BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5944
(309 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9DCU6|RM04_MOUSE 39S ribosomal protein L4, mitochondrial OS=Mus musculus GN=Mrpl4
PE=2 SV=1
Length = 294
Score = 162 bits (410), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 126/241 (52%), Gaps = 29/241 (12%)
Query: 52 QPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNE 111
+P QAWVE+L E++ G LHPD+F PRLD++ WQ+ ++ + + +TK E
Sbjct: 60 RPVQAWVESLRGFEQERIGLAELHPDVFATAPRLDIVHQVAIWQRNFRRISYANTKTRAE 119
Query: 112 VERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITA 171
V GRKPW QKG G R L+ G G
Sbjct: 120 VSGGGRKPWQQKGSGRARHGSIRSPLWRGGGVAHGPR----------------------- 156
Query: 172 TLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWG 231
P +LP+ V +GL L++KLMQDDLHIV L LP DP+YL L + R WG
Sbjct: 157 --GPTSYYYMLPMKVR-ALGLKVALTVKLMQDDLHIVDSLELPTADPQYLTELAQYRHWG 213
Query: 232 PSVLFVDNT-DYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKL 288
SVL VD T + M +N+ T + +N++PA G N +MLKH TLV+T+ ++ +EDKL
Sbjct: 214 SSVLLVDLTHEEMPKNVVAATSGLNSFNLIPAVGLNVYSMLKHQTLVLTLPSVAFLEDKL 273
Query: 289 L 289
L
Sbjct: 274 L 274
>sp|Q9BYD3|RM04_HUMAN 39S ribosomal protein L4, mitochondrial OS=Homo sapiens GN=MRPL4
PE=1 SV=1
Length = 311
Score = 161 bits (408), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 94/241 (39%), Positives = 126/241 (52%), Gaps = 29/241 (12%)
Query: 52 QPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNE 111
+P QAWVE+L E++ G +LHPD+F PRLD++ WQK +K + + TK E
Sbjct: 60 RPVQAWVESLRGFEQERVGLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAE 119
Query: 112 VERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITA 171
V GRKPWPQKG G R L+ G G
Sbjct: 120 VRGGGRKPWPQKGTGRARHGSIRSPLWRGGGVAHGPR----------------------- 156
Query: 172 TLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWG 231
P +LP+ V +GL L++KL QDDLHI+ L LP DP+YL L R WG
Sbjct: 157 --GPTSYYYMLPMKVR-ALGLKVALTVKLAQDDLHIMDSLELPTGDPQYLTELAHYRRWG 213
Query: 232 PSVLFVDNT-DYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKL 288
SVL VD T + M ++I T ++K +N++PA G N +MLKH TLV+T+ + +EDKL
Sbjct: 214 DSVLLVDLTHEEMPQSIVEATSRLKTFNLIPAVGLNVHSMLKHQTLVLTLPTVAFLEDKL 273
Query: 289 L 289
L
Sbjct: 274 L 274
>sp|Q32PI6|RM04_BOVIN 39S ribosomal protein L4, mitochondrial OS=Bos taurus GN=MRPL4 PE=1
SV=1
Length = 294
Score = 154 bits (390), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 93/241 (38%), Positives = 123/241 (51%), Gaps = 29/241 (12%)
Query: 52 QPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNE 111
+P QAWVE+L E++ G LHPD+F PRLD++ WQK +K + + TK E
Sbjct: 60 RPVQAWVESLRGYEQERVGLTELHPDVFSTAPRLDILHQVAIWQKNFKRISYAKTKTRAE 119
Query: 112 VERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITA 171
V GRKPW QKG G R ++ G G
Sbjct: 120 VRGGGRKPWQQKGSGRARHGSIRSPIWRGGGVAHGPR----------------------- 156
Query: 172 TLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWG 231
P +LP+ V V GL L++KL QDDLHIV L LP DP+YL L R WG
Sbjct: 157 --GPTSYYYMLPMKVR-VQGLKVALTVKLAQDDLHIVDSLELPTTDPQYLMELARYRRWG 213
Query: 232 PSVLFVD-NTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKL 288
SVLFVD + M +N+ T +K +N++PA G N +MLKH TLV+T+ + +E+KL
Sbjct: 214 DSVLFVDLEHEDMPQNVVAATSGLKTFNLIPAIGLNVHSMLKHQTLVLTLPTVAFLEEKL 273
Query: 289 L 289
L
Sbjct: 274 L 274
>sp|Q503X2|RM04_DANRE 39S ribosomal protein L4, mitochondrial OS=Danio rerio GN=mrpl4
