Query psy5944
Match_columns 309
No_of_seqs 189 out of 1224
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 22:28:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5944.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5944hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dmg_A Ribosomal protein L4; a 100.0 8.3E-68 2.8E-72 482.4 14.3 203 58-289 2-225 (225)
2 3r8s_E 50S ribosomal protein L 100.0 5.2E-66 1.8E-70 463.9 16.1 189 71-289 11-201 (201)
3 3v2d_F 50S ribosomal protein L 100.0 5.7E-65 2E-69 459.6 18.8 197 57-289 7-207 (210)
4 3bbo_G Ribosomal protein L4; l 100.0 2.2E-65 7.6E-70 481.7 7.9 205 56-291 52-262 (293)
5 2zjr_C 50S ribosomal protein L 100.0 7.5E-65 2.5E-69 457.1 7.7 195 59-290 4-202 (205)
6 2ftc_D Mitochondrial ribosomal 100.0 1.9E-61 6.4E-66 426.1 16.3 172 89-286 1-175 (175)
7 2zkr_c 60S ribosomal protein L 100.0 6.7E-55 2.3E-59 425.5 14.2 216 57-308 6-281 (421)
8 3j21_D 50S ribosomal protein L 100.0 1.6E-54 5.6E-59 401.4 14.8 196 58-288 2-254 (255)
9 4a17_C RPL4, ribosomal protein 100.0 1.2E-53 4E-58 415.6 20.2 217 57-308 5-287 (410)
10 3iz5_D 60S ribosomal protein L 100.0 5.8E-53 2E-57 411.0 13.6 218 56-308 6-286 (405)
11 1vq8_C 50S ribosomal protein L 100.0 1.3E-52 4.4E-57 387.0 14.4 190 58-286 2-245 (246)
12 2wwb_H 60S ribosomal protein L 100.0 8.4E-52 2.9E-56 398.4 9.6 211 58-308 5-278 (362)
13 3cx5_F Cytochrome B-C1 complex 90.1 0.038 1.3E-06 47.7 -1.1 24 150-173 54-77 (146)
14 3bbo_G Ribosomal protein L4; l 69.9 1 3.5E-05 42.6 0.3 16 141-156 260-275 (293)
15 2wwb_H 60S ribosomal protein L 44.5 10 0.00036 36.7 2.4 49 83-131 35-88 (362)
16 1vq8_G Acidic ribosomal protei 42.2 5.3 0.00018 38.3 0.0 6 21-26 144-149 (348)
17 1vq8_C 50S ribosomal protein L 27.2 20 0.00068 32.9 1.2 31 96-129 35-67 (246)
18 1e69_A Chromosome segregation 22.1 1.4E+02 0.0048 26.7 5.8 61 179-239 217-280 (322)
19 3auy_A DNA double-strand break 21.7 1.2E+02 0.0041 27.9 5.4 51 189-239 290-344 (371)
No 1
>1dmg_A Ribosomal protein L4; alpha-beta, ribosome, RNA, S10 operon, gene regulation; HET: CIT; 1.70A {Thermotoga maritima} SCOP: c.22.1.1
Probab=100.00 E-value=8.3e-68 Score=482.38 Aligned_cols=203 Identities=26% Similarity=0.348 Sum_probs=143.1
Q ss_pred eeeccCCCCceeeeEEcCCcccCCCCchhHHHHHHHHHHHhCCCCcCCCceeeeecccCCCCccCCCCcccccCCCCCce
Q psy5944 58 VENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERLDGKRRPRL 137 (309)
Q Consensus 58 v~~v~~~~g~~~g~v~L~p~iF~~~~r~dlIh~~V~~q~a~~Rqgta~tKtraEV~GsGRKpwrQKGTGrAR~Gs~rsP~ 137 (309)
..+|++.+|+.+|+|+|+++||+.++|.||||++|.||++++|||||+||||+||+||||||||||||||||+||+|+|+
