: 172 TLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWG 231
P +LP+ V V GL L++KL QDDLH+V L LP DP+YL L R WG
Sbjct: 157 --GPTSYYYMLPMKVR-VQGLKVALTVKLAQDDLHVVDSLELPTSDPQYLTELARYRRWG 213
Query: 232 PSVLFVD-NTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKL 288
SVL VD + M +N+ T +K +N++PA G N +MLKH TLV+T+ + +E KL
Sbjct: 214 DSVLLVDLAYEDMPQNVVAATSSLKTFNLIPAVGLNVYSMLKHQTLVLTLQTIAFLEKKL 273
Query: 289 L 289
L
Sbjct: 274 L 274
>gi|225711982|gb|ACO11837.1| Mitochondrial 39S ribosomal protein L4 [Lepeophtheirus salmonis]
gi|290562960|gb|ADD38874.1| 39S ribosomal protein L4, mitochondrial [Lepeophtheirus salmonis]
Length = 275
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 94/249 (37%), Positives = 134/249 (53%), Gaps = 31/249 (12%)
Query: 53 PRQAWVENLDTTEEKHFG--FVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTN 110
PRQ W+E+L + V+LHPD++G+ PRLD+I N++WQ+ YK V +++ K
Sbjct: 38 PRQCWIESLKRSSSTGSAGQIVDLHPDVWGVAPRLDIIADNLKWQENYKKVEYNYVKDRY 97
Query: 111 EVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEIT 170
E+ G +PWPQKG TG+ K + + + +
Sbjct: 98 ELPGKGARPWPQKG--------------TGRARHKSKRSPIWLQGGKAHGPK-------- 135
Query: 171 ATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLV-LPVDDPKYLENLVEERC 229
P +LP H V GL TLS+K QDD+ IV++ L DP+ LE+L+ ER
Sbjct: 136 ---GPKTNFFMLPYQ-HRVNGLIHTLSVKFAQDDIIIVQNFDDLESTDPEDLEDLISERG 191
Query: 230 WGPSVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDK 287
WG S LFV+ NI+ ++ I H N+MP++G N +MLKH TLV+T+DA+ IEDK
Sbjct: 192 WGLSTLFVNGDSIAPENITAASESILHVNVMPSFGLNVHSMLKHKTLVLTLDAVNLIEDK 251
Query: 288 LLLALNRSD 296
LL A RSD
Sbjct: 252 LLFAQRRSD 260
>gi|148693203|gb|EDL25150.1| mitochondrial ribosomal protein L4, isoform CRA_d [Mus musculus]
Length = 302
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 92/249 (36%), Positives = 126/249 (50%), Gaps = 37/249 (14%)
Query: 52 QPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPR--------LDVITMNIEWQKKYKWVRF 103
+P QAWVE+L E++ G LHPD+F PR LD++ WQ+ ++ + +
Sbjct: 60 RPVQAWVESLRGFEQERIGLAELHPDVFATAPRWSLTMKYRLDIVHQVAIWQRNFRRISY 119
Query: 104 DHTKVTNEVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEE 163
+TK EV GRKPW QKG G R L+ G G
Sbjct: 120 ANTKTRAEVSGGGRKPWQQKGSGRARHGSIRSPLWRGGGVAHGPR--------------- 164
Query: 164 EEEEEITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLEN 223
P +LP+ V +GL L++KLMQDDLHIV L LP DP+YL
Sbjct: 165 ----------GPTSYYYMLPMKVR-ALGLKVALTVKLMQDDLHIVDSLELPTADPQYLTE 213
Query: 224 LVEERCWGPSVLFVDNT-DYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDA 280
L + R WG SVL VD T + M +N+ T + +N++PA G N +MLKH TLV+T+ +
Sbjct: 214 LAQYRHWGSSVLLVDLTHEEMPKNVVAATSGLNSFNLIPAVGLNVYSMLKHQTLVLTLPS 273
Query: 281 LKQIEDKLL 289
+ +EDKLL
Sbjct: 274 VAFLEDKLL 282
>gi|440891545|gb|ELR45161.1| 39S ribosomal protein L4, mitochondrial [Bos grunniens mutus]
Length = 294
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 93/241 (38%), Positives = 123/241 (51%), Gaps = 29/241 (12%)
Query: 52 QPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNE 111
+P QAWVE+L E++ G LHPD+F PRLD++ WQK +K + + TK E
Sbjct: 60 RPVQAWVESLRGYEQERVGLTELHPDVFSTAPRLDILHQVAIWQKNFKRISYAKTKTRAE 119
Query: 112 VERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITA 171
V GRKPW QKG G R ++ G G
Sbjct: 120 VRGGGRKPWQQKGSGRARHGSIRSPIWRGGGVAHGPR----------------------- 156
Query: 172 TLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWG 231
P +LP+ V V GL L++KL QDDLHIV L LP DP+YL L R WG
Sbjct: 157 --GPTSYYYMLPMKVR-VQGLKVALTVKLAQDDLHIVDSLELPTTDPQYLTELARCRRWG 213
Query: 232 PSVLFVD-NTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKL 288
SVLFVD + M +N+ T +K +N++PA G N +MLKH TLV+T+ + +E+KL
Sbjct: 214 DSVLFVDLEHEDMPQNVVAATSGLKTFNLIPAIGLNVHSMLKHQTLVLTLPTVAFLEEKL 273
Query: 289 L 289
L
Sbjct: 274 L 274
>gi|82697333|ref|NP_001032527.1| 39S ribosomal protein L4, mitochondrial [Bos taurus]
gi|108864722|sp|Q32PI6.1|RM04_BOVIN RecName: Full=39S ribosomal protein L4, mitochondrial; Short=L4mt;
Short=MRP-L4
gi|81294225|gb|AAI08103.1| Mitochondrial ribosomal protein L4 [Bos taurus]
gi|296485803|tpg|DAA27918.1| TPA: 39S ribosomal protein L4, mitochondrial [Bos taurus]
Length = 294
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 93/241 (38%), Positives = 123/241 (51%), Gaps = 29/241 (12%)
Query: 52 QPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNE 111
+P QAWVE+L E++ G LHPD+F PRLD++ WQK +K + + TK E
Sbjct: 60 RPVQAWVESLRGYEQERVGLTELHPDVFSTAPRLDILHQVAIWQKNFKRISYAKTKTRAE 119
Query: 112 VERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITA 171
V GRKPW QKG G R ++ G G
Sbjct: 120 VRGGGRKPWQQKGSGRARHGSIRSPIWRGGGVAHGPR----------------------- 156
Query: 172 TLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWG 231
P +LP+ V V GL L++KL QDDLHIV L LP DP+YL L R WG
Sbjct: 157 --GPTSYYYMLPMKVR-VQGLKVALTVKLAQDDLHIVDSLELPTTDPQYLMELARYRRWG 213
Query: 232 PSVLFVD-NTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKL 288
SVLFVD + M +N+ T +K +N++PA G N +MLKH TLV+T+ + +E+KL
Sbjct: 214 DSVLFVDLEHEDMPQNVVAATSGLKTFNLIPAIGLNVHSMLKHQTLVLTLPTVAFLEEKL 273
Query: 289 L 289
L
Sbjct: 274 L 274
>gi|149020530|gb|EDL78335.1| mitochondrial ribosomal protein L4 (predicted), isoform CRA_a
[Rattus norvegicus]
Length = 302
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 92/249 (36%), Positives = 126/249 (50%), Gaps = 37/249 (14%)
Query: 52 QPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPR--------LDVITMNIEWQKKYKWVRF 103
+P QAWVE+L E++ G LHPD+F PR LD++ WQ+ +K + +
Sbjct: 60 RPVQAWVESLRGFEQERIGLAELHPDVFATTPRWSLTMKYKLDILHQVAVWQRNFKRISY 119
Query: 104 DHTKVTNEVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEE 163
TK EV GRKPW QKG G R ++ G G
Sbjct: 120 AKTKTRAEVSGGGRKPWQQKGSGRARHGSIRSPIWRGGGVAHGPR--------------- 164
Query: 164 EEEEEITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLEN 223
P +LP+ V +GL L++KLMQDDLHIV L LP DP+YL
Sbjct: 165 ----------GPTSYYYMLPMKVR-ALGLKVALTVKLMQDDLHIVDSLELPTADPQYLTE 213
Query: 224 LVEERCWGPSVLFVDNT-DYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDA 280
L + R WG SVL VD T + M +N+ T ++ +N++PA G N +MLKH TLV+T+ +
Sbjct: 214 LAQYRHWGSSVLLVDLTHEEMPKNVMAATSRLNSFNLIPAVGLNVYSMLKHQTLVLTLPS 273
Query: 281 LKQIEDKLL 289
+ +EDKLL
Sbjct: 274 VAFLEDKLL 282
>gi|348533363|ref|XP_003454175.1| PREDICTED: 39S ribosomal protein L4, mitochondrial-like
[Oreochromis niloticus]
Length = 302
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 97/255 (38%), Positives = 128/255 (50%), Gaps = 33/255 (12%)
Query: 49 AFLQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKV 108
A L P Q WVE+L+ + + G LHPD+F + PRLD++ WQ+ YK + HTKV
Sbjct: 66 AHLTPVQTWVESLERQDSEPLGVAQLHPDVFAVPPRLDILHSVETWQRNYKRISHAHTKV 125
Query: 109 TNEVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEE 168
+EV GRKPW QKG G R ++ G G
Sbjct: 126 RSEVSGGGRKPWKQKGSGRARHGSIRSPIWRGGGVSHGPR-------------------- 165
Query: 169 ITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEER 228
P +LP+ V V GL LS K QDDLHIV L +P D +YL +L+ R
Sbjct: 166 -----GPTSYYYMLPMKVR-VQGLKVALSSKKAQDDLHIVDSLNIPTPDSQYLLDLIRHR 219
Query: 229 CWGPSVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIED 286
WG SVL VD + NI T +K NI+PA G N +MLKH+ +V+T++ LK +ED
Sbjct: 220 HWGESVLIVDVGEDFSENILQATANLKTVNIIPAIGLNVHSMLKHEAIVLTLETLKFLED 279
Query: 287 KLLLALNRSDNERFT 301
KLL +ER+T
Sbjct: 280 KLLW-----HDERYT 289
>gi|351700425|gb|EHB03344.1| 39S ribosomal protein L4, mitochondrial [Heterocephalus glaber]
Length = 296
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 126/244 (51%), Gaps = 29/244 (11%)
Query: 49 AFLQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKV 108
A +P QAWVE+L E++ G LHPD+F PR+DV+ WQ+ +K + + TK
Sbjct: 59 AHRRPVQAWVESLRGYEQERVGLAELHPDVFATAPRVDVLHQVAIWQRNFKRISYAKTKT 118
Query: 109 TNEVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEE 168
EV GRKPW QKG G R ++ G G
Sbjct: 119 RAEVRGGGRKPWQQKGTGRARHGSIRSPIWRGGGVAHGPR-------------------- 158
Query: 169 ITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEER 228
P +LP+ V V+GL L++KL QDDLH+V L LP DP+YL L R
Sbjct: 159 -----GPKSYYYMLPMKVR-VLGLKVALTVKLAQDDLHVVDSLELPTADPQYLMELARHR 212
Query: 229 CWGPSVLFVDNT-DYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIE 285
WG SVL VD T + M +N+ T ++K +N++PA G N +MLKH TLV+T+ + +E
Sbjct: 213 HWGDSVLLVDLTHEEMPQNVVEATSRLKTFNLIPAVGLNVHSMLKHHTLVLTLPTVTFLE 272
Query: 286 DKLL 289
+KLL
Sbjct: 273 EKLL 276
>gi|348550164|ref|XP_003460902.1| PREDICTED: 39S ribosomal protein L4, mitochondrial-like [Cavia
porcellus]
Length = 296
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 93/244 (38%), Positives = 123/244 (50%), Gaps = 29/244 (11%)
Query: 49 AFLQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKV 108
A +P QAW+E+L E++ G LHPD+F PRLDV+ WQK +K + + TK
Sbjct: 59 AHRRPVQAWIESLRGYEQERVGLAELHPDVFATAPRLDVLHQVAIWQKNFKRISYAKTKT 118
Query: 109 TNEVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEE 168
EV GRKPW QKG G R ++ G G
Sbjct: 119 RAEVRGGGRKPWQQKGSGRARHGSIRSPIWRGGGIAHGPR-------------------- 158
Query: 169 ITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEER 228
P +LP+ V +GL L++KL QDDLH+V L LP DP+YL L R
Sbjct: 159 -----GPTSYYYMLPMKVR-ALGLKVALTVKLAQDDLHVVDSLELPTSDPQYLTELAHYR 212
Query: 229 CWGPSVLFVDNT-DYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIE 285
WG SVL VD T + M RNI T ++K N++PA G N +MLKH +LV+T+ + +E
Sbjct: 213 RWGDSVLLVDLTHEGMPRNIVEATSRLKTINLIPAVGLNVHSMLKHHSLVLTLPTVAFLE 272
Query: 286 DKLL 289
KLL
Sbjct: 273 KKLL 276
>gi|426228959|ref|XP_004008562.1| PREDICTED: 39S ribosomal protein L4, mitochondrial [Ovis aries]
Length = 288
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/238 (38%), Positives = 120/238 (50%), Gaps = 29/238 (12%)
Query: 55 QAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVER 114
QAWVE+L E++ G LHPD+F PRLD++ WQK +K + + TK EV
Sbjct: 57 QAWVESLRGYEQERVGLTELHPDVFSTAPRLDILHQVAIWQKNFKRISYAKTKTRAEVRG 116
Query: 115 TGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLN 174
GRKPW QKG G R ++ G G
Sbjct: 117 GGRKPWQQKGSGRARHGSIRSPIWRGGGIAHGPR-------------------------G 151
Query: 175 PCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSV 234
P +LP+ V V GL L++KL QDDLHIV L LP DP+YL L R WG SV
Sbjct: 152 PTSYYYMLPMKVR-VQGLKVALTVKLAQDDLHIVDSLELPTTDPQYLMELARHRRWGDSV 210
Query: 235 LFVD-NTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLL 289
LFVD + M +N T +K +N++PA G N +MLKH TLV+T+ + +E+KLL
Sbjct: 211 LFVDLEHEDMPQNAVAATSGLKTFNLIPAVGLNVHSMLKHQTLVLTLPTVAFLEEKLL 268
>gi|194213187|ref|XP_001493119.2| PREDICTED: 39S ribosomal protein L4, mitochondrial-like [Equus
caballus]
Length = 326
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 93/241 (38%), Positives = 122/241 (50%), Gaps = 29/241 (12%)
Query: 52 QPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNE 111
+P QAWVE+L E++ G LHPD+F PRLD++ WQK +K + + TK E
Sbjct: 92 RPVQAWVESLRGYEQERVGLTELHPDVFAAAPRLDILHQVAIWQKNFKRISYAKTKTRAE 151
Query: 112 VERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITA 171
V GRKPWPQKG G R ++ G G
Sbjct: 152 VRGGGRKPWPQKGSGRARHGSIRSPIWRGGGIAHGPR----------------------- 188
Query: 172 TLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWG 231
P +LP+ V V GL LS+KL QDDLH+V L LP +P+YL L R WG
Sbjct: 189 --GPTSYYYMLPMKVR-VQGLKVALSVKLAQDDLHVVDSLELPSAEPQYLAELARYRRWG 245
Query: 232 PSVLFVD-NTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKL 288
SVL VD + M +I T +K +N++PA G N +MLKH TLV+T+ + +EDKL
Sbjct: 246 DSVLLVDLEHEDMPPSIVAATSCLKTFNLVPAIGLNVHSMLKHQTLVLTLRTVAFLEDKL 305
Query: 289 L 289
L
Sbjct: 306 L 306
>gi|335282607|ref|XP_003123269.2| PREDICTED: 39S ribosomal protein L4, mitochondrial-like [Sus
scrofa]
Length = 294
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 95/259 (36%), Positives = 128/259 (49%), Gaps = 34/259 (13%)
Query: 49 AFLQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKV 108
A +P QAW+E+L E++ G LHPD+F PRLD++ WQK +K + + TK
Sbjct: 57 AHRRPVQAWIESLRGYEQERVGLTELHPDVFSTAPRLDILHQVAIWQKNFKRISYAKTKT 116
Query: 109 TNEVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEE 168
EV GRKPW QKG G R ++ G G
Sbjct: 117 RAEVRGGGRKPWVQKGSGRARHGSIRSPIWRGGGVAHGPR-------------------- 156
Query: 169 ITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEER 228
P +LP+ V V GL L++KL QDDLHIV L LP DP+YL L R
Sbjct: 157 -----GPTSYYYMLPMKVR-VQGLKVALTVKLAQDDLHIVDSLELPTADPQYLIELARYR 210
Query: 229 CWGPSVLFVD-NTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIE 285
WG SVL VD + M +N+ T +K +N++PA G N +MLKH TLV+T+ + +E
Sbjct: 211 RWGDSVLLVDLEHEDMPQNVVAATSGLKTFNLVPAVGLNVHSMLKHQTLVLTLPTVAFLE 270
Query: 286 DKLLLALNRSDNERFTSRF 304
+KLL N R+T +
Sbjct: 271 EKLLW-----HNSRYTPLY 284
>gi|432842972|ref|XP_004065529.1| PREDICTED: 39S ribosomal protein L4, mitochondrial-like [Oryzias
latipes]
Length = 302
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/243 (37%), Positives = 124/243 (51%), Gaps = 28/243 (11%)
Query: 49 AFLQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKV 108
A L P Q WVE+L + + G LHPD+FG+ PR+D++ +WQ+ YK + + HTKV
Sbjct: 66 AHLSPMQTWVESLQMEDGEPLGRAELHPDVFGVSPRIDILHDVEKWQRNYKRISYAHTKV 125
Query: 109 TNEVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEE 168
+EV G+KPW QKG G R L+ G G
Sbjct: 126 RSEVRGGGKKPWRQKGSGRARHGSIRSPLWRGGGVSHGPR-------------------- 165
Query: 169 ITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEER 228
P +LP+ V V GL LS K+ QD LH+V L +P D +YL +L+ R
Sbjct: 166 -----GPTSYYYMLPMKVR-VQGLKVALSFKMAQDYLHVVDSLHIPTPDSQYLLDLIRRR 219
Query: 229 CWGPSVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIED 286
WG SVL VD + NI +K N++PA G N +MLKH+ +V+T++ LK +ED
Sbjct: 220 HWGESVLIVDVAEEFPENILQAASDLKKVNLIPAIGLNVHSMLKHEAVVLTLETLKFLED 279
Query: 287 KLL 289
KLL
Sbjct: 280 KLL 282
>gi|344282767|ref|XP_003413144.1| PREDICTED: 39S ribosomal protein L4, mitochondrial-like [Loxodonta
africana]
Length = 294
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 91/244 (37%), Positives = 125/244 (51%), Gaps = 29/244 (11%)