PE=2 SV=1
Length = 302
Score = 147 bits (370), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/243 (37%), Positives = 127/243 (52%), Gaps = 28/243 (11%)
Query: 49 AFLQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKV 108
A L P Q W+E+L + + G V+LHPD+F + RLD++ WQ+ +K + + + K
Sbjct: 66 AHLTPAQTWLESLGSRDSDQLGVVDLHPDVFSVPIRLDILHAVEVWQRNFKRISYANVKT 125
Query: 109 TNEVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEE 168
EV GRKPW QK G R L+ G G
Sbjct: 126 RAEVRGGGRKPWQQKRTGRARHGSIRSPLWRGGGI------------------------- 160
Query: 169 ITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEER 228
I P +LP+ V V GL LS KL QD LHIV L +P DP+YL++LV+ R
Sbjct: 161 IHGPRGPTSYYYMLPMKVR-VQGLKIALSAKLAQDYLHIVDSLEIPTPDPQYLQDLVKHR 219
Query: 229 CWGPSVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIED 286
WG SVL VD + +NI T+ +K NI+PA G N ++LKH++LV+T++A+K +E
Sbjct: 220 QWGDSVLIVDVGEEFPQNILKATEDLKTVNIIPALGLNVHSLLKHESLVLTLEAVKFLEK 279
Query: 287 KLL 289
KLL
Sbjct: 280 KLL 282
>sp|Q2N9B2|RL4_ERYLH 50S ribosomal protein L4 OS=Erythrobacter litoralis (strain
HTCC2594) GN=rplD PE=3 SV=1
Length = 207
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 96/226 (42%), Gaps = 31/226 (13%)
Query: 65 EEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKG 124
+ K G V L +FG+ PR D++ + WQ + + T+ ++V RTG K QKG
Sbjct: 9 DGKAAGDVELDDAVFGVEPRADILHRVVTWQLENRRGTARPTRERSDVARTGAKFGRQKG 68
Query: 125 LIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRILPV 184
G R ++ G G+ + + NP +I
Sbjct: 69 SGNARHGDRGAPIFIGGGKAHGARKRD---------------------FNPSLNKKIR-- 105
Query: 185 MVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDNTDYME 244
+GL LS K +D L +V L L K L+ ++ W VL +D E
Sbjct: 106 ----ALGLKMALSSK-AKDGLVVVDSLDLKDAKTKVLKGHFDKAGWNGKVLVIDGESVNE 160
Query: 245 RNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKL 288
S + N++PA G N ++LKHDTLV+T DA++++E +
Sbjct: 161 -GFSKAAGNLPGVNVLPAMGANVYDILKHDTLVLTKDAVEKLEARF 205
>sp|Q1MIE0|RL4_RHIL3 50S ribosomal protein L4 OS=Rhizobium leguminosarum bv. viciae
(strain 3841) GN=rplD PE=3 SV=1
Length = 206
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 95/231 (41%), Gaps = 31/231 (13%)
Query: 60 NLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKP 119
N+ T E K G V+L IFGL PR D++ I WQ K K EV RTG K
Sbjct: 4 NVKTLEGKDAGKVSLSDAIFGLEPREDILARVIRWQLAKKQQGTHKAKGRAEVSRTGAKM 63
Query: 120 WPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLC 179
+ QKG R + G G+ E +
Sbjct: 64 YKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHD------------------------ 99
Query: 180 RILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDN 239
LP V +GL LS K+ DD+ ++ +LV K L ++ E + LF+
Sbjct: 100 --LPKKVR-ALGLRHALSAKIKADDVIVIDNLVAAEAKTKSLASVFETLGL-TNALFIGG 155
Query: 240 TDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKL 288
+ ++ N + I + +++P G N ++++ LV++ A++ +E++
Sbjct: 156 AE-LDGNFKLAAQNIPNIDVLPIQGINVYDIVRRGKLVLSKAAVEALEERF 205
>sp|Q2K9L5|RL4_RHIEC 50S ribosomal protein L4 OS=Rhizobium etli (strain CFN 42 / ATCC
51251) GN=rplD PE=3 SV=1
Length = 206
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 95/231 (41%), Gaps = 31/231 (13%)
Query: 60 NLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKP 119
N+ T E K G V+L +IFGL PR D++ I WQ K K EV RTG K
Sbjct: 4 NVKTLEGKDAGKVSLSDEIFGLEPREDILARVIRWQLAKKQQGTHKAKGRAEVSRTGAKM 63
Query: 120 WPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLC 179
