Query psy5944
Match_columns 309
No_of_seqs 189 out of 1224
Neff 4.1
Searched_HMMs 46136
Date Fri Aug 16 22:27:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5944.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5944hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 CHL00147 rpl4 ribosomal protei 100.0 6.7E-65 1.5E-69 462.0 18.5 200 58-289 8-214 (215)
2 PRK05319 rplD 50S ribosomal pr 100.0 1.2E-63 2.7E-68 450.0 19.3 201 58-288 2-204 (205)
3 KOG1624|consensus 100.0 8.2E-64 1.8E-68 467.1 18.1 228 52-305 49-283 (290)
4 PF00573 Ribosomal_L4: Ribosom 100.0 1.4E-63 3E-68 445.2 13.7 188 72-287 1-192 (192)
5 PRK14907 rplD 50S ribosomal pr 100.0 1.9E-62 4.1E-67 462.9 17.5 187 71-288 103-294 (295)
6 PRK14547 rplD 50S ribosomal pr 100.0 6E-62 1.3E-66 460.7 18.3 206 58-292 3-214 (298)
7 COG0088 RplD Ribosomal protein 100.0 6.7E-55 1.4E-59 396.5 14.5 206 57-290 2-212 (214)
8 PRK04042 rpl4lp 50S ribosomal 100.0 4.4E-54 9.5E-59 399.6 17.0 194 59-288 3-253 (254)
9 TIGR03672 rpl4p_arch 50S ribos 100.0 3.9E-53 8.4E-58 392.7 17.0 193 59-287 3-251 (251)
10 PLN00185 60S ribosomal protein 100.0 8E-48 1.7E-52 375.4 19.2 217 57-308 7-286 (405)
11 PTZ00428 60S ribosomal protein 100.0 5.3E-44 1.2E-48 346.9 18.5 213 57-308 5-280 (381)
12 KOG1475|consensus 99.9 1.3E-23 2.7E-28 199.6 10.9 215 58-308 6-280 (363)
13 PTZ00428 60S ribosomal protein 94.7 0.019 4.2E-07 57.4 2.5 45 88-132 41-90 (381)
14 TIGR00927 2A1904 K+-dependent 84.3 0.17 3.7E-06 56.1 -1.9 6 140-145 860-865 (1096)
15 PTZ00415 transmission-blocking 83.5 0.17 3.7E-06 58.9 -2.4 9 271-279 313-321 (2849)
16 PF03066 Nucleoplasmin: Nucleo 70.7 1.4 3E-05 38.8 0.0 8 55-62 63-70 (149)
17 KOG1834|consensus 65.6 1.7 3.6E-05 47.0 -0.6 12 46-57 796-807 (952)
18 KOG1832|consensus 64.6 1.3 2.8E-05 49.5 -1.7 11 132-142 1389-1399(1516)
19 PHA02324 hypothetical protein 63.5 5.2 0.00011 29.1 1.8 29 96-124 17-46 (47)
20 PF01056 Myc_N: Myc amino-term 56.3 3.7 8E-05 40.7 0.0 15 155-169 230-244 (329)
21 PHA03171 UL37 tegument protein 56.2 3.9 8.5E-05 42.0 0.2 17 157-173 97-113 (499)
22 PF03266 NTPase_1: NTPase; In 54.0 22 0.00049 31.2 4.5 69 201-270 94-164 (168)
23 PTZ00415 transmission-blocking 49.7 2.6 5.7E-05 49.8 -2.4 6 303-308 363-368 (2849)
24 PF06524 NOA36: NOA36 protein; 47.4 2.5 5.4E-05 41.2 -2.6 19 107-125 220-240 (314)
25 PF06524 NOA36: NOA36 protein; 46.7 3 6.6E-05 40.7 -2.2 7 97-103 233-239 (314)
26 PRK06895 putative anthranilate 42.4 43 0.00093 29.5 4.5 45 233-277 3-50 (190)
27 PF14812 PBP1_TM: Transmembran 39.5 5.5 0.00012 32.3 -1.4 13 183-195 61-73 (81)
28 PF04712 Radial_spoke: Radial 34.8 10 0.00022 39.4 -0.8 12 203-214 415-426 (491)
29 PRK08007 para-aminobenzoate sy 32.7 76 0.0017 28.1 4.6 12 218-229 12-23 (187)
30 PF15470 DUF4637: Domain of un 31.6 14 0.00029 33.4 -0.4 13 133-145 6-18 (173)
31 COG0512 PabA Anthranilate/para 31.4 74 0.0016 29.6 4.3 46 233-278 3-53 (191)
32 PF01056 Myc_N: Myc amino-term 31.2 16 0.00035 36.3 0.0 20 151-170 229-248 (329)
33 PF11081 DUF2890: Protein of u 30.6 13 0.00028 34.4 -0.8 10 158-167 51-60 (187)
34 COG1011 Predicted hydrolase (H 30.4 1.1E+02 0.0023 26.5 5.1 50 203-255 142-192 (229)
35 PF04931 DNA_pol_phi: DNA poly 30.2 7.9 0.00017 41.8 -2.5 10 219-228 739-748 (784)
36 COG4098 comFA Superfamily II D 29.3 2.3E+02 0.005 29.3 7.6 113 178-296 277-406 (441)
37 PRK07914 hypothetical protein; 28.0 1.5E+02 0.0032 28.3 5.9 92 201-294 63-166 (320)
38 CHL00101 trpG anthranilate syn 27.8 1.1E+02 0.0023 27.2 4.6 21 234-254 2-22 (190)
39 PRK13695 putative NTPase; Prov 27.4 3.1E+02 0.0066 23.4 7.3 69 200-269 94-164 (174)
40 PHA03171 UL37 tegument protein 27.2 5.7 0.00012 40.8 -3.9 65 113-177 48-120 (499)
41 PF05432 BSP_II: Bone sialopro 26.7 23 0.00051 34.6 0.3 18 123-140 106-123 (292)
42 KOG4771|consensus 26.3 19 0.0004 33.5 -0.5 46 128-175 51-96 (210)
43 cd06435 CESA_NdvC_like NdvC_li 25.3 4.4E+02 0.0096 22.7 8.3 90 189-289 15-110 (236)
44 PF04931 DNA_pol_phi: DNA poly 25.1 10 0.00022 41.1 -2.8 7 190-196 706-712 (784)
45 PRK13566 anthranilate synthase 25.0 75 0.0016 34.7 3.7 49 229-277 524-576 (720)
46 PRK07649 para-aminobenzoate/an 24.7 1.3E+02 0.0027 27.1 4.5 23 205-230 2-24 (195)
47 PF10446 DUF2457: Protein of u 24.3 14 0.0003 38.3 -1.8 16 232-247 191-206 (458)
48 TIGR01815 TrpE-clade3 anthrani 24.2 1.4E+02 0.0031 32.6 5.5 49 229-277 514-566 (717)
49 COG0463 WcaA Glycosyltransfera 23.1 2.1E+02 0.0046 21.6 4.9 41 183-225 13-53 (291)
50 PRK05670 anthranilate synthase 22.7 1.5E+02 0.0032 26.1 4.5 44 234-277 2-50 (189)
51 KOG3062|consensus 22.4 90 0.002 30.5 3.3 41 171-212 43-83 (281)
52 KOG2773|consensus 22.4 18 0.00038 37.7 -1.5 10 278-287 329-338 (483)
53 PF03247 Prothymosin: Prothymo 22.0 30 0.00065 29.4 0.0 10 164-173 74-83 (106)
54 PF03247 Prothymosin: Prothymo 21.9 30 0.00065 29.4 0.0 18 156-173 69-86 (106)
55 PRK06774 para-aminobenzoate sy 21.7 1.6E+02 0.0034 25.9 4.5 22 205-229 2-23 (191)
56 cd03369 ABCC_NFT1 Domain 2 of 21.1 2.3E+02 0.005 24.7 5.4 56 181-239 125-182 (207)
57 KOG1834|consensus 20.7 18 0.0004 39.5 -1.8 13 138-150 887-899 (952)
58 PRK12766 50S ribosomal protein 20.6 48 0.001 31.7 1.0 12 123-134 42-53 (232)
59 PF06144 DNA_pol3_delta: DNA p 20.4 2.4E+02 0.0052 23.5 5.2 87 204-292 59-160 (172)
60 PLN03078 Putative tRNA pseudou 20.3 45 0.00099 35.2 0.9 11 95-105 227-237 (513)
No 1
>CHL00147 rpl4 ribosomal protein L4; Validated
Probab=100.00 E-value=6.7e-65 Score=461.99 Aligned_cols=200 Identities=22% Similarity=0.265 Sum_probs=189.2
Q ss_pred eeeccCCCCce-eeeEEcCCcccCCCCchhHHHHHHHHHHHhCCCCcCCCceeeeecccCCCCccCCCCcccccCCCCCc
Q psy5944 58 VENLDTTEEKH-FGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERLDGKRRPR 136 (309)
Q Consensus 58 v~~v~~~~g~~-~g~v~L~p~iF~~~~r~dlIh~~V~~q~a~~Rqgta~tKtraEV~GsGRKpwrQKGTGrAR~Gs~rsP 136 (309)
..++++++|+. .|+++|++++| ..++.|+||++|+||++++|||||+||+|+||+||||||||||||||||+||+|||
T Consensus 8 ~~~v~~~~g~~~~~~~~l~~~vf-~~~~~~ll~~~v~~~~a~~R~gt~~tKtR~eV~G~grKp~~QKGTGrAR~Gs~rsP 86 (215)
T CHL00147 8 NYPVIDLTGKEKSETIKLKLNVL-EKSGNYLLHRALVRQNNNQRQGTASTKTRSEVRGGGRKPWKQKGTGRARAGSNRSP 86 (215)
T ss_pred eEEEEccCCCeecceEEeCHHHh-CCchHhHHHHHHHHHHHHHhhcccccCccccccCCCCCCcccCCCCccCCCCCcCC
Confidence 36788899999 89999999999 55779999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCcccchhhhHHHHHHHHHHHHHHHHHHhhhcCCCccccccCCcccHHHHHHHHHHHhhhcCCCeEEEeccC--CC
Q psy5944 137 LYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLV--LP 214 (309)
Q Consensus 137 ~~rGGG~af~~~~~~~~~~~~~~~~~~~~~~~~~gP~~Pr~~~~klnkKvr~~lAl~saLS~K~~~~~L~VVd~l~--l~ 214 (309)
+|||||++| ||+ ||+|+++||+|+| ++||+||||.|. ++|+|||++. ++
T Consensus 87 ~~rgGG~af-------------------------gP~-pR~y~~klnKKvr-rlAl~sALS~k~--~~l~VVd~~~~~~~ 137 (215)
T CHL00147 87 LWKGGGVIF-------------------------GPK-PKTYSNKLNKKER-RLALRTLLYNKS--NNITVVENFESSIT 137 (215)
T ss_pred cccCCEeec-------------------------CCC-CcchhhhcCHHHH-HHHHHHHHHHhh--CCeEEEcccccccC
Confidence 999999999 999 8999999999999 999999999985 5899999999 99
Q ss_pred CCCHHHHHHHHHHcCCC--CceEEEecCCccchhHHHHHhCCCCceEecccchh--hhcCCCcEEEcHHHHHHHHHHHh
Q psy5944 215 VDDPKYLENLVEERCWG--PSVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLL 289 (309)
Q Consensus 215 ~~kTk~l~~ll~~~~~~--~svL~V~~~d~~~~nl~~s~rNI~~v~i~~~~~lN--dlLk~d~lViT~~Al~~Le~~l~ 289 (309)
.+|||.+.++|+.+++. +++|||++. .++|+.+|+||||+|++++++++| |||++++||||++||++|+++|.