T Consensus 2 ~~~v~~~~g~~~g~v~L~~~vF~~~~r~dlih~~v~~~~a~~Rqgt~~tktRaEv~G~GrKp~rQKGTGrAR~Gs~rsP~ 81 (225)
T 1dmg_A 2 QVDLLNVKGEKVGTLEISDFVFNIDPNYDVMWRYVDMQLSNRRAGTASTKTRGEVSGGGRKPWPQKHTGRARHGSIRSPI 81 (225)
T ss_dssp EEEEECTTSCEEEEEECCHHHHSSCCCHHHHHHHHHHHHC----------------------------------------
T ss_pred eeEEEcCCCCEeeEEEcCHHHhCCCccHHHHHHHHHHHHHhccCCccccceeeEeecCCCCCCCCCCCCccccccccCCc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCcccchhhhHHHHHHHHHHHHHHHHHHhhhcCCCccccccCCcccHHHHHHHHHHHhhhcCCCeEEEeccCCCCCC
Q psy5944 138 YTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDD 217 (309)
Q Consensus 138 ~rGGG~af~~~~~~~~~~~~~~~~~~~~~~~~~gP~~Pr~~~~klnkKvr~~lAl~saLS~K~~~~~L~VVd~l~l~~~k 217 (309)
|||||++| ||+ ||+|+++||+|+| ++||+||||+|+.+++|+|||+|.++.+|
T Consensus 82 ~rGGG~~f-------------------------gPk-pR~~~~klnkK~r-rlAl~sALs~k~~~~~LvVvd~~~~~~~K 134 (225)
T 1dmg_A 82 WRHGGVVH-------------------------GPK-PRDWSKKLNKKMK-KLALRSALSVKYRENKLLVLDDLKLERPK 134 (225)
T ss_dssp ---------------------------------------CHHHHHHHHHH-HHHHHHHHHHHHHTTCEEEESCCCCSSCC
T ss_pred eecCceec-------------------------CCc-CccccccCCHHHH-HHHHHHHHHHHHhCCCEEEEeecccCCCC
Confidence 99999999 999 8999999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCC-CceEEEecCCccch---hHHHHHhCCCCceEecccc---------------hh--hhcCCCcEEE
Q psy5944 218 PKYLENLVEERCWG-PSVLFVDNTDYMER---NISIVTDQIKHYNIMPAYG---------------EN--NMLKHDTLVI 276 (309)
Q Consensus 218 Tk~l~~ll~~~~~~-~svL~V~~~d~~~~---nl~~s~rNI~~v~i~~~~~---------------lN--dlLk~d~lVi 276 (309)
||++.++|+.++|+ +++|||++.+ ++ |+.+|+||||+|+++++++ || |||++|+|||
T Consensus 135 TK~~~~~L~~l~~~~~~~LiV~~~~--~~~~~n~~~a~RNip~v~v~~~~~~~~~~~~~~~~~~~~lNv~dll~~~~lv~ 212 (225)
T 1dmg_A 135 TKSLKEILQNLQLSDKKTLIVLPWK--EEGYMNVKLSGRNLPDVKVIIADNPNNSKNGEKAVRIDGLNVFDMLKYDYLVL 212 (225)
T ss_dssp HHHHHHHHHHTTCTTSCEEEEECCC--SHHHHHHHHHHTTCTTEEEEECCCCSSCCSSCCCCCCTTCCHHHHHHSSEEEE
T ss_pred HHHHHHHHHHcCCCCCCEEEEECCC--ccchHHHHHHHhCCCCCEEEecCCcccccccccccCcCcEEHHHHhCCCcEEE
Confidence 99999999999996 7899998653 56 9999999999999999999 99 9999999999
Q ss_pred cHHHHHHHHHHHh
Q psy5944 277 TVDALKQIEDKLL 289 (309)
Q Consensus 277 T~~Al~~Le~~l~ 289 (309)
|++||++||++|.
T Consensus 213 t~~Al~~lee~l~ 225 (225)
T 1dmg_A 213 TRDMVSKIEEVLG 225 (225)
T ss_dssp EHHHHHHHHHHHC
T ss_pred eHHHHHHHHHHhC
Confidence 9999999999873
No 2
>3r8s_E 50S ribosomal protein L4; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_C 1p86_C 1vs8_E 1vs6_E 2aw4_E 2awb_E 1vt2_E 2i2v_E 2j28_E 2i2t_E* 2qao_E* 2qba_E* 2qbc_E* 2qbe_E 2qbg_E 2qbi_E* 2qbk_E* 2qov_E 2qox_E 2qoz_E* ...