Query: 49 AFLQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKV 108
A +P QAWVE+L +++ G LHPD+F PRLD++ WQK +K + + TK
Sbjct: 57 AHRRPMQAWVESLRGFDQERVGLAELHPDVFAAAPRLDILHQVAIWQKNFKRISYAKTKT 116
Query: 109 TNEVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEE 168
EV GRKPWPQKG G R ++ G G
Sbjct: 117 RAEVRGGGRKPWPQKGCGRARHGSIRSPIWRGGGIAHGPR-------------------- 156
Query: 169 ITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEER 228
P +LP+ V V+GL L++KL QD+LHIV L LP D +YL L + R
Sbjct: 157 -----GPTSYYYMLPMKVR-VLGLKVALTVKLAQDNLHIVDSLELPTPDSQYLTELAQYR 210
Query: 229 CWGPSVLFVD-NTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIE 285
WG SVL VD + M +N+ T +K +N++PA G N +MLKH TLV+T+ + +E
Sbjct: 211 RWGDSVLLVDLAHEEMPQNVVSSTSGLKTFNLIPAVGLNVHSMLKHQTLVLTLRTVDFLE 270
Query: 286 DKLL 289
+KLL
Sbjct: 271 EKLL 274
>gi|225717040|gb|ACO14366.1| Mitochondrial 39S ribosomal protein L4 [Esox lucius]
Length = 302
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 94/256 (36%), Positives = 131/256 (51%), Gaps = 33/256 (12%)
Query: 51 LQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTN 110
L P + WVE L + + G V+LHPDIF + R+D++ WQ+ +K + + HTKV +
Sbjct: 68 LSPVRTWVETLGKRDSEPLGLVDLHPDIFAVPARVDILHDVEMWQRSFKRISYAHTKVRS 127
Query: 111 EVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEIT 170
EV GRKPW QKG G R L+ G G
Sbjct: 128 EVRGGGRKPWKQKGSGRARHGSIRSPLWRGGGVSHGPR---------------------- 165
Query: 171 ATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCW 230
P +LP+ + V GL LS KL QD LH+V L +P DP+YL +L+ R W
Sbjct: 166 ---GPTSYYYMLPMKIR-VQGLKIALSSKLAQDYLHVVDTLNIPTPDPEYLMDLIRFRYW 221
Query: 231 GPSVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKL 288
G SVL VD + NI T+ +K N++PA G N +MLKH+ LV+T++A+K +E+KL
Sbjct: 222 GESVLIVDACEEFPENILQATESLKTVNVIPAIGLNVHSMLKHEVLVLTLEAVKFLENKL 281
Query: 289 LLALNRSDNERFTSRF 304
L NERF+ +
Sbjct: 282 LW-----HNERFSPLY 292
>gi|387017114|gb|AFJ50675.1| 39S ribosomal protein L4, mitochondrial-like [Crotalus adamanteus]
Length = 301
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 87/241 (36%), Positives = 122/241 (50%), Gaps = 29/241 (12%)
Query: 51 LQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTN 110
L+P Q W+E+L + +H G +LHPD+F ++PRLD++ WQK +K + + TK
Sbjct: 68 LKPVQTWIESLQHYDARHLGLADLHPDVFAVMPRLDILHAVAIWQKNFKRISYAKTKTRA 127
Query: 111 EVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEIT 170
E+ GRKPW QKG G R ++ G G
Sbjct: 128 EMHGGGRKPWRQKGSGRARHGSIRSPIWHGGGRAFGPR---------------------- 165
Query: 171 ATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCW 230
P +LP M V+GL L+ K MQ DLHIV L +P DP+YL +L R W
Sbjct: 166 ---GPTSYYYMLP-MKQRVLGLKVALTAKQMQGDLHIVDSLEMPTFDPQYLADLARYRHW 221
Query: 231 GPSVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKL 288
G S LFVD + E NI +K + ++PA G N +MLKH+TLV+T++ + +E KL
Sbjct: 222 GRSALFVDVGEIPE-NIQSAASGLKTFTVVPAIGLNVHSMLKHETLVLTLETISFLEKKL 280
Query: 289 L 289
L
Sbjct: 281 L 281
>gi|410929341|ref|XP_003978058.1| PREDICTED: 39S ribosomal protein L4, mitochondrial-like [Takifugu
rubripes]
Length = 302
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 91/253 (35%), Positives = 128/253 (50%), Gaps = 28/253 (11%)
Query: 39 ILHETKEFQNAFLQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKY 98
+L + A L Q WVE L+ + + G +LHPD+F + PRLD++ M WQ+ +
Sbjct: 56 VLRKCDAAIPAHLSHIQTWVETLEKEDSEPLGLAHLHPDVFAVPPRLDILHMVEIWQRNF 115
Query: 99 KWVRFDHTKVTNEVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEE 158
K + HTKV +EV G+KPW QKG G R L+ G G
Sbjct: 116 KRISHAHTKVRSEVRGGGKKPWRQKGSGRARHGSIRSPLWRGGGVSHGPR---------- 165
Query: 159 EEEEEEEEEEITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDP 218
P +LP+ V V GL LS K+ Q LH+V L +P DP
Sbjct: 166 ---------------GPTSYYYMLPMKVR-VQGLKVALSSKMSQSYLHVVDSLAIPTPDP 209
Query: 219 KYLENLVEERCWGPSVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVI 276
+YL +L+ R WG SVL VD ++ NI T +K NI+PA G N ++LKH+ +V+
Sbjct: 210 QYLRDLIGHRHWGQSVLIVDVSEEFPENILQATANLKTVNIIPAIGLNVHSLLKHEAIVL 269
Query: 277 TVDALKQIEDKLL 289
T++A+K +EDKLL
Sbjct: 270 TLEAIKFLEDKLL 282
>gi|390363081|ref|XP_792959.3| PREDICTED: 39S ribosomal protein L4, mitochondrial-like
[Strongylocentrotus purpuratus]
Length = 270
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 91/262 (34%), Positives = 129/262 (49%), Gaps = 34/262 (12%)
Query: 51 LQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTN 110
++P QAW+E +++ E+ G ++LHP +F PRLD++ N+ WQ+ YK + K
Sbjct: 14 VEPIQAWLETINSLEDNKLGLLDLHPHVFATFPRLDILHRNVLWQRNYKRISMAKAKSRA 73
Query: 111 EVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEIT 170
EV G+KPW QKG G R ++ G G+
Sbjct: 74 EVRGGGKKPWRQKGTGRARHGSTRSPIWIGGGKA-------------------------L 108
Query: 171 ATLNPCGLCRILP--VMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEER 228
P +LP + H GL L++K QDDLHIV L +P DP YL++L +ER
Sbjct: 109 GPRGPRSYWYVLPEKIRAH---GLRVALTVKYTQDDLHIVDSLDIPSADPGYLQDLCKER 165
Query: 229 CWGPSVLFVDNTDY--MERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQI 284
WG SVLFVD D M N + IK +N++ A G N +MLKH TLV+T+DA+ +
Sbjct: 166 YWGESVLFVDVQDVEEMPLNFLEAVNGIKTFNVLSAEGLNVYSMLKHKTLVLTLDAVNLL 225
Query: 285 EDKLLLALNRSDNERFTSRFVI 306
E +LL L + T I
Sbjct: 226 EQRLLHYLYSYSTPKLTKNLPI 247
>gi|410950408|ref|XP_003981898.1| PREDICTED: 39S ribosomal protein L4, mitochondrial [Felis catus]
Length = 294
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 123/244 (50%), Gaps = 29/244 (11%)
Query: 49 AFLQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKV 108
A +P QAWVE+L +++ G LHPD+F PR+D++ WQK +K + + TK
Sbjct: 57 ATRRPVQAWVESLRGYQQERVGLAELHPDVFSTAPRMDILHQVAIWQKNFKRISYAKTKT 116
Query: 109 TNEVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEE 168
EV+ GRKPWPQKG G R ++ G G
Sbjct: 117 RAEVKGGGRKPWPQKGSGRSRHGSIRSPIWRGGGIAHGPR-------------------- 156
Query: 169 ITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEER 228
P +LP+ V V GL L++KL QD LHIV L LP DP+YL L R
Sbjct: 157 -----GPTSYYYMLPMKVR-VQGLKVALTVKLAQDYLHIVDSLELPTSDPQYLTELARYR 210
Query: 229 CWGPSVLFVD-NTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIE 285
WG SVL VD + M +N T +K +N++PA G N ++LKH TLV+T+ + +E
Sbjct: 211 HWGDSVLLVDLAHEDMPQNAVAATSGLKTFNLIPAVGLNVHSILKHQTLVLTLQTVAFLE 270
Query: 286 DKLL 289
+KLL
Sbjct: 271 EKLL 274
>gi|260787918|ref|XP_002588998.1| hypothetical protein BRAFLDRAFT_124913 [Branchiostoma floridae]
gi|229274171|gb|EEN45009.1| hypothetical protein BRAFLDRAFT_124913 [Branchiostoma floridae]
Length = 264
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 87/262 (33%), Positives = 133/262 (50%), Gaps = 28/262 (10%)
Query: 38 EILHETKEFQNAFLQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKK 97
++ +T ++ F QP +W+E L +++ G V LHPD+F PR+D++ + WQ
Sbjct: 10 RMVDKTSLPRSRFSQPVYSWLETLGDIKDEKLGMVELHPDVFATHPRMDILHRCVRWQYL 69
Query: 98 YKWVRFDHTKVTNEVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEE 157
Y+ + +D + E+ GRKPWPQKG G R L+ G+
Sbjct: 70 YRKINYDFARTRAEMRGGGRKPWPQKGTGRARHGSIRSPLWHMGGK-------------- 115
Query: 158 EEEEEEEEEEEITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDD 217
P + LP + + +GL L++K Q DLHIV L +P D
Sbjct: 116 -----------CHGPRGPYSYYQYLP-LKYRALGLKVALTVKHSQGDLHIVDTLEIPTTD 163
Query: 218 PKYLENLVEERCWGPSVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLV 275
P+YLE+LV R WG SVL VD + + N+ + Q+ N+MP G N +MLKHDTLV
Sbjct: 164 PEYLEDLVRYRNWGKSVLLVDMNEEISENVCEASAQLNTINVMPLVGLNVYSMLKHDTLV 223
Query: 276 ITVDALKQIEDKLLLALNRSDN 297
+T+ ++++E+KLL NR +
Sbjct: 224 LTLPCVQKLENKLLYQDNRHSH 245
>gi|405946788|gb|EKC17715.1| 39S ribosomal protein L4, mitochondrial [Crassostrea gigas]
Length = 216
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 87/239 (36%), Positives = 134/239 (56%), Gaps = 31/239 (12%)
Query: 72 VNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERLDG 131
++LHPDIF + PRLD++ N+ WQ+ YK + ++ T +++ +G K PQKG
Sbjct: 2 LDLHPDIFAVHPRLDILYHNLRWQEFYKKIDYNWTPSRGDLDVSGGKQMPQKG------- 54
Query: 132 KRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRILPVMVHIVVG 191
TG+ + + + P L +LP + V G
Sbjct: 55 -------TGRARNRNRSSIMFRTGAKPLGPK-----------GPRALFYMLPKQ-YRVQG 95
Query: 192 LTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDNTDYMERNISIVT 251
L + LS K Q++LHIV L +P DDP+Y+++L++ R WG S LFVD+TDYM NI+
Sbjct: 96 LCTALSFKYAQNNLHIVDSLEIPTDDPEYIQDLIDTRFWGFSALFVDDTDYMPENITYAL 155
Query: 252 DQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLLLALNRSDNERFTSRFVIDT 308
+ YNI+P YG N +MLKH+TL++T+ A+++IE KLL +R N+R +S+F +DT
Sbjct: 156 AEFPSYNILPVYGLNVRDMLKHETLILTLAAVEKIEQKLLFHSSR--NKR-SSKFSMDT 211
>gi|260807182|ref|XP_002598388.1| hypothetical protein BRAFLDRAFT_128122 [Branchiostoma floridae]
gi|229283660|gb|EEN54400.1| hypothetical protein BRAFLDRAFT_128122 [Branchiostoma floridae]
Length = 264
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 86/262 (32%), Positives = 133/262 (50%), Gaps = 28/262 (10%)
Query: 38 EILHETKEFQNAFLQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKK 97
++ +T ++ F +P +W+E L +++ G V LHPD+F PR+D++ + WQ
Sbjct: 10 RMVDKTSLPRSRFFRPVYSWLETLGDIKDEKLGMVELHPDVFATHPRMDILHRCVRWQYL 69
Query: 98 YKWVRFDHTKVTNEVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEE 157
Y+ + +D + E+ GRKPWPQKG G R L+ G+
Sbjct: 70 YRKINYDFARTRAEMRGGGRKPWPQKGTGRARHGSIRSPLWHMGGK-------------- 115
Query: 158 EEEEEEEEEEEITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDD 217
P + LP + + +GL L++K Q DLHIV L +P D
Sbjct: 116 -----------CHGPRGPYSYYQYLP-LKYRALGLKVALTVKHSQGDLHIVDRLEIPTTD 163
Query: 218 PKYLENLVEERCWGPSVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLV 275
P+YLE+LV R WG SVL VD + + N+ + Q+ N+MP G N +MLKHDTLV
Sbjct: 164 PEYLEDLVRYRNWGKSVLLVDMNEDIAENVCEASAQLNTINVMPLVGLNVYSMLKHDTLV 223
Query: 276 ITVDALKQIEDKLLLALNRSDN 297
+T+ ++++E+KLL NR +
Sbjct: 224 LTLPCVQKLENKLLYQDNRHSH 245
>gi|327287992|ref|XP_003228712.1| PREDICTED: 39S ribosomal protein L4, mitochondrial-like [Anolis
carolinensis]
Length = 314
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 124/241 (51%), Gaps = 29/241 (12%)
Query: 51 LQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTN 110
L P QAWVE+L + +H G +LHPD+F ++PR+D++ WQ+ +K + + TK
Sbjct: 81 LAPVQAWVESLKHYDARHMGLADLHPDVFAVMPRIDILHTVATWQRNFKRISYAKTKTRA 140
Query: 111 EVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEIT 170
EV GRKPW QKG G R ++ G G
Sbjct: 141 EVRGGGRKPWRQKGSGRARHGSIRSPIWRGGGVAHGPR---------------------- 178
Query: 171 ATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCW 230
P +LP+ V V GL L++KL QD+LH+V L +P DP+YL +L R W
Sbjct: 179 ---GPTSYFYMLPMKVR-VQGLKVALTVKLAQDNLHVVDSLEIPTSDPQYLMDLARYRHW 234
Query: 231 GPSVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKL 288
G SVLFV + + + NI + +K I+P G N +MLK++TLV+T+D + +E KL
Sbjct: 235 GTSVLFV-HVNEIPENIKSAANDLKTITILPITGLNVHSMLKYETLVLTLDTVSFLEKKL 293
Query: 289 L 289
L
Sbjct: 294 L 294
>gi|432099548|gb|ELK28689.1| 39S ribosomal protein L4, mitochondrial [Myotis davidii]
Length = 285
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 123/241 (51%), Gaps = 38/241 (15%)
Query: 52 QPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNE 111
+P QAWVE+L E++ G LHPD+F PRLD++ WQK +K + + TK E
Sbjct: 60 RPVQAWVESLRGFEQERVGLAELHPDVFSTAPRLDILHQVAMWQKNFKRISYAKTKTRAE 119
Query: 112 VERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITA 171
V GRKPWPQKG G+ R G+G
Sbjct: 120 VRGGGRKPWPQKG-----SGRAR----HGRGVAHGPR----------------------- 147
Query: 172 TLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWG 231
P +LP+ + V GL L+IKL QD+LHIV L +P DP+YL L R WG
Sbjct: 148 --GPTSYYYMLPMKLR-VQGLKVALTIKLAQDNLHIVDSLEMPTADPQYLTELACYRRWG 204
Query: 232 PSVLFVDNT-DYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKL 288
SVL VD + M +NI T +K +N++PA G N +MLKH TLV+T+ + +E+KL
Sbjct: 205 DSVLLVDLVHEDMPQNIVTATAGLKTFNLIPAVGLNVHSMLKHQTLVLTLQTVAFLEEKL 264
Query: 289 L 289
L
Sbjct: 265 L 265
>gi|225707434|gb|ACO09563.1| Mitochondrial 39S ribosomal protein L4 [Osmerus mordax]
Length = 302
Score = 147 bits (371), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 94/268 (35%), Positives = 134/268 (50%), Gaps = 33/268 (12%)
Query: 39 ILHETKEFQNAFLQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKY 98
+L + + L P Q WV+ L + E + G V+LHPD+F L R+D++ WQ+ Y
Sbjct: 56 VLQRCEASVPSHLSPVQTWVDTLVSHESEPLGLVDLHPDVFALPARIDILHEVELWQRNY 115
Query: 99 KWVRFDHTKVTNEVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEE 158
K + +TKV +EV G+KPW QKG G R ++ G G
Sbjct: 116 KRISHANTKVRSEVRGGGKKPWNQKGSGRARHGSIRSPIWRGGGVSHGPR---------- 165
Query: 159 EEEEEEEEEEITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDP 218
P ++P+ V V GL LS KL Q+ LH+V L +P DP
Sbjct: 166 ---------------GPTSYYYMIPIKVR-VQGLKIALSSKLAQNYLHVVDSLNIPTPDP 209
Query: 219 KYLENLVEERCWGPSVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVI 276
+YL +L+ R G SVL VD TD + NI T +K N++PA G N +MLKH+ LV+
Sbjct: 210 QYLVDLIRYRYCGESVLLVDATDNLPDNILQATAGLKTVNVIPAIGLNVHSMLKHEVLVL 269
Query: 277 TVDALKQIEDKLLLALNRSDNERFTSRF 304
T++A+K +E+KLL N RFT +
Sbjct: 270 TLEAVKFLENKLLW-----HNHRFTPLY 292
>gi|66472248|ref|NP_001018572.1| 39S ribosomal protein L4, mitochondrial [Danio rerio]
gi|82192851|sp|Q503X2.1|RM04_DANRE RecName: Full=39S ribosomal protein L4, mitochondrial; Short=L4mt;
Short=MRP-L4
gi|63102139|gb|AAH95145.1| Zgc:110034 [Danio rerio]
Length = 302
Score = 147 bits (370), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 91/243 (37%), Positives = 127/243 (52%), Gaps = 28/243 (11%)
Query: 49 AFLQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKV 108
A L P Q W+E+L + + G V+LHPD+F + RLD++ WQ+ +K + + + K
Sbjct: 66 AHLTPAQTWLESLGSRDSDQLGVVDLHPDVFSVPIRLDILHAVEVWQRNFKRISYANVKT 125
Query: 109 TNEVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEE 168
EV GRKPW QK G R L+ G G
Sbjct: 126 RAEVRGGGRKPWQQKRTGRARHGSIRSPLWRGGGI------------------------- 160
Query: 169 ITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEER 228
I P +LP+ V V GL LS KL QD LHIV L +P DP+YL++LV+ R
Sbjct: 161 IHGPRGPTSYYYMLPMKVR-VQGLKIALSAKLAQDYLHIVDSLEIPTPDPQYLQDLVKHR 219