T Consensus 138 ~~KTK~~~~~L~~l~~~~~~~~L~V~~~--~~~nl~~S~rNlp~V~v~~~~~lNv~dLL~~~~vvit~~Al~~lee~~~ 214 (215)
T CHL00147 138 NPKTKAFINLLKKLNINLDQKILIIVPE--KTENLYLSTRNLKNVELISADTLNIKSLLKAKQIIITKEALKIIEEVYN 214 (215)
T ss_pred CCCHHHHHHHHHHcCCCcCCceEEEECC--CchHHHHHHhCCCCcEEEecCCccHHHHhcCCcEEEEHHHHHHHHHHhc
Confidence 99999999999999873 579999854 368999999999999999999999 99999999999999999999974
No 2
>PRK05319 rplD 50S ribosomal protein L4; Provisional
Probab=100.00 E-value=1.2e-63 Score=449.96 Aligned_cols=201 Identities=27% Similarity=0.375 Sum_probs=194.2
Q ss_pred eeeccCCCCceeeeEEcCCcccCCCCchhHHHHHHHHHHHhCCCCcCCCceeeeecccCCCCccCCCCcccccCCCCCce
Q psy5944 58 VENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERLDGKRRPRL 137 (309)
Q Consensus 58 v~~v~~~~g~~~g~v~L~p~iF~~~~r~dlIh~~V~~q~a~~Rqgta~tKtraEV~GsGRKpwrQKGTGrAR~Gs~rsP~ 137 (309)
..++++++|+..|+++|+++||+.++|.|+||++|.||++++|||||+||+|+||+|||||||+||||||||+|++++|+
T Consensus 2 ~~~v~~~~g~~~~~i~l~~~vF~~~~r~dll~~~v~~~~~~~Rqgta~tk~r~ev~GsgrK~~~QKGTGrAR~Gs~rsP~ 81 (205)
T PRK05319 2 ELKVLNLDGKEAGEVELSDAVFGVEPNEALLHQVVVAQLANARQGTHATKTRSEVSGGGKKPWRQKGTGRARQGSIRSPQ 81 (205)
T ss_pred eeEEEcCCCCCcceEEcCHHHhCCCccHHHHHHHHHHHHHhcccCcccCCcccccCCCCCCCCCCCCCCccCcCcccCCc
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCcccchhhhHHHHHHHHHHHHHHHHHHhhhcCCCccccccCCcccHHHHHHHHHHHhhhcCCCeEEEeccCCCCCC
Q psy5944 138 YTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDD 217 (309)
Q Consensus 138 ~rGGG~af~~~~~~~~~~~~~~~~~~~~~~~~~gP~~Pr~~~~klnkKvr~~lAl~saLS~K~~~~~L~VVd~l~l~~~k 217 (309)
|||||++| ||+ ||+|+++||+|+| ++||++|||+|+.+++|+|||++.++.+|
T Consensus 82 ~rGGg~af-------------------------gpk-pr~~~~klnkK~~-~lAl~~aLs~k~~~~~l~Vvd~~~~~~~K 134 (205)
T PRK05319 82 WRGGGVVF-------------------------GPK-PRDYSQKLNKKVR-RLALRSALSEKAREGRLVVVDDLSLEAPK 134 (205)
T ss_pred ccCCeeeC-------------------------CCC-ccchhhhcCHHHH-HHHHHHHHHHHHhcCCeEEEeccccCCCC
Confidence 99999999 999 8999999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCceEEEecCCccchhHHHHHhCCCCceEecccchh--hhcCCCcEEEcHHHHHHHHHHH
Q psy5944 218 PKYLENLVEERCWGPSVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKL 288 (309)
Q Consensus 218 Tk~l~~ll~~~~~~~svL~V~~~d~~~~nl~~s~rNI~~v~i~~~~~lN--dlLk~d~lViT~~Al~~Le~~l 288 (309)
||.+.++|+.+++ +++|||++. .++|+.+|+||||+|++++++++| |||+++.||||++||+.|+++|
T Consensus 135 Tk~~~~~l~~lg~-~~~Lii~~~--~~~n~~~a~rNi~~v~v~~~~~ln~~dll~~~~vv~t~~Al~~l~~~~ 204 (205)
T PRK05319 135 TKELAAKLKNLGL-KKVLIVTDE--VDENLYLSARNLPNVDVLPAQGLNVYDLLRADKVVLTKAAVKKLEERL 204 (205)
T ss_pred HHHHHHHHHHcCC-CceEEEECC--CchHHHHHHhCCCCcEEEecCCccHHHhcCCCcEEEEHHHHHHHHHHh
Confidence 9999999999998 579999853 478999999999999999999999 9999999999999999999986
No 3
>KOG1624|consensus
Probab=100.00 E-value=8.2e-64 Score=467.13 Aligned_cols=228 Identities=42% Similarity=0.681 Sum_probs=218.4
Q ss_pred CCccceeeeccCCCCceeeeEEcCCcccCCCCchhHHHHHHHHHHHhCCCCcCCCceeeeecccCCCCccCCCCcccccC
Q psy5944 52 QPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERLDG 131 (309)
Q Consensus 52 ~p~~~~v~~v~~~~g~~~g~v~L~p~iF~~~~r~dlIh~~V~~q~a~~Rqgta~tKtraEV~GsGRKpwrQKGTGrAR~G 131 (309)
.|.|+||.++...+++++|++.||+++|..++|.||||++|+||.+|+|||||+||||+||+|||||||+||||||||+|
T Consensus 49 ~p~qa~v~~~~~~e~E~~gl~~l~~dvf~~~~RrDIlhrav~wq~~nrrvgtastktRaEv~ggGrKp~~QKgtGrAr~G 128 (290)
T KOG1624|consen 49 PPKQAWVEPLDFFELEKVGLVDLHPDVFAEPPRRDILHRAVVWQLDNRRVGTASTKTRAEVRGGGRKPWPQKGTGRARVG 128 (290)
T ss_pred ChhhheeeeccccccccceeeecChhhhccchHHHHHHHHHHHhhcccccccccCCccccccCCCCCcCcccCCCccccc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceecCCCcccchhhhHHHHHHHHHHHHHHHHHHhhhcCCCccccccCCcccHHHHHHHHHHHhhhcCCCeEEEecc
Q psy5944 132 KRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDL 211 (309)
Q Consensus 132 s~rsP~~rGGG~af~~~~~~~~~~~~~~~~~~~~~~~~~gP~~Pr~~~~klnkKvr~~lAl~saLS~K~~~~~L~VVd~l 211 (309)
+.|||+++|||++| ||++||||+++||.||| .+||++|||.|+.||+|||+|++
T Consensus 129 s~rsP~r~gGg~~~-------------------------gpr~P~d~~~~Lp~kvr-~lgl~~ALS~~~a~~~l~I~d~~ 182 (290)
T KOG1624|consen 129 SLRSPQRRGGGVAH-------------------------GPRGPRDYSYKLPSKVR-SLGLKIALSAKLAQDDLHIVDEL 182 (290)
T ss_pred CccCcccCCCcccc-------------------------CCCCCcchhhhccHHHH-HHHHHHHHHHHHhCCceEEeccc
Confidence 99999999999999 99999999999999999 99999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHcCCCCceEEEecCC-ccchhHHHHHhCCCCceEecccchh--hhcCCCcEEEcHHHHHHHHHHH
Q psy5944 212 VLPVDDPKYLENLVEERCWGPSVLFVDNTD-YMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKL 288 (309)
Q Consensus 212 ~l~~~kTk~l~~ll~~~~~~~svL~V~~~d-~~~~nl~~s~rNI~~v~i~~~~~lN--dlLk~d~lViT~~Al~~Le~~l 288 (309)
.++.+|||++.+++..++||.++|||+... .+++|+.+|++||..+++||+.++| ||||||++|||.+|++.|++|+
T Consensus 183 ~L~t~~pk~~~~l~~~~~~g~~vl~v~~~~~~~~e~l~~as~~L~~~n~ip~~glnv~s~lk~dtlvlt~~aVe~l~er~ 262 (290)
T KOG1624|consen 183 GLPTGKPKYLLNLLAQRNWGTSVLFVDEDHFEFDENLALASRRLGYLNLIPVGGLNVFSILKHDTLVLTREAVEFLEERL 262 (290)
T ss_pred CCCCCCcHHHHHHHHHHhcCCeeEEeccchhhchHHHHHHhhccCeeEeecccccchhhhhhcCceEecHHHHHHHHHHH
Confidence 999999999999999999999999999865 5889999999999999999999999 9999999999999999999999
Q ss_pred hhhhccC----cccccCCccc
Q psy5944 289 LLALNRS----DNERFTSRFV 305 (309)
Q Consensus 289 ~~~~~r~----~~~~~~~~f~ 305 (309)
++..+|+ +.....+.|+
T Consensus 263 ~~~~~r~~~~~~~~~~~~~~~ 283 (290)
T KOG1624|consen 263 LQQVNRELDADEYASMGSDFK 283 (290)
T ss_pred HHHHhhcccccchhhhccccc
Confidence 9999998 3334445555
No 4
>PF00573 Ribosomal_L4: Ribosomal protein L4/L1 family; InterPro: IPR002136 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes ribosomal L4/L1 from eukaryotes and plants and L4 from bacteria. L4 from yeast has been shown to bind rRNA []. These proteins have 246 (plant) to 427 (human) amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3IZR_D 1VSA_D 3D5D_F 3MS1_E 3F1F_F 3PYO_E 3MRZ_E 3F1H_F 3PYR_E 1VSP_D ....
Probab=100.00 E-value=1.4e-63 Score=445.23 Aligned_cols=188 Identities=31% Similarity=0.473 Sum_probs=177.5
Q ss_pred EEcCCcccCCCCchhHHHHHHHHHHHhCCCCcCCCceeeeecccCCCCccCCCCcccccCCCCCceecCCCcccchhhhH
Q psy5944 72 VNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEE 151 (309)
Q Consensus 72 v~L~p~iF~~~~r~dlIh~~V~~q~a~~Rqgta~tKtraEV~GsGRKpwrQKGTGrAR~Gs~rsP~~rGGG~af~~~~~~ 151 (309)
|+|||+||+.++|.|+||++|+||++|+||||++||+|+||+|||||||+||||||||+|+++||+|||||++|
T Consensus 1 i~L~~~vF~~~~r~~llh~~v~~~~~~~Rqgt~~tktr~ev~g~grKp~~QKGTGrAR~Gs~rsP~~rgGg~af------ 74 (192)
T PF00573_consen 1 IELSPDVFNVPVRPDLLHRAVVWQLANRRQGTASTKTRSEVSGSGRKPWPQKGTGRARQGSIRSPQWRGGGVAF------ 74 (192)
T ss_dssp -ES-CGGGGSSTSHHHHHHHHHHHHHHTSSBT-SSSTSTTSSSSSSSSSSSSSSSSSSSSSCTSTTSTTSSBSS------
T ss_pred CCCCHHHhCCCCcHHHHHHHHHHHHHhccCCccCCccceEEecccCcccCCCCCcccccCccccceeeccEEec------
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCccccccCCcccHHHHHHHHHHHhhhcCCCeEEEeccC-CCCCCHHHHHHHHHHcCC
Q psy5944 152 EEEEEEEEEEEEEEEEEITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLV-LPVDDPKYLENLVEERCW 230 (309)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~gP~~Pr~~~~klnkKvr~~lAl~saLS~K~~~~~L~VVd~l~-l~~~kTk~l~~ll~~~~~ 230 (309)
||++||+|+++||+|+| ++||++|||+|+.+++|+|||+|. ++.+|||++.++|+.+++
T Consensus 75 -------------------gPkp~r~~~~klnkK~r-~lAl~~aLs~k~~~~~l~vvd~~~~~~~~kTk~~~~~L~~~~~ 134 (192)
T PF00573_consen 75 -------------------GPKPPRDYSYKLNKKVR-RLALRSALSAKAAEGNLIVVDNFSPLEEPKTKDLVKLLKKLGL 134 (192)
T ss_dssp -------------------SSSSTSBCSHHHHHHHH-HHHHHHHHHHHHHTTHHHHCTSCSSSSSSSHHHHHHHHHHTTT
T ss_pred -------------------CCcccccceecCChHHH-HHHHHHHHHHhhcccceEEeeccccccccCHHHHHHHHHHhhh
Confidence 99955999999999999 999999999999999999999998 999999999999999999
Q ss_pred -CCceEEEecCCccchhHHHHHhCCCCceEecccchh--hhcCCCcEEEcHHHHHHHHHH
Q psy5944 231 -GPSVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDK 287 (309)
Q Consensus 231 -~~svL~V~~~d~~~~nl~~s~rNI~~v~i~~~~~lN--dlLk~d~lViT~~Al~~Le~~ 287 (309)
++++|||+++ .+.|+.+|+||||+|+++++.++| |||++++||||++||++|++|
T Consensus 135 ~~~~~L~V~~~--~~~~~~~a~rNl~~v~~~~~~~lnv~dll~~~~lv~t~~Al~~L~eR 192 (192)
T PF00573_consen 135 KGKSVLFVVGE--ENENLFRASRNLPGVDVLPVEGLNVYDLLKADKLVITKSALEKLEER 192 (192)
T ss_dssp SSSSEEEEESS--TSHCHHHHHCTSTTEEEEESTG--HHHHCHSSEEEEEHHHHHHHHH-
T ss_pred cccceEEEecC--CchHHHHHHHccCCeEEEecCcEeHHHHhCCCcEEEEHHHHHHHhcC
Confidence 7899999984 378999999999999999999999 999999999999999999986
No 5
>PRK14907 rplD 50S ribosomal protein L4; Provisional
Probab=100.00 E-value=1.9e-62 Score=462.87 Aligned_cols=187 Identities=19% Similarity=0.244 Sum_probs=179.1
Q ss_pred eEEcCCcccCCC-CchhHHHHHHHHHHHhCCCCcCCCceeeeecccCCCCccCCCCcccccCCCCCceecCCCcccchhh
Q psy5944 71 FVNLHPDIFGLV-PRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEE 149 (309)
Q Consensus 71 ~v~L~p~iF~~~-~r~dlIh~~V~~q~a~~Rqgta~tKtraEV~GsGRKpwrQKGTGrAR~Gs~rsP~~rGGG~af~~~~ 149 (309)
.++|+++||+.+ ++.++||++|+||++++|||||+||+|+||+||||||||||||||||+||+|||+|||||++|
T Consensus 103 ~ieL~~~vF~~e~~~~~llh~~V~~q~A~~RqGT~~TKtRsEVsGggkKPwrQKGTGRAR~GS~RSP~wrGGGvaF---- 178 (295)
T PRK14907 103 TSKLPKKLFASEKIYSQAIFDTILSERASRRQGTHKVKTRAEVSGTGKKPWRQKGTGRARAGSTRSPIFVGGGRAF---- 178 (295)
T ss_pred eEEeCHHHhCCCccchhHHHHHHHHHHHHhccccccccchhhccCCCCCCcccCCCCccCCCCCcCCcccCCeeec----
Confidence 589999999999 799999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcCCCccccccCCcccHHHHHHHHHHHhhhcCCCeEEEeccCCCCCCHHHHHHHHHHcC