+ QKG R + G G+ E +
Sbjct: 64 YKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHD------------------------ 99
Query: 180 RILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDN 239
LP V +GL LS K+ DD+ ++ +LV K L + E + LF+
Sbjct: 100 --LPKKVR-ALGLRHALSAKIKADDVIVIDNLVAAEAKTKALASAFETLGL-TNALFIGG 155
Query: 240 TDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKL 288
+ ++ N + I + +++P G N ++++ LV++ A++ +E++
Sbjct: 156 AE-LDGNFKLAAQNIPNIDVLPIQGINVYDIVRRGKLVLSKAAVEALEERF 205
>sp|B5ZYT6|RL4_RHILW 50S ribosomal protein L4 OS=Rhizobium leguminosarum bv. trifolii
(strain WSM2304) GN=rplD PE=3 SV=1
Length = 206
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 95/231 (41%), Gaps = 31/231 (13%)
Query: 60 NLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKP 119
N+ T E K G V+L IFGL PR D++ I WQ K K EV RTG K
Sbjct: 4 NVKTLEGKDAGKVSLSDAIFGLEPREDILARVIRWQLAKKQQGTHKAKGRAEVSRTGAKM 63
Query: 120 WPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLC 179
+ QKG R + G G+ E +
Sbjct: 64 YKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHD------------------------ 99
Query: 180 RILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDN 239
LP V +GL LS K+ DD+ ++ +LV K L ++ E + LF+
Sbjct: 100 --LPKKVR-ALGLRLALSAKIKADDVIVIDNLVAAEAKTKALASVFETLGL-TNALFIGG 155
Query: 240 TDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKL 288
+ ++ N + I + +++P G N ++++ LV++ A++ +E++
Sbjct: 156 AE-LDGNFKLAAQNIPNIDVLPIQGINVYDIVRRGKLVLSKAAVEALEERF 205
>sp|B3PWS2|RL4_RHIE6 50S ribosomal protein L4 OS=Rhizobium etli (strain CIAT 652)
GN=rplD PE=3 SV=1
Length = 206
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 94/231 (40%), Gaps = 31/231 (13%)
Query: 60 NLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKP 119
N+ T E K G V+L IFGL PR D++ I WQ K K EV RTG K
Sbjct: 4 NVKTLEGKDAGKVSLSDAIFGLEPREDILARVIRWQLAKKQQGTHKAKGRAEVSRTGAKM 63
Query: 120 WPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLC 179
+ QKG R + G G+ E +
Sbjct: 64 YKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHD------------------------ 99
Query: 180 RILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDN 239
LP V +GL LS K+ DD+ ++ +LV K L + E + LF+
Sbjct: 100 --LPKKVR-ALGLRHALSAKIKADDVIVIDNLVATEAKTKALASAFETLGL-TNALFIGG 155
Query: 240 TDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKL 288
+ ++ N + I + +++P G N ++++ LV++ A++ +E++
Sbjct: 156 AE-LDGNFKLAAQNIPNIDVLPIQGINVYDIVRRGKLVLSKAAVEALEERF 205
>sp|Q28UW1|RL4_JANSC 50S ribosomal protein L4 OS=Jannaschia sp. (strain CCS1) GN=rplD
PE=3 SV=1
Length = 206
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 91/226 (40%), Gaps = 31/226 (13%)
Query: 65 EEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKG 124
+ K G V+L +FGL PR D++ + WQ+ K EV + +K + QKG
Sbjct: 9 DGKKAGSVDLDEALFGLEPRADILHRVVRWQRNNAQAGTHKVKTRREVSYSTKKIYRQKG 68
Query: 125 LIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRILPV 184
G R ++ G G K E ++ +
Sbjct: 69 TGGARHGARSAPIFRGGGVYKGPTPRSHGHELTKKFRK---------------------- 106
Query: 185 MVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDNTDYME 244
+GL LS K + L +++ + + L V+E W L +D +D ++
Sbjct: 107 -----LGLRHALSAKAAEGRLVVIESIAMDEAKTSALAKQVKEMGW-KRALIIDGSD-VD 159
Query: 245 RNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKL 288
N + I+ +++P G N ++LK DTLVIT ++ +E +L
Sbjct: 160 ANFAQAARNIEGLDVLPTMGANVYDILKRDTLVITKAGVEALEARL 205