Query: 229 CWGPSVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIED 286
WG SVL VD + +NI T+ +K NI+PA G N ++LKH++LV+T++A+K +E
Sbjct: 220 QWGDSVLIVDVGEEFPQNILKATEDLKTVNIIPALGLNVHSLLKHESLVLTLEAVKFLEK 279
Query: 287 KLL 289
KLL
Sbjct: 280 KLL 282
>gi|47212296|emb|CAF90559.1| unnamed protein product [Tetraodon nigroviridis]
Length = 302
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 120/237 (50%), Gaps = 28/237 (11%)
Query: 55 QAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVER 114
WVE L+ + + G +LHPD+F + PRLD++ M WQ+ +K + HTKV EV
Sbjct: 72 HTWVETLEQQDSEPVGVAHLHPDVFAVPPRLDILHMVETWQRNFKRISHAHTKVRAEVRG 131
Query: 115 TGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLN 174
GRKPW QKG G R L+ G G
Sbjct: 132 GGRKPWRQKGSGRARHGSIRSPLWRGGGVSHGPR-------------------------G 166
Query: 175 PCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSV 234
P +LP+ V V+GL LS KL Q LH+V+ L LP DP+YL +L R WG S+
Sbjct: 167 PTSYYYMLPMKVR-VLGLKVALSSKLAQSHLHVVESLNLPSPDPQYLLDLARRRHWGESL 225
Query: 235 LFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLL 289
L V ++ + ++ T +K N++PA G N ++LKH LV+T++ L+ +EDKLL
Sbjct: 226 LLVHESEELPEDVLQATATLKSINVIPALGLNVHSLLKHQALVLTLETLRFLEDKLL 282
>gi|22547140|ref|NP_666500.1| 39S ribosomal protein L4, mitochondrial isoform b [Homo sapiens]
gi|12653925|gb|AAH00756.1| Mitochondrial ribosomal protein L4 [Homo sapiens]
gi|119604491|gb|EAW84085.1| mitochondrial ribosomal protein L4, isoform CRA_b [Homo sapiens]
Length = 263
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/217 (37%), Positives = 108/217 (49%), Gaps = 27/217 (12%)
Query: 52 QPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNE 111
+P QAWVE+L E++ G +LHPD+F PRLD++ WQK +K + + TK E
Sbjct: 60 RPVQAWVESLRGFEQERVGLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAE 119
Query: 112 VERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITA 171
V GRKPWPQKG G R L+ G G
Sbjct: 120 VRGGGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPR----------------------- 156
Query: 172 TLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWG 231
P +LP+ V +GL L++KL QDDLHI+ L LP DP+YL L R WG
Sbjct: 157 --GPTSYYYMLPMKVR-ALGLKVALTVKLAQDDLHIMDSLELPTGDPQYLTELAHYRRWG 213
Query: 232 PSVLFVDNT-DYMERNISIVTDQIKHYNIMPAYGENN 267
SVL VD T + M ++I T ++K +N++PA GE
Sbjct: 214 DSVLLVDLTHEEMPQSIVEATSRLKTFNLIPAVGEQR 250
>gi|291290889|ref|NP_001167475.1| mitochondrial ribosomal protein L4 [Xenopus laevis]
gi|161611723|gb|AAI55897.1| Unknown (protein for MGC:181787) [Xenopus laevis]
Length = 298
Score = 140 bits (352), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 125/243 (51%), Gaps = 28/243 (11%)
Query: 49 AFLQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKV 108
+ L P+ W+++L +++ G V+LHPD+F + PR+D++ I WQ+ +K + + K
Sbjct: 62 SHLSPKPVWLDSLKHPDDQQLGLVHLHPDVFTVPPRIDILHQVITWQRNFKRISYAKVKT 121
Query: 109 TNEVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEE 168
EV G+KP QKG G R L+ G G
Sbjct: 122 RAEVRGGGKKPRQQKGSGRSRQGSIRSPLWRGGGVAHGPR-------------------- 161
Query: 169 ITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEER 228
P ++P+ + V+GL L+ KL QDDLHI+ L + DP+YL +LV R
Sbjct: 162 -----GPTSYYYMMPMKLR-VLGLKIALTTKLAQDDLHIIDSLEISTPDPQYLIDLVNHR 215
Query: 229 CWGPSVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIED 286
WG SVL VD + + NI T +K N++PA G N +MLKHDT+V+TV A+ +E+
Sbjct: 216 QWGDSVLIVDVNENLPENIFNATINLKKINVIPATGLNVFSMLKHDTVVLTVAAVDFLEE 275
Query: 287 KLL 289
KLL
Sbjct: 276 KLL 278
>gi|17564584|ref|NP_505181.1| Protein MRPL-4 [Caenorhabditis elegans]
gi|373220278|emb|CCD72914.1| Protein MRPL-4 [Caenorhabditis elegans]
Length = 299
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 88/253 (34%), Positives = 129/253 (50%), Gaps = 31/253 (12%)
Query: 47 QNAFLQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHT 106
+N F++ QAWV NLDT E++ G V+LHPDIF PR+D++ N+ WQ Y+ V+
Sbjct: 42 ENPFIKTPQAWVSNLDTIEDEKLGLVDLHPDIFRTSPRIDILHRNLTWQSVYRNVQMTKM 101
Query: 107 KVTNEVERTGRKPWPQKGLIERLDGK-RRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEE 165
E+ GRKPWPQK G R P+ G
Sbjct: 102 LTKAEMPGGGRKPWPQKKTGRAHVGSIRSPQFIRGGFA---------------------- 139
Query: 166 EEEITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLV-LPVDDPKYLENL 224
P +LP V I GL L++K QDDLHIV + L DPKY +L
Sbjct: 140 ----NGVRGPRTWFYMLPDAVRI-QGLCVALTLKHTQDDLHIVDKIQNLQNGDPKYWIDL 194
Query: 225 VEERCWGPSVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALK 282
E R +G SVLFVD+ D + ++ + N+MP YG N +++K+DT+V++ AL+
Sbjct: 195 CEARNYGYSVLFVDDCDEISGGLAEAQQALPWLNVMPVYGLNCFSLMKYDTIVLSRSALE 254
Query: 283 QIEDKLLLALNRS 295
++E++LL ++R+
Sbjct: 255 RVEERLLTQMHRA 267
>gi|240980762|ref|XP_002403536.1| ribosomal protein L4, putative [Ixodes scapularis]
gi|215491369|gb|EEC01010.1| ribosomal protein L4, putative [Ixodes scapularis]
Length = 295
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 94/260 (36%), Positives = 122/260 (46%), Gaps = 45/260 (17%)
Query: 50 FLQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVT 109
F Q R+AWVENLDT E + G V LHP IF PR+D + NI WQK Y+ V + +
Sbjct: 68 FTQCREAWVENLDTVESEKLGLVPLHPKIFAGFPRIDTLHWNIHWQKNYQRVDWATAQTR 127
Query: 110 NEVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEI 169
E GRKPWPQKG G R + G G
Sbjct: 128 AERRGGGRKPWPQKGTGRARHGSIRAPQWKGGGVSMGPR--------------------- 166
Query: 170 TATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERC 229
P +LP V GL + LS+K Q V +++ L R
Sbjct: 167 ----GPRTYFYMLPFFRR-VEGLITALSVKFAQ-----VTEMLCTF--------LCTSRA 208
Query: 230 WGPSVLF----VDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQ 283
S F +TDY+ +NI++ DQIKH NIMP YG N +MLK+DTLV+T+ A ++
Sbjct: 209 TSHSSRFGWHCFRSTDYVPKNIAVACDQIKHMNIMPVYGLNVHSMLKYDTLVLTLSAAEE 268
Query: 284 IEDKLLLALNRSDNERFTSR 303
IE KLL LNR+D T++
Sbjct: 269 IEAKLLYQLNRTDIREATAQ 288
>gi|317575759|ref|NP_001187653.1| mitochondrial 39S ribosomal protein l4 [Ictalurus punctatus]
gi|308323607|gb|ADO28939.1| mitochondrial 39S ribosomal protein l4 [Ictalurus punctatus]
Length = 312
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 89/258 (34%), Positives = 125/258 (48%), Gaps = 33/258 (12%)
Query: 49 AFLQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKV 108
A L P Q W+ +L + E + G V+LHPD+F + RLD++ WQ+ +K + K
Sbjct: 76 AHLAPVQTWLHSLGSYESEPLGVVDLHPDVFSVPVRLDILHAVEVWQRNFKRISNAKVKS 135
Query: 109 TNEVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEE 168
EV G KPW QKG G R ++ G G
Sbjct: 136 RAEVRGGGGKPWKQKGSGRARHGSIRSPIWRGGGVAHGPR-------------------- 175
Query: 169 ITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEER 228
P +LP+ V V GL L+ KL QD LH++ L +P DP YLE L++ R
Sbjct: 176 -----GPTSYYYMLPMKVR-VQGLKIALTAKLAQDYLHVIDTLEIPTPDPHYLEELLKHR 229
Query: 229 CWGPSVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIED 286
WG SVL VD + N+ T +K NI+PA G N +MLKH++LV+T++A+K +E
Sbjct: 230 QWGDSVLIVDVGEEFSHNVLQATANLKTVNIIPAIGLNVHSMLKHESLVLTLEAVKFLEK 289
Query: 287 KLLLALNRSDNERFTSRF 304
KLL + RFT +
Sbjct: 290 KLLW-----HDSRFTPLY 302
>gi|402588149|gb|EJW82083.1| ribosomal protein L4/L1 [Wuchereria bancrofti]
Length = 303
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 88/285 (30%), Positives = 136/285 (47%), Gaps = 38/285 (13%)
Query: 32 FTSNKSEILHETKEF-------QNAFLQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPR 84
F+ N SEI ++E N FL+ QAWV L EE ++LHP+IF +PR
Sbjct: 25 FSQNASEIPTTSEELALWKVDRNNPFLEIPQAWVTTLARKEESRMDLISLHPNIFRTMPR 84
Query: 85 LDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERLDGK-RRPRLYTGKGE 143
+D++ NI WQ+ Y+ + E+ G KPWPQK G R P G
Sbjct: 85 IDLLHRNITWQENYRNLAITKQLSKKEMPGGGHKPWPQKKTGRHHAGSIRSPHFRLGGFA 144
Query: 144 EKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQD 203
P +LP + + GL ++IK Q+
Sbjct: 145 N--------------------------GIRGPKTWFYVLPDAIRLE-GLCIAVTIKHAQN 177
Query: 204 DLHIVKDLV-LPVDDPKYLENLVEERCWGPSVLFVDNTDYMERNISIVTDQIKHYNIMPA 262
DL IV D LP D +++ +L + R WG SVLF++N+ + N++ V D+I +N+MP
Sbjct: 178 DLVIVDDFASLPTADAQFMHDLADSRNWGYSVLFINNSSEVPENMAKVCDEIPTFNVMPV 237
Query: 263 YGEN--NMLKHDTLVITVDALKQIEDKLLLALNRSDNERFTSRFV 305
YG N +++KHDT+V ++ AL+ + ++L NR+ + R+V
Sbjct: 238 YGINCFSLVKHDTVVFSLAALQLFQSRILFHKNRAQTLQRKYRYV 282
>gi|324510849|gb|ADY44533.1| 39S ribosomal protein L4 [Ascaris suum]
Length = 298
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/262 (32%), Positives = 133/262 (50%), Gaps = 31/262 (11%)
Query: 48 NAFLQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTK 107
N F++ Q WV +L++ EEK G ++LHP++F PR+D++ N+ WQ Y+ V+F
Sbjct: 56 NPFIEIPQCWVCSLNSVEEKRSGIIDLHPEVFRCTPRIDILHRNVTWQLVYRNVQFTKQL 115
Query: 108 VTNEVERTGRKPWPQKGLIERLDGK-RRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEE 166
E+ GRKPWPQK G R P+ Y G
Sbjct: 116 SKGEMPGGGRKPWPQKKTGRAHAGSIRSPQFYAGGFA----------------------- 152
Query: 167 EEITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDL-VLPVDDPKYLENLV 225
P +LP + + GL L+IK Q+DL +V D LP +P+YL +L
Sbjct: 153 ---NGVRGPRTWFYMLPDAIRL-QGLCVALTIKHAQNDLVVVDDFGSLPNAEPQYLHDLA 208
Query: 226 EERCWGPSVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQ 283
+ R WG SVLFV + + N++ D I +NIMP YG N +++K++T+V+ AL+
Sbjct: 209 DARNWGYSVLFVTESSEVPSNLADACDGIPSFNIMPVYGLNCYSIMKYETIVLCRLALEI 268
Query: 284 IEDKLLLALNRSDNERFTSRFV 305
+E ++L +R+++ + R+V
Sbjct: 269 LEYRILFHKHRAESLQKKYRYV 290
>gi|62857671|ref|NP_001017222.1| mitochondrial ribosomal protein L4 [Xenopus (Silurana) tropicalis]
gi|89268693|emb|CAJ82705.1| mitochondrial ribosomal protein L4 [Xenopus (Silurana) tropicalis]
Length = 298
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 123/243 (50%), Gaps = 28/243 (11%)
Query: 49 AFLQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKV 108
+ L P+ W+E+L +++ G V+LHPD+F + PR+D++ + WQ+ +K + K
Sbjct: 62 SHLSPKPVWLESLRHPDDQPLGLVHLHPDVFTVPPRIDILHQVVTWQRNFKRISHAKVKT 121
Query: 109 TNEVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEE 168
EV G+KP QKG G R L+ G G
Sbjct: 122 RAEVRGGGKKPRQQKGSGRARQGSIRSPLWRGGGVAHGPR-------------------- 161
Query: 169 ITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEER 228
P ++P+ + V GL L+ KL QDDLH++ L + DP+YL +L++ R
Sbjct: 162 -----GPTSYYYMMPMKMR-VQGLKIALTAKLAQDDLHVIDSLEISTPDPQYLVDLIKHR 215
Query: 229 CWGPSVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIED 286
WG SVL VD + + N+ T +K N++PA G + MLKHDT+V+TV A+ +E+
Sbjct: 216 QWGESVLIVDVNENLPENLFNATVNLKKINVIPAIGLSVFGMLKHDTVVLTVGAVDFLEE 275
Query: 287 KLL 289
KLL
Sbjct: 276 KLL 278
>gi|4680695|gb|AAD27737.1|AF132962_1 CGI-28 protein [Homo sapiens]
Length = 311
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 120/241 (49%), Gaps = 29/241 (12%)
Query: 52 QPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNE 111
+P QAWVE+L E++ G +LHPD+F PRLD++ WQK +K + + TK E
Sbjct: 60 RPVQAWVESLRGFEQERVGLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAE 119
Query: 112 VERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITA 171
V G KP L +R + G +
Sbjct: 120 VRGGGGKP---------LAAERH---WAGPAWQ-------------HPLSALARRRCCPW 154
Query: 172 TLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWG 231
P +LP+ V +GL L++KL QDDLHI+ L LP DP+YL L R WG
Sbjct: 155 PPGPTSYYYMLPMKVR-ALGLKVALTVKLAQDDLHIMDSLELPTGDPQYLTELAHYRRWG 213
Query: 232 PSVLFVDNT-DYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKL 288
SVL VD T + M ++I T ++K +N++PA G N +MLKH TLV+T+ + +EDKL
Sbjct: 214 DSVLLVDLTHEEMPQSIVEATSRLKTFNLIPAVGLNVHSMLKHQTLVLTLPTVAFLEDKL 273
Query: 289 L 289
L
Sbjct: 274 L 274
>gi|341899031|gb|EGT54966.1| hypothetical protein CAEBREN_10053 [Caenorhabditis brenneri]
gi|341899678|gb|EGT55613.1| hypothetical protein CAEBREN_16401 [Caenorhabditis brenneri]
Length = 296
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 88/263 (33%), Positives = 133/263 (50%), Gaps = 31/263 (11%)
Query: 47 QNAFLQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHT 106
++ F+Q QAWV +L+T E++ G V+LHPDIF PR+D++ N+ WQ Y+ V+
Sbjct: 39 ESPFVQIPQAWVSSLETIEDQKQGLVDLHPDIFRTSPRIDILHRNLTWQSVYRNVQMTKM 98
Query: 107 KVTNEVERTGRKPWPQKGLIERLDGK-RRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEE 165
E+ GRKPWPQK G R P+ G
Sbjct: 99 LTKAEMPGGGRKPWPQKKTGRAHVGSIRAPQFIRGGFA---------------------- 136
Query: 166 EEEITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLV-LPVDDPKYLENL 224
P +LP V I GL L++K QDDLHIV +L L DPK+ +L
Sbjct: 137 ----NGVRGPRTWFYMLPDAVRIQ-GLCVALTLKHTQDDLHIVDNLQNLQNGDPKFWIDL 191
Query: 225 VEERCWGPSVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALK 282
E R +G SVLFVD+ D + ++ + N+MP YG N +++K+DT+V++ +AL
Sbjct: 192 CEARNYGYSVLFVDDADTVSGGLAEAQQALPWLNVMPVYGLNCFSLIKYDTVVLSRNALD 251
Query: 283 QIEDKLLLALNRSDNERFTSRFV 305
+IE++LL ++R+ R++
Sbjct: 252 RIEERLLGHIHRAGPMNKKYRYM 274
>gi|268554728|ref|XP_002635351.1| Hypothetical protein CBG01522 [Caenorhabditis briggsae]
Length = 294
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/253 (32%), Positives = 130/253 (51%), Gaps = 31/253 (12%)
Query: 47 QNAFLQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHT 106
++ F++ QAWV +L+T E++ G V+LHPDIF PR+D++ N+ WQ Y+ V+
Sbjct: 37 ESPFVKTPQAWVSSLETVEDEKLGLVDLHPDIFRTTPRIDILHRNLTWQSVYRNVQMTKM 96
Query: 107 KVTNEVERTGRKPWPQKGLIERLDGK-RRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEE 165
E+ GRKPWPQK G R P+ G
Sbjct: 97 LTKAEMPGGGRKPWPQKKTGRAHVGSIRAPQFIRGGFA---------------------- 134
Query: 166 EEEITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLV-LPVDDPKYLENL 224
P +LP + I GL L++K QDDLHIV ++ L DPK+ +L
Sbjct: 135 ----NGVRGPRTWFYMLPDAIRI-QGLCVALTLKHAQDDLHIVDNIQNLQNGDPKFWIDL 189
Query: 225 VEERCWGPSVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALK 282
E R +G SVLF+D+ D + ++ + N+MP YG N +++K+DT+V++ +AL
Sbjct: 190 CEARNYGYSVLFIDDCDEVSGGLAEAQQALPWLNVMPVYGLNCFSLIKYDTVVLSRNALD 249
Query: 283 QIEDKLLLALNRS 295
+IE++LL ++R+
Sbjct: 250 RIEERLLTHIHRA 262
>gi|170591979|ref|XP_001900747.1| ribosomal protein L4/L1 family protein [Brugia malayi]
gi|158591899|gb|EDP30502.1| ribosomal protein L4/L1 family protein [Brugia malayi]
Length = 303