Q psy5944 150 EEEEEEEEEEEEEEEEEEEITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERC 229 (309)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~gP~~Pr~~~~klnkKvr~~lAl~saLS~K~~~~~L~VVd~l~l~~~kTk~l~~ll~~~~ 229 (309)
||+|||+|+++||+|+| ++||+||||.++.+ +|+|||+|.++.+|||.+.++|..++
T Consensus 179 ---------------------GPkP~RdY~~KLNKKvR-rLALrsALS~ka~~-~LvVVd~~~le~~KTK~l~~~L~~lg 235 (295)
T PRK14907 179 ---------------------GPTPERNYKLKVNKKVR-FNAFVSALTLLANS-KAVLVDDFKLEKISTKDLIKKLTKLK 235 (295)
T ss_pred ---------------------CCCCccchhhhcCHHHH-HHHHHHHHHHhccC-CEEEEecccCCCCCHHHHHHHHHHcC
Confidence 99955999999999999 99999999999976 79999999999999999999999998
Q ss_pred CC--CceEEEecCCccchhHHHHHhCCCCceEecccchh--hhcCCCcEEEcHHHHHHHHHHH
Q psy5944 230 WG--PSVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKL 288 (309)
Q Consensus 230 ~~--~svL~V~~~d~~~~nl~~s~rNI~~v~i~~~~~lN--dlLk~d~lViT~~Al~~Le~~l 288 (309)
+. +++|||+. ++|+.+|+||||+|+++++++|| |||+||.||||++||++||++|
T Consensus 236 l~~~k~vLiV~~----denl~lSaRNLp~V~Vl~~~~LNVydLL~~~~vViT~~Al~~Leer~ 294 (295)
T PRK14907 236 INNLKHILIVSN----DENIFKSARNLQNVIVVKPTSLSVELLIAADVLVLSKESIENLEGRI 294 (295)
T ss_pred cccCCceEEEEC----CchHHHHHhCCCCceEeecCCccHHHHhcCCcEEEeHHHHHHHHHHh
Confidence 73 47999983 47999999999999999999999 9999999999999999999986
No 6
>PRK14547 rplD 50S ribosomal protein L4; Provisional
Probab=100.00 E-value=6e-62 Score=460.74 Aligned_cols=206 Identities=20% Similarity=0.222 Sum_probs=192.8
Q ss_pred eeeccCCCCceeeeEEcCCcccCCCCchhHHHHHHHHHHHhCCCCcCCCceeeeecccCCCCccCCCCcccccCCCCCce
Q psy5944 58 VENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERLDGKRRPRL 137 (309)
Q Consensus 58 v~~v~~~~g~~~g~v~L~p~iF~~~~r~dlIh~~V~~q~a~~Rqgta~tKtraEV~GsGRKpwrQKGTGrAR~Gs~rsP~ 137 (309)
..+|++++|+..|+|+|+++||+.++|.||||++|+||++++||||++||+|+||+||||||||||||||||+||+|||+
T Consensus 3 ~~~v~~~~g~~~g~ieL~~~vF~~~~r~dllh~vv~~q~a~~Rqgt~~tKtRaEV~G~GkKP~rQKGTGrAR~Gs~rsP~ 82 (298)
T PRK14547 3 TCDVLDWQGKKVGSAELPLKVFDVETNIPLIHQVVVAQMAAARQGTHHTKTRAEVRGGGKKPWRQKGTGRARQGSIRAPQ 82 (298)
T ss_pred eeEEeccCCCCcceEECCHHHhCCCccHHHHHHHHHHHHHhhhcCCCCCCceeeccCCCCCccCCCCCcccCcCCccCCc
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCcccchhhhHHHHHHHHHHHHHHHHHHhhhcCCCccccccCCcccHHHHHHHHHHHhhhcCCCeEEEeccC-CCCC
Q psy5944 138 YTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLV-LPVD 216 (309)
Q Consensus 138 ~rGGG~af~~~~~~~~~~~~~~~~~~~~~~~~~gP~~Pr~~~~klnkKvr~~lAl~saLS~K~~~~~L~VVd~l~-l~~~ 216 (309)
|||||++| ||+ ||+|+++||||+| ++||+||||.|+.+++|+|||+|. ++.+
T Consensus 83 wrGGGvaf-------------------------GPk-pR~y~~klNKK~r-rlAlrsALS~k~~~~~liVVd~~~~~~~~ 135 (298)
T PRK14547 83 WRGGGTVH-------------------------GPR-PREYNQRTPKKMR-QAALRGALSDRARDNRLIVVESLQDGDPP 135 (298)
T ss_pred eeCCeeec-------------------------CCC-CchhhhhcCHHHH-HHHHHHHHHHHHhcCCEEEEeCccccCCc
Confidence 99999999 999 8999999999999 999999999999999999999995 8999
Q ss_pred CHHHHHHHHHHcCCCCceEEEecCCccchhHHHHHhCCCCceEecccchh--hhcCCCcEEEcHHHHHHH---HHHHhhh
Q psy5944 217 DPKYLENLVEERCWGPSVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQI---EDKLLLA 291 (309)
Q Consensus 217 kTk~l~~ll~~~~~~~svL~V~~~d~~~~nl~~s~rNI~~v~i~~~~~lN--dlLk~d~lViT~~Al~~L---e~~l~~~ 291 (309)
|||.+.++|..++..+++|||++.+ +.++.+|+||||+|+++++.+|| |||++++||||++||+.| +.++...
T Consensus 136 KTK~~~~~L~~l~~~~~lLiv~~~~--~~~~~ls~RNL~~V~v~~~~~lNv~dLl~~~~vViT~~Al~~L~~~~~~~~~~ 213 (298)
T PRK14547 136 STKAVAQALSVMEDQRALLVVAERS--DAVERLSVRNLARVHVLGADQLNTYDVLNVDWVVFTQSALEAFVGAKSRWGSA 213 (298)
T ss_pred CHHHHHHHHHhcccCceEEEEecCc--cHHHHHHHhCCCCcEEEecCCccHHHHhCCCCEEEEHHHHHHHHhhccccccc
Confidence 9999999999888656677776533 56888899999999999999999 999999999999999999 6666543
Q ss_pred h
Q psy5944 292 L 292 (309)
Q Consensus 292 ~ 292 (309)
.
T Consensus 214 ~ 214 (298)
T PRK14547 214 A 214 (298)
T ss_pred c
Confidence 3
No 7
>COG0088 RplD Ribosomal protein L4 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.7e-55 Score=396.53 Aligned_cols=206 Identities=24% Similarity=0.300 Sum_probs=192.2
Q ss_pred eeeeccCCCCceeeeEEcCCcccCCCCchhHHHHHHHHHHHhCCCCcCCCceeeeecccCCCCccCCCCcccccCCCCCc
Q psy5944 57 WVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERLDGKRRPR 136 (309)
Q Consensus 57 ~v~~v~~~~g~~~g~v~L~p~iF~~~~r~dlIh~~V~~q~a~~Rqgta~tKtraEV~GsGRKpwrQKGTGrAR~Gs~rsP 136 (309)
+..+|++.+|+..|++.++|.+|+.+++.|+||++|.||++++|||||++|+|+||+|+|||||+|||||+||+|++++|
T Consensus 2 ~k~~v~~~~G~~~g~~~~~~~vf~~~~~~dli~~av~a~~a~~RQgt~~~k~rgevs~~g~Kp~~QkgtgraR~gs~rsP 81 (214)
T COG0088 2 MKLKVYDLDGEEVGEVELLPEVFGPERNEDLIHRAVLAQLANRRQGTHSTKTRGEVSGGGKKPWGQKGTGRARQGSIRSP 81 (214)
T ss_pred CcceEeCCCCCCccccccChhhccCCchHHHHHHHHHHHHHhhhccCCCCCCcccccccCcCCCCCCcCCcCCCCCCCCC
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCcccchhhhHHHHHHHHHHHHHHHHHHhhhcCCCccccccCCcccHHHHHHHHHHHhhhcCCCeEEEeccCCC-C
Q psy5944 137 LYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLP-V 215 (309)
Q Consensus 137 ~~rGGG~af~~~~~~~~~~~~~~~~~~~~~~~~~gP~~Pr~~~~klnkKvr~~lAl~saLS~K~~~~~L~VVd~l~l~-~ 215 (309)
+|||||++| ||+|+|+|+++||+|+| ++||+||||+++.+++|++++++.++ .
T Consensus 82 ~~rGGg~a~-------------------------gPkp~r~~~~klnkK~r-rlAl~sAls~ka~~~~lv~~~~~~~~~~ 135 (214)
T COG0088 82 QWRGGGVAH-------------------------GPKPERDYSQKLNKKER-RLALRSALSAKARAGKLVVVRGHVFEDA 135 (214)
T ss_pred eeecCcccc-------------------------CCCCccchhhhcCHHHH-HHHHHHHHHHhccCCCEEEEecccccCC
Confidence 999999999 99944999999999999 99999999999999999999999999 9
Q ss_pred CCHHHHHHHHHHcCCCC-ceEEEecCCccchhHHHHHhCCCCceEecccc-hh--hhcCCCcEEEcHHHHHHHHHHHhh
Q psy5944 216 DDPKYLENLVEERCWGP-SVLFVDNTDYMERNISIVTDQIKHYNIMPAYG-EN--NMLKHDTLVITVDALKQIEDKLLL 290 (309)
Q Consensus 216 ~kTk~l~~ll~~~~~~~-svL~V~~~d~~~~nl~~s~rNI~~v~i~~~~~-lN--dlLk~d~lViT~~Al~~Le~~l~~ 290 (309)
+|||.+.++|+++.... .+||+... .+.|+.+++||||++.++++.+ +| |++.+|.|+|+++|+..++++|..
T Consensus 136 ~kTK~~~~~lk~l~~~~~~~l~~~~~--~~~n~~ls~Rnl~~~~~~~~~~~~~~~Dv~~~~~l~i~~~A~~~~~~~l~~ 212 (214)
T COG0088 136 PKTKELVEFLKKLGLDVKRLLIVKGE--RDGNGKLSARNLKNVKVVLVVGGLPVVDVLRADKLVITKLAPGKIEERLTV 212 (214)
T ss_pred ccHHHHHHHHHHhhhhhceeEEeecc--cccceeecccCCCCceeeeeeccccceEEEeecceeeeHhhhhhhhhhhhc
Confidence 99999999999976643 46666543 3679999999999999999998 88 999999999999999999999864
No 8
>PRK04042 rpl4lp 50S ribosomal protein L4P; Provisional
Probab=100.00 E-value=4.4e-54 Score=399.62 Aligned_cols=194 Identities=15% Similarity=0.141 Sum_probs=183.2
Q ss_pred eeccCCCCceeeeEEcCCcccCCCCchhHHHHHHHHHHHhCCCCc-----CCCceeeeecccCC---CCccCCCCccccc
Q psy5944 59 ENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRF-----DHTKVTNEVERTGR---KPWPQKGLIERLD 130 (309)
Q Consensus 59 ~~v~~~~g~~~g~v~L~p~iF~~~~r~dlIh~~V~~q~a~~Rqgt-----a~tKtraEV~GsGR---KpwrQKGTGrAR~ 130 (309)
.++++.+|+..|+++|+. +|+.++|.|+||++|.||++|+|||| |+|||||||+|+|| ||||||||||||
T Consensus 3 v~v~~~~g~~~g~i~L~~-vF~~~~~~~lv~~vv~~~~an~Rqgt~~~~ta~tKtraev~G~Gr~~~Kp~rQKGTGrAr- 80 (254)
T PRK04042 3 AKVYDLDGEVVGEIELPA-VFEEPVRPDLIRRAVLAAQTARLQPKGRDPLAGKRTSAESWGSGRGIARVPRLKGGSRAA- 80 (254)
T ss_pred eEEEcCCCCCcceEehhH-hhCCCCcHHHHHHHHHHHHHhccCCCCCCccccCccceeEcCCCCCcCcCCccCCCCCcc-
Confidence 578889999999999975 99999999999999999999999994 99999999999999 999999999998
Q ss_pred CCCCCceecCCCcccchhhhHHHHHHHHHHHHHHHHHHhhhcCCC-ccccccCCcccHHHHHHHHHHHhhhcCC------
Q psy5944 131 GKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNP-CGLCRILPVMVHIVVGLTSTLSIKLMQD------ 203 (309)
Q Consensus 131 Gs~rsP~~rGGG~af~~~~~~~~~~~~~~~~~~~~~~~~~gP~~P-r~~~~klnkKvr~~lAl~saLS~K~~~~------ 203 (309)
|+|+|||||++| ||+ | |+|+++||+|+| ++||+||||+++.++
T Consensus 81 ---rsP~~rGGgv~f-------------------------gPk-p~R~y~~klnkK~r-rlAlrsALs~k~~~~lv~~~~ 130 (254)
T PRK04042 81 ---FVPQAVGGRRAH-------------------------PPK-VEKDLHEKINKKER-RLAIRSAIAATANPELVKARG 130 (254)
T ss_pred ---ccCccCcCCeeC-------------------------CCC-CCcccccccCHHHH-HHHHHHHHHHhhhhhhhhhcC
Confidence 999999999999 999 8 999999999999 999999999999885
Q ss_pred ---------CeEEEeccCCCCCCHHHHHHHHHHcCCC---------------------------CceEEEecCCccchhH
Q psy5944 204 ---------DLHIVKDLVLPVDDPKYLENLVEERCWG---------------------------PSVLFVDNTDYMERNI 247 (309)
Q Consensus 204 ---------~L~VVd~l~l~~~kTk~l~~ll~~~~~~---------------------------~svL~V~~~d~~~~nl 247 (309)
+|+|||+|. +.+|||++.++|+.+++. +++|||++. +.|+
T Consensus 131 ~~~~~~~e~~lvvvd~~~-~~~KTK~~~~~Lk~lg~~~~~~~~~~~~~~~~~kgk~r~~~~~~~~~~LiV~~~---d~~~ 206 (254)
T PRK04042 131 HVFEGVPELPLVVVDDFE-SLKKTKEVRELLEKLGLYDDVERAKEGKKIRAGKGKMRGRRYKKPKSVLIVVSD---DSPI 206 (254)
T ss_pred ccccCCCccCEEEEcccc-cccCHHHHHHHHHHcCCcccchhhhccceecccccccccccccCCCccEEEEcC---Ccce
Confidence 899999999 999999999999999873 369999863 5799
Q ss_pred HHHHhCCCCceEecccchh--hhcCC----CcEEEcHHHHHHHHHHH
Q psy5944 248 SIVTDQIKHYNIMPAYGEN--NMLKH----DTLVITVDALKQIEDKL 288 (309)
Q Consensus 248 ~~s~rNI~~v~i~~~~~lN--dlLk~----d~lViT~~Al~~Le~~l 288 (309)
.+|+||||+|+++++.++| |||.+ +.||||++||++|+++|
T Consensus 207 ~~s~RNi~~v~v~~~~~lnv~dLl~~~~~~~~vv~t~~Al~~l~e~~ 253 (254)
T PRK04042 207 VKAARNLPGVDVVTVDNLNVEHLAPGGHPGRLTVWTESAIEELRERF 253 (254)
T ss_pred eehhcCCCCCEEEecCCccHHHhhCcCCCCCeEEEEHHHHHHHHHHh
Confidence 9999999999999999999 99998 88999999999999986
No 9
>TIGR03672 rpl4p_arch 50S ribosomal protein L4P. One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.