Probab=100.00 E-value=5.2e-66 Score=463.91 Aligned_cols=189 Identities=21% Similarity=0.294 Sum_probs=183.9
Q ss_pred eEEcCCcccCCCCchhHHHHHHHHHHHhCCCCcCCCceeeeecccCCCCccCCCCcccccCCCCCceecCCCcccchhhh
Q psy5944 71 FVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEE 150 (309)
Q Consensus 71 ~v~L~p~iF~~~~r~dlIh~~V~~q~a~~Rqgta~tKtraEV~GsGRKpwrQKGTGrAR~Gs~rsP~~rGGG~af~~~~~ 150 (309)
+|+||++||+.++|.||||++|.||++++|||||+||+|+||+||||||||||||||||+||+|||+|||||++|
T Consensus 11 ~i~L~~~vF~~~~r~dlih~~v~~~~a~~Rqgt~~tktraEv~G~grKp~rQKGTGrAR~Gs~rsP~~~gGG~~f----- 85 (201)
T 3r8s_E 11 ALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRARSGSIKSPIWRSGGVTF----- 85 (201)
T ss_dssp CEECCHHHHSSCCCHHHHHHHHHHHHTTSCCCCCCCCBTTTSSCCCCCSSCSSSSSSCCCCCTTCTTSTTCCBTT-----
T ss_pred eEECCHHHhCCCCCHHHHHHHHHHHHHhCcCCCCCCcceeeecCCCCCCCccCCCCccccCcCcCCceeCCEeec-----
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCccccccCCcccHHHHHHHHHHHhhhcCCCeEEEeccCCCCCCHHHHHHHHHHcCC
Q psy5944 151 EEEEEEEEEEEEEEEEEEITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCW 230 (309)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~gP~~Pr~~~~klnkKvr~~lAl~saLS~K~~~~~L~VVd~l~l~~~kTk~l~~ll~~~~~ 230 (309)
||+ ||+|+++||+|+| ++||+||||+|+.+++|+|||++.++.+|||++.++|++++|
T Consensus 86 --------------------gP~-pR~~~~klnkK~r-rlAl~sALs~k~~~~~l~Vvd~~~~~~~KTK~~~~~L~~l~~ 143 (201)
T 3r8s_E 86 --------------------AAR-PQDHSQKVNKKMY-RGALKSILSELVRQDRLIVVEKFSVEAPKTKLLAQKLKDMAL 143 (201)
T ss_dssp --------------------CCC-CCCCCCCCCHHHH-HHHHHHHHHHHHHHTCEEECSCCCCSSSCHHHHHHHHHHHTC
T ss_pred --------------------CCc-cccceeccCHHHH-HHHHHHHHHHHhhcCCEEEeccccccCcCHHHHHHHHHHcCC
Confidence 999 8999999999999 999999999999999999999999999999999999999999
Q ss_pred CCceEEEecCCccchhHHHHHhCCCCceEecccchh--hhcCCCcEEEcHHHHHHHHHHHh
Q psy5944 231 GPSVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLL 289 (309)
Q Consensus 231 ~~svL~V~~~d~~~~nl~~s~rNI~~v~i~~~~~lN--dlLk~d~lViT~~Al~~Le~~l~ 289 (309)
+++|||++. .++|+.+|+||||+|++++++++| |||++++||||++||++||++|.
T Consensus 144 -~~~LiV~~~--~~~~~~~a~RNip~v~v~~~~~lnv~dll~~~~~v~t~~Al~~lee~l~ 201 (201)
T 3r8s_E 144 -EDVLIITGE--LDENLFLAARNLHKVDVRDATGIDPVSLIAFDKVVMTADAVKQVEEMLA 201 (201)
T ss_dssp -SSEEEEESS--CCHHHHHTTSSCSSEEEEEGGGCCHHHHHHSSEEEECHHHHHHHHHHHC
T ss_pred -CceEEEECC--CchHHHHHHhCCCCceEEeeCCCcHHHHhCCCCEEEEHHHHHHHHHHhC
Confidence 489999864 479999999999999999999999 99999999999999999999874
No 3
>3v2d_F 50S ribosomal protein L4; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_F 2hgj_F 2hgu_F 2j03_F 2jl6_F 2jl8_F 2v47_F 2v49_F 2wdi_F 2wdj_F 2wdl_F 2wdn_F 2wh2_F 2wh4_F 2wrj_F 2wrl_F 2wro_F 2wrr_F 2x9s_F 2x9u_F ...