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 85/285 (29%), Positives = 136/285 (47%), Gaps = 38/285 (13%)
Query: 32 FTSNKSEILHETKEF-------QNAFLQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPR 84
F+ N SEI ++E N FL+ QAWV L EE ++LHPDIF +PR
Sbjct: 25 FSQNASEIPATSEELALWKVDKNNPFLEIPQAWVTTLARKEESRMDLISLHPDIFRTMPR 84
Query: 85 LDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERLDGK-RRPRLYTGKGE 143
+D++ NI WQ+ Y+ + E+ G KPWPQK G R P G
Sbjct: 85 IDLLHRNITWQENYRNLAITKQLSKKEMPGGGHKPWPQKKTGRHHAGSIRSPHFRLGGFA 144
Query: 144 EKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQD 203
P +LP + + GL ++IK Q+
Sbjct: 145 N--------------------------GIRGPKTWFYVLPDAIRLE-GLCIAVTIKHAQN 177
Query: 204 DLHIVKDLV-LPVDDPKYLENLVEERCWGPSVLFVDNTDYMERNISIVTDQIKHYNIMPA 262
DL IV + LP D +++ +L + R WG S+LF++++ + N++ V D+I +N+MP
Sbjct: 178 DLVIVDNFASLPNADAQFMHDLADSRNWGYSILFINDSSEVPENMAKVCDEIPTFNVMPV 237
Query: 263 YGEN--NMLKHDTLVITVDALKQIEDKLLLALNRSDNERFTSRFV 305
YG N +++KHDT++ ++ AL+ + ++L NR+ + R+V
Sbjct: 238 YGINCFSLVKHDTVIFSLAALQLFQSRILFHKNRAQTLQRKYRYV 282
>gi|148693200|gb|EDL25147.1| mitochondrial ribosomal protein L4, isoform CRA_a [Mus musculus]
Length = 300
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 80/241 (33%), Positives = 119/241 (49%), Gaps = 23/241 (9%)
Query: 52 QPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNE 111
+P QAWVE+L E++ G LHPD+F PRLD++ WQ+ ++ + + +TK E
Sbjct: 60 RPVQAWVESLRGFEQERIGLAELHPDVFATAPRLDIVHQVAIWQRNFRRISYANTKTRAE 119
Query: 112 VERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITA 171
+ I + +P + + +
Sbjct: 120 LLN-----------ITHSNTLCQP--------SSKFLRSQTSGDTNTSYATVPAGGVAHG 160
Query: 172 TLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWG 231
P +LP+ V +GL L++KLMQDDLHIV L LP DP+YL L + R WG
Sbjct: 161 PRGPTSYYYMLPMKVR-ALGLKVALTVKLMQDDLHIVDSLELPTADPQYLTELAQYRHWG 219
Query: 232 PSVLFVDNT-DYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKL 288
SVL VD T + M +N+ T + +N++PA G N +MLKH TLV+T+ ++ +EDKL
Sbjct: 220 SSVLLVDLTHEEMPKNVVAATSGLNSFNLIPAVGLNVYSMLKHQTLVLTLPSVAFLEDKL 279
Query: 289 L 289
L
Sbjct: 280 L 280
>gi|402904327|ref|XP_003914998.1| PREDICTED: 39S ribosomal protein L4, mitochondrial-like, partial
[Papio anubis]
Length = 220
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 84/227 (37%), Positives = 110/227 (48%), Gaps = 34/227 (14%)
Query: 66 EKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKGL 125
E GF + P RLD++ WQK +K + + TK EV GRKPWPQKG
Sbjct: 5 EAELGFSCVLPPC-----RLDILHQVAMWQKNFKRISYAKTKTRAEVRGGGRKPWPQKGT 59
Query: 126 IERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRILPVM 185
G R ++ G G P +LP+
Sbjct: 60 GRARHGSIRSPIWRGGGVAHGPR-------------------------GPTSYYYMLPMK 94
Query: 186 VHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDNT-DYME 244
V +GL LSIKL QDDLHI+ L LP DP+YL L R WG SVL VD T + M
Sbjct: 95 VR-ALGLKVALSIKLAQDDLHIMDSLELPTGDPQYLTELARYRRWGDSVLLVDLTYEEMP 153
Query: 245 RNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLL 289
++I T ++K +N++PA G N +MLKH TLV+T+ + +EDKLL
Sbjct: 154 QSIVEATSRLKTFNLIPAVGLNVHSMLKHQTLVLTLPTIAFLEDKLL 200
>gi|393910560|gb|EFO26581.2| hypothetical protein LOAG_01903 [Loa loa]
Length = 759
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 84/284 (29%), Positives = 132/284 (46%), Gaps = 38/284 (13%)
Query: 33 TSNKSEILHETKEF-------QNAFLQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRL 85
N SEI ++E N F++ QAWV L +E ++LHP IF +PR+
Sbjct: 481 CQNASEIPATSEELALWKIERSNPFIEIPQAWVTTLAKKQESRVDLISLHPCIFRTMPRI 540
Query: 86 DVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERLDGK-RRPRLYTGKGEE 144
D++ NI WQ+ Y+ + E+ G KPWPQK G R P G
Sbjct: 541 DLLHRNITWQENYRNLAITKQLSKKEMPGGGHKPWPQKKTGRHHAGSIRSPHFRLGGFA- 599
Query: 145 KEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDD 204
P +LP + + GL ++IK Q+D
Sbjct: 600 -------------------------NGIRGPKTWFYVLPDAIRLE-GLCVAVTIKHAQND 633
Query: 205 LHIVKDLV-LPVDDPKYLENLVEERCWGPSVLFVDNTDYMERNISIVTDQIKHYNIMPAY 263
L IV D LP D+ +++ +L + R WG SVLF++ + + N++ V D I +N+MP Y
Sbjct: 634 LVIVDDFASLPSDEAQFVHDLADSRNWGYSVLFINESSEVSGNLAKVCDDIPTFNVMPVY 693
Query: 264 GEN--NMLKHDTLVITVDALKQIEDKLLLALNRSDNERFTSRFV 305
G N +++KHDT+V ++ AL+ + ++L NR+ + R+V
Sbjct: 694 GINCFSLVKHDTVVFSLAALRLFQSRILFHKNRAQTLQKKYRYV 737
>gi|312069025|ref|XP_003137489.1| hypothetical protein LOAG_01903 [Loa loa]
Length = 746
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 84/284 (29%), Positives = 132/284 (46%), Gaps = 38/284 (13%)
Query: 33 TSNKSEILHETKEF-------QNAFLQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRL 85
N SEI ++E N F++ QAWV L +E ++LHP IF +PR+
Sbjct: 468 CQNASEIPATSEELALWKIERSNPFIEIPQAWVTTLAKKQESRVDLISLHPCIFRTMPRI 527
Query: 86 DVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERLDGK-RRPRLYTGKGEE 144
D++ NI WQ+ Y+ + E+ G KPWPQK G R P G
Sbjct: 528 DLLHRNITWQENYRNLAITKQLSKKEMPGGGHKPWPQKKTGRHHAGSIRSPHFRLGGFA- 586
Query: 145 KEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDD 204
P +LP + + GL ++IK Q+D
Sbjct: 587 -------------------------NGIRGPKTWFYVLPDAIRLE-GLCVAVTIKHAQND 620
Query: 205 LHIVKDLV-LPVDDPKYLENLVEERCWGPSVLFVDNTDYMERNISIVTDQIKHYNIMPAY 263
L IV D LP D+ +++ +L + R WG SVLF++ + + N++ V D I +N+MP Y
Sbjct: 621 LVIVDDFASLPSDEAQFVHDLADSRNWGYSVLFINESSEVSGNLAKVCDDIPTFNVMPVY 680
Query: 264 GEN--NMLKHDTLVITVDALKQIEDKLLLALNRSDNERFTSRFV 305
G N +++KHDT+V ++ AL+ + ++L NR+ + R+V
Sbjct: 681 GINCFSLVKHDTVVFSLAALRLFQSRILFHKNRAQTLQKKYRYV 724
>gi|9956063|gb|AAG02005.1| similar to Homo sapiens CGI-28 protein mRNA with GenBank Accession
Number AF132962 [Homo sapiens]
Length = 211
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 100/199 (50%), Gaps = 29/199 (14%)
Query: 94 WQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEE 153
WQK +K + + TK EV GRKPWPQKG G R L+ G G
Sbjct: 2 WQKNFKRISYAKTKTRAEVRGGGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPR----- 56
Query: 154 EEEEEEEEEEEEEEEITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVL 213
P +LP+ V +GL L++KL QDDLHI+ L L
Sbjct: 57 --------------------GPTSYYYMLPMKVR-ALGLKVALTVKLAQDDLHIMDSLEL 95
Query: 214 PVDDPKYLENLVEERCWGPSVLFVDNT-DYMERNISIVTDQIKHYNIMPAYGEN--NMLK 270
P DP+YL L R WG SVL VD T + M ++I T ++K +N++PA G N +MLK
Sbjct: 96 PTGDPQYLTELAHYRRWGDSVLLVDLTHEEMPQSIVEATSRLKTFNLIPAVGLNVHSMLK 155
Query: 271 HDTLVITVDALKQIEDKLL 289
H TLV+T+ + +EDKLL
Sbjct: 156 HQTLVLTLPTVAFLEDKLL 174
>gi|99032310|pdb|2FTC|D Chain D, Structural Model For The Large Subunit Of The Mammalian
Mitochondrial Ribosome
gi|251837156|pdb|3IY9|D Chain D, Leishmania Tarentolae Mitochondrial Large Ribosomal
Subunit Model
Length = 175
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 97/196 (49%), Gaps = 29/196 (14%)
Query: 94 WQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEE 153
WQK +K + + TK EV GRKPWPQKG G R L+ G G
Sbjct: 6 WQKNFKRISYAKTKTRAEVRGGGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPR----- 60
Query: 154 EEEEEEEEEEEEEEEITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVL 213
P +LP+ V +GL L++KL QDDLHI+ L L
Sbjct: 61 --------------------GPTSYYYMLPMKVR-ALGLKVALTVKLAQDDLHIMDSLEL 99
Query: 214 PVDDPKYLENLVEERCWGPSVLFVDNT-DYMERNISIVTDQIKHYNIMPAYGEN--NMLK 270
P DP+YL L R WG SVL VD T + M ++I T ++K +N++PA G N +MLK
Sbjct: 100 PTGDPQYLTELAHYRRWGDSVLLVDLTHEEMPQSIVEATSRLKTFNLIPAVGLNVHSMLK 159
Query: 271 HDTLVITVDALKQIED 286
H TLV+T+ + +ED
Sbjct: 160 HQTLVLTLPTVAFLED 175
>gi|345310474|ref|XP_003428973.1| PREDICTED: 39S ribosomal protein L4, mitochondrial-like, partial
[Ornithorhynchus anatinus]
Length = 201
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 101/207 (48%), Gaps = 28/207 (13%)
Query: 85 LDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEE 144
LD++ + WQ+ +K + + TK EV GRKPWPQKG G R L+ G G
Sbjct: 1 LDILHQVVTWQRNFKRISYAKTKTRAEVRGGGRKPWPQKGSGRARHGSIRSPLWRGGGVA 60
Query: 145 KEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDD 204
P +LP+ V+GL L+ KL QD+
Sbjct: 61 HGPR-------------------------GPTSYYYMLPMKTR-VLGLKVALTTKLAQDN 94
Query: 205 LHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDNTDYMERNISIVTDQIKHYNIMPAYG 264
LHIV L LP DP+YL +LV+ R WG SVL VD + M +NI +K N+M G
Sbjct: 95 LHIVDSLELPTSDPQYLIDLVQYRHWGDSVLIVDVEEQMPQNIVSAVSSLKKINLMHVLG 154
Query: 265 EN--NMLKHDTLVITVDALKQIEDKLL 289
N ++L+ TLV+T+D + +E+KLL
Sbjct: 155 LNVYSILRFQTLVLTLDTVSFLEEKLL 181
>gi|7670462|dbj|BAA95082.1| unnamed protein product [Mus musculus]
Length = 184
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 90/181 (49%), Gaps = 29/181 (16%)
Query: 112 VERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITA 171
V GRKPW QKG G R L+ G G
Sbjct: 10 VSGGGRKPWQQKGSGRARHGSIRSPLWLGGGVAHGPR----------------------- 46
Query: 172 TLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWG 231
P +LP+ V +GL L++KLMQDDLHIV L LP DP+YL L + R WG
Sbjct: 47 --GPTSYYYMLPMKVR-ALGLKVALTVKLMQDDLHIVDSLELPTADPQYLTELAQYRHWG 103
Query: 232 PSVLFVDNT-DYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKL 288
SVL VD T + M +N+ T + +N++PA G N +MLKH TLV+T+ ++ +EDKL
Sbjct: 104 SSVLLVDLTHEEMPKNVVAATSGLNSFNLIPAVGLNVYSMLKHQTLVLTLPSVALLEDKL 163
Query: 289 L 289
L
Sbjct: 164 L 164
>gi|358332019|dbj|GAA34904.2| 39S ribosomal protein L4 mitochondrial [Clonorchis sinensis]
Length = 436
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 99/372 (26%), Positives = 144/372 (38%), Gaps = 133/372 (35%)
Query: 34 SNKSEILHETKEFQNAFL----QPRQAWVENLDT-----TEEKHFGFVNLHPDIFGLVPR 84
+N S ++ ++A+ QPRQAW+E L + G V+LHPD+F PR
Sbjct: 42 ANSSPLITARTLAKSAYCSPGRQPRQAWLETLKPGPHVPSLHPPVGMVDLHPDVFAATPR 101
Query: 85 LDVITMNIEWQKKYKWVRFDHTKVTNEVE---RTGRKPWPQKGLIERLDGKRRPRLYTGK 141
LD++ N+ WQ Y+ D +T E R+ RKPWPQKG G RR L+ G
Sbjct: 102 LDLVHQNLYWQAHYRMT--DWRCITTRAELPYRSRRKPWPQKGTGRARHGNRRTHLWLGG 159
Query: 142 GEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRILPVMVHIVVGLTSTLSIKLM 201
G+ K E LP V + GL + LS+K
Sbjct: 160 GQCKGPRGPES-------------------------YFSTLPFEVRL-AGLLTMLSVKHT 193
Query: 202 QDDLHIVKDLVLP-----------------------VDDPK------------------- 219
Q+DLHIV + L +DDP
Sbjct: 194 QNDLHIVDNFDLSEALERQAKEVALEAAVAALEDLELDDPLSASARTHALRLSKAMNESA 253
Query: 220 -YLENLVEERCWGPSVLFVDN-----------------------------------TDYM 243
YL LV+ER WGPSVLFV + +++
Sbjct: 254 IYLRQLVDERRWGPSVLFVTDVALDPTLWLANKTEQNYPNLDSVSDLAITLGCSAYANFV 313
Query: 244 ERNIS---------IVTDQIKH----YNIMPAYGEN--NMLKHDTLVITVDALKQIEDKL 288
E +S V + H +MP +G N ++++H+T+V T++AL ++E++L
Sbjct: 314 EAELSPEAVLHQTEAVCPRATHPGRGLTLMPLHGLNVWSLVQHNTVVFTLNALDRLEERL 373
Query: 289 LLALNRSDNERF 300
L A R D F
Sbjct: 374 LQAQRRIDRPDF 385
>gi|340376317|ref|XP_003386680.1| PREDICTED: 39S ribosomal protein L4, mitochondrial-like [Amphimedon
queenslandica]
Length = 252
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 108/241 (44%), Gaps = 32/241 (13%)
Query: 50 FLQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVT 109
+ QP + W+ + +T E G L +F PRLD++ + WQ K K
Sbjct: 37 YYQP-ETWLTSFETGER--LGIFKLDNRVFSCSPRLDILQRVVIWQLAKKRAGTAKVKTR 93
Query: 110 NEVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEI 169
EV GRKPWPQKG + G R + G G +
Sbjct: 94 GEVRGGGRKPWPQKGHGQARQGSIRAPHWKGGGVVHGPRGNADYSYT------------- 140
Query: 170 TATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERC 229
LP V +GL + LS+K Q+DL +V DL + ++ K L +++
Sbjct: 141 ------------LPKKVK-ALGLCTALSVKYTQNDLMVVDDLTVNNNNTKNLLRILDIHG 187
Query: 230 WGPSVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDK 287
SVL VD DY+ +I++ I H +++P+ G N ++L D LV+T+ A++ IE++
Sbjct: 188 L-KSVLLVDGGDYVNMSIAMSGGNIPHVDLLPSTGLNVVSILSRDKLVLTLGAVRMIENR 246
Query: 288 L 288
L
Sbjct: 247 L 247
>gi|323649930|gb|ADX97051.1| mitochondrial 39S ribosomal protein l4 [Perca flavescens]
Length = 209
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 76/180 (42%), Gaps = 26/180 (14%)
Query: 39 ILHETKEFQNAFLQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKY 98
+L + A L P Q WVE L + + G LHPD+F + PRLD++ WQ+ Y
Sbjct: 56 VLRKCDAVVPAHLSPVQTWVETLARPDSEPLGLAQLHPDVFAVHPRLDILHEVETWQRNY 115
Query: 99 KWVRFDHTKVTNEVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEE 158
K + TK+ +EV GRKPW QKG G R L+ G G
Sbjct: 116 KRISHASTKIRSEVRGGGRKPWKQKGSGRARHGSIRSPLWKGGGVANGPR---------- 165
Query: 159 EEEEEEEEEEITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDP 218
P +LP+ V V GL LS K+ Q LHIV L +P DP
Sbjct: 166 ---------------GPTSYFYMLPMKVR-VQGLKVALSSKMAQQYLHIVDSLNIPSPDP 209
>gi|123959698|gb|AAI28968.1| LOC100037111 protein [Xenopus laevis]
Length = 169
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 73/118 (61%), Gaps = 3/118 (2%)
Query: 174 NPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPS 233
P ++P+ + V+GL L+ KL QDDLHI+ L + DP+YL +LV R WG S
Sbjct: 33 GPTSYYYMMPMKLR-VLGLKIALTTKLAQDDLHIIDSLEISTPDPQYLIDLVNHRQWGDS 91
Query: 234 VLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLL 289
VL VD + + NI T +K N++PA G N +MLKHDT+V+TV A+ +E+KLL
Sbjct: 92 VLIVDVNENLPENIFNATINLKKINVIPATGLNVFSMLKHDTVVLTVAAVDFLEEKLL 149
>gi|198430347|ref|XP_002122114.1| PREDICTED: similar to mitochondrial ribosomal protein L4 [Ciona
intestinalis]
Length = 330
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 108/240 (45%), Gaps = 36/240 (15%)
Query: 56 AWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERT 115
W++NL ++ V LHP +F PR+D++ + WQ++Y+ V + ++ E+ R
Sbjct: 79 VWLDNLLHARPQYNSVVQLHPVLFDTHPRMDILHSVVRWQQEYREVDYSWSRTRAEIGRG 138
Query: 116 GRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNP 175
+KPWPQKG G L+ G + E LNP
Sbjct: 139 KKKPWPQKGTGRARHGSSNSPLWVKGGISQGPRGPRASFYE----------------LNP 182
Query: 176 CGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVL 235
L + GL LSIK +Q+DL I++ + D P + E L S+L
Sbjct: 183 NTL----------LDGLLIALSIKHIQNDLIIIESAQISQDMPDFDEYLENRNLSEASML 232
Query: 236 FV----DNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLL 289
V +N Y+E + + K NIMP YG N ++LKHD LV++ L ++E K+L
Sbjct: 233 LVHAENENISYLEH----LAEDSKLLNIMPLYGLNVCSILKHDKLVLSRCILDELEHKVL 288
>gi|349803749|gb|AEQ17347.1| putative mitochondrial ribosomal protein l4, partial [Pipa