Probab=100.00 E-value=3.9e-53 Score=392.71 Aligned_cols=193 Identities=16% Similarity=0.174 Sum_probs=181.8
Q ss_pred eeccCCCCceeeeEEcCCcccCCCCchhHHHHHHHHHHHhCCCCc-----CCCceeeeecccCC---CCccCCCCccccc
Q psy5944 59 ENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRF-----DHTKVTNEVERTGR---KPWPQKGLIERLD 130 (309)
Q Consensus 59 ~~v~~~~g~~~g~v~L~p~iF~~~~r~dlIh~~V~~q~a~~Rqgt-----a~tKtraEV~GsGR---KpwrQKGTGrAR~ 130 (309)
.++++++|+..|+++|+ ++|+.++|.|+||++|.||++|+|||| |+||||+||+|+|| |||||||||||
T Consensus 3 ~~v~~~~g~~~~~i~l~-~vF~~~~~~~lv~~vv~~~~an~Rqgt~~~~~a~tKtraev~G~Grg~aKp~rQKGTGrA-- 79 (251)
T TIGR03672 3 AKVYDLDGEVVGEIELP-AVFEEPVRPDLIKRAVLAAQTNRLQPYGADPYAGKRTSAESWGSGRGIARVPRIKGGSRA-- 79 (251)
T ss_pred eEEEccCCCCcceEehH-HhhCCCccHHHHHHHHHHHHHhccCCCCCCcccCcccceeEccCCCCcCCCCccCCCCcc--
Confidence 46788899999999997 599999999999999999999999999 56999999999999 99999999999
Q ss_pred CCCCCceecCCCcccchhhhHHHHHHHHHHHHHHHHHHhhhcCCC-ccccccCCcccHHHHHHHHHHHhhhcCC------
Q psy5944 131 GKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNP-CGLCRILPVMVHIVVGLTSTLSIKLMQD------ 203 (309)
Q Consensus 131 Gs~rsP~~rGGG~af~~~~~~~~~~~~~~~~~~~~~~~~~gP~~P-r~~~~klnkKvr~~lAl~saLS~K~~~~------ 203 (309)
+|+|+|||||++| ||+ | |+|+++||+|+| ++||+||||+++.++
T Consensus 80 --~rsP~~rGGGv~f-------------------------gPk-p~R~y~~klNkK~r-rlAl~sALs~k~~~~lv~~~~ 130 (251)
T TIGR03672 80 --ARVPQAVGGRRAH-------------------------PPK-VEKDLHEKINKKER-RLAIRSAIAATADPELVKARG 130 (251)
T ss_pred --eecCccCcCCeeC-------------------------CCC-CCcccceecCHHHH-HHHHHHHHHHhcchhhhhhcc
Confidence 7999999999999 999 7 999999999999 999999999999988
Q ss_pred --------CeEEEeccCCCCCCHHHHHHHHHHcCCC---------------------------CceEEEecCCccchhHH
Q psy5944 204 --------DLHIVKDLVLPVDDPKYLENLVEERCWG---------------------------PSVLFVDNTDYMERNIS 248 (309)
Q Consensus 204 --------~L~VVd~l~l~~~kTk~l~~ll~~~~~~---------------------------~svL~V~~~d~~~~nl~ 248 (309)
+|+|||+|. +.+|||.+.++|+.+++. .++|||++. +.|++
T Consensus 131 ~~~~~~e~~lvVvd~~~-~~~KTK~~~~~Lk~l~~~~~~~~~~~~~~~~~~kgk~~~r~~~~~~~~LiV~~~---~~~l~ 206 (251)
T TIGR03672 131 HVFEGDELPIVVVDDFE-SLKKTKEVRELLEALGVYDDIERAKEGKKIRAGKGKMRGRRYKEPKSVLIVVGD---DSGIS 206 (251)
T ss_pred cccccccccEEEEeCCC-CCCCHHHHHHHHHHcCCccccchhhccceeeccccccccccccCCCccEEEEcC---Ccchh
Confidence 899999999 999999999999999873 369999964 47999
Q ss_pred HHHhCCCCceEecccchh--hhcCC----CcEEEcHHHHHHHHHH
Q psy5944 249 IVTDQIKHYNIMPAYGEN--NMLKH----DTLVITVDALKQIEDK 287 (309)
Q Consensus 249 ~s~rNI~~v~i~~~~~lN--dlLk~----d~lViT~~Al~~Le~~ 287 (309)
+|+||||+|+++++.++| |||++ +.||||++||++|++|
T Consensus 207 ~s~RNi~~V~v~~~~~lNv~dLl~~~~~~~~vv~t~~Al~~l~e~ 251 (251)
T TIGR03672 207 KAARNLPGVDVVTVNNLNVEHLAPGGHPGRLTVWTESAIEKLEER 251 (251)
T ss_pred hhhcCCCCCEEEecCCccHHHhhCcCCCCCeEEEEHHHHHHHhcC
Confidence 999999999999999999 99998 7899999999999873
No 10
>PLN00185 60S ribosomal protein L4-1; Provisional
Probab=100.00 E-value=8e-48 Score=375.40 Aligned_cols=217 Identities=14% Similarity=0.077 Sum_probs=196.4
Q ss_pred eeeeccCCCC----ceeeeEEcCCcccCCCCchhHHHHHHHHHHHhCCCCcCCC-----ceeeeecccCCCCc---cCC-
Q psy5944 57 WVENLDTTEE----KHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHT-----KVTNEVERTGRKPW---PQK- 123 (309)
Q Consensus 57 ~v~~v~~~~g----~~~g~v~L~p~iF~~~~r~dlIh~~V~~q~a~~Rqgta~t-----KtraEV~GsGRKpw---rQK- 123 (309)
++++|++++| +..|+|+|| .||+.|+|.||||+++.++++|+||+++.+ +|+|||||+||||| |||
T Consensus 7 p~v~V~~~~g~~~~~~~~~v~Lp-~VF~~piR~dlv~~v~~~~~~n~RQp~~~~~~AG~qtsAeswGtGR~vaRiPR~kg 85 (405)
T PLN00185 7 PLVSVQSLDGDMATDKSATVALP-DVMTAPIRPDIVNFVHTNISKNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPG 85 (405)
T ss_pred CeeEEEcCCCCccccccceeehH-HHhCCCCCHHHHHHHHHHHHHhccCCCCCCcccCCcceeeecCCCCCceecccccC
Confidence 5678999999 678999996 999999999999999999999999999988 99999999999999 999
Q ss_pred -CCcccccCCCCCceecCCCcccchhhhHHHHHHHHHHHHHHHHHHhhhcCCC--ccccccCCcccHHHHHHHHHHHhhh
Q psy5944 124 -GLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNP--CGLCRILPVMVHIVVGLTSTLSIKL 200 (309)
Q Consensus 124 -GTGrAR~Gs~rsP~~rGGG~af~~~~~~~~~~~~~~~~~~~~~~~~~gP~~P--r~~~~klnkKvr~~lAl~saLS~K~ 200 (309)
||||||||+. |.|+|||++| ||+ | |+|+++||+|+| ++|++||||+++
T Consensus 86 gGT~RAgqGa~--~~~~rGGr~F-------------------------gP~-p~~R~~~~KvNkK~r-RlAl~SALAa~a 136 (405)
T PLN00185 86 GGTHRAGQGAF--GNMCRGGRMF-------------------------APT-KTWRRWHRKVNVNQK-RYAVVSALAASA 136 (405)
T ss_pred CCCCcCCccCc--CCcCCCCeeC-------------------------CCC-CCccccccccCHHHH-HHHHHHHHHhhc
Confidence 8999999999 8999999999 999 7 999999999999 999999999998
Q ss_pred c------CC-Ce-------EEEeccCCCCCCHHHHHHHHHHcCCC---------------------------CceEEEec
Q psy5944 201 M------QD-DL-------HIVKDLVLPVDDPKYLENLVEERCWG---------------------------PSVLFVDN 239 (309)
Q Consensus 201 ~------~~-~L-------~VVd~l~l~~~kTk~l~~ll~~~~~~---------------------------~svL~V~~ 239 (309)
. .| +| +||+|+....+|||.+.++|+.+++. +++|||++
T Consensus 137 ~~~lV~arGH~i~~v~e~pLVV~d~~e~~~KTK~av~~Lk~lg~~~d~~k~~~s~~iRaGkGKmR~Rr~~~~kg~LIV~~ 216 (405)
T PLN00185 137 VPSLVMARGHKIENVPEVPLVVSDSAESIEKTSAAIKILKQIGAYADVEKAKDSKGIRAGKGKMRNRRYVSRKGPLVVYG 216 (405)
T ss_pred cchhhhcccccccccccCCEEEEeCccCCcCHHHHHHHHHHcCCcccchhhhcccccccccccccccccccCCceEEEEc
Confidence 3 33 22 46777667789999999999999862 24899997
Q ss_pred CCccchhHHHHHhCCCCceEecccchh--hhcCCC----cEEEcHHHHHHHHHHHhhhhccCcccccCCcccccC
Q psy5944 240 TDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHD----TLVITVDALKQIEDKLLLALNRSDNERFTSRFVIDT 308 (309)
Q Consensus 240 ~d~~~~nl~~s~rNI~~v~i~~~~~lN--dlLk~d----~lViT~~Al~~Le~~l~~~~~r~~~~~~~~~f~~~~ 308 (309)
.+ +.++.+|+||||+|+++++++|| +|+.++ .||||++|+++|+++|+.....| ..|+.|.||.
T Consensus 217 ~~--~~~l~kA~RNIPgV~v~~v~~LNv~dLapggh~gr~vI~TesA~~~Lee~~g~~~~~s---~~k~~~~lp~ 286 (405)
T PLN00185 217 TE--GAKIVKAFRNIPGVELCSVDRLNLLQLAPGGHLGRFVIWTKSAFEKLDSIYGTFEKPS---EKKKGYVLPR 286 (405)
T ss_pred CC--chhhhhhhcCCCCCeEEecCCccHHHHhccCCCCCEEEEEhHHHHHHHHHhcccccch---hhccCCCCCc
Confidence 54 67899999999999999999999 999966 79999999999999999887776 4789999985
No 11
>PTZ00428 60S ribosomal protein L4; Provisional
Probab=100.00 E-value=5.3e-44 Score=346.93 Aligned_cols=213 Identities=14% Similarity=0.126 Sum_probs=178.0
Q ss_pred eeeeccCCCC-ceeeeEEcCCcccCCCCchhHHHHHHHHHHHhCCCCcCCCceeeeecccCCCCccCCCCccccc-----
Q psy5944 57 WVENLDTTEE-KHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERLD----- 130 (309)
Q Consensus 57 ~v~~v~~~~g-~~~g~v~L~p~iF~~~~r~dlIh~~V~~q~a~~Rqgta~tKtraEV~GsGRKpwrQKGTGrAR~----- 130 (309)
+..+|++.+| +..|+++|+ +||+.++|.||||+++.+|++|+||||+.++++++ ++++||| ||||||+
T Consensus 5 ~~v~V~~~~g~~~~~~v~Lp-~VF~~pir~dlV~~vv~~~~aN~RQgta~s~~ag~--~tsaksw---GTGRA~aripR~ 78 (381)
T PTZ00428 5 PVVSVYSASDKSVVGTVPLP-AVFTAPIRPDLVQFVHTNMAKNRRQAYAVKPLAGM--QHSAESW---GTGRAVARIPRV 78 (381)
T ss_pred CeeEEEcCCCCcccceEehH-HhhCCCCcHHHHHHHHHHHHHhccCCCCcCCCCCC--CCCceec---CCCCCccccccc
Confidence 5678999998 678999997 89999999999999999999999999999955555 4555555 5555555
Q ss_pred ---CCCCCce-----ecCCCcccchhhhHHHHHHHHHHHHHHHHHHhhhcCCC--ccccccCCcccHHHHHHHHHHHhhh
Q psy5944 131 ---GKRRPRL-----YTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNP--CGLCRILPVMVHIVVGLTSTLSIKL 200 (309)
Q Consensus 131 ---Gs~rsP~-----~rGGG~af~~~~~~~~~~~~~~~~~~~~~~~~~gP~~P--r~~~~klnkKvr~~lAl~saLS~K~ 200 (309)
|+.|||+ |++||++| ||+ | |+|+++||+|+| ++|++||||+++
T Consensus 79 kg~GT~Rs~qGa~~n~~rGG~~F-------------------------gP~-~~~R~~~~KvNkK~r-R~Al~SALaa~a 131 (381)
T PTZ00428 79 SGGGTHRSGQGAFGNMCRGGRMF-------------------------APT-KTWRRWHRKVNLNQK-RHAVASALAASG 131 (381)
T ss_pred cCCCCCcCcccccCCcCCCceEc-------------------------CCC-CCccccccccCHHHH-HHHHHHHHHhhc
Confidence 5555555 77777899 999 7 999999999999 999999999997
Q ss_pred c-------CCCe-------EEEeccCCCCCCHHHHHHHHHHcCCCC---------------------------ceEEEec
Q psy5944 201 M-------QDDL-------HIVKDLVLPVDDPKYLENLVEERCWGP---------------------------SVLFVDN 239 (309)
Q Consensus 201 ~-------~~~L-------~VVd~l~l~~~kTk~l~~ll~~~~~~~---------------------------svL~V~~ 239 (309)
. .++| +||+|+....+|||.+.++|+.+++.. ++|||++
T Consensus 132 ~~~lv~argh~i~~v~e~plVV~d~~e~~~KTK~av~~Lk~lg~~~d~~k~~~s~~~R~gkGk~R~rr~~~~~g~LIV~~ 211 (381)
T PTZ00428 132 VPALVMARGHRISNVPEVPLVVSDSVESYEKTKEAVAFLKALGAFDDVNRVNDSKKIRAGKGKMRNRRYVMRRGPLVVYA 211 (381)
T ss_pred cchhhhcccccccccccCCEEEEcCcCCCCCHHHHHHHHHHcCCcccchhhhcccccccccccccccccccCCceEEEEc
Confidence 3 3333 456665445589999999999998631 3999996
Q ss_pred CCccchhHHHHHhCCCCceEecccchh--hhcCC----CcEEEcHHHHHHHHHHHhhhhccCcccccCCcccccC
Q psy5944 240 TDYMERNISIVTDQIKHYNIMPAYGEN--NMLKH----DTLVITVDALKQIEDKLLLALNRSDNERFTSRFVIDT 308 (309)
Q Consensus 240 ~d~~~~nl~~s~rNI~~v~i~~~~~lN--dlLk~----d~lViT~~Al~~Le~~l~~~~~r~~~~~~~~~f~~~~ 308 (309)
. +.++.+|+||||+|+++++++|| +|+.+ +.||||++|++.|++.|+.....| ..|+.|.||.