Probab=100.00 E-value=5.7e-65 Score=459.63 Aligned_cols=197 Identities=19% Similarity=0.238 Sum_probs=190.5
Q ss_pred eeeeccCCCCceeeeEEcCCcccCCCCchhHHHHHHHHHHHhCCCCcCCCceeeeecccCCCCccCCCCcccccCCCCCc
Q psy5944 57 WVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERLDGKRRPR 136 (309)
Q Consensus 57 ~v~~v~~~~g~~~g~v~L~p~iF~~~~r~dlIh~~V~~q~a~~Rqgta~tKtraEV~GsGRKpwrQKGTGrAR~Gs~rsP 136 (309)
+..+|+|++|+.+|+|+|++ ++|.||||++|.||++++|||||+||+|+||+||||||||||||||||+||+|||
T Consensus 7 ~~v~V~~~~G~~~g~i~L~~-----~~r~dlih~~v~~~~a~~Rqgt~~tktraEv~G~grKp~rQKGTGrAR~Gs~rsP 81 (210)
T 3v2d_F 7 YQIPVLSPSGRRELAADLPA-----EINPHLLWEVVRWQLAKRRRGTASTKTRGEVAYSGRKIWPQKHTGRARHGDIGAP 81 (210)
T ss_dssp CCCCEECSSSCCCCCCCCCS-----CCCHHHHHHHHHHHHHHTCCCCCCCCCTTTSSCCCCCSSCSSSSSSCCCCCTTST
T ss_pred ceeEEEcCCCCEeeeEecCC-----cccHHHHHHHHHHHHHhccCCccCCCccccccCCCCCCCCCCCCCccCCCcccCC
Confidence 45688999999999999976 9999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCcccchhhhHHHHHHHHHHHHHHHHHHhhhcCCCccccccCCcccHHHHHHHHHHHhhhcCCCeEEEeccCCCCC
Q psy5944 137 LYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVD 216 (309)
Q Consensus 137 ~~rGGG~af~~~~~~~~~~~~~~~~~~~~~~~~~gP~~Pr~~~~klnkKvr~~lAl~saLS~K~~~~~L~VVd~l~l~~~ 216 (309)
+|||||++| ||+ ||+|+++||+|+| ++||+||||+|+.+++|+|||+|.++.+
T Consensus 82 ~~~gGG~~f-------------------------gP~-pR~~~~klnkK~r-rlAl~sALs~k~~~~~l~Vvd~~~~~~~ 134 (210)
T 3v2d_F 82 IFVGGGVVF-------------------------GPK-PRDYSYTLPKKVR-KKGLAMAVADRAREGKLLLVEAFAGVNG 134 (210)
T ss_dssp TSTTCCCSS-------------------------CCC-CCCCCCCCCHHHH-HHHHHHHHHHHHHTTCEEEESCCTTCSS
T ss_pred cccCCeeeC-------------------------CCC-CccceeeCCHHHH-HHHHHHHHHHHHhcCCEEEecccccCCc
Confidence 999999999 999 8999999999999 9999999999999999999999999999
Q ss_pred CHHHHHHHHHHcCC--CCceEEEecCCccchhHHHHHhCCCCceEecccchh--hhcCCCcEEEcHHHHHHHHHHHh
Q psy5944 217 DPKYLENLVEERCW--GPSVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLL 289 (309)
Q Consensus 217 kTk~l~~ll~~~~~--~~svL~V~~~d~~~~nl~~s~rNI~~v~i~~~~~lN--dlLk~d~lViT~~Al~~Le~~l~ 289 (309)
|||++.++|+.+++ ++++|||++ ++|+.+|+||||+|+++++++|| |||++++||||++||++|+++|.
T Consensus 135 KTK~~~~~L~~lg~~~~~~~LiV~~----~~~~~~a~RNip~v~v~~~~~lnv~dll~~~~vv~t~~Al~~l~e~~~ 207 (210)
T 3v2d_F 135 KTKEFLAWAKEAGLDGSESVLLVTG----NELVRRAARNLPWVVTLAPEGLNVYDIVRTERLVMDLDAWEVFQNRIG 207 (210)
T ss_dssp CHHHHHHHHHHTTCCSSSCEEEECS----CHHHHHHHTTCTTEEEECGGGCCHHHHHHSSEEEEEHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHcCCCCCCceEEEeC----ChhHHHHHhCcCCceEEeeCCccHHHHhCCCCEEEEHHHHHHHHHHhc
Confidence 99999999999998 368999997 48999999999999999999999 99999999999999999999986
No 4
>3bbo_G Ribosomal protein L4; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=2.2e-65 Score=481.73 Aligned_cols=205 Identities=15% Similarity=0.135 Sum_probs=195.3
Q ss_pred ceeeeccCCCCceeeeEEcCCcccCCCCchhHHHHHHHHHHHhCCCCcCCCceeeeecccCCCCccCCCCcccccCCCCC