carvalhoi]
Length = 130
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 74/118 (62%), Gaps = 3/118 (2%)
Query: 174 NPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPS 233
P ++P+ + V+GL L+ KL QDDL I+ L +P DP+YL +LV+ R WG S
Sbjct: 9 GPTSYYYMMPMKMR-VLGLKIALTTKLAQDDLRIIDSLEIPSPDPQYLVDLVKHRQWGES 67
Query: 234 VLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLL 289
VL VD + M NI T +K N++PA G N +MLKH+T+V+TV A+ +E+KLL
Sbjct: 68 VLIVDVNENMPENIMAATVNLKKINLIPAIGLNVFSMLKHNTVVLTVGAVDFLEEKLL 125
>gi|256071067|ref|XP_002571863.1| 50S ribosomal protein L4 [Schistosoma mansoni]
gi|353228575|emb|CCD74746.1| putative 50s ribosomal protein L4 [Schistosoma mansoni]
Length = 409
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/303 (25%), Positives = 117/303 (38%), Gaps = 94/303 (31%)
Query: 54 RQAWVENL-------DTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHT 106
R W+E L + + G ++LHPDIF + PR+D++ N+ WQ Y+ + +
Sbjct: 78 RLTWLETLKPVGVSKSSNSQSLLGMIDLHPDIFAVFPRIDLVHKNLYWQAHYRLIDWRCI 137
Query: 107 KVTNEVER-TGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEE 165
E+ T +KPWPQKG + G RR ++ G+ K E E
Sbjct: 138 TTRAELSYGTRKKPWPQKGTGKARHGNRRTHIWLTGGQCKGPRGPESFYYLLSYGER--- 194
Query: 166 EEEITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIV-KDLVLPVDDPKYLENL 224
+ GL S LSIK Q +V K+ L Y+ L
Sbjct: 195 -----------------------LAGLLSMLSIKHAQVIFVVVEKNNEL---SAIYIRQL 228
Query: 225 VEERCWGPSVLFV------------------------DNTDYMERNISI----------- 249
+ RCWGPS+LFV DN ++ N++I
Sbjct: 229 ADLRCWGPSILFVDAHSPASQLAVPCPGSENIDNNETDNMNFSYDNLAISLACGSYENHV 288
Query: 250 -------------------VTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKL 288
T + +MP + N +M+ HDTLVI++ AL+ +E++L
Sbjct: 289 KSEISPESSAFKLDSIAPRATHPGRGLTLMPVHSLNVWSMVHHDTLVISLKALEMLEERL 348
Query: 289 LLA 291
+ A
Sbjct: 349 IAA 351
>gi|226858987|gb|ACO87994.1| P450 [Nilaparvata lugens]
Length = 497
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 72/117 (61%), Gaps = 11/117 (9%)
Query: 199 KLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDNTDYMERNISIVTDQIKHYN 258
KLM D+ L +P +DP+YLE+LV ER WG SV FVD+ D M RNI+ T H N
Sbjct: 386 KLMGHDIP-NDSLEIPTEDPRYLEDLVSERAWGVSVPFVDSVDIMPRNITTAT-PFGHGN 443
Query: 259 ------IMPAYGENNMLKHDTLVITVDALKQIEDKLLLALNRSDNERFTSRFVIDTV 309
I+ Y +MLKH+ LV+TV A+++IE K++ LNR+D + RF+++ V
Sbjct: 444 RRCMGEILNKY---SMLKHEALVLTVSAVEEIEKKIIYNLNRTDAAKKCQRFMLNQV 497
>gi|308496497|ref|XP_003110436.1| hypothetical protein CRE_05535 [Caenorhabditis remanei]
gi|308243777|gb|EFO87729.1| hypothetical protein CRE_05535 [Caenorhabditis remanei]
Length = 243
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 80/175 (45%), Gaps = 29/175 (16%)
Query: 48 NAFLQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTK 107
+ F++ QAWV +L+T E++ G V+LHPDIF PR+D++ N+ WQ Y+ V+
Sbjct: 85 SPFVKTPQAWVSSLETIEDEKLGLVDLHPDIFRATPRIDILHRNLTWQSVYRNVQMTKML 144
Query: 108 VTNEVERTGRKPWPQKGLIERLDGK-RRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEE 166
E+ GRKPWPQK G R P+ G
Sbjct: 145 TKAEMPGGGRKPWPQKKTGRAHVGSIRAPQFIRGGFAN---------------------- 182
Query: 167 EEITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLV-LPVDDPKY 220
P +LP V I GL L++K QDDLHIV ++ L +DPKY
Sbjct: 183 ----GVRGPRTWFYMLPDAVRI-QGLCVALTLKHAQDDLHIVDNIQNLQNEDPKY 232
>gi|226466798|emb|CAX69534.1| putative mitochondrial ribosomal protein L4 isoform a [Schistosoma
japonicum]
Length = 450
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 86/347 (24%), Positives = 126/347 (36%), Gaps = 137/347 (39%)
Query: 54 RQAWVENL-------DTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHT 106
R AW+E L + + G V+LHPDIF + PR+D++ N+ WQ Y+ + D
Sbjct: 74 RLAWLETLKPLGLSQSSNTQSLVGMVDLHPDIFAVFPRIDLVHKNLYWQAHYRLI--DWR 131
Query: 107 KVTNEVE---RTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEE 163
+T E T +KPWPQK + G RR ++ G+ K
Sbjct: 132 CITTRAELPYGTRKKPWPQKKTGKARHGNRRTHIWLTGGQCKGPR--------------- 176
Query: 164 EEEEEITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVL---------- 213
P +LP + GL S L+IK Q+DLHIV D +L
Sbjct: 177 ----------GPESFFYVLPYNERL-AGLLSMLTIKHAQNDLHIVDDFMLSETLEGDAKN 225
Query: 214 -------------PVDDPK--------------------YLENLVEERCWGPSVLFV--- 237
++DP YL L + R WGPSVLF+
Sbjct: 226 IFTEAQTASLNLDALEDPLSPLNKTRHYRLTKTMNESAIYLRQLADLRRWGPSVLFIDAY 285
Query: 238 ---------------------DNTDYMERNISI--------------------------- 249
D+T+ N++I
Sbjct: 286 SLADQLAIPRPGSENIGSYKTDSTNSSCNNLAISLACSSYENHVKNEISPESSAFKFNSI 345
Query: 250 ---VTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLLLA 291
T + +MP + N +M+ HDTLVI++ AL+ +E KL+ A
Sbjct: 346 SPRATHPGRGLTLMPVHSLNVWSMVHHDTLVISLKALEILETKLIAA 392
>gi|291413252|ref|XP_002722892.1| PREDICTED: 39S ribosomal protein L4, mitochondrial-like
[Oryctolagus cuniculus]
Length = 162
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 58/106 (54%), Gaps = 2/106 (1%)
Query: 48 NAFLQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTK 107
+A +P QAWVE+L E++ G LHPD+F PRLDV+ WQK +K + + TK
Sbjct: 56 SAPRRPVQAWVESLRGYEQERVGLAELHPDVFATAPRLDVLHQVAVWQKNFKRISYAKTK 115
Query: 108 VTNEVERTGRKPWPQKGLIERLDGKRRPRLYTGK--GEEKEEEEEE 151
EV GRKPW QKG G R ++ G G+ K +++E
Sbjct: 116 TRAEVRGGGRKPWQQKGSGRARHGSIRSPIWRGGLHGDPKRVQQQE 161
>gi|168041144|ref|XP_001773052.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675599|gb|EDQ62092.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 269
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 99/227 (43%), Gaps = 29/227 (12%)
Query: 70 GFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERL 129
G L D+F + R DV+ + WQ + TK +EV TGRKP PQKG
Sbjct: 70 GLATLAGDVFDVPIRPDVVHRVVRWQLAKRRQGTASTKGIHEVSGTGRKPGPQKGSGRAR 129
Query: 130 DGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRILPVMVHIV 189
G R + G + + E +++
Sbjct: 130 HGSLRGPQFRGGATQHGPKPRSHEIGLQKQVRR--------------------------- 162
Query: 190 VGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDNTDYMERNISI 249
+GL LS ++ + L + + P + +E L+ + VL VD+ + + ++
Sbjct: 163 LGLKVALSSRVAEGKLKVFDSVEPPTLKTREMERLIADIEGCKKVLIVDDAETVNESLCR 222
Query: 250 VTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLLLALNR 294
T + + N++PA G N ++L+HDTLV++V A+++IE++L +NR
Sbjct: 223 ATGNLHYVNVLPAKGLNVYSILQHDTLVMSVGAIRRIEERLHTPINR 269
>gi|148693201|gb|EDL25148.1| mitochondrial ribosomal protein L4, isoform CRA_b [Mus musculus]
Length = 194
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
Query: 52 QPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNE 111
+P QAWVE+L E++ G LHPD+F PRLD++ WQ+ ++ + + +TK E
Sbjct: 55 RPVQAWVESLRGFEQERIGLAELHPDVFATAPRLDIVHQVAIWQRNFRRISYANTKTRAE 114
Query: 112 VERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEE 148
V GRKPW QKG G R L+ G GE EE
Sbjct: 115 VSGGGRKPWQQKGSGRARHGSIRSPLWRG-GEWATEE 150
>gi|156405170|ref|XP_001640605.1| predicted protein [Nematostella vectensis]
gi|156227740|gb|EDO48542.1| predicted protein [Nematostella vectensis]
Length = 299
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 120/278 (43%), Gaps = 54/278 (19%)
Query: 15 TFGFRRPAILDFLWFNDFTSNKSEILHETKEFQNAFLQPRQAWVENLDTTEEKHFGFVNL 74
+G P++ +F+ F + S I AWV + ++K G + L
Sbjct: 60 CYGVFSPSVCNFIAERSFENKGSSI---------------HAWVTSF--KDDKSLGMIEL 102
Query: 75 HPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERLDGKRR 134
+ +FG PR+D++ + WQ+ + K +EV GRKPWPQKGL + G R
Sbjct: 103 NDFVFGENPRIDILHRVVVWQRAKRRAGTACVKDRSEVRGGGRKPWPQKGLNKARQGSIR 162
Query: 135 PRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRILPVMVHIVVGLTS 194
+ G G + P LP V +GL
Sbjct: 163 APHFRGGG--------------------------VVHGPKPRSYEYTLPKKVR-RMGLRV 195
Query: 195 TLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDNTDYMERNISIVTDQI 254
LS++L Q DLHIV+ ++D + L ++++R W +VL VD + ER D
Sbjct: 196 ALSVRLAQGDLHIVESFD-DIEDDQDLMPILDQRGWQSAVL-VDGSPN-ERLFEAAADLD 252
Query: 255 KHYNIMPAYGEN----NMLKHDTLVITVDALKQIEDKL 288
K + Y EN ++L L++++DA+KQ+E++L
Sbjct: 253 K---VDVFYSENVNVYSILLRHNLILSLDAVKQLEERL 287
>gi|357977005|ref|ZP_09140976.1| 50S ribosomal protein L4 [Sphingomonas sp. KC8]
Length = 208
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 103/228 (45%), Gaps = 30/228 (13%)
Query: 63 TTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQ 122
T + K G + L ++FGL PR D++ + WQ + + T+ ++V R+G+K Q
Sbjct: 7 TLDAKASGDIELADEVFGLDPRADILHRVVTWQLEKRRGTARGTRERSDVARSGKKFGRQ 66
Query: 123 KGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRIL 182
KG G RR ++ G G+ + NP L
Sbjct: 67 KGGGTARHGDRRAPVFIGGGKAHGARVRD---------------------FNPS-----L 100
Query: 183 PVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDNTDY 242
V +GL LS K +L IV L + K L +E+ +G L +D D
Sbjct: 101 NKKVR-TLGLKMALSAKAKDGNLIIVDALDVAEGKTKVLATQLEKLGFGAKALVIDG-DA 158
Query: 243 MERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKL 288
+ + ++ + +K N++PA G N ++LKHDTLV+T A++++E +L
Sbjct: 159 LNVSFALASGNLKGVNLLPAIGANVYDILKHDTLVLTRAAVEKLEARL 206
>gi|441628993|ref|XP_003275683.2| PREDICTED: 39S ribosomal protein L4, mitochondrial [Nomascus
leucogenys]
Length = 215
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 72/154 (46%), Gaps = 17/154 (11%)
Query: 152 EEEEEEEEEEEEEEEEEITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDL 211
EE E E+ P +LP+ V +GL L+IKL QDDLHI+ L
Sbjct: 26 EEAARPTENPEQVARGVAHGPRGPTSYYYMLPMKVR-ALGLKVALTIKLAQDDLHIMDSL 84
Query: 212 VLPVDDPKYLENLVEERCWGPSVLFVDNTDYMERNISIVTDQIKHYNIMPAYGE------ 265
LP DP+YL L R WG SVL VD + +R + +Q+ ++ A
Sbjct: 85 ELPTGDPQYLTELAHYRRWGNSVLLVDLSQESQRQQVMSWEQLLGQRLLQATSGQAGSGP 144
Query: 266 ----------NNMLKHDTLVITVDALKQIEDKLL 289
++MLKH TLV+T+ + +EDKLL
Sbjct: 145 GLLGPQSLNVHSMLKHQTLVLTLPTVAFLEDKLL 178
>gi|302772867|ref|XP_002969851.1| hypothetical protein SELMODRAFT_227946 [Selaginella moellendorffii]
gi|300162362|gb|EFJ28975.1| hypothetical protein SELMODRAFT_227946 [Selaginella moellendorffii]
Length = 215
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 102/232 (43%), Gaps = 30/232 (12%)
Query: 65 EEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKG 124
E++ G V + DIF + R D++ ++WQ+ + TK EV + RK QKG
Sbjct: 12 EQEDKGTVTIAGDIFDVPIRKDIVHHVVKWQRAKRRKGTHSTKTRGEVAGSTRKIHKQKG 71
Query: 125 LIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRILPV 184
+ G RR + G G + E + ++
Sbjct: 72 TGKARHGSRRAPQFRGGGVAHGPKPRSYEYKLNKKVRR---------------------- 109
Query: 185 MVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDNTDYME 244
+GL LS ++ + L + ++ LP + L LV VL VD + M
Sbjct: 110 -----LGLKIALSARVAERKLMLFDNVDLPTHKTRQLMKLVPN-LGCRRVLIVDGVEKMG 163
Query: 245 RNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLLLALNR 294
R I++ +K N++PA G N ++L HDTLV++V A+++IED+L +NR
Sbjct: 164 REITLACRNVKEVNVIPAKGLNVYSILLHDTLVMSVAAVREIEDRLHTPINR 215
>gi|332187850|ref|ZP_08389584.1| ribosomal L4/L1 family protein [Sphingomonas sp. S17]
gi|332012200|gb|EGI54271.1| ribosomal L4/L1 family protein [Sphingomonas sp. S17]
Length = 208
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 101/219 (46%), Gaps = 30/219 (13%)
Query: 72 VNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERLDG 131
+ L+ ++FGL PR D++ + WQ + + T+ +V R+G+K QKG G
Sbjct: 16 IELNDEVFGLDPRADILHRVVTWQLEKRRATARGTRERADVARSGKKLGRQKGGGVARHG 75
Query: 132 KRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRILPVMVHIVVG 191
RR ++ G G+ + NP GL + + + G
Sbjct: 76 DRRAPVFIGGGKAHGARVRD---------------------FNP-GLNKKVRAL-----G 108
Query: 192 LTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDNTDYMERNISIVT 251
L LS L ++ DL + + K L+ + + +G + L +D D +E + ++
Sbjct: 109 LKMALSSHAKAGSLIVMNDLAVEGNKTKTLQGDLVKLGFGKTALVIDG-DAVETSFALAA 167
Query: 252 DQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKL 288
+K N++PA G N ++LKHDTLV+T A++++E +
Sbjct: 168 GNLKEINVLPAAGANVYDILKHDTLVLTRSAVEKLEARF 206
>gi|196006758|ref|XP_002113245.1| hypothetical protein TRIADDRAFT_27010 [Trichoplax adhaerens]
gi|190583649|gb|EDV23719.1| hypothetical protein TRIADDRAFT_27010, partial [Trichoplax
adhaerens]
Length = 220
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 89/208 (42%), Gaps = 30/208 (14%)
Query: 84 RLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERLDGKRRPRLYTGKGE 143
R+D++ + WQ + TK EV GRKPWPQKG G R + G G
Sbjct: 2 RIDILHRYVVWQLAKRRAGTAKTKNRGEVRGGGRKPWPQKGSGRARQGSIRAPHFRGGG- 60
Query: 144 EKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQD 203
P P V + + LS+K Q
Sbjct: 61 -------------------------TVHGPRPRSYDFTFPRKVR-SMAIRVALSVKFAQG 94
Query: 204 DLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDNTDYMERNISIVTDQIKHYNIMPAY 263
DL+IV L + L++L+++R W S L VD Y++ N+ + I+ +++P+Y
Sbjct: 95 DLYIVDSFGLETHKTQNLKDLLDQRNW-YSALLVDGNTYVDENLRLAARNIQKCDVLPSY 153
Query: 264 GEN--NMLKHDTLVITVDALKQIEDKLL 289
N MLK LV+++ ALK ++++L+
Sbjct: 154 ALNVHMMLKRHALVLSLPALKILQERLV 181
>gi|302807160|ref|XP_002985293.1| hypothetical protein SELMODRAFT_181558 [Selaginella moellendorffii]
gi|300147121|gb|EFJ13787.1| hypothetical protein SELMODRAFT_181558 [Selaginella moellendorffii]
Length = 215
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 102/232 (43%), Gaps = 30/232 (12%)
Query: 65 EEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKG 124
E++ G V + DIF + R D++ ++WQ+ + TK EV + RK QKG
Sbjct: 12 EQEDKGTVTIAGDIFDVPIRKDIVHHVVKWQRAKRRKGTHSTKTRGEVAGSTRKINKQKG 71
Query: 125 LIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRILPV 184
+ G RR + G G + E + ++
Sbjct: 72 TGKARHGSRRAPQFRGGGVAHGPKPRSYEYKLNKKVRR---------------------- 109
Query: 185 MVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDNTDYME 244
+GL LS ++ + L + ++ LP + L LV VL VD + M
Sbjct: 110 -----LGLKIALSARVAERKLMLFDNVDLPTHKTRQLMKLVPN-LGCRRVLIVDGVEKMG 163
Query: 245 RNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLLLALNR 294
R I++ +K N++PA G N ++L HDTLV++V A+++IED+L +NR
Sbjct: 164 REITLACRNVKEVNVIPAKGLNVYSILLHDTLVMSVAAVREIEDRLHTPINR 215
>gi|226491762|ref|NP_001147335.1| LOC100280943 [Zea mays]
gi|195610184|gb|ACG26922.1| 50S ribosomal protein L4 [Zea mays]
Length = 293
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 100/227 (44%), Gaps = 30/227 (13%)