>sp|Q8UE19|RL4_AGRT5 50S ribosomal protein L4 OS=Agrobacterium tumefaciens (strain C58 /
ATCC 33970) GN=rplD PE=3 SV=1
Length = 206
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 91/230 (39%), Gaps = 31/230 (13%)
Query: 60 NLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKP 119
N+ T E K G V+L +IFGL PR D++ + WQ K TK +EV RTG K
Sbjct: 4 NVKTLEGKDAGKVSLSDEIFGLDPRQDILARMVRWQLAKKQQGTHKTKNRSEVSRTGAKM 63
Query: 120 WPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLC 179
+ QKG R + G G+ +
Sbjct: 64 YKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHAHD------------------------ 99
Query: 180 RILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDN 239
LP V + L LS KL ++L IV LV K L L G + V
Sbjct: 100 --LPKKVR-ALALRHALSAKLKAEELIIVDQLVASEAKTKAL--LGSFASLGLTNALVIG 154
Query: 240 TDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDK 287
++ N + I + +++P G N ++L+ LV++ A++ +E++
Sbjct: 155 GAELDGNFKLAAQNIPNVDVLPVQGINVYDILRRGKLVLSKAAVEALEER 204
>sp|B9JVN8|RL4_AGRVS 50S ribosomal protein L4 OS=Agrobacterium vitis (strain S4 / ATCC
BAA-846) GN=rplD PE=3 SV=1
Length = 206
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 87/230 (37%), Gaps = 31/230 (13%)
Query: 60 NLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKP 119
N+ T E G V+L IFGL PR D+I + WQ K TK EV RTG K
Sbjct: 4 NVKTLEGTDAGTVSLSDAIFGLEPRQDIIARMVRWQLAKKQQGTHKTKTRAEVSRTGAKM 63
Query: 120 WPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLC 179
+ QKG R + G G+ E +
Sbjct: 64 YKQKGTGRARHHSARAPQFRGGGKAHGPVVRSHEHD------------------------ 99
Query: 180 RILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDN 239
LP V + L LS K D+L IV LV K + E G V
Sbjct: 100 --LPKKVR-ALALRHALSAKFKADELIIVDQLVAADAKTKAAVGVFE--ALGLKNALVIG 154
Query: 240 TDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDK 287
++ N + I + +++P G N ++L+ LV++ A++ +E++
Sbjct: 155 GVELDVNFKLAAANIPNIDVLPVQGINVYDILRRGKLVLSKAAVEALEER 204
>sp|B6JET4|RL4_OLICO 50S ribosomal protein L4 OS=Oligotropha carboxidovorans (strain
ATCC 49405 / DSM 1227 / OM5) GN=rplD PE=3 SV=1
Length = 206
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 88/238 (36%), Gaps = 45/238 (18%)
Query: 60 NLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKP 119
N+ T E K G VNL IFGL PR D+I + WQ + TK E+ RTG+K
Sbjct: 4 NVTTLEGKAAGSVNLSDTIFGLEPRTDIIQRVVNWQLAKRQAGTHKTKGRAEIARTGKKM 63
Query: 120 WPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLC 179
+ QKG G R + G G +
Sbjct: 64 YKQKGTGGARHGSARVPQFRGGGRAFGPVVRSHAYD------------------------ 99
Query: 180 RILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWG-------P 232
LP V +GL LS K KD L V D L++ + G
Sbjct: 100 --LPKKVR-ALGLRHALSAK--------AKDGSLVVLDNAELKDAKTKALIGHFSGLGLT 148
Query: 233 SVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKL 288
S L VD + + + I H +++P G N ++L+ LV+T A+ +E +
Sbjct: 149 SALIVDGAE-VNNGFAQAARNIPHIDVLPIQGINVYDILRRQKLVLTKAAVDALEARF 205
>sp|Q16AF3|RL4_ROSDO 50S ribosomal protein L4 OS=Roseobacter denitrificans (strain ATCC
33942 / OCh 114) GN=rplD PE=3 SV=1
Length = 205
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 83/221 (37%), Gaps = 32/221 (14%)
Query: 70 GFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERL 129
G V+L +FGL PR D++ + WQ+ K +EV + +K + QKG
Sbjct: 14 GSVDLDEALFGLEPRADILHRVVRWQRNNAQAGTHKVKTRSEVNYSTKKIYRQKGTGGAR 73
Query: 130 DGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRILPVMVHIV 189
G R ++ G G K + E+T GLC