Q psy5944 56 AWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERLDGKRRP 135 (309)
Q Consensus 56 ~~v~~v~~~~g~~~g~v~L~p~iF~~~~r~dlIh~~V~~q~a~~Rqgta~tKtraEV~GsGRKpwrQKGTGrAR~Gs~rs 135 (309)
....+|++.+|+.+|+|+|+++||+.++|.||||++|+||++|+|||||+||+|+||+|+||||||||||||||+|++|+
T Consensus 52 M~~v~V~~~~G~~~g~veLp~~VF~~~~r~dlih~vV~~q~an~RQGTa~tKtRaEV~GgGRKp~RQKGTGRAR~Gs~rs 131 (293)
T 3bbo_G 52 LIPLPILNFSGEKVGETFLNLKTAPPEKARAVVHRGLITHLQNKRRGTASTLTRAEVRGGGRKPYPQKKTGRARRGSQGS 131 (293)
T ss_dssp CEEEECCCSSSCCCSEEEECSSSSSSCCCTTTTTTHHHHHHHHHCCCCCCCCSSTTCSSSCCCCCCCSSSCSCSCCSSSC
T ss_pred CceeEEEcCCCCEeeeEEcCHHHhCCCccHHHHHHHHHHHHHhcccccccCceeeeeccCCCceeccCCCCccccCcccC
Confidence 33689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceecCCCcccchhhhHHHHHHHHHHHHHHHHHHhhhcCCCccccccCCcccHHHHHHHHHHHhhhcCCCeEEEecc--CC
Q psy5944 136 RLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDL--VL 213 (309)
Q Consensus 136 P~~rGGG~af~~~~~~~~~~~~~~~~~~~~~~~~~gP~~Pr~~~~klnkKvr~~lAl~saLS~K~~~~~L~VVd~l--~l 213 (309)
|+|||||++| ||+ ||+|+++||||+| ++||+||||+|+ |+|+|||+| .+
T Consensus 132 P~~rGGGvaf-------------------------GPk-PRdy~~klNKK~r-rlAlrsALSak~--g~LvVvd~~~~~~ 182 (293)
T 3bbo_G 132 PLRPGGGVIF-------------------------GPK-PRDWTIKMNKKER-RLALSTAIASAV--GNSFVVEEFAENF 182 (293)
T ss_dssp SSSSSSCCSS-------------------------CCC-SCCCCCCCCSHHH-HHHHHHHHHHHH--HTTCCCCCCGGGT
T ss_pred CceecCceec-------------------------CCc-CcchhhhcCHHHH-HHHHHHHHHHHc--CCEEEEecccccc
Confidence 9999999999 999 9999999999999 999999999999 889999999 89
Q ss_pred CCCCHHHHHHHHHHcCCC--CceEEEecCCccchhHHHHHhCCCCceEecccchh--hhcCCCcEEEcHHHHHHHHHHHh
Q psy5944 214 PVDDPKYLENLVEERCWG--PSVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLL 289 (309)
Q Consensus 214 ~~~kTk~l~~ll~~~~~~--~svL~V~~~d~~~~nl~~s~rNI~~v~i~~~~~lN--dlLk~d~lViT~~Al~~Le~~l~ 289 (309)
+.+|||++.++|+.++|. +++|||+... ++|+.+|+||||+|+++++++|| |||++|+||||++||++|+++|.
T Consensus 183 ~~~KTK~~~~~Lk~lg~~~~~k~LlV~~~~--d~nl~~A~RNIp~V~v~~v~~LNvydLl~~~~lViT~~Al~~Lee~l~ 260 (293)
T 3bbo_G 183 EKPKTKDFIAAMQRWGLDPAEKSLFFLMDL--VENVEKSGRNIRTLKLLTPRSLNLFDVLNAEKLVFTEGTIQYLNQRYG 260 (293)
T ss_dssp TCCSSHHHHTTHHHHSCSSCSSSCCEECCC--SSSCCTTTSSSSSCEECCSSCCCHHHHHHSSCEECCTTHHHHHHHHSC
T ss_pred cCCCHHHHHHHHHHcCCcccCceEEEEcCC--ChhHHHHHhCCCCcEEEeeCceeHHHhhCCCcEEEEHHHHHHHHHHhc
Confidence 999999999999999984 6788887543 68999999999999999999999 99999999999999999999986
Q ss_pred hh
Q psy5944 290 LA 291 (309)
Q Consensus 290 ~~ 291 (309)
..
T Consensus 261 ~~ 262 (293)
T 3bbo_G 261 VD 262 (293)
T ss_dssp C-
T ss_pred cc
Confidence 54
No 5
>2zjr_C 50S ribosomal protein L4; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.22.1.1 PDB: 1j5a_K* 1jzy_K* 1jzz_K* 1k01_K* 1nkw_C 1sm1_C* 2zjp_C* 2zjq_C 1jzx_K 3cf5_C* 3dll_C* 3pio_C* 3pip_C* 1nwy_C* 1nwx_C* 1xbp_C* 1pnu_C 1pny_C 1vor_F 1vou_F ...