T Consensus 212 ~---d~~l~~A~RNIpgV~v~~v~~LNv~dLapggh~gr~vI~TesA~~~L~~~~gt~~~~s---~~k~~~~lp~ 280 (381)
T PTZ00428 212 N---DNGVTKAFRNIPGVDLCNVTRLNLLQLAPGGHVGRFIIWTKSAFKKLDKIFGTYTEAS---ALKKGYTLPR 280 (381)
T ss_pred C---CcchhhhhcCCCCcEEEecCCccHHHHhccCCCCCEEEEEhHHHHHHHHHhcccccch---hhccCCCCCc
Confidence 4 57899999999999999999999 99995 479999999999999999887666 4789999995
No 12
>KOG1475|consensus
Probab=99.90 E-value=1.3e-23 Score=199.58 Aligned_cols=215 Identities=14% Similarity=0.087 Sum_probs=172.3
Q ss_pred eeeccCCCCceee-eEEcCCcccCCCCchhHHHHHHHHHHHhCCCCcC-----CCceeeeecccCCCC---ccCCCCc--
Q psy5944 58 VENLDTTEEKHFG-FVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFD-----HTKVTNEVERTGRKP---WPQKGLI-- 126 (309)
Q Consensus 58 v~~v~~~~g~~~g-~v~L~p~iF~~~~r~dlIh~~V~~q~a~~Rqgta-----~tKtraEV~GsGRKp---wrQKGTG-- 126 (309)
..++|+.+|+.+. .+.| |.+|..|+|+|+++-+......|+||.++ ...++||.||+||-. .|-+|.|
T Consensus 6 ~vtvy~~~g~~s~~~l~l-p~vf~aPiRpdlv~~v~~~~~~n~rQpyAVs~kAG~QtSAESWGTGRAvaRiPRV~GGGT~ 84 (363)
T KOG1475|consen 6 LVTVYSLDGEASKKTLTL-PAVFSAPIRPDLVNFVHTQVRKNRRQPYAVSEKAGHQTSAESWGTGRAVARIPRVGGGGTH 84 (363)
T ss_pred eeeEEecccccccccccc-cceeccCCcHHHHHHHHHHHhhccccchhhhhhhccccchhhcccccceecccccCCCCcc
Confidence 5678888888654 7888 89999999999999999999999999975 568899999999953 3455555
Q ss_pred ccccCCCCCceecCCCcccchhhhHHHHHHHHHHHHHHHHHHhhhcCCC-ccccccCCcccHHHHHHHHHHHhhhcC---
Q psy5944 127 ERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNP-CGLCRILPVMVHIVVGLTSTLSIKLMQ--- 202 (309)
Q Consensus 127 rAR~Gs~rsP~~rGGG~af~~~~~~~~~~~~~~~~~~~~~~~~~gP~~P-r~~~~klnkKvr~~lAl~saLS~K~~~--- 202 (309)
|+-||...+ +.-||..| +|... |.|++++|..++ +.|+.||+++....
T Consensus 85 RsGQgAFgN--mCR~GrMf-------------------------aPtKt~RrW~rkVn~n~K-r~A~asaiaasavpaLv 136 (363)
T KOG1475|consen 85 RSGQGAFGN--MCRGGRMF-------------------------APTKTWRRWHRKVNENEK-RYAIASAIAASAVPALV 136 (363)
T ss_pred cccchhhhh--hccccccc-------------------------CchhhHHHHhhhhhhhhh-hhHHHhhhhhhhhhHHH
Confidence 555555544 66777888 78744 889999999999 99999999887531
Q ss_pred ---C---------CeEEEeccCCCCCCHHHHHHHHHHcCC-C--------------------------CceEEEecCCcc
Q psy5944 203 ---D---------DLHIVKDLVLPVDDPKYLENLVEERCW-G--------------------------PSVLFVDNTDYM 243 (309)
Q Consensus 203 ---~---------~L~VVd~l~l~~~kTk~l~~ll~~~~~-~--------------------------~svL~V~~~d~~ 243 (309)
| .|+|-|+++ +..|||+...+|++++. . ...|+|.+.|
T Consensus 137 ~arGHrIe~VpelPlVVsd~ve-~~~KTkeAV~~Lk~~~a~~di~kv~~S~~~RaGKGKmRNRr~~QrrGPlVVy~Ed-- 213 (363)
T KOG1475|consen 137 MARGHRIEEVPELPLVVSDKVE-SFRKTKEAVALLKKLKAWNDIKKVYNSRRLRAGKGKMRNRRYIQRRGPLVVYNED-- 213 (363)
T ss_pred HhcCccccccccCceEeehhhH-HHHhHHHHHHHHHHhccHHHHHHHHhhcccccCccchhhhhhhhhcCCEEEEecC--
Confidence 1 344444444 67899999999997763 2 3589999764
Q ss_pred chhHHHHHhCCCCceEecccchh-hhcC-----CCcEEEcHHHHHHHHHHHhhhhccCcccccCCcccccC
Q psy5944 244 ERNISIVTDQIKHYNIMPAYGEN-NMLK-----HDTLVITVDALKQIEDKLLLALNRSDNERFTSRFVIDT 308 (309)
Q Consensus 244 ~~nl~~s~rNI~~v~i~~~~~lN-dlLk-----~d~lViT~~Al~~Le~~l~~~~~r~~~~~~~~~f~~~~ 308 (309)
..+.+++||||+|++|.++.|| --|. .+.||||++|++.|+..|+....-+ ++|+.|.||-
T Consensus 214 -~~ivkAFRNIpGV~~~nV~~LnlLkLAPGghlGRfvIWTeSAF~kLd~i~Gs~~~~a---~lk~gy~lP~ 280 (363)
T KOG1475|consen 214 -NGIVKAFRNIPGVELMNVERLNLLKLAPGGHLGRFVIWTESAFEKLDSIYGSTEKAA---ELKKGYKLPN 280 (363)
T ss_pred -cchhhhhcCCCcceeechhhhhhhhcCCCcccceeEEeehHHhhhHHhhcccchhhh---hcccCccCcc
Confidence 7799999999999999999999 3333 2799999999999999998877644 6899999984
No 13
>PTZ00428 60S ribosomal protein L4; Provisional
Probab=94.71 E-value=0.019 Score=57.43 Aligned_cols=45 Identities=18% Similarity=0.116 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhCCCCcCCCceeeeecccCCCCc---cCC--CCcccccCC
Q psy5944 88 ITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPW---PQK--GLIERLDGK 132 (309)
Q Consensus 88 Ih~~V~~q~a~~Rqgta~tKtraEV~GsGRKpw---rQK--GTGrAR~Gs 132 (309)
..+.-..-+.+....++..++++++||+||+++ ||| ||+||++|+
T Consensus 41 ~~~~aN~RQgta~s~~ag~~tsakswGTGRA~aripR~kg~GT~Rs~qGa 90 (381)
T PTZ00428 41 TNMAKNRRQAYAVKPLAGMQHSAESWGTGRAVARIPRVSGGGTHRSGQGA 90 (381)
T ss_pred HHHHHhccCCCCcCCCCCCCCCceecCCCCCccccccccCCCCCcCcccc
Confidence 333334444555566677789999999999999 999 777999855
No 14
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=84.30 E-value=0.17 Score=56.14 Aligned_cols=6 Identities=33% Similarity=0.590 Sum_probs=2.3
Q ss_pred CCCccc
Q psy5944 140 GKGEEK 145 (309)
Q Consensus 140 GGG~af 145 (309)
||....
T Consensus 860 ~~dse~ 865 (1096)
T TIGR00927 860 GGDSEE 865 (1096)
T ss_pred cccccc
Confidence 333333
No 15
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=83.48 E-value=0.17 Score=58.92 Aligned_cols=9 Identities=11% Similarity=0.065 Sum_probs=4.7
Q ss_pred CCcEEEcHH
Q psy5944 271 HDTLVITVD 279 (309)
Q Consensus 271 ~d~lViT~~ 279 (309)
+-.|++++.
T Consensus 313 apyv~l~~~ 321 (2849)
T PTZ00415 313 APYVTLTKA 321 (2849)
T ss_pred CceEEEEcc
Confidence 345666544
No 16
>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins. They function as nuclear chaperones which are needed for the proper assembly of nucleosomes and the attainment of proper higher order chromatin structures [].; GO: 0003676 nucleic acid binding; PDB: 2P1B_E 1XB9_I 1XE0_C 1NLQ_A 2VTX_E 1K5J_D 1EJY_N 1EE5_B 3T30_J.
Probab=70.73 E-value=1.4 Score=38.81 Aligned_cols=8 Identities=13% Similarity=0.144 Sum_probs=3.0
Q ss_pred cceeeecc
Q psy5944 55 QAWVENLD 62 (309)
Q Consensus 55 ~~~v~~v~ 62 (309)
.+.+.+|.
T Consensus 63 kv~lAtLk 70 (149)
T PF03066_consen 63 KVPLATLK 70 (149)
T ss_dssp EEEEEEEB
T ss_pred EEEEEEec
Confidence 33333333
No 17
>KOG1834|consensus
Probab=65.58 E-value=1.7 Score=47.05 Aligned_cols=12 Identities=42% Similarity=0.454 Sum_probs=7.6
Q ss_pred hccccCCCccce
Q psy5944 46 FQNAFLQPRQAW 57 (309)
Q Consensus 46 ~~~~~~~p~~~~ 57 (309)
++|+|.++.-..
T Consensus 796 ~qp~F~q~gh~~ 807 (952)
T KOG1834|consen 796 FQPQFLQLGHSP 807 (952)
T ss_pred ccccccccccCC
Confidence 467887766443
No 18
>KOG1832|consensus
Probab=64.59 E-value=1.3 Score=49.46 Aligned_cols=11 Identities=18% Similarity=0.262 Sum_probs=4.3
Q ss_pred CCCCceecCCC
Q psy5944 132 KRRPRLYTGKG 142 (309)
Q Consensus 132 s~rsP~~rGGG 142 (309)
|....+|-=|.
T Consensus 1389 sT~~r~yEIGR 1399 (1516)
T KOG1832|consen 1389 STSARMYEIGR 1399 (1516)
T ss_pred hhhhhhhhhcc
Confidence 33344443333
No 19
>PHA02324 hypothetical protein
Probab=63.46 E-value=5.2 Score=29.14 Aligned_cols=29 Identities=21% Similarity=0.298 Sum_probs=24.5
Q ss_pred HHhCCCCc-CCCceeeeecccCCCCccCCC
Q psy5944 96 KKYKWVRF-DHTKVTNEVERTGRKPWPQKG 124 (309)
Q Consensus 96 ~a~~Rqgt-a~tKtraEV~GsGRKpwrQKG 124 (309)
-++-|||. .+||-.|..+.+-|||||..|
T Consensus 17 PK~TRQG~G~~TKysATsRN~akK~YRGQG 46 (47)
T PHA02324 17 PKKTRQGQGKNTKYSATSRNNAKKPYRGQG 46 (47)
T ss_pred CccccccCCccceeeeeccccccCcccCCC
Confidence 35678886 589999999999999999765
No 20
>PF01056 Myc_N: Myc amino-terminal region; InterPro: IPR012682 The class III basic helix-turn-helix (bHLH) transcription factors have proliferative and apoptotic roles and are characterised by the presence of a leucine zipper adjacent to the bHLH domain. The myc oncogene gene was first discovered in small-cell lung cancer cell lines where it is found to be deregulated []. Although the biochemical function of the gene product is unknown, as a nuclear protein with a short half-life it may play a direct or indirect role in controlling gene expression []. Myc forms a heterodimer with Max, and this complex regulates cell growth through direct activation of genes involved in cell replication []. This entry represents the N-terminal domain found adjacent to the basic helix-loop-helix (bHLH) region (IPR001092 from INTERPRO).; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1EE4_C.