Sbjct: 74 HGARSAPIFRGGGVYK-------------GPKVRSHGHELTKKFRKLGLCH--------- 111
Query: 190 VGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDNTDYMERNISI 249
LS K+ +L I+ D V L V W L +D E +
Sbjct: 112 -----ALSAKMKAGELVII-DEVSSDGKTAALAKQVANLGW-KRALIIDGATVNE-TFAQ 163
Query: 250 VTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKL 288
I +I+P G N ++LK DTLVIT ++ +E +L
Sbjct: 164 AARNIDGLDILPTMGANVYDILKRDTLVITKAGVEALEARL 204
>sp|Q211E9|RL4_RHOPB 50S ribosomal protein L4 OS=Rhodopseudomonas palustris (strain
BisB18) GN=rplD PE=3 SV=1
Length = 206
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 84/228 (36%), Gaps = 31/228 (13%)
Query: 63 TTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQ 122
T E K G V L +IFGL PR+D+I + WQ + K EV RTG+K + Q
Sbjct: 7 TLEGKEAGSVQLSDEIFGLDPRVDIIQRCVNWQLAKRQAGTHKAKGRAEVWRTGKKMYKQ 66
Query: 123 KGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRIL 182
KG G +R + G G + L
Sbjct: 67 KGTGGARHGSQRVPQFRGGGRAFGPVVRSHAFD--------------------------L 100
Query: 183 PVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDNTDY 242
P V + L LS K L +++ L K L S L +D +
Sbjct: 101 PKKVR-ALALKHALSAKAKDGGLIVIESATLEAAKTKALVGHFSGLGL-TSALIIDGAE- 157
Query: 243 MERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKL 288
+ ++ I + +++P G N ++L+ LV+T A+ +E +
Sbjct: 158 LNNGFAVAARNIPNIDVLPIQGINVYDILRRQKLVLTKAAVDALEARF 205
>sp|Q3SSW5|RL4_NITWN 50S ribosomal protein L4 OS=Nitrobacter winogradskyi (strain Nb-255
/ ATCC 25391) GN=rplD PE=3 SV=1
Length = 206
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 39/85 (45%)
Query: 60 NLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKP 119
N+ T E K G V+L IFGL PR D+I + WQ TK E+ RTG+K
Sbjct: 4 NVTTLEGKAAGSVHLSDGIFGLEPRKDLIQRCVNWQLAKSQAGTHKTKGRAEIWRTGKKL 63
Query: 120 WPQKGLIERLDGKRRPRLYTGKGEE 144
+ QKG G R + G G
Sbjct: 64 FKQKGTGNARHGSARAPQFRGGGRA 88
>sp|A5ELM6|RL4_BRASB 50S ribosomal protein L4 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC
BAA-1182) GN=rplD PE=3 SV=1
Length = 206
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 84/227 (37%), Gaps = 31/227 (13%)
Query: 63 TTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQ 122
T E K G V L IFGL PR+D+I ++WQ + K E+ RTG+K + Q
Sbjct: 7 TLEGKDAGSVQLSDAIFGLEPRVDIIQRCVQWQLNKRQAGTHKAKGRAEIWRTGKKMYKQ 66
Query: 123 KGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRIL 182
KG G R + G G + L
Sbjct: 67 KGTGGARHGSARVPQFRGGGRAFGPVVRSHATD--------------------------L 100
Query: 183 PVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDNTDY 242
P V + L LS K DL ++++ L K L + L +D +
Sbjct: 101 PKKVR-ALALKHALSAKAKDGDLVVLENATLEAAKTKALIGHFSGLGL-TNALIIDGAE- 157
Query: 243 MERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDK 287
+ + I + +++P G N ++L+ LV+T A+ +E +
Sbjct: 158 LHNGFAAAARNIPNLDVLPIQGINVYDILRRQKLVLTKAAIDALEAR 204
>sp|Q89J85|RL4_BRAJA 50S ribosomal protein L4 OS=Bradyrhizobium japonicum (strain USDA
110) GN=rplD PE=3 SV=2
Length = 206
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 83/228 (36%), Gaps = 33/228 (14%)
Query: 63 TTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQ 122
T E K G V L IFGL PR D+I ++WQ + K E+ RTG+K + Q
Sbjct: 7 TLEGKEAGSVQLSDAIFGLEPRQDIIARCVQWQLNKRQAGTHKAKGRAEIWRTGKKMYKQ 66
Query: 123 KGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRIL 182
KG G R + G G + L
Sbjct: 67 KGTGGARHGSARVPQFRGGGRAFGPVVRSHATD--------------------------L 100