Probab=100.00 E-value=7.5e-65 Score=457.08 Aligned_cols=195 Identities=22% Similarity=0.282 Sum_probs=185.8
Q ss_pred eeccCCCCceeeeEEcCCcccCCCCchhHHHHHHHHHHHhCCCCcCCCceeeeecccCCCCccCCCCcccccCCCCCcee
Q psy5944 59 ENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERLDGKRRPRLY 138 (309)
Q Consensus 59 ~~v~~~~g~~~g~v~L~p~iF~~~~r~dlIh~~V~~q~a~~Rqgta~tKtraEV~GsGRKpwrQKGTGrAR~Gs~rsP~~ 138 (309)
.+|++.+|+.+|+|+||+ +|.||||++|.||++|+|||||+||||+||+||||||||||||||||+||+|+|+|
T Consensus 4 v~v~~~~g~~~g~i~L~~------~r~dlih~~v~~~~a~~Rqgt~~tktraEv~G~GrKp~rQKGTGrAR~Gs~rsP~~ 77 (205)
T 2zjr_C 4 INVIGQNGGRTIELPLPE------VNSGVLHEVVTWQLASRRRGTASTRTRAQVSKTGRKMYGQKGTGNARHGDRSVPTF 77 (205)
T ss_dssp CCCSSCCCCCCCCCCTTT------CCHHHHHHHHHHHHHHHCCCCCCCCCCTTTSCCCSCCSCSSSSSSCCCSCSCSTTS
T ss_pred eEEEcCCCCEeeeEECCC------chHHHHHHHHHHHHHhccccccccceeeeccCCCCCCCCcCCCCCcccCcccCCcc
Confidence 578999999999999977 99999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccchhhhHHHHHHHHHHHHHHHHHHhhhcCCCccccccCCcccHHHHHHHHHHHhhhcCCCeEEEeccCCCCCCH
Q psy5944 139 TGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDP 218 (309)
Q Consensus 139 rGGG~af~~~~~~~~~~~~~~~~~~~~~~~~~gP~~Pr~~~~klnkKvr~~lAl~saLS~K~~~~~L~VVd~l~l~~~kT 218 (309)
||||++| ||+ ||+|+++||+|+| ++||+||||+|+.+++|+|||+|.++.+||
T Consensus 78 ~gGG~~f-------------------------gP~-pR~~~~klnkK~r-rlAl~sALs~k~~~~~lvVvd~~~~~~~KT 130 (205)
T 2zjr_C 78 VGGGVAF-------------------------GPK-PRSYDYTLPRQVR-QLGLAMAIASRQEGGKLVAVDGFDIADAKT 130 (205)
T ss_dssp TTSCCTT-------------------------CCC-CCCCCCCCCHHHH-HHHHHHHHHHHHHTTCCBCSCCTTSCSSCS
T ss_pred cCCeeec-------------------------CCC-CcchhhhcCHHHH-HHHHHHHHHHHhhcCCEEEEeccccCCCCH
Confidence 9999999 999 8999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCC--CceEEEecCCccchhHHHHHhCCCCceEecccchh--hhcCCCcEEEcHHHHHHHHHHHhh
Q psy5944 219 KYLENLVEERCWG--PSVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLLL 290 (309)
Q Consensus 219 k~l~~ll~~~~~~--~svL~V~~~d~~~~nl~~s~rNI~~v~i~~~~~lN--dlLk~d~lViT~~Al~~Le~~l~~ 290 (309)
|++.++|+.++|+ +++|||+ . ++|+.+|+||||+|+++++++|| |||++++||||++||++|+++|..