Query: 70 GFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERL 129
GF+ L D+F + R D++ + WQ + TK +EV TGRKP+PQKG +
Sbjct: 95 GFMVLDGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPYPQKGTGKAR 154
Query: 130 DGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRILPVMVHIV 189
G R + G + + +++
Sbjct: 155 HGTLRGAQFRGGATMHGPKPRSHAIKLQKKVRR--------------------------- 187
Query: 190 VGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDNTDYMERNISI 249
+GL LS + + L I +DL +P K + + + VL VD D +++ + +
Sbjct: 188 LGLKIALSARTAEGKLLIFEDLEVPSHKTKNIVQYIRQMDDSKKVLLVDGGD-IDKKLKL 246
Query: 250 VTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLLLALNR 294
T + + N++P+ G N ++L+HDTLV+T A+ +I +++ +NR
Sbjct: 247 ATQNLHYVNVLPSIGLNVYSILQHDTLVMTRAAINRIVERMHTPINR 293
>gi|414873447|tpg|DAA52004.1| TPA: 50S ribosomal protein L4 [Zea mays]
Length = 293
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 100/227 (44%), Gaps = 30/227 (13%)
Query: 70 GFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERL 129
GF+ L D+F + R D++ + WQ + TK +EV TGRKP+PQKG +
Sbjct: 95 GFMVLDGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPYPQKGTGKAR 154
Query: 130 DGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRILPVMVHIV 189
G R + G + + +++
Sbjct: 155 HGTLRGAQFRGGATMHGPKPRSHAIKLQKKVRR--------------------------- 187
Query: 190 VGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDNTDYMERNISI 249
+GL LS + + L I +DL +P K + + + VL VD D +++ + +
Sbjct: 188 LGLKIALSARTAEGKLLIFEDLEVPSHKTKNIVQYIRQMDDSKKVLLVDGGD-IDKKLKL 246
Query: 250 VTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLLLALNR 294
T + + N++P+ G N ++L+HDTLV+T A+ +I +++ +NR
Sbjct: 247 ATQNLHYVNVLPSIGLNVYSILQHDTLVMTRAAINRIVERMHTPINR 293
>gi|357156335|ref|XP_003577421.1| PREDICTED: 50S ribosomal protein L4-like [Brachypodium distachyon]
Length = 289
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 98/227 (43%), Gaps = 30/227 (13%)
Query: 70 GFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERL 129
GF+ L D+F + R D++ + WQ + TK +EV TGRKP+ QKG
Sbjct: 91 GFMVLDGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPYAQKGTGRAR 150
Query: 130 DGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRILPVMVHIV 189
G R + G + + +++
Sbjct: 151 HGTLRGCQFRGGATMHGPKPRSHAFKLQKKVRR--------------------------- 183
Query: 190 VGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDNTDYMERNISI 249
+GL LS + + L I DL LP K + +++ VL VD D +++ + +
Sbjct: 184 LGLKIALSARTAEGKLCIFDDLDLPSHKTKNIVQYIKQMDETKKVLLVDGGD-IDKKLKL 242
Query: 250 VTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLLLALNR 294
T + + N++P+ G N ++L+HDTLV+T A+ +I +++ +NR
Sbjct: 243 ATQNLHYVNVIPSIGLNVYSILQHDTLVMTRAAINRIVERMHTPINR 289
>gi|359494830|ref|XP_003634850.1| PREDICTED: 50S ribosomal protein L4-like [Vitis vinifera]
gi|297741766|emb|CBI32995.3| unnamed protein product [Vitis vinifera]
Length = 315
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 96/227 (42%), Gaps = 30/227 (13%)
Query: 70 GFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERL 129
GF+ L D+F + R D++ + WQ + TK +EV TGRKPW QKG
Sbjct: 117 GFMVLAGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPWRQKGTGRAR 176
Query: 130 DGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRILPVMVHIV 189
G R + G + + ++
Sbjct: 177 HGTLRGPQFRGGAIMHGPKPRSHAIKLNKKVRR--------------------------- 209
Query: 190 VGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDNTDYMERNISI 249
+GL LS + + L + DL +P K + N V+E +L VD E+ + +
Sbjct: 210 LGLKIALSARTAEGKLLVFDDLEVPSHKTKNIVNYVKEMENTKKLLLVDGGPITEK-LKL 268
Query: 250 VTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLLLALNR 294
T + + N++P+ G N ++L HDTLV++ DA+ +I +++ +NR
Sbjct: 269 ATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVNKIVERMHTPINR 315
>gi|393724013|ref|ZP_10343940.1| 50S ribosomal protein L4 [Sphingomonas sp. PAMC 26605]
Length = 208
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 97/219 (44%), Gaps = 30/219 (13%)
Query: 72 VNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERLDG 131
V L+ ++FGL PR D++ + WQ + + T+ ++V RTG+K QKG G
Sbjct: 16 VELNDEVFGLDPRADILHRVVTWQLEKRRATASGTRERSDVARTGKKFGRQKGGGTARHG 75
Query: 132 KRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRILPVMVHIVVG 191
RR ++ G G+ + + NP GL + + + G
Sbjct: 76 DRRAPIFVGGGKAHGQRTRD---------------------FNP-GLNKKIRAL-----G 108
Query: 192 LTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDNTDYMERNISIVT 251
L LS L ++ L + + K L + G + L +D D ++ + ++
Sbjct: 109 LKMALSTHAQAGTLVVMDSLGVAENKTKTLIADWAKLGTGKTALVIDG-DMVDTSFALAA 167
Query: 252 DQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKL 288
+ N+MPA G N ++LKHDTLV+T A++ +E +
Sbjct: 168 GNLHTINVMPAAGANVYDILKHDTLVLTRAAVEMLEARF 206
>gi|326524247|dbj|BAK00507.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 289
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 100/227 (44%), Gaps = 30/227 (13%)
Query: 70 GFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERL 129
GF+ L D+F + R D++ + WQ + TK +EV TGRKP+ QKG
Sbjct: 91 GFMVLDGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPYKQKGTGRAR 150
Query: 130 DGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRILPVMVHIV 189
G R + G + + +++
Sbjct: 151 HGTLRGCQFRGGATMHGPKPRSHAFKLQKKVRR--------------------------- 183
Query: 190 VGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDNTDYMERNISI 249
+GL LS + + L I +DL +P K + +++ +L VD D +++ + +
Sbjct: 184 LGLKIALSARTAEGKLCIFEDLEVPSHKTKNIVQYIKQMDDTKKILLVDGGD-IDKKLKL 242
Query: 250 VTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLLLALNR 294
T + + N++P+ G N ++L+HDTLV+T DA+ +I +++ ++R
Sbjct: 243 ATQNLHYVNVIPSIGLNVYSILQHDTLVMTRDAINRIVERMHTPISR 289
>gi|223944103|gb|ACN26135.1| unknown [Zea mays]
Length = 197
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 97/223 (43%), Gaps = 30/223 (13%)
Query: 74 LHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERLDGKR 133
L D+F + R D++ + WQ + TK +EV TGRKP+PQKG + G
Sbjct: 3 LDGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPYPQKGTGKARHGTL 62
Query: 134 RPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRILPVMVHIVVGLT 193
R + G + + +++ +GL
Sbjct: 63 RGAQFRGGATMHGPKPRSHAIKLQKKVRR---------------------------LGLK 95
Query: 194 STLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDNTDYMERNISIVTDQ 253
LS + + L I +DL +P K + + + VL VD D +++ + + T
Sbjct: 96 IALSARTAEGKLLIFEDLEVPSHKTKNIVQYIRQMDDSKKVLLVDGGD-IDKKLKLATQN 154
Query: 254 IKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLLLALNR 294
+ + N++P+ G N ++L+HDTLV+T A+ +I +++ +NR
Sbjct: 155 LHYVNVLPSIGLNVYSILQHDTLVMTRAAINRIVERMHTPINR 197
>gi|242032629|ref|XP_002463709.1| hypothetical protein SORBIDRAFT_01g004650 [Sorghum bicolor]
gi|241917563|gb|EER90707.1| hypothetical protein SORBIDRAFT_01g004650 [Sorghum bicolor]
Length = 294
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 98/227 (43%), Gaps = 30/227 (13%)
Query: 70 GFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERL 129
GF+ L D+F + R D++ + WQ + TK +EV TGRKP+ QKG
Sbjct: 96 GFMVLDGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPYKQKGTGRAR 155
Query: 130 DGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRILPVMVHIV 189
G R + G + + +++
Sbjct: 156 HGTLRGPQFRGGATMHGPKPRSHAIKLQKKVRR--------------------------- 188
Query: 190 VGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDNTDYMERNISI 249
+GL LS + + L + +DL +P K + + + VL VD D +++ + +
Sbjct: 189 LGLKIALSARTAEGKLLVFEDLEVPSHKTKNIVQYIRQMDDTKKVLLVDGGD-IDKKLKL 247
Query: 250 VTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLLLALNR 294
T + + N++P+ G N ++L+HDTLV+T A+ +I +++ +NR
Sbjct: 248 ATQNLHYVNVLPSIGLNVYSILQHDTLVMTRAAINRIVERMHTPINR 294
>gi|147767815|emb|CAN77922.1| hypothetical protein VITISV_027648 [Vitis vinifera]
Length = 278
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 96/227 (42%), Gaps = 30/227 (13%)
Query: 70 GFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERL 129
GF+ L D+F + R D++ + WQ + TK +EV TG+KPW QKG
Sbjct: 80 GFMXLAGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWRQKGTGRAR 139
Query: 130 DGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRILPVMVHIV 189
G R + G + + ++
Sbjct: 140 HGTLRGPQFRGGAIMHGPKPRSHAIKLNKKVRR--------------------------- 172
Query: 190 VGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDNTDYMERNISI 249
+GL LS + + L + DL +P K + N V+E +L VD E+ + +
Sbjct: 173 LGLKIALSARTAEGKLLVFDDLEVPSHKTKNIVNYVKEMENXKKLLLVDGGPITEK-LKL 231
Query: 250 VTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLLLALNR 294
T + + N++P+ G N ++L HDTLV++ BA+ +I +++ +NR
Sbjct: 232 ATQNLHYVNVLPSIGLNVYSILLHDTLVMSRBAVNKIVERMHTPINR 278
>gi|218186871|gb|EEC69298.1| hypothetical protein OsI_38360 [Oryza sativa Indica Group]
Length = 197
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 99/223 (44%), Gaps = 30/223 (13%)
Query: 74 LHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERLDGKR 133
L D+F + R D++ + WQ + TK+ +EV TGRKP+ QKG G
Sbjct: 3 LDGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKIISEVSGTGRKPYKQKGTGRARHGTL 62
Query: 134 RPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRILPVMVHIVVGLT 193
R + G + + +++ +GL
Sbjct: 63 RGPQFRGGATMHGPKPRSHTIKLQKKVRR---------------------------LGLK 95
Query: 194 STLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDNTDYMERNISIVTDQ 253
LS + + L + +DL +P K + + + + VL VD D +++ + + T
Sbjct: 96 IALSARTAEGKLLVFEDLEVPSHKTKNVVSYISQMEDTKKVLLVDGGD-IDKKLKLATQN 154
Query: 254 IKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLLLALNR 294
+ + N++P+ G N ++L+HDTLV+T DA+ +I +++ + +NR
Sbjct: 155 LHYVNVLPSIGLNVYSILQHDTLVMTRDAVNRIVERMHIPINR 197
>gi|222616220|gb|EEE52352.1| hypothetical protein OsJ_34399 [Oryza sativa Japonica Group]
Length = 353
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 98/227 (43%), Gaps = 30/227 (13%)
Query: 70 GFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERL 129
GF+ L D+F + R D++ + WQ + TK +EV TGRKP+ QKG
Sbjct: 155 GFMVLDGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPYNQKGTGRAR 214
Query: 130 DGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRILPVMVHIV 189
G R + G + + +++
Sbjct: 215 HGTLRGPQFRGGATMHGPKPRSHAIKLQKKVRR--------------------------- 247
Query: 190 VGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDNTDYMERNISI 249
+GL LS + + L + DL +P K + + + VL VD D +++ + +
Sbjct: 248 LGLKIALSARTAEGKLLVFDDLEVPSHKTKNIVQYIGQMEGTKKVLLVDGGD-IDKKLKL 306
Query: 250 VTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLLLALNR 294
T + + N++P+ G N ++L+HDTLV+T +A+ +I +++ ++R
Sbjct: 307 ATQNLHYVNVLPSIGLNVYSILQHDTLVMTRNAINRIVERMHTPISR 353
>gi|115486043|ref|NP_001068165.1| Os11g0585700 [Oryza sativa Japonica Group]
gi|77551649|gb|ABA94446.1| ribosomal protein L4/L1 family protein, expressed [Oryza sativa
Japonica Group]
gi|113645387|dbj|BAF28528.1| Os11g0585700 [Oryza sativa Japonica Group]
Length = 286
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 98/227 (43%), Gaps = 30/227 (13%)
Query: 70 GFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERL 129
GF+ L D+F + R D++ + WQ + TK +EV TGRKP+ QKG
Sbjct: 88 GFMVLDGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPYNQKGTGRAR 147
Query: 130 DGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRILPVMVHIV 189
G R + G + + +++
Sbjct: 148 HGTLRGPQFRGGATMHGPKPRSHAIKLQKKVRR--------------------------- 180
Query: 190 VGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDNTDYMERNISI 249
+GL LS + + L + DL +P K + + + VL VD D +++ + +
Sbjct: 181 LGLKIALSARTAEGKLLVFDDLEVPSHKTKNIVQYIGQMEGTKKVLLVDGGD-IDKKLKL 239
Query: 250 VTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLLLALNR 294
T + + N++P+ G N ++L+HDTLV+T +A+ +I +++ ++R
Sbjct: 240 ATQNLHYVNVLPSIGLNVYSILQHDTLVMTRNAINRIVERMHTPISR 286
>gi|242072798|ref|XP_002446335.1| hypothetical protein SORBIDRAFT_06g014470 [Sorghum bicolor]
gi|241937518|gb|EES10663.1| hypothetical protein SORBIDRAFT_06g014470 [Sorghum bicolor]
Length = 333
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 98/227 (43%), Gaps = 30/227 (13%)
Query: 70 GFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERL 129
GF+ L D+F + R D++ + WQ + TK +EV TGRKP+ QKG
Sbjct: 135 GFMVLDGDVFDVPIRKDIVHRVVRWQLAKRQQGTHSTKTISEVSGTGRKPYKQKGTGRAR 194
Query: 130 DGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRILPVMVHIV 189
G R + G + + +++
Sbjct: 195 HGTLRGPQFRGGATMHGPKPRSHAIKLQKKVRR--------------------------- 227
Query: 190 VGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDNTDYMERNISI 249
+GL LS + + L + +DL +P K + + + VL VD D +++ + +
Sbjct: 228 LGLKIALSARTAEGKLLVFEDLEVPSHKTKNIVQYIRQMDDTKKVLLVDGGD-IDKKLKL 286
Query: 250 VTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLLLALNR 294
T + + N++P+ G N ++L+HDTLV++ A+ +I +++ +NR
Sbjct: 287 ATQNLHYVNVLPSIGLNVYSILQHDTLVMSRAAINRIVERMHTPINR 333
>gi|399035013|ref|ZP_10732567.1| 50S ribosomal protein L4, bacterial/organelle [Rhizobium sp. CF122]
gi|398067225|gb|EJL58764.1| 50S ribosomal protein L4, bacterial/organelle [Rhizobium sp. CF122]
Length = 206
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 95/231 (41%), Gaps = 31/231 (13%)
Query: 60 NLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKP 119
N+ T E K G V+L IFGL PR D++ I WQ K K +V RTG K
Sbjct: 4 NVKTLEGKDAGKVSLSDAIFGLEPREDILARVIRWQLAKKQQGTHQAKGRADVSRTGAKM 63
Query: 120 WPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLC 179
+ QKG R + G G+ E +
Sbjct: 64 YKQKGTGRARHHSARAPQFRGGGKAHGPVARSHEHD------------------------ 99
Query: 180 RILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDN 239
LP V +GL LS KL DD+ I+ +LV K L ++ E + LF+
Sbjct: 100 --LPKKVR-ALGLRHALSAKLKSDDVIIIDNLVAAEAKTKALASVFETLGL-TNALFIGG 155
Query: 240 TDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKL 288
+ ++ N + I + +++P G N ++++ LV++ A++ +E++
Sbjct: 156 AE-LDGNFKLAAKNIPNIDVLPIQGINVYDIVRRGKLVLSKAAVEALEERF 205
>gi|409436835|ref|ZP_11263994.1| 50S ribosomal subunit protein L4 [Rhizobium mesoamericanum STM3625]