Probab=56.34 E-value=3.7 Score=40.70 Aligned_cols=15 Identities=87% Similarity=1.112 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHh
Q psy5944 155 EEEEEEEEEEEEEEI 169 (309)
Q Consensus 155 ~~~~~~~~~~~~~~~ 169 (309)
++++++|||||||||
T Consensus 230 ~~~~~~eeeeeeEEI 244 (329)
T PF01056_consen 230 SDEEEEEEEEEEEEI 244 (329)
T ss_dssp ---------------
T ss_pred cccccccccCCCcce
Confidence 334444444555555
No 21
>PHA03171 UL37 tegument protein; Provisional
Probab=56.22 E-value=3.9 Score=41.96 Aligned_cols=17 Identities=59% Similarity=0.716 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHhhhcC
Q psy5944 157 EEEEEEEEEEEEITATL 173 (309)
Q Consensus 157 ~~~~~~~~~~~~~~gP~ 173 (309)
+-|+|+|+||||+.+|.
T Consensus 97 d~~~~~~~~eee~e~~~ 113 (499)
T PHA03171 97 DTEAEEEDEEEEIEAPD 113 (499)
T ss_pred chhhhhhhhhhhccCCC
Confidence 34455556666676777
No 22
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=53.95 E-value=22 Score=31.25 Aligned_cols=69 Identities=14% Similarity=0.170 Sum_probs=39.9
Q ss_pred cCCCeEEEecc-CCCCCCHHHHHHHHHHcCCCCceEEEecCCccchhHHHHHhCCCCceEecccchh-hhcC
Q psy5944 201 MQDDLHIVKDL-VLPVDDPKYLENLVEERCWGPSVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN-NMLK 270 (309)
Q Consensus 201 ~~~~L~VVd~l-~l~~~kTk~l~~ll~~~~~~~svL~V~~~d~~~~nl~~s~rNI~~v~i~~~~~lN-dlLk 270 (309)
.+.+|+|+|.+ .++....+....+.+.+.-++.+|-|.... .+..+....++.+++.++.....| |.|.
T Consensus 94 ~~~~liviDEIG~mEl~~~~F~~~v~~~l~s~~~vi~vv~~~-~~~~~l~~i~~~~~~~i~~vt~~NRd~l~ 164 (168)
T PF03266_consen 94 SSSDLIVIDEIGKMELKSPGFREAVEKLLDSNKPVIGVVHKR-SDNPFLEEIKRRPDVKIFEVTEENRDALP 164 (168)
T ss_dssp HCCHEEEE---STTCCC-CHHHHHHHHHHCTTSEEEEE--SS---SCCHHHHHTTTTSEEEE--TTTCCCHH
T ss_pred CCCCEEEEeccchhhhcCHHHHHHHHHHHcCCCcEEEEEecC-CCcHHHHHHHhCCCcEEEEeChhHHhhHh
Confidence 56789999997 344444555555555555344566665432 145578889999999999999999 6553
No 23
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=49.67 E-value=2.6 Score=49.83 Aligned_cols=6 Identities=17% Similarity=0.534 Sum_probs=2.5
Q ss_pred cccccC
Q psy5944 303 RFVIDT 308 (309)
Q Consensus 303 ~f~~~~ 308 (309)
+|.||.
T Consensus 363 ~f~lpp 368 (2849)
T PTZ00415 363 EFTLPP 368 (2849)
T ss_pred EEecCC
Confidence 344443
No 24
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=47.37 E-value=2.5 Score=41.19 Aligned_cols=19 Identities=21% Similarity=0.100 Sum_probs=8.0
Q ss_pred ceeeeecccCC--CCccCCCC
Q psy5944 107 KVTNEVERTGR--KPWPQKGL 125 (309)
Q Consensus 107 KtraEV~GsGR--KpwrQKGT 125 (309)
+...+.+-|.| |--||.+.
T Consensus 220 ~eTkdLSmStR~hkyGRQ~~~ 240 (314)
T PF06524_consen 220 QETKDLSMSTRSHKYGRQGQA 240 (314)
T ss_pred cccccceeeeecchhccccCC
Confidence 33344444444 23355443
No 25
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=46.73 E-value=3 Score=40.65 Aligned_cols=7 Identities=29% Similarity=0.155 Sum_probs=3.2
Q ss_pred HhCCCCc
Q psy5944 97 KYKWVRF 103 (309)
Q Consensus 97 a~~Rqgt 103 (309)
++-||+.
T Consensus 233 kyGRQ~~ 239 (314)
T PF06524_consen 233 KYGRQGQ 239 (314)
T ss_pred hhccccC
Confidence 3445543
No 26
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=42.42 E-value=43 Score=29.52 Aligned_cols=45 Identities=11% Similarity=0.250 Sum_probs=26.1
Q ss_pred ceEEEecCCccchhHHHHHhCCC-CceEecccchh--hhcCCCcEEEc
Q psy5944 233 SVLFVDNTDYMERNISIVTDQIK-HYNIMPAYGEN--NMLKHDTLVIT 277 (309)
Q Consensus 233 svL~V~~~d~~~~nl~~s~rNI~-~v~i~~~~~lN--dlLk~d~lViT 277 (309)
++|||++.|....|+...++... .+.+++.+..+ ++-.+|.|||+
T Consensus 3 ~iliid~~dsf~~~i~~~l~~~g~~~~v~~~~~~~~~~l~~~d~iIi~ 50 (190)
T PRK06895 3 KLLIINNHDSFTFNLVDLIRKLGVPMQVVNVEDLDLDEVENFSHILIS 50 (190)
T ss_pred EEEEEeCCCchHHHHHHHHHHcCCcEEEEECCccChhHhccCCEEEEC
Confidence 46677766666666666666652 34555544333 44456667765
No 27
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=39.45 E-value=5.5 Score=32.27 Aligned_cols=13 Identities=15% Similarity=-0.077 Sum_probs=1.2
Q ss_pred CcccHHHHHHHHH
Q psy5944 183 PVMVHIVVGLTST 195 (309)
Q Consensus 183 nkKvr~~lAl~sa 195 (309)
|+|-|..++|-..
T Consensus 61 ~rkKrrwlwLlik 73 (81)
T PF14812_consen 61 PRKKRRWLWLLIK 73 (81)
T ss_dssp ----------TTT
T ss_pred ccccchhHHHHHH
Confidence 5555536665443
No 28
>PF04712 Radial_spoke: Radial spokehead-like protein
Probab=34.83 E-value=10 Score=39.35 Aligned_cols=12 Identities=8% Similarity=0.293 Sum_probs=7.6
Q ss_pred CCeEEEeccCCC
Q psy5944 203 DDLHIVKDLVLP 214 (309)
Q Consensus 203 ~~L~VVd~l~l~ 214 (309)
..++|+.++..+
T Consensus 415 ~~v~vlrS~~WP 426 (491)
T PF04712_consen 415 YAVVVLRSNLWP 426 (491)
T ss_pred cceEEEEecCcC
Confidence 467777776554
No 29
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=32.70 E-value=76 Score=28.11 Aligned_cols=12 Identities=17% Similarity=-0.172 Sum_probs=5.4
Q ss_pred HHHHHHHHHHcC
Q psy5944 218 PKYLENLVEERC 229 (309)
Q Consensus 218 Tk~l~~ll~~~~ 229 (309)
|..+..+|.+++
T Consensus 12 t~nl~~~l~~~g 23 (187)
T PRK08007 12 TWNLYQYFCELG 23 (187)
T ss_pred HHHHHHHHHHCC
Confidence 444444444443
No 30
>PF15470 DUF4637: Domain of unknown function (DUF4637)
Probab=31.63 E-value=14 Score=33.44 Aligned_cols=13 Identities=23% Similarity=0.340 Sum_probs=8.1
Q ss_pred CCCceecCCCccc
Q psy5944 133 RRPRLYTGKGEEK 145 (309)
Q Consensus 133 ~rsP~~rGGG~af 145 (309)
.+.|+|..-=...
T Consensus 6 ~KtPLWKKe~Ee~ 18 (173)
T PF15470_consen 6 VKTPLWKKEPEEP 18 (173)
T ss_pred ccCcccccCcccc
Confidence 3589998644333
No 31
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=31.43 E-value=74 Score=29.57 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=30.2
Q ss_pred ceEEEecCCccchhHHHHHhCCC-CceEecccchh----hhcCCCcEEEcH
Q psy5944 233 SVLFVDNTDYMERNISIVTDQIK-HYNIMPAYGEN----NMLKHDTLVITV 278 (309)
Q Consensus 233 svL~V~~~d~~~~nl~~s~rNI~-~v~i~~~~~lN----dlLk~d~lViT~ 278 (309)
.+|+||+.|.+--|+..-++++. .+.|+.-+.+. +-+++|.|||+.
T Consensus 3 ~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~~~pd~iviSP 53 (191)
T COG0512 3 MILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEALKPDAIVISP 53 (191)
T ss_pred eEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHhhcCCCEEEEcC
Confidence 47778777766677777777764 45555444343 456788888863
No 32
>PF01056 Myc_N: Myc amino-terminal region; InterPro: IPR012682 The class III basic helix-turn-helix (bHLH) transcription factors have proliferative and apoptotic roles and are characterised by the presence of a leucine zipper adjacent to the bHLH domain. The myc oncogene gene was first discovered in small-cell lung cancer cell lines where it is found to be deregulated []. Although the biochemical function of the gene product is unknown, as a nuclear protein with a short half-life it may play a direct or indirect role in controlling gene expression []. Myc forms a heterodimer with Max, and this complex regulates cell growth through direct activation of genes involved in cell replication []. This entry represents the N-terminal domain found adjacent to the basic helix-loop-helix (bHLH) region (IPR001092 from INTERPRO).; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1EE4_C.
Probab=31.18 E-value=16 Score=36.30 Aligned_cols=20 Identities=65% Similarity=0.875 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q psy5944 151 EEEEEEEEEEEEEEEEEEIT 170 (309)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~ 170 (309)
+++++++||||||||=.-.|
T Consensus 229 ~~~~~~~eeeeeeEEIDVVT 248 (329)
T PF01056_consen 229 DSDEEEEEEEEEEEEIDVVT 248 (329)
T ss_dssp --------------------
T ss_pred ccccccccccCCCcceEEEE
Confidence 34444444444455544443
No 33
>PF11081 DUF2890: Protein of unknown function (DUF2890); InterPro: IPR021304 This entry contains the 33kDa and 22kDa phosphoproteins from vertebrate adenoviruses.
Probab=30.58 E-value=13 Score=34.43 Aligned_cols=10 Identities=80% Similarity=0.896 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q psy5944 158 EEEEEEEEEE 167 (309)
Q Consensus 158 ~~~~~~~~~~ 167 (309)
|+||+||++.
T Consensus 51 E~EE~eEe~~ 60 (187)
T PF11081_consen 51 EEEEVEEEEA 60 (187)
T ss_pred hhhhcccccc
Confidence 3333344433
No 34
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=30.39 E-value=1.1e+02 Score=26.53 Aligned_cols=50 Identities=24% Similarity=0.337 Sum_probs=38.0
Q ss_pred CCeEEEeccCCCCCCHHHHHHHHHHcCCCC-ceEEEecCCccchhHHHHHhCCC
Q psy5944 203 DDLHIVKDLVLPVDDPKYLENLVEERCWGP-SVLFVDNTDYMERNISIVTDQIK 255 (309)
Q Consensus 203 ~~L~VVd~l~l~~~kTk~l~~ll~~~~~~~-svL~V~~~d~~~~nl~~s~rNI~ 255 (309)
+.+++.++.-...|.++.+..+++.++..+ .+|+|++. ..|...+++++-
T Consensus 142 d~v~~s~~~g~~KP~~~~f~~~~~~~g~~p~~~l~VgD~---~~~di~gA~~~G 192 (229)
T COG1011 142 DAVFISEDVGVAKPDPEIFEYALEKLGVPPEEALFVGDS---LENDILGARALG 192 (229)
T ss_pred heEEEecccccCCCCcHHHHHHHHHcCCCcceEEEECCC---hhhhhHHHHhcC
Confidence 356677777778899999999999999854 58888764 366667787763
No 35
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=30.24 E-value=7.9 Score=41.83 Aligned_cols=10 Identities=30% Similarity=0.521 Sum_probs=4.7
Q ss_pred HHHHHHHHHc
Q psy5944 219 KYLENLVEER 228 (309)
Q Consensus 219 k~l~~ll~~~ 228 (309)
..|.++++.+
T Consensus 739 ~~La~~Fk~r 748 (784)
T PF04931_consen 739 EQLAAIFKER 748 (784)
T ss_pred HHHHHHHHHH
Confidence 3444455544
No 36
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=29.27 E-value=2.3e+02 Score=29.34 Aligned_cols=113 Identities=13% Similarity=0.084 Sum_probs=61.8
Q ss_pred ccccCCcccH---HHHHHHHHHHhhhcCCC-e-EEEeccCCCCCCHHHHHHHH-HHcCCCCceEEEecCCccchhHHHHH
Q psy5944 178 LCRILPVMVH---IVVGLTSTLSIKLMQDD-L-HIVKDLVLPVDDPKYLENLV-EERCWGPSVLFVDNTDYMERNISIVT 251 (309)
Q Consensus 178 ~~~klnkKvr---~~lAl~saLS~K~~~~~-L-~VVd~l~l~~~kTk~l~~ll-~~~~~~~svL~V~~~d~~~~nl~~s~ 251 (309)
|+...+||+. +-+.|..-|-.....+. + +.+.++. .-..+.+.| +.+.. ..+-.|.+.|...-.-..++
T Consensus 277 w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I~----~~eq~a~~lk~~~~~-~~i~~Vhs~d~~R~EkV~~f 351 (441)
T COG4098 277 WIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEIE----TMEQVAAALKKKLPK-ETIASVHSEDQHRKEKVEAF 351 (441)
T ss_pred EeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecchH----HHHHHHHHHHhhCCc-cceeeeeccCccHHHHHHHH
Confidence 5555555554 12455555555555444 3 3333332 223333444 22222 24566777664444455667
Q ss_pred hCCCCceEec-----ccc-----hh-hhcCCCcEEEcHHHHHHHHHHHhhhhccCc
Q psy5944 252 DQIKHYNIMP-----AYG-----EN-NMLKHDTLVITVDALKQIEDKLLLALNRSD 296 (309)
Q Consensus 252 rNI~~v~i~~-----~~~-----lN-dlLk~d~lViT~~Al~~Le~~l~~~~~r~~ 296 (309)
||=. .+++- -.| +. -+|.+..=|+|++||=||..|.+.+++|.+
T Consensus 352 R~G~-~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~Pt 406 (441)
T COG4098 352 RDGK-ITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPT 406 (441)
T ss_pred HcCc-eEEEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCC
Confidence 7722 11111 011 11 467778889999999999999999999865
No 37
>PRK07914 hypothetical protein; Reviewed
Probab=28.00 E-value=1.5e+02 Score=28.31 Aligned_cols=92 Identities=9% Similarity=0.085 Sum_probs=53.2
Q ss_pred cCCCeEEEeccCCC-CCCHHHHHHHHHHcCCCCceEEEe-cCCccchhHHHHHhCCCCceEecccch-h---------hh
Q psy5944 201 MQDDLHIVKDLVLP-VDDPKYLENLVEERCWGPSVLFVD-NTDYMERNISIVTDQIKHYNIMPAYGE-N---------NM 268 (309)
Q Consensus 201 ~~~~L~VVd~l~l~-~~kTk~l~~ll~~~~~~~svL~V~-~~d~~~~nl~~s~rNI~~v~i~~~~~l-N---------dl 268 (309)
.+.++++|++.... ....+.+..+++... ...+||+. +++.....+.++.+.. ++.++..+.+ + +.