T Consensus 131 K~~~~~L~~l~~~~~~~~LiV~-~---~~~~~~a~RNip~v~v~~~~~lnv~dll~~~~~v~t~~Al~~lee~~~~ 202 (205)
T 2zjr_C 131 KNFISWAKQNGLDGTEKVLLVT-D---DENTRRAARNVSWVSVLPVAGVNVYDILRHDRLVIDAAALEIVEEEAGE 202 (205)
T ss_dssp HHHHHHHHHTTCCSSSCEEEEC-C---CHHHHTSCCCSSSEEEEGGGCCCHHHHHHSSEEECBCTTTSSCCC----
T ss_pred HHHHHHHHHcCCCcCCCEEEEE-c---CccHHHHHhCCCCceEEeeCceeHHHHhCCCcEEEEHHHHHHHHHHHhh
Confidence 9999999999986 7899998 3 68999999999999999999999 999999999999999999999864
No 6
>2ftc_D Mitochondrial ribosomal protein L4 isoform A, mitochondrial 39S ribosomal protein L3; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_D
Probab=100.00 E-value=1.9e-61 Score=426.10 Aligned_cols=172 Identities=42% Similarity=0.720 Sum_probs=165.9
Q ss_pred HHHHHHHHHhCCCCcCCCceeeeecccCCCCccCCCCcccccCCCCCceecCCCcccchhhhHHHHHHHHHHHHHHHHHH
Q psy5944 89 TMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEE 168 (309)
Q Consensus 89 h~~V~~q~a~~Rqgta~tKtraEV~GsGRKpwrQKGTGrAR~Gs~rsP~~rGGG~af~~~~~~~~~~~~~~~~~~~~~~~ 168 (309)
|++|.||++++|||||+||||+||+||||||||||||||||+||+|||+|||||++|
T Consensus 1 h~~v~~~~a~~Rqgt~~tktraEv~G~grKp~rQKGTGrAR~Gs~rsP~~~gGG~~f----------------------- 57 (175)
T 2ftc_D 1 HQVAMWQKNFKRISYAKTKTRAEVRGGGRKPWPQKGTGRARHGSIRSPLWRGGGVAH----------------------- 57 (175)
T ss_pred CHHHHHHHHHhhcCCCCCcceeeecCCCCCCCCcCCCCccccCCCcCCcccCCEeec-----------------------
Confidence 789999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCccccccCCcccHHHHHHHHHHHhhhcCCCeEEEeccCCCCCCHHHHHHHHHHcCCCCceEEEecC-CccchhH
Q psy5944 169 ITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDNT-DYMERNI 247 (309)
Q Consensus 169 ~~gP~~Pr~~~~klnkKvr~~lAl~saLS~K~~~~~L~VVd~l~l~~~kTk~l~~ll~~~~~~~svL~V~~~-d~~~~nl 247 (309)
||++||+|+++||+|+| ++||+||||+|+.+++|+|||+|.++.+|||++.++|+.++|++++|||++. +..++|+
T Consensus 58 --gP~~pR~~~~klnkK~r-rlAl~sALs~k~~~~~lvVvd~~~~~~~KTK~~~~~l~~l~~~~~~LiV~~~~~~~~~~~ 134 (175)
T 2ftc_D 58 --GPRGPTSYYYMLPMKVR-ALGLKVALTVKLAQDDLHIMDSLELPTGDPQYLTELAHYRRWGDSVLLVDLTHEEMPQSI 134 (175)
T ss_pred --CCCCccchhhhcCHHHH-HHHHHHHHHHhccCCCEEEEecccCCCCCHHHHHHHHHHCCCCCceEEEECCCccCCHHH
Confidence 99988999999999999 9999999999999999999999999999999999999999998889999875 3337899
Q ss_pred HHHHhCCCCceEecccchh--hhcCCCcEEEcHHHHHHHHH
Q psy5944 248 SIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIED 286 (309)
Q Consensus 248 ~~s~rNI~~v~i~~~~~lN--dlLk~d~lViT~~Al~~Le~ 286 (309)
.+|+||||+|+++++++|| |||++++||||++||++||+
T Consensus 135 ~~a~RNip~v~v~~~~~lnv~dll~~~~lv~t~~Al~~lee 175 (175)
T 2ftc_D 135 VEATSRLKTFNLIPAVGLNVHSMLKHQTLVLTLPTVAFLED 175 (175)
T ss_pred HHHHhCCCCcEEEeeCCEeHHHHhCCCCEEEEHHHHHHHhC
Confidence 9999999999999999999 99999999999999999984
No 7
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=6.7e-55 Score=425.49 Aligned_cols=216 Identities=13% Similarity=0.059 Sum_probs=187.7
Q ss_pred eeeeccCCCCceee-eEEcCCcccCCCCchhHHHHHHHHHHHhCCCCcCCC-----ceeeeecccCCCCcc-----CCCC
Q psy5944 57 WVENLDTTEEKHFG-FVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHT-----KVTNEVERTGRKPWP-----QKGL 125 (309)
Q Consensus 57 ~v~~v~~~~g~~~g-~v~L~p~iF~~~~r~dlIh~~V~~q~a~~Rqgta~t-----KtraEV~GsGRKpwr-----QKGT 125 (309)