Query: 183 PVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWG-PSVLFVDNTD 241
P V + L LS K DL ++ L K L L G + L +D +
Sbjct: 101 PKKVR-ALALKHALSAKAKDGDLLVIDKAALEAAKTKAL--LGHFSGLGLTNALIIDGAE 157
Query: 242 YMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDK 287
+ + I + +++P G N ++L+ LV+T A+ +E +
Sbjct: 158 -LNNGFAAAARNIPNMDVLPIQGINVYDILRRQKLVLTKAAIDALEAR 204
>sp|A4YSJ3|RL4_BRASO 50S ribosomal protein L4 OS=Bradyrhizobium sp. (strain ORS278)
GN=rplD PE=3 SV=1
Length = 206
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 83/227 (36%), Gaps = 31/227 (13%)
Query: 63 TTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQ 122
T E K G V L IFGL PR D+I ++WQ + K E+ RTG+K + Q
Sbjct: 7 TLEGKEAGSVQLSDAIFGLEPRADIIQRCVQWQLNKRQAGTHKAKGRAEIWRTGKKMYKQ 66
Query: 123 KGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRIL 182
KG G R + G G + L
Sbjct: 67 KGTGGARHGSARVPQFRGGGRAFGPVVRSHATD--------------------------L 100
Query: 183 PVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDNTDY 242
P V + L LS K DL ++++ L K L + L +D +
Sbjct: 101 PKKVR-ALALKHALSAKAKDGDLVVLENATLEAAKTKALIGHFSGLGL-TNALIIDGAE- 157
Query: 243 MERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDK 287
+ + I + +++P G N ++L+ LV+T A+ +E +
Sbjct: 158 LHNGFAAAARNIPNLDVLPIQGINVYDILRRQKLVLTKAAIDALEAR 204
>sp|Q1QN29|RL4_NITHX 50S ribosomal protein L4 OS=Nitrobacter hamburgensis (strain X14 /
DSM 10229) GN=rplD PE=3 SV=1
Length = 206
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 38/85 (44%)
Query: 60 NLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKP 119
N+ T E G V L IFGL PR D+I + WQ + TK E+ RTG+K
Sbjct: 4 NVTTLEGNAAGSVQLSDGIFGLEPRKDLIQRCVNWQLAKRQAGTHKTKGRAEIWRTGKKM 63
Query: 120 WPQKGLIERLDGKRRPRLYTGKGEE 144
+ QKG G R + G G
Sbjct: 64 FKQKGTGNARHGSARVPQFRGGGRA 88
>sp|B3QBX9|RL4_RHOPT 50S ribosomal protein L4 OS=Rhodopseudomonas palustris (strain
TIE-1) GN=rplD PE=3 SV=1
Length = 206
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 39/83 (46%)
Query: 60 NLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKP 119
+ T E K G V L +IFGL PR D+I + WQ + K EV RTG+K
Sbjct: 4 KVTTLEGKEAGSVQLSDEIFGLEPRSDIIQRCVIWQLAKRQAGTHKAKGRAEVWRTGKKM 63
Query: 120 WPQKGLIERLDGKRRPRLYTGKG 142
+ QKG G +R + G G
Sbjct: 64 YKQKGTGGARHGSQRVPQFRGGG 86
>sp|P61068|RL4_RHOPA 50S ribosomal protein L4 OS=Rhodopseudomonas palustris (strain ATCC
BAA-98 / CGA009) GN=rplD PE=1 SV=1
Length = 206
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 39/83 (46%)
Query: 60 NLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKP 119
+ T E K G V L +IFGL PR D+I + WQ + K EV RTG+K
Sbjct: 4 KVTTLEGKEAGSVQLSDEIFGLEPRSDIIQRCVIWQLAKRQAGTHKAKGRAEVWRTGKKM 63
Query: 120 WPQKGLIERLDGKRRPRLYTGKG 142
+ QKG G +R + G G
Sbjct: 64 YKQKGTGGARHGSQRVPQFRGGG 86
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 125,327,292
Number of Sequences: 539616
Number of extensions: 6169366
Number of successful extensions: 249469
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2443
Number of HSP's successfully gapped in prelim test: 515
Number of HSP's that attempted gapping in prelim test: 145085
Number of HSP's gapped (non-prelim): 52949
length of query: 309
length of database: 191,569,459
effective HSP length: 117
effective length of query: 192
effective length of database: 128,434,387
effective search space: 24659402304
effective search space used: 24659402304
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)