T Consensus 63 ~~rRlV~v~~~~~~~~~~~~~l~~~l~~~~-~~t~lil~~~~~~~~kk~~K~L~k~-g~~~v~~~~~~~~~~l~~wi~~~ 140 (320)
T PRK07914 63 AEERVVVLEAAAEAGKDAAALILSAAADLP-PGTVLVVVHSGGGRAKALANQLRKL-GAEVHPCARITKAAERADFVRKE 140 (320)
T ss_pred CCceEEEEeChHhccHHHHHHHHHHHhCCC-CCeEEEEEecCCcchhHHHHHHHHC-CCEEEecCCCCCHHHHHHHHHHH
Confidence 45578999875211 112344555555432 22456544 3332344556666655 3334444433 2 56
Q ss_pred cCCCcEEEcHHHHHHHHHHHhhhhcc
Q psy5944 269 LKHDTLVITVDALKQIEDKLLLALNR 294 (309)
Q Consensus 269 Lk~d~lViT~~Al~~Le~~l~~~~~r 294 (309)
++...+-|+.+|+..|-++++..+..
T Consensus 141 a~~~g~~i~~~A~~~L~~~~g~dl~~ 166 (320)
T PRK07914 141 FRSLRVKVDDDTVTALLDAVGSDLRE 166 (320)
T ss_pred HHHcCCCCCHHHHHHHHHHHCccHHH
Confidence 66778889999999999998766554
No 38
>CHL00101 trpG anthranilate synthase component 2
Probab=27.80 E-value=1.1e+02 Score=27.18 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=10.7
Q ss_pred eEEEecCCccchhHHHHHhCC
Q psy5944 234 VLFVDNTDYMERNISIVTDQI 254 (309)
Q Consensus 234 vL~V~~~d~~~~nl~~s~rNI 254 (309)
+||||+.|....|+....+..
T Consensus 2 iliid~~dsft~~l~~~l~~~ 22 (190)
T CHL00101 2 ILIIDNYDSFTYNLVQSLGEL 22 (190)
T ss_pred EEEEECCCchHHHHHHHHHhc
Confidence 455555555555555554444
No 39
>PRK13695 putative NTPase; Provisional
Probab=27.38 E-value=3.1e+02 Score=23.37 Aligned_cols=69 Identities=14% Similarity=0.007 Sum_probs=39.7
Q ss_pred hcCCCeEEEeccCCCCCCHHHHHHHHHH-cCCCCceEEEecCCccchhHHHHHhCCCCceEecccchh-hhc
Q psy5944 200 LMQDDLHIVKDLVLPVDDPKYLENLVEE-RCWGPSVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN-NML 269 (309)
Q Consensus 200 ~~~~~L~VVd~l~l~~~kTk~l~~ll~~-~~~~~svL~V~~~d~~~~nl~~s~rNI~~v~i~~~~~lN-dlL 269 (309)
+...+++++|.+-.....+..+.+.+.. +..+..+++|.+.. ....+..-...++++.+..+...| +.|
T Consensus 94 l~~~~~lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~-~~~~~~~~i~~~~~~~i~~~~~~~r~~~ 164 (174)
T PRK13695 94 LEEADVIIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRR-SVHPFVQEIKSRPGGRVYELTPENRDSL 164 (174)
T ss_pred cCCCCEEEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECch-hhHHHHHHHhccCCcEEEEEcchhhhhH
Confidence 3467899999753222223333333333 34455677776632 122344456677999999988888 543
No 40
>PHA03171 UL37 tegument protein; Provisional
Probab=27.18 E-value=5.7 Score=40.83 Aligned_cols=65 Identities=34% Similarity=0.511 Sum_probs=36.5
Q ss_pred cccCCCCccCCCCcc------cccCCCCCceecCCCcccchhhhHHH--HHHHHHHHHHHHHHHhhhcCCCcc
Q psy5944 113 ERTGRKPWPQKGLIE------RLDGKRRPRLYTGKGEEKEEEEEEEE--EEEEEEEEEEEEEEEITATLNPCG 177 (309)
Q Consensus 113 ~GsGRKpwrQKGTGr------AR~Gs~rsP~~rGGG~af~~~~~~~~--~~~~~~~~~~~~~~~~~gP~~Pr~ 177 (309)
..+..+..+|.|... -|.-+....++-.-|..-++|+-|-| +-|+|+|+||||-|.-+...+|-|
T Consensus 48 ~~~r~rl~rq~gvi~ge~~~~e~~~dl~~al~~~~g~e~~~~~~~~~~~d~~~~~~~~eee~e~~~pevnp~d 120 (499)
T PHA03171 48 QQRRHRLQRQHGVIDGENSETERPRDLTAALFAEAGEEAEEEDNDRECPDTEAEEEDEEEEIEAPDPEVNPLD 120 (499)
T ss_pred HHHHHHHHHhcCcccCCCccccccHHHHHHHHHhhchhhhhcCCcccCCchhhhhhhhhhhccCCCCCCCCcc
Confidence 344456778888753 23333344555444544434444444 566666666677777677666654
No 41
>PF05432 BSP_II: Bone sialoprotein II (BSP-II); InterPro: IPR008412 The major non-collagenous matrix proteins (chondroitin-sulphate glycoproteins decorin and biglycan, sialoproteins osteopontin and bone sialoprotein, osteocalcin and osteonectin) have important roles in formation and organisation of the collagen matrix and nucleation and growth of hydroxyapatite crystals. Bone sialoprotein (BSP) is a major structural protein of the bone matrix that is specifically expressed by fully differentiated osteoblasts [], [] and is highly specific for mineralising tissues. The expression of bone sialoprotein (BSP) is normally restricted to mineralised connective tissues of bones and teeth; it is thought to be responsible for nucleation of hydroxyapatite crystals. BSP also displays a high affinity for calcium ions. The mature protein has a molecular weight of around 33 kDa and consists predominantly of Glu and Gly residues. It is subject to extensive posttranslational modification, and is predominantly phosphorylated at Ser residues. Posttranslational modifications can also cause BSP to act as an inhibitor of hydroxyapatite crystal formation. Ectopic expression of BSP occurs in various lesions, including oral and extraoral carcinomas, in which it has been associated with the formation of microcrystalline deposits and the metastasis of cancer cells to bone []. This entry represents the bone sialoprotein II group of proteins.; GO: 0001503 ossification, 0007155 cell adhesion, 0005576 extracellular region
Probab=26.69 E-value=23 Score=34.64 Aligned_cols=18 Identities=11% Similarity=-0.261 Sum_probs=9.9
Q ss_pred CCCcccccCCCCCceecC
Q psy5944 123 KGLIERLDGKRRPRLYTG 140 (309)
Q Consensus 123 KGTGrAR~Gs~rsP~~rG 140 (309)
.|+|..-.+.++-|+-.|
T Consensus 106 ~g~g~~glaai~~pkK~~ 123 (292)
T PF05432_consen 106 PGTGYIGLAAIQLPKKAG 123 (292)
T ss_pred CCCCcccccccccCcccc
Confidence 355555455666666443
No 42
>KOG4771|consensus
Probab=26.27 E-value=19 Score=33.49 Aligned_cols=46 Identities=17% Similarity=0.257 Sum_probs=24.6
Q ss_pred cccCCCCCceecCCCcccchhhhHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy5944 128 RLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNP 175 (309)
Q Consensus 128 AR~Gs~rsP~~rGGG~af~~~~~~~~~~~~~~~~~~~~~~~~~gP~~P 175 (309)
++.|-+..|.+.|||++.---.-- .|.|++++-++|..++-.|-||
T Consensus 51 k~lGl~a~pn~~~ggVvKriPltK--dEdEdr~~~~~e~d~ln~~iPp 96 (210)
T KOG4771|consen 51 KSLGLIANPNLLGGGVVKRIPLTK--DEDEDRTDHMIEDDSLNVPIPP 96 (210)
T ss_pred HhhceeccCcccccceeeccCCcc--ccccccccchhhhccccCCCCC
Confidence 556777789999999765111111 2222333334445556666533
No 43
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=25.32 E-value=4.4e+02 Score=22.68 Aligned_cols=90 Identities=12% Similarity=0.114 Sum_probs=44.4
Q ss_pred HHHHHHHHHhhhcCCCeEEEeccCCCCCCH--HHHHHHHHHcCCCCceEEEecCC--cc-chhHHHHHhCCC-CceEecc
Q psy5944 189 VVGLTSTLSIKLMQDDLHIVKDLVLPVDDP--KYLENLVEERCWGPSVLFVDNTD--YM-ERNISIVTDQIK-HYNIMPA 262 (309)
Q Consensus 189 ~lAl~saLS~K~~~~~L~VVd~l~l~~~kT--k~l~~ll~~~~~~~svL~V~~~d--~~-~~nl~~s~rNI~-~v~i~~~ 262 (309)
...|.|.++..+..-.++||||-.- +.| ..+.+++...+ ..+-++.... .. ...+..+++... +.+++
T Consensus 15 ~~~l~sl~~q~~~~~eiiVvdd~s~--D~t~~~~i~~~~~~~~--~~i~~i~~~~~~G~~~~a~n~g~~~a~~~~d~i-- 88 (236)
T cd06435 15 KETLDSLAALDYPNFEVIVIDNNTK--DEALWKPVEAHCAQLG--ERFRFFHVEPLPGAKAGALNYALERTAPDAEII-- 88 (236)
T ss_pred HHHHHHHHhCCCCCcEEEEEeCCCC--chhHHHHHHHHHHHhC--CcEEEEEcCCCCCCchHHHHHHHHhcCCCCCEE--
Confidence 4556666666555557999998753 333 34445544322 2333343221 10 122333333332 12333
Q ss_pred cchhhhcCCCcEEEcHHHHHHHHHHHh
Q psy5944 263 YGENNMLKHDTLVITVDALKQIEDKLL 289 (309)
Q Consensus 263 ~~lNdlLk~d~lViT~~Al~~Le~~l~ 289 (309)
-+|.+|. +++.++|..+-..+.