gi|408751309|emb|CCM75148.1| 50S ribosomal subunit protein L4 [Rhizobium mesoamericanum STM3625]
Length = 206
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 93/231 (40%), Gaps = 31/231 (13%)
Query: 60 NLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKP 119
N+ T E K G V+L IFGL PR D++ I WQ K K +V RTG K
Sbjct: 4 NVKTLEGKDAGKVSLSDAIFGLEPREDILARVIRWQLAKKQQGTHQAKGRADVSRTGAKM 63
Query: 120 WPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLC 179
+ QKG R + G G+ E +
Sbjct: 64 YKQKGTGRARHHSARAPQFRGGGKAHGPVARSHEHD------------------------ 99
Query: 180 RILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDN 239
LP V +GL LS KL DD+ I+ LV K L + E + LF+
Sbjct: 100 --LPKKVR-ALGLRHALSAKLKSDDVIIIDSLVAAEAKTKALASAFETLGL-TNALFIGG 155
Query: 240 TDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKL 288
+ ++ N + I + +++P G N ++++ LV++ A++ +E++
Sbjct: 156 AE-LDGNFKLAAQNIPNIDVLPIQGINVYDIVRRGKLVLSKAAVEALEERF 205
>gi|407788310|ref|ZP_11135442.1| 50S ribosomal protein L4 [Celeribacter baekdonensis B30]
gi|407197591|gb|EKE67645.1| 50S ribosomal protein L4 [Celeribacter baekdonensis B30]
Length = 206
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 91/221 (41%), Gaps = 31/221 (14%)
Query: 70 GFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERL 129
G ++L +FGL PR D++ + WQ+ K +EV + +K + QKG
Sbjct: 14 GTLDLDEALFGLEPRADILHRVVRWQRNNAQAGTHKVKTRSEVSYSTKKIYRQKGTGGAR 73
Query: 130 DGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRILPVMVHIV 189
G R+ ++ G K E ++ +
Sbjct: 74 HGSRKAPIFRKGGIYKGPTPRSHGHELTKKFRK--------------------------- 106
Query: 190 VGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDNTDYMERNISI 249
+GL LS K +L I++D L +L ++E+ W VL +D + ++ N
Sbjct: 107 LGLKHALSAKAGSGNLVILEDAKLAEAKTAFLAKAIKEQGW-KRVLIIDGAE-IDANFKA 164
Query: 250 VTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKL 288
I +I+P G N ++LK DTLV+T A++ +E +L
Sbjct: 165 AAANIAGVDILPTMGANVYDILKRDTLVLTRSAVEALEARL 205
>gi|418937871|ref|ZP_13491458.1| ribosomal protein L4/L1e [Rhizobium sp. PDO1-076]
gi|375055420|gb|EHS51681.1| ribosomal protein L4/L1e [Rhizobium sp. PDO1-076]
Length = 206
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 90/230 (39%), Gaps = 31/230 (13%)
Query: 60 NLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKP 119
N+ T E K G V+L DIFGL PR D+I I WQ K TK EV RTG K
Sbjct: 4 NVKTLEGKEAGKVSLSDDIFGLDPREDIIARMIRWQLANKRQGTHKTKTRAEVSRTGAKM 63
Query: 120 WPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLC 179
+ QKG R + G G+ +
Sbjct: 64 YKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHAHD------------------------ 99
Query: 180 RILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDN 239
LP V + L LS KL +DL I+ L+ K L E G + V
Sbjct: 100 --LPKKVR-ALALRHALSAKLKSEDLIIIDQLISAEAKTKALVGTFE--LLGLTNALVIG 154
Query: 240 TDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDK 287
++ N + I + +++P G N ++L+ LV++ A++ +E++
Sbjct: 155 GAEIDSNFKLAAANIPNIDVLPVQGINVYDILRRGKLVLSKAAVEALEER 204
>gi|89053075|ref|YP_508526.1| 50S ribosomal protein L4 [Jannaschia sp. CCS1]
gi|109893599|sp|Q28UW1.1|RL4_JANSC RecName: Full=50S ribosomal protein L4
gi|88862624|gb|ABD53501.1| LSU ribosomal protein L4P [Jannaschia sp. CCS1]
Length = 206
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 91/226 (40%), Gaps = 31/226 (13%)
Query: 65 EEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKG 124
+ K G V+L +FGL PR D++ + WQ+ K EV + +K + QKG
Sbjct: 9 DGKKAGSVDLDEALFGLEPRADILHRVVRWQRNNAQAGTHKVKTRREVSYSTKKIYRQKG 68
Query: 125 LIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRILPV 184
G R ++ G G K E ++ +
Sbjct: 69 TGGARHGARSAPIFRGGGVYKGPTPRSHGHELTKKFRK---------------------- 106
Query: 185 MVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDNTDYME 244
+GL LS K + L +++ + + L V+E W L +D +D ++
Sbjct: 107 -----LGLRHALSAKAAEGRLVVIESIAMDEAKTSALAKQVKEMGW-KRALIIDGSD-VD 159
Query: 245 RNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKL 288
N + I+ +++P G N ++LK DTLVIT ++ +E +L
Sbjct: 160 ANFAQAARNIEGLDVLPTMGANVYDILKRDTLVITKAGVEALEARL 205
>gi|440226338|ref|YP_007333429.1| 50S ribosomal protein L4/L1 [Rhizobium tropici CIAT 899]
gi|440037849|gb|AGB70883.1| 50S ribosomal protein L4/L1 [Rhizobium tropici CIAT 899]
Length = 206
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 92/231 (39%), Gaps = 31/231 (13%)
Query: 60 NLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKP 119
N+ T E K G V+L IFGL PR D++ + WQ K K +V RTG K
Sbjct: 4 NVKTLEGKDAGKVSLSDAIFGLEPREDILARVVRWQLAKKQQGTHQAKGRADVARTGAKM 63
Query: 120 WPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLC 179
+ QKG R + G G+ E +
Sbjct: 64 YKQKGTGRARHHSARAPQFRGGGKAHGPVARSHEHD------------------------ 99
Query: 180 RILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDN 239
LP V +GL LS K +D+ ++ +LV K L E + LF+
Sbjct: 100 --LPKKVR-ALGLRHALSAKFKAEDVIVIDNLVATEAKTKALAGAFETLGL-TNALFIGG 155
Query: 240 TDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKL 288
+ ++ N + I + +++P G N ++L+ LV++ A++ +E++
Sbjct: 156 AE-LDSNFKLAAQNIPNIDVLPVQGINVYDILRRGKLVLSKAAVEALEERF 205
>gi|325293335|ref|YP_004279199.1| 50S ribosomal protein L4 [Agrobacterium sp. H13-3]
gi|418408668|ref|ZP_12981984.1| 50S ribosomal protein L4 [Agrobacterium tumefaciens 5A]
gi|325061188|gb|ADY64879.1| 50S ribosomal protein L4 [Agrobacterium sp. H13-3]
gi|358005582|gb|EHJ97908.1| 50S ribosomal protein L4 [Agrobacterium tumefaciens 5A]
Length = 206
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 90/230 (39%), Gaps = 31/230 (13%)
Query: 60 NLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKP 119
N+ T E K G V+L +IFGL PR D++ + WQ K TK EV RTG K
Sbjct: 4 NVKTLEGKDAGKVSLSDEIFGLDPRQDILARMVRWQLAKKQQGTHKTKTRAEVSRTGAKM 63
Query: 120 WPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLC 179
+ QKG R + G G+ +
Sbjct: 64 YKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHAHD------------------------ 99
Query: 180 RILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDN 239
LP V + L LS KL +DL IV LV K L L G + V
Sbjct: 100 --LPKKVR-ALALRHALSAKLKAEDLIIVDQLVASEAKTKAL--LGSFASLGLTNALVIG 154
Query: 240 TDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDK 287
++ N + I + +++P G N ++L+ LV++ A++ +E++
Sbjct: 155 GAELDGNFKLAAQNIPNVDVLPVQGINVYDILRRGKLVLSKAAVEALEER 204
>gi|405376543|ref|ZP_11030497.1| 50S ribosomal protein L4, bacterial/organelle [Rhizobium sp. CF142]
gi|397326870|gb|EJJ31181.1| 50S ribosomal protein L4, bacterial/organelle [Rhizobium sp. CF142]
Length = 206
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 93/231 (40%), Gaps = 31/231 (13%)
Query: 60 NLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKP 119
N+ T E K G V+L IFGL PR D++ I WQ K K +V RTG K
Sbjct: 4 NVKTLEGKDAGKVSLSEAIFGLEPREDILARVIRWQLAKKQQGTHQAKGRADVWRTGAKM 63
Query: 120 WPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLC 179
+ QKG R + G G+ E +
Sbjct: 64 YKQKGTGRARHHSARAPQFRGGGKAHGPVARSHEHD------------------------ 99
Query: 180 RILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDN 239
LP V +GL LS K+ D+L I+ DLV K L + + LF+
Sbjct: 100 --LPKKVR-ALGLRHALSAKIKADELIIIDDLVANEAKTKALAGVFATLGL-TNALFIGG 155
Query: 240 TDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKL 288
+ ++ N + I + +++P G N ++++ LV++ A++ +E++
Sbjct: 156 AE-LDGNFKLAAQNIPNIDVLPIQGINVYDIVRRGKLVLSKAAVEALEERF 205
>gi|254449666|ref|ZP_05063103.1| ribosomal protein L4/L1 family [Octadecabacter arcticus 238]
gi|198264072|gb|EDY88342.1| ribosomal protein L4/L1 family [Octadecabacter arcticus 238]
Length = 205
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 88/226 (38%), Gaps = 32/226 (14%)
Query: 65 EEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKG 124
+ K G V L IFGL PR+D++ + WQ+ K +EV+ + +K + QKG
Sbjct: 9 DGKAAGSVELDEAIFGLEPRIDILHRVVRWQRNNAQAGTHKVKTRSEVKYSTKKIYRQKG 68
Query: 125 LIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRILPV 184
G R ++ G G K E ++ +
Sbjct: 69 TGGARHGARSAPIFRGGGIYKGPTPRSHGHELTKKFRK---------------------- 106
Query: 185 MVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDNTDYME 244
+GL LS K+ +L IV + + L V W L +D T +
Sbjct: 107 -----LGLRHALSAKVAAGELVIVDSIDMKDAKTSALAKQVGALGW-KRCLIIDAT--VN 158
Query: 245 RNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKL 288
N ++ I N +P G N ++L+ DTLV+T ++ +E +L
Sbjct: 159 ENFAVAARNITTINALPVMGANVYDILRSDTLVLTKAGVEALEARL 204
>gi|76156125|gb|AAX27356.2| SJCHGC04542 protein [Schistosoma japonicum]
Length = 167
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 51/95 (53%), Gaps = 13/95 (13%)
Query: 54 RQAWVENL-------DTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHT 106
R AW+E L + + G V+LHPDIF + PR+D++ N+ WQ Y+ + D
Sbjct: 74 RLAWLETLKPLGLSQSSNTQSLVGMVDLHPDIFAVFPRIDLVHKNLYWQAHYRLI--DWR 131
Query: 107 KVTNEVE---RTGRKPWPQKGLIERLDGKRRPRLY 138
+T E T +KPWPQK L E+LD R+Y
Sbjct: 132 CITTRAELPYGTRKKPWPQKKL-EKLDMVIVVRIY 165
>gi|254438218|ref|ZP_05051712.1| ribosomal protein L4/L1 family [Octadecabacter antarcticus 307]
gi|198253664|gb|EDY77978.1| ribosomal protein L4/L1 family [Octadecabacter antarcticus 307]
Length = 205
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 89/226 (39%), Gaps = 32/226 (14%)
Query: 65 EEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKG 124
+ K G V L IFGL PR+D++ + WQ+ K +EV+ + +K + QKG
Sbjct: 9 DGKAAGSVELDEAIFGLEPRIDILHRVVRWQRNNAQAGTHKVKTRSEVKYSTKKIYRQKG 68
Query: 125 LIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRILPV 184
G R ++ G G K E ++ +
Sbjct: 69 TGGARHGARSAPIFRGGGIYKGPTPRSHGHELTKKFRK---------------------- 106
Query: 185 MVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDNTDYME 244
+GL LS K+ +L IV ++ + L V W L +D T +
Sbjct: 107 -----LGLRHALSAKVAAGELVIVDNIDIKDAKTSALAKTVGALGW-KRCLIIDAT--VN 158
Query: 245 RNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKL 288
+ ++ I N +P G N ++L+ DTLV+T ++ +E +L
Sbjct: 159 EDFAVAARNITSINALPVMGANVYDILRSDTLVLTKAGVEALEARL 204
>gi|15889241|ref|NP_354922.1| 50S ribosomal protein L4 [Agrobacterium fabrum str. C58]
gi|46576833|sp|Q8UE19.1|RL4_AGRT5 RecName: Full=50S ribosomal protein L4
gi|15157068|gb|AAK87707.1| 50S ribosomal protein L4 [Agrobacterium fabrum str. C58]
Length = 206
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 91/230 (39%), Gaps = 31/230 (13%)
Query: 60 NLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKP 119
N+ T E K G V+L +IFGL PR D++ + WQ K TK +EV RTG K
Sbjct: 4 NVKTLEGKDAGKVSLSDEIFGLDPRQDILARMVRWQLAKKQQGTHKTKNRSEVSRTGAKM 63
Query: 120 WPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLC 179
+ QKG R + G G+ +
Sbjct: 64 YKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHAHD------------------------ 99
Query: 180 RILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDN 239
LP V + L LS KL ++L IV LV K L L G + V
Sbjct: 100 --LPKKVR-ALALRHALSAKLKAEELIIVDQLVASEAKTKAL--LGSFASLGLTNALVIG 154
Query: 240 TDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDK 287
++ N + I + +++P G N ++L+ LV++ A++ +E++
Sbjct: 155 GAELDGNFKLAAQNIPNVDVLPVQGINVYDILRRGKLVLSKAAVEALEER 204
>gi|218186003|gb|EEC68430.1| hypothetical protein OsI_36619 [Oryza sativa Indica Group]
Length = 273
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 95/227 (41%), Gaps = 40/227 (17%)
Query: 70 GFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERL 129
GF+ L D+F + R D++ V TK +EV TGRKP+ QKG
Sbjct: 85 GFMVLDGDVFDVPIRKDIV----------HRVGTHSTKTISEVSGTGRKPYNQKGTGRAR 134
Query: 130 DGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRILPVMVHIV 189
G R + G + + +++
Sbjct: 135 HGTLRGPQFRGGATMHGPKPRSHAIKLQKKVRR--------------------------- 167
Query: 190 VGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDNTDYMERNISI 249
+GL LS + + L + DL +P K + + + VL VD D +++ + +
Sbjct: 168 LGLKIALSARTAEGKLLVFDDLEVPSHKTKNIVQYIGQMEGTKKVLLVDGGD-IDKKLKL 226
Query: 250 VTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLLLALNR 294
T + + N++P+ G N ++L+HDTLV+T +A+ +I +++ ++R
Sbjct: 227 ATQNLHYVNVLPSIGLNVYSILQHDTLVMTRNAINRIVERMHTPISR 273
>gi|335036156|ref|ZP_08529483.1| 50S ribosomal protein L4 [Agrobacterium sp. ATCC 31749]
gi|333792047|gb|EGL63417.1| 50S ribosomal protein L4 [Agrobacterium sp. ATCC 31749]
Length = 206
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 91/230 (39%), Gaps = 31/230 (13%)
Query: 60 NLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKP 119
N+ T E K G V+L +IFGL PR D++ + WQ K TK +EV RTG K
Sbjct: 4 NVKTLEGKDAGKVSLSDEIFGLDPRQDILARMVRWQLAKKQQGTHKTKNRSEVSRTGAKM 63
Query: 120 WPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLC 179
+ QKG R + G G+ +
Sbjct: 64 YKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHAHD------------------------ 99
Query: 180 RILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDN 239
LP V + L LS KL ++L I+ LV K L L G + V
Sbjct: 100 --LPKKVR-ALALRHALSAKLKAEELIIIDQLVASEAKTKAL--LGSFASLGLTNALVIG 154
Query: 240 TDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDK 287
++ N + I + +++P G N ++L+ LV++ A++ +E++
Sbjct: 155 GAELDGNFKLAAQNIPNVDVLPVQGINVYDILRRGKLVLSKAAVEALEER 204
>gi|408785477|ref|ZP_11197222.1| 50S ribosomal protein L4 [Rhizobium lupini HPC(L)]
gi|417859621|ref|ZP_12504677.1| 50S ribosomal protein L4 [Agrobacterium tumefaciens F2]
gi|418299388|ref|ZP_12911222.1| 50S ribosomal protein L4 [Agrobacterium tumefaciens CCNWGS0286]
gi|424910713|ref|ZP_18334090.1| 50S ribosomal protein L4, bacterial/organelle [Rhizobium
leguminosarum bv. viciae USDA 2370]
gi|338822685|gb|EGP56653.1| 50S ribosomal protein L4 [Agrobacterium tumefaciens F2]
gi|355535189|gb|EHH04479.1| 50S ribosomal protein L4 [Agrobacterium tumefaciens CCNWGS0286]
gi|392846744|gb|EJA99266.1| 50S ribosomal protein L4, bacterial/organelle [Rhizobium
leguminosarum bv. viciae USDA 2370]
gi|408488625|gb|EKJ96934.1| 50S ribosomal protein L4 [Rhizobium lupini HPC(L)]
Length = 206
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 91/230 (39%), Gaps = 31/230 (13%)
Query: 60 NLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKP 119
N+ T E K G V+L +IFGL PR D++ + WQ K +K +EV RTG K
Sbjct: 4 NVKTLEGKDAGKVSLSDEIFGLDPRQDILARMVRWQLAKKQQGTHKSKNRSEVSRTGAKM 63
Query: 120 WPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLC 179
+ QKG R + G G+ +
Sbjct: 64 YKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHAHD------------------------ 99
Query: 180 RILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDN 239
LP V + L LS KL ++L IV LV K L L G + V
Sbjct: 100 --LPKKVR-ALALRHALSAKLKAEELIIVDQLVASEAKTKAL--LGSFASLGLTNALVIG 154
Query: 240 TDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDK 287
++ N + I + +++P G N ++L+ LV++ A++ +E++
Sbjct: 155 GAELDGNFKLAAQNIPNVDVLPVQGINVYDILRRGKLVLSKAAVEALEER 204
>gi|149020532|gb|EDL78337.1| mitochondrial ribosomal protein L4 (predicted), isoform CRA_c
[Rattus norvegicus]
Length = 157
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 52 QPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNE 111
+P QAWVE+L E++ G LHPD+F PRLD++ WQ+ +K + + TK E
Sbjct: 60 RPVQAWVESLRGFEQERIGLAELHPDVFATTPRLDILHQVAVWQRNFKRISYAKTKTRAE 119
Query: 112 V 112
Sbjct: 120 A 120
>gi|339504869|ref|YP_004692289.1| 50S ribosomal protein L4 [Roseobacter litoralis Och 149]
gi|338758862|gb|AEI95326.1| 50S ribosomal protein L4 [Roseobacter litoralis Och 149]
Length = 205
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 83/221 (37%), Gaps = 32/221 (14%)
Query: 70 GFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERL 129
G V+L +FGL PR D++ + WQ+ K +EV + +K + QKG
Sbjct: 14 GSVDLDEALFGLEPRADILHRVVRWQRNNAQAGTHKVKTRSEVNYSTKKIYRQKGTGGAR 73
Query: 130 DGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRILPVMVHIV 189
G R ++ G G K + E+T GLC
Sbjct: 74 HGARSAPIFRGGGVYK-------------GPKVRSHGHELTKKFRKLGLCH--------- 111
Query: 190 VGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDNTDYMERNISI 249
LS K+ +L I+ D V L V W L +D E +
Sbjct: 112 -----ALSAKMKAGELVIIDD-VSSDGKTSALAKQVANLGW-KRALIIDGATVNE-TFAQ 163
Query: 250 VTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKL 288
I +I+P G N ++LK DTLVIT ++ +E +L
Sbjct: 164 AARNIDGLDILPTMGANVYDILKRDTLVITKAGVEALEARL 204
>gi|209884814|ref|YP_002288671.1| 50S ribosomal protein L4 [Oligotropha carboxidovorans OM5]
gi|337741542|ref|YP_004633270.1| 50S ribosomal protein L4 [Oligotropha carboxidovorans OM5]
gi|386030558|ref|YP_005951333.1| 50S ribosomal protein L4 [Oligotropha carboxidovorans OM4]
gi|226730700|sp|B6JET4.1|RL4_OLICO RecName: Full=50S ribosomal protein L4
gi|209873010|gb|ACI92806.1| ribosomal protein L4/L1 family [Oligotropha carboxidovorans OM5]
gi|336095626|gb|AEI03452.1| 50S ribosomal protein L4 [Oligotropha carboxidovorans OM4]
gi|336099206|gb|AEI07029.1| 50S ribosomal protein L4 [Oligotropha carboxidovorans OM5]
Length = 206
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 88/238 (36%), Gaps = 45/238 (18%)
Query: 60 NLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKP 119
N+ T E K G VNL IFGL PR D+I + WQ + TK E+ RTG+K
Sbjct: 4 NVTTLEGKAAGSVNLSDTIFGLEPRTDIIQRVVNWQLAKRQAGTHKTKGRAEIARTGKKM 63
Query: 120 WPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLC 179
+ QKG G R + G G +
Sbjct: 64 YKQKGTGGARHGSARVPQFRGGGRAFGPVVRSHAYD------------------------ 99
Query: 180 RILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWG-------P 232
LP V +GL LS K KD L V D L++ + G
Sbjct: 100 --LPKKVR-ALGLRHALSAK--------AKDGSLVVLDNAELKDAKTKALIGHFSGLGLT 148
Query: 233 SVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKL 288
S L VD + + + I H +++P G N ++L+ LV+T A+ +E +
Sbjct: 149 SALIVDGAE-VNNGFAQAARNIPHIDVLPIQGINVYDILRRQKLVLTKAAVDALEARF 205
>gi|110678719|ref|YP_681726.1| 50S ribosomal protein L4 [Roseobacter denitrificans OCh 114]
gi|123172736|sp|Q16AF3.1|RL4_ROSDO RecName: Full=50S ribosomal protein L4
gi|109454835|gb|ABG31040.1| ribosomal protein L4 [Roseobacter denitrificans OCh 114]
Length = 205
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 83/221 (37%), Gaps = 32/221 (14%)
Query: 70 GFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERL 129
G V+L +FGL PR D++ + WQ+ K +EV + +K + QKG
Sbjct: 14 GSVDLDEALFGLEPRADILHRVVRWQRNNAQAGTHKVKTRSEVNYSTKKIYRQKGTGGAR 73
Query: 130 DGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRILPVMVHIV 189
G R ++ G G K + E+T GLC
Sbjct: 74 HGARSAPIFRGGGVYK-------------GPKVRSHGHELTKKFRKLGLCH--------- 111
Query: 190 VGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDNTDYMERNISI 249
LS K+ +L I+ D V L V W L +D E +
Sbjct: 112 -----ALSAKMKAGELVII-DEVSSDGKTAALAKQVANLGW-KRALIIDGATVNE-TFAQ 163
Query: 250 VTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKL 288
I +I+P G N ++LK DTLVIT ++ +E +L
Sbjct: 164 AARNIDGLDILPTMGANVYDILKRDTLVITKAGVEALEARL 204
>gi|299135256|ref|ZP_07028447.1| ribosomal protein L4/L1e [Afipia sp. 1NLS2]
gi|298590233|gb|EFI50437.1| ribosomal protein L4/L1e [Afipia sp. 1NLS2]
Length = 206
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 87/232 (37%), Gaps = 33/232 (14%)
Query: 60 NLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKP 119
N+ T E K G VNL +IFGL PR D+I + WQ + K EV RTG+K
Sbjct: 4 NVTTLEGKAAGSVNLSDEIFGLEPRKDIIQRVVNWQLAKRQAGTHKAKGRAEVWRTGKKM 63
Query: 120 WPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLC 179
+ QKG G R + G G +
Sbjct: 64 YKQKGTGGARHGSARVPQFRGGGRAFGPVVRSHAHD------------------------ 99
Query: 180 RILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWG-PSVLFVD 238
LP V +GL LS K L ++ + L D K + G S L VD
Sbjct: 100 --LPKKVR-ALGLRHALSAKAKDGGLVVIDNAEL--KDAKTKALIAHFSGLGLTSALIVD 154
Query: 239 NTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKL 288
+ + + I H +++P G N ++L+ LV+T A+ +E +
Sbjct: 155 GAE-VNNGFAQAARNIPHIDVLPIQGINVYDILRRQKLVLTKAAVDALEARF 205
>gi|126732273|ref|ZP_01748073.1| 50S ribosomal protein L4 [Sagittula stellata E-37]
gi|126707142|gb|EBA06208.1| 50S ribosomal protein L4 [Sagittula stellata E-37]
Length = 205
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 89/233 (38%), Gaps = 35/233 (15%)
Query: 58 VENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGR 117
V NLD G V L +FGL PR D++ + WQ+ K +EV + +
Sbjct: 5 VINLDGGSA---GEVELDEALFGLEPRADILHRVVRWQRNKAQAGTHKVKTRSEVSYSTK 61
Query: 118 KPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCG 177
K + QKG G R+ ++ G K E
Sbjct: 62 KIYRQKGTGGARHGSRKAPIFRKGGIYKGPTPRSHAHE---------------------- 99
Query: 178 LCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFV 237
LP V +GL LS K L IV D + K L V + W L +
Sbjct: 100 ----LPKKVR-ALGLKMALSDKARNGAL-IVIDSIDGASKTKALAAQVSKLGW-KRALII 152
Query: 238 DNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKL 288
D + E N + I+ +++P G N ++LK DTLVIT ++ +E +L
Sbjct: 153 DGAEVNE-NFAKAARNIEGLDVLPTIGANVYDILKRDTLVITKAGVEALEARL 204
>gi|414162148|ref|ZP_11418395.1| 50S ribosomal protein L4 [Afipia felis ATCC 53690]
gi|410879928|gb|EKS27768.1| 50S ribosomal protein L4 [Afipia felis ATCC 53690]
Length = 206
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 89/238 (37%), Gaps = 45/238 (18%)
Query: 60 NLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKP 119
N+ T E K G V+L +IFGL PR D+I + WQ + TK EV RTG+K
Sbjct: 4 NVTTLEGKAAGSVSLSDEIFGLEPRKDIIQRVVNWQLAKRQAGTHKTKGRAEVWRTGKKM 63
Query: 120 WPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLC 179
+ QKG G R + G G +
Sbjct: 64 YKQKGTGGARHGSARVPQFRGGGRAFGPVVRSHAHD------------------------ 99
Query: 180 RILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWG-------P 232
LP V +GL LS K KD L V D L++ + G
Sbjct: 100 --LPKKVR-ALGLRHALSAK--------AKDGSLVVLDNAELKDAKTKALIGHFSGLGLT 148
Query: 233 SVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKL 288
S L VD + + + I H +++P G N ++L+ LV+T A+ +E +
Sbjct: 149 SALIVDGAE-VSNGFAQAARNIPHIDVLPIQGINVYDILRRQKLVLTKAAVDALEARF 205
>gi|319783321|ref|YP_004142797.1| 50S ribosomal protein L4 [Mesorhizobium ciceri biovar biserrulae
WSM1271]
gi|317169209|gb|ADV12747.1| ribosomal protein L4/L1e [Mesorhizobium ciceri biovar biserrulae
WSM1271]
Length = 206
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 89/229 (38%), Gaps = 31/229 (13%)
Query: 61 LDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPW 120
+ T K G V L +IFGL PR D++ + WQ K TK E+ RTG K +
Sbjct: 5 ITTLGGKDAGKVELSDEIFGLDPREDILQRVVRWQLAKKQQGTHKTKGRAEIARTGAKMY 64
Query: 121 PQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCR 180
QKG R + G G+ E E
Sbjct: 65 KQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHE------------------------- 99
Query: 181 ILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDNT 240
LP V +GL LS K + I+ +L L K L + G + +
Sbjct: 100 -LPKKVR-ALGLKHALSAKAKSASIIIIDELKLTEAKTKAL--IANFATLGLTNALLIGG 155
Query: 241 DYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDK 287
+++N + I + +++P G N ++L+ TLV++ A++ +E++
Sbjct: 156 AELDKNFKLAATNIPNIDVLPIQGINVYDILRRGTLVLSKAAVEALEER 204
>gi|405952868|gb|EKC20627.1| hypothetical protein CGI_10005714 [Crassostrea gigas]
Length = 89
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 27/38 (71%)
Query: 48 NAFLQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRL 85
N + QPRQAW+E L T E+ G ++LHPDIF + PRL
Sbjct: 47 NKYRQPRQAWLETLSTVEDHKLGMLDLHPDIFAVHPRL 84
>gi|433775497|ref|YP_007305964.1| 50S ribosomal protein L4, bacterial/organelle [Mesorhizobium
australicum WSM2073]
gi|433667512|gb|AGB46588.1| 50S ribosomal protein L4, bacterial/organelle [Mesorhizobium
australicum WSM2073]
Length = 206
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 87/229 (37%), Gaps = 31/229 (13%)
Query: 61 LDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPW 120
+ T K G V L IFGL PR D++ + WQ K K E+ RTG K +
Sbjct: 5 ITTLGGKDAGKVELSDGIFGLDPREDILQRVVRWQLAKKQQGTHKAKGRAEIARTGAKMY 64
Query: 121 PQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCR 180
QKG R + G G+ E E
Sbjct: 65 KQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHE------------------------- 99
Query: 181 ILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDNT 240
LP V +GL LS K + I+ +L L K L + G + V
Sbjct: 100 -LPKKVR-ALGLKHALSAKAKSASIIIIDELKLTEAKTKAL--IANFATLGLTNALVIGG 155
Query: 241 DYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDK 287
+++N + I + +++P G N ++L+ TLV++ A++ +E++
Sbjct: 156 AELDKNFKLAATNIPNIDVLPIQGINVYDILRRGTLVLSKAAVEALEER 204
>gi|77555479|gb|ABA98275.1| ribosomal protein L4/L1 family protein [Oryza sativa Japonica
Group]
Length = 288
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 61/107 (57%), Gaps = 3/107 (2%)
Query: 190 VGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDNTDYMERNISI 249
+GL LS + + L + +DL +P K + + + + VL VD D +++ + +
Sbjct: 183 LGLKIALSARTAEGKLLVFEDLEVPSHKTKNVVSYISQMEDTKKVLLVDGGD-IDKKLKL 241
Query: 250 VTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLLLALNR 294
T + + N++P+ G N ++L+HDTLV+T DA+ +I +++ +NR
Sbjct: 242 ATQNLHYVNVLPSIGLNVYSILQHDTLVMTRDAVNRIVERMHTPINR 288
>gi|222617092|gb|EEE53224.1| hypothetical protein OsJ_36122 [Oryza sativa Japonica Group]
Length = 227
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 61/107 (57%), Gaps = 3/107 (2%)
Query: 190 VGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDNTDYMERNISI 249
+GL LS + + L + +DL +P K + + + + VL VD D +++ + +
Sbjct: 122 LGLKIALSARTAEGKLLVFEDLEVPSHKTKNVVSYISQMEDTKKVLLVDGGD-IDKKLKL 180
Query: 250 VTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLLLALNR 294
T + + N++P+ G N ++L+HDTLV+T DA+ +I +++ +NR
Sbjct: 181 ATQNLHYVNVLPSIGLNVYSILQHDTLVMTRDAVNRIVERMHTPINR 227
>gi|393771117|ref|ZP_10359592.1| 50S ribosomal protein L4 [Novosphingobium sp. Rr 2-17]
gi|392723481|gb|EIZ80871.1| 50S ribosomal protein L4 [Novosphingobium sp. Rr 2-17]
Length = 211
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 99/233 (42%), Gaps = 32/233 (13%)
Query: 58 VENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGR 117
V NLD + + L D+FG+ PR D++ + WQ + + T+ ++V RTG+
Sbjct: 5 VLNLDGSNAN--ADIELSDDVFGIEPRADILHRVVTWQLENRRGIARATRERSDVARTGK 62
Query: 118 KPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCG 177
K QKG G R ++ G G+ E + + + G
Sbjct: 63 KFGKQKGGGTARHGDRAAPVFIGGGKA-------------HGARRREFDVSLNKKIRALG 109
Query: 178 LCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDP-KYLENLVEERCWGPSVLF 236
L L V G +KL+ D L VD K L + + +G +L
Sbjct: 110 LKMALSSKAQGVAG------VKLVVID-------SLDVDGKTKALVGQLAKANFGKKILV 156
Query: 237 VDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDK 287
+D + + N + I N++PA G N ++LKHDTLV+T A++++E +
Sbjct: 157 IDG-EAVNDNFARAARNIVGVNVLPAIGANVYDILKHDTLVLTRAAVEKLEAR 208
>gi|336430425|ref|ZP_08610372.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 3_1_57FAA_CT1]
gi|336018234|gb|EGN47986.1| 50S ribosomal protein L4 [Lachnospiraceae bacterium 3_1_57FAA_CT1]
Length = 206
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 93/222 (41%), Gaps = 28/222 (12%)
Query: 65 EEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKG 124
E K G ++L +FG+ ++ M + WQ K K +EV GRKPW QKG
Sbjct: 10 EGKEVGTLDLSDAVFGVEVNEHLVHMAVVWQLANKRQGTQKAKTRSEVSGGGRKPWRQKG 69
Query: 125 LIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRILPV 184
G R +TG G + + ++E+ + +T+ + L V
Sbjct: 70 TGHARQGSTRSPQWTGGGVVFAPVPRDYSFKLNKKEKRAALKSALTSRVQENKLI----V 125
Query: 185 MVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDNTDYME 244
+ + T + K + D+L + K LV+ ++ K N+V P+V NT
Sbjct: 126 VDELKFDEIKTKNFKQVMDNLKVSKGLVVINENDK---NVVMSAKNMPTV----NT---- 174
Query: 245 RNISIVTDQIKHYNIMPAYGENNMLKHDTLVITVDALKQIED 286
+T + Y++M A T+V+T DA+K IE+
Sbjct: 175 ----TLTSTLNVYDVMKA---------GTVVLTKDAVKTIEE 203
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,191,754,082
Number of Sequences: 23463169
Number of extensions: 247424483
Number of successful extensions: 8542908
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 23293
Number of HSP's successfully gapped in prelim test: 3162
Number of HSP's that attempted gapping in prelim test: 7158275
Number of HSP's gapped (non-prelim): 809256
length of query: 309
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 167
effective length of database: 9,027,425,369
effective search space: 1507580036623
effective search space used: 1507580036623
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 76 (33.9 bits)