T Consensus 89 ----~~lD~D~-~~~~~~l~~l~~~~~ 110 (236)
T cd06435 89 ----AVIDADY-QVEPDWLKRLVPIFD 110 (236)
T ss_pred ----EEEcCCC-CcCHHHHHHHHHHhc
Confidence 4455663 567777777766553
No 44
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=25.12 E-value=10 Score=41.05 Aligned_cols=7 Identities=29% Similarity=0.420 Sum_probs=2.9
Q ss_pred HHHHHHH
Q psy5944 190 VGLTSTL 196 (309)
Q Consensus 190 lAl~saL 196 (309)
.+|..||
T Consensus 706 ~~l~~aL 712 (784)
T PF04931_consen 706 SALAKAL 712 (784)
T ss_pred HHHHHHh
Confidence 3444444
No 45
>PRK13566 anthranilate synthase; Provisional
Probab=25.05 E-value=75 Score=34.68 Aligned_cols=49 Identities=20% Similarity=0.193 Sum_probs=27.8
Q ss_pred CCCCceEEEecCCccchhHHHHHhCCC-CceEecccc-hh--hhcCCCcEEEc
Q psy5944 229 CWGPSVLFVDNTDYMERNISIVTDQIK-HYNIMPAYG-EN--NMLKHDTLVIT 277 (309)
Q Consensus 229 ~~~~svL~V~~~d~~~~nl~~s~rNI~-~v~i~~~~~-lN--dlLk~d~lViT 277 (309)
+-++++|+|+..|....++....++.. .|.+++.+. .. +.+.+|.|||+
T Consensus 524 ~~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~~~~~~~~~~DgVVLs 576 (720)
T PRK13566 524 GEGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFAEEMLDRVNPDLVVLS 576 (720)
T ss_pred CCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCChhHhhhcCCCEEEEC
Confidence 335678888876655566666666652 233333332 11 44567777875
No 46
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=24.69 E-value=1.3e+02 Score=27.08 Aligned_cols=23 Identities=9% Similarity=0.005 Sum_probs=11.3
Q ss_pred eEEEeccCCCCCCHHHHHHHHHHcCC
Q psy5944 205 LHIVKDLVLPVDDPKYLENLVEERCW 230 (309)
Q Consensus 205 L~VVd~l~l~~~kTk~l~~ll~~~~~ 230 (309)
++|||+-. .=|..+...|+++++
T Consensus 2 il~idn~d---sft~nl~~~l~~~g~ 24 (195)
T PRK07649 2 ILMIDNYD---SFTFNLVQFLGELGQ 24 (195)
T ss_pred EEEEeCCC---ccHHHHHHHHHHCCC
Confidence 34555442 134555566665543
No 47
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=24.28 E-value=14 Score=38.28 Aligned_cols=16 Identities=31% Similarity=0.171 Sum_probs=9.4
Q ss_pred CceEEEecCCccchhH
Q psy5944 232 PSVLFVDNTDYMERNI 247 (309)
Q Consensus 232 ~svL~V~~~d~~~~nl 247 (309)
.|+=||.++-.-++.|
T Consensus 191 DSTDFVCGTLDEDRPL 206 (458)
T PF10446_consen 191 DSTDFVCGTLDEDRPL 206 (458)
T ss_pred CcccccCCCcCCcchH
Confidence 4788998763223433
No 48
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=24.23 E-value=1.4e+02 Score=32.63 Aligned_cols=49 Identities=16% Similarity=0.208 Sum_probs=29.5
Q ss_pred CCCCceEEEecCCccchhHHHHHhCCC-CceEecccchh---hhcCCCcEEEc
Q psy5944 229 CWGPSVLFVDNTDYMERNISIVTDQIK-HYNIMPAYGEN---NMLKHDTLVIT 277 (309)
Q Consensus 229 ~~~~svL~V~~~d~~~~nl~~s~rNI~-~v~i~~~~~lN---dlLk~d~lViT 277 (309)
+.++++||||..+....++....+.+- .+.+++..... +..++|.||++
T Consensus 514 ~~~~~IlVID~gds~~~~l~~~L~~~G~~v~vv~~~~~~~~~~~~~~DgLILs 566 (717)
T TIGR01815 514 GEGRRILLVDHEDSFVHTLANYLRQTGASVTTLRHSHAEAAFDERRPDLVVLS 566 (717)
T ss_pred CCCCEEEEEECCChhHHHHHHHHHHCCCeEEEEECCCChhhhhhcCCCEEEEc
Confidence 345678888876655566777777762 33444433212 33567888885
No 49
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=23.10 E-value=2.1e+02 Score=21.60 Aligned_cols=41 Identities=15% Similarity=0.015 Sum_probs=27.6
Q ss_pred CcccHHHHHHHHHHHhhhcCCCeEEEeccCCCCCCHHHHHHHH
Q psy5944 183 PVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLV 225 (309)
Q Consensus 183 nkKvr~~lAl~saLS~K~~~~~L~VVd~l~l~~~kTk~l~~ll 225 (309)
|....+..++.|++........++||||-+ .+.|.....-+
T Consensus 13 n~~~~l~~~l~s~~~q~~~~~eiivvddgs--~d~t~~~~~~~ 53 (291)
T COG0463 13 NEEEYLPEALESLLNQTYKDFEIIVVDDGS--TDGTTEIAIEY 53 (291)
T ss_pred chhhhHHHHHHHHHhhhhcceEEEEEeCCC--CCChHHHHHHH
Confidence 444555788888888888764699999875 45554444333
No 50
>PRK05670 anthranilate synthase component II; Provisional
Probab=22.74 E-value=1.5e+02 Score=26.09 Aligned_cols=44 Identities=18% Similarity=0.301 Sum_probs=25.7
Q ss_pred eEEEecCCccchhHHHHHhCC-CCceEecccchh----hhcCCCcEEEc
Q psy5944 234 VLFVDNTDYMERNISIVTDQI-KHYNIMPAYGEN----NMLKHDTLVIT 277 (309)
Q Consensus 234 vL~V~~~d~~~~nl~~s~rNI-~~v~i~~~~~lN----dlLk~d~lViT 277 (309)
+||||+.|....++....+.. -.+.+++.+..+ +-+.+|-||++
T Consensus 2 iliid~~d~f~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglIls 50 (189)
T PRK05670 2 ILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIEALNPDAIVLS 50 (189)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEECCCCCHHHHHhCCCCEEEEc
Confidence 567776666666666666665 234555554322 23446777775
No 51
>KOG3062|consensus
Probab=22.43 E-value=90 Score=30.48 Aligned_cols=41 Identities=17% Similarity=0.060 Sum_probs=34.7
Q ss_pred hcCCCccccccCCcccHHHHHHHHHHHhhhcCCCeEEEeccC
Q psy5944 171 ATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLV 212 (309)
Q Consensus 171 gP~~Pr~~~~klnkKvr~~lAl~saLS~K~~~~~L~VVd~l~ 212 (309)
|-..+-+|...-..|.- |-.|+|+..-.+.+++++|||++.
T Consensus 43 g~~~ns~y~~s~~EK~l-Rg~L~S~v~R~Lsk~~iVI~DslN 83 (281)
T KOG3062|consen 43 GIEKNSNYGDSQAEKAL-RGKLRSAVDRSLSKGDIVIVDSLN 83 (281)
T ss_pred CCCCcccccccHHHHHH-HHHHHHHHHhhcccCcEEEEeccc
Confidence 55546678777777887 899999999999999999999985
No 52
>KOG2773|consensus
Probab=22.43 E-value=18 Score=37.71 Aligned_cols=10 Identities=30% Similarity=0.032 Sum_probs=4.6
Q ss_pred HHHHHHHHHH
Q psy5944 278 VDALKQIEDK 287 (309)
Q Consensus 278 ~~Al~~Le~~ 287 (309)
-+++.||+.-
T Consensus 329 ~~i~~Qi~~~ 338 (483)
T KOG2773|consen 329 FSINFQIEHF 338 (483)
T ss_pred chHHHHHHHH
Confidence 4444455443
No 53
>PF03247 Prothymosin: Prothymosin/parathymosin family; InterPro: IPR004931 Prothymosin alpha and parathymosin are two ubiquitous small acidic nuclear proteins that are thought to be involved in cell cycle progression, proliferation, and cell differentiation []. ; PDB: 2Z32_B 2L9I_A.
Probab=21.97 E-value=30 Score=29.44 Aligned_cols=10 Identities=40% Similarity=0.567 Sum_probs=0.0
Q ss_pred HHHHHhhhcC
Q psy5944 164 EEEEEITATL 173 (309)
Q Consensus 164 ~~~~~~~gP~ 173 (309)
+++++..||.
T Consensus 74 dedeE~e~~t 83 (106)
T PF03247_consen 74 DEDEEAEAAT 83 (106)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 3444455554
No 54
>PF03247 Prothymosin: Prothymosin/parathymosin family; InterPro: IPR004931 Prothymosin alpha and parathymosin are two ubiquitous small acidic nuclear proteins that are thought to be involved in cell cycle progression, proliferation, and cell differentiation []. ; PDB: 2Z32_B 2L9I_A.
Probab=21.86 E-value=30 Score=29.42 Aligned_cols=18 Identities=44% Similarity=0.604 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhcC
Q psy5944 156 EEEEEEEEEEEEEITATL 173 (309)
Q Consensus 156 ~~~~~~~~~~~~~~~gP~ 173 (309)
++++.+++++.+..+|-|
T Consensus 69 eeE~~dedeE~e~~t~Kr 86 (106)
T PF03247_consen 69 EEEDGDEDEEAEAATGKR 86 (106)
T ss_dssp ------------------
T ss_pred cccccccccccccccccc
Confidence 334445666677777666
No 55
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=21.71 E-value=1.6e+02 Score=25.92 Aligned_cols=22 Identities=14% Similarity=-0.053 Sum_probs=10.7
Q ss_pred eEEEeccCCCCCCHHHHHHHHHHcC
Q psy5944 205 LHIVKDLVLPVDDPKYLENLVEERC 229 (309)
Q Consensus 205 L~VVd~l~l~~~kTk~l~~ll~~~~ 229 (309)
+++||+... =|..+..+|..++
T Consensus 2 il~id~~ds---f~~nl~~~l~~~~ 23 (191)
T PRK06774 2 LLLIDNYDS---FTYNLYQYFCELG 23 (191)
T ss_pred EEEEECCCc---hHHHHHHHHHHCC
Confidence 344554431 3555556665544
No 56
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=21.11 E-value=2.3e+02 Score=24.75 Aligned_cols=56 Identities=9% Similarity=0.154 Sum_probs=36.3
Q ss_pred cCCcccHHHHHHHHHHHhhhcCCCeEEEeccC--CCCCCHHHHHHHHHHcCCCCceEEEec
Q psy5944 181 ILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCWGPSVLFVDN 239 (309)
Q Consensus 181 klnkKvr~~lAl~saLS~K~~~~~L~VVd~l~--l~~~kTk~l~~ll~~~~~~~svL~V~~ 239 (309)
.|..-++.+++|..||.. +-+++++|+.. ++....+.+.++|..+..+..++++..
T Consensus 125 ~LS~G~~qrv~laral~~---~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th 182 (207)
T cd03369 125 NLSQGQRQLLCLARALLK---RPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAH 182 (207)
T ss_pred cCCHHHHHHHHHHHHHhh---CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeC
Confidence 344434448999999975 44899999863 444445677788887643444555554
No 57
>KOG1834|consensus
Probab=20.73 E-value=18 Score=39.50 Aligned_cols=13 Identities=46% Similarity=0.652 Sum_probs=5.8
Q ss_pred ecCCCcccchhhh
Q psy5944 138 YTGKGEEKEEEEE 150 (309)
Q Consensus 138 ~rGGG~af~~~~~ 150 (309)
+-+||..-|++||
T Consensus 887 ~e~~gs~ee~~e~ 899 (952)
T KOG1834|consen 887 YEKGGSIEEESEE 899 (952)
T ss_pred cccCCcccccccc
Confidence 3445555433333
No 58
>PRK12766 50S ribosomal protein L32e; Provisional
Probab=20.57 E-value=48 Score=31.66 Aligned_cols=12 Identities=17% Similarity=0.360 Sum_probs=6.1
Q ss_pred CCCcccccCCCC
Q psy5944 123 KGLIERLDGKRR 134 (309)
Q Consensus 123 KGTGrAR~Gs~r 134 (309)
+|.|.+.+-.+.
T Consensus 42 ~GIg~k~AekI~ 53 (232)
T PRK12766 42 DGIGNALAARIK 53 (232)
T ss_pred cCCCHHHHHHHH
Confidence 455655544443
No 59
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=20.43 E-value=2.4e+02 Score=23.53 Aligned_cols=87 Identities=15% Similarity=0.171 Sum_probs=39.9
Q ss_pred CeEEEeccCC--CCCCHHHHHHHHHHcCC--CCceEEEecCCccc--hhHHHHHhCCCCceEecccchh---------hh
Q psy5944 204 DLHIVKDLVL--PVDDPKYLENLVEERCW--GPSVLFVDNTDYME--RNISIVTDQIKHYNIMPAYGEN---------NM 268 (309)
Q Consensus 204 ~L~VVd~l~l--~~~kTk~l~~ll~~~~~--~~svL~V~~~d~~~--~nl~~s~rNI~~v~i~~~~~lN---------dl 268 (309)
+|+||.+..+ ...+.+....+.+-+.- ...+||+...+..+ ..+.+.... +..++....++ ..
T Consensus 59 klvii~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~lii~~~~~~~~~~k~~k~l~~--~~~~~~~~~~~~~~~~~~i~~~ 136 (172)
T PF06144_consen 59 KLVIIKNAPFLKDKLKKKEIKALIEYLSNPPPDCILIIFSEEKLDKRKKLYKALKK--QAIVIECKKPKEQELPRWIKER 136 (172)
T ss_dssp EEEEEE-----TT-S-TTHHHHHHHHTTT--SSEEEEEEES-S--HHHHHHHHHTT--TEEEEEE----TTTHHHHHHHH
T ss_pred eEEEEecCccccccccHHHHHHHHHHHhCCCCCEEEEEEeCCchhhhhhHHHHHhc--ccceEEecCCCHHHHHHHHHHH
Confidence 6899988732 22233333344333321 23455555432222 234455544 33333333323 45
Q ss_pred cCCCcEEEcHHHHHHHHHHHhhhh
Q psy5944 269 LKHDTLVITVDALKQIEDKLLLAL 292 (309)
Q Consensus 269 Lk~d~lViT~~Al~~Le~~l~~~~ 292 (309)
++...+-|+.+|++.|-+++...+
T Consensus 137 ~~~~g~~i~~~a~~~L~~~~~~d~ 160 (172)
T PF06144_consen 137 AKKNGLKIDPDAAQYLIERVGNDL 160 (172)
T ss_dssp HHHTT-EE-HHHHHHHHHHHTT-H
T ss_pred HHHcCCCCCHHHHHHHHHHhChHH
Confidence 556788999999999988876543
No 60
>PLN03078 Putative tRNA pseudouridine synthase; Provisional
Probab=20.28 E-value=45 Score=35.17 Aligned_cols=11 Identities=0% Similarity=-0.312 Sum_probs=6.5
Q ss_pred HHHhCCCCcCC
Q psy5944 95 QKKYKWVRFDH 105 (309)
Q Consensus 95 q~a~~Rqgta~ 105 (309)
.....-.|+|.
T Consensus 227 eAl~~fiGtHD 237 (513)
T PLN03078 227 SILNGFEGEHP 237 (513)
T ss_pred HHHHhcccccC
Confidence 44456678763
Done!