+..+|++++|+.+| +|+|| +||+.++|.||||++|.||++|+||||+++ |||+||+|||||||| ||||
T Consensus 6 m~v~V~~~~G~~~g~~ieLp-~VF~~piR~dlIh~vV~~~~an~RQgta~t~~AG~KTraEv~G~GRKp~RiPRv~QKGT 84 (421)
T 2zkr_c 6 PLISVYSEKGESSGKNVTLP-AVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGT 84 (421)
T ss_dssp -CCEEECTTSSEEEECSSCC-GGGGSCCCHHHHHHHHHHHHHTTCCCCCCCSCTTTCSCCCCCCSSSSSCCSCCBTTTTB
T ss_pred ceeEEEcCCCCccccEEehh-HhhCCCccHHHHHHHHHHHHHhccCCCCcCcccCCcceeEecCCCCCcCCcccccCCCC
Confidence 45788999999988 89997 999999999999999999999999999999 999999999999999 9999
Q ss_pred cccccCCCCCceecCCCcccchhhhHHHHHHHHHHHHHHHHHHhhhcCCC-ccccccCCcccHHHHHHHHHHHhh-----
Q psy5944 126 IERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNP-CGLCRILPVMVHIVVGLTSTLSIK----- 199 (309)
Q Consensus 126 GrAR~Gs~rsP~~rGGG~af~~~~~~~~~~~~~~~~~~~~~~~~~gP~~P-r~~~~klnkKvr~~lAl~saLS~K----- 199 (309)
||||+|++++ +|| ||++| ||+.| |+|+++||+|+| ++||+||||++
T Consensus 85 GRARqGs~rs-~~R-GGr~f-------------------------gP~kp~R~~~~KlNkK~r-rlAlrSALSaka~~~L 136 (421)
T 2zkr_c 85 HRSGQGAFGN-MCR-GGRMF-------------------------APTKTWRRWHRRVNTTQK-RYAICSALACLSLPAL 136 (421)
T ss_dssp CCCSTTCCTT-STT-CCCCS-------------------------SCCCSSSCCCCCCCHHHH-HHHHHHHHHHHTCHHH
T ss_pred CccCcccccc-ccc-cceee-------------------------CCCCCCcchhhhcCHHHH-HHHHHHHHHhcccchh
Confidence 9999999999 999 99999 99955 999999999999 99999999999
Q ss_pred ----------hcCCCeEEEeccCCCCCCHHHHHHHHHHcCCCC---------------------------ceEEEecCCc
Q psy5944 200 ----------LMQDDLHIVKDLVLPVDDPKYLENLVEERCWGP---------------------------SVLFVDNTDY 242 (309)
Q Consensus 200 ----------~~~~~L~VVd~l~l~~~kTk~l~~ll~~~~~~~---------------------------svL~V~~~d~ 242 (309)
+.+++|+|+|+|. +.+|||++.++|+.+++.. ++|||++.
T Consensus 137 V~aRGH~i~~~~e~~LVVvD~le-~~~KTK~~v~~Lk~lgl~~d~~r~~~sk~iRaGkGKmRgRry~~~kg~LiV~~~-- 213 (421)
T 2zkr_c 137 VMSKGHRIEEVPELPLVVEDKVE-GYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNE-- 213 (421)
T ss_dssp HHHTTCCCCSCSCCSEEECGGGG-GCCCHHHHHHHHHHTTCTHHHHHTTSSCEECSSSTTTTTCCEECCCCCEEEESS--
T ss_pred hhhccccccccccCCEEEEeCCc-cccChHHHHHHHHhcCCCcchhhhhhheecccccccccccccccCcceEEEECC--
Confidence 8899999999998 8999999999999999742 38999875
Q ss_pred cchhHHHHHhCCCCceEecccchh--hhcCCC----cEEEcHHHHHHHHHHHhhhhccCcccccCCcccccC
Q psy5944 243 MERNISIVTDQIKHYNIMPAYGEN--NMLKHD----TLVITVDALKQIEDKLLLALNRSDNERFTSRFVIDT 308 (309)
Q Consensus 243 ~~~nl~~s~rNI~~v~i~~~~~lN--dlLk~d----~lViT~~Al~~Le~~l~~~~~r~~~~~~~~~f~~~~ 308 (309)
++|+.+|+||||+|+++++++|| |||.++ .||||++||++|+++|......|. .|+.|.||.
T Consensus 214 -d~~l~~A~RNIpgV~v~~v~~LNv~dLl~~~h~GR~vV~T~sAle~Lee~~~t~~~~s~---~k~~~~lp~ 281 (421)
T 2zkr_c 214 -DNGIIKAFRKHPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDDLYGTWRKAAS---LKSNYNLPM 281 (421)
T ss_dssp -SSCCCHHHHTSTTCEEEEGGGCCHHHHSGGGCCCCCEEEEHHHHHHHTTC---------------------
T ss_pred -ChhHHHHHhCCCCcEEEeeCCccHHHHhcCCCCCcEEEEEhHHHHHHHHHHhccccccc---cccCCcCCc
Confidence 57899999999999999999999 999999 999999999999999988877663 589999985
No 8
>3j21_D 50S ribosomal protein L4P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.6e-54 Score=401.38 Aligned_cols=196 Identities=14% Similarity=0.047 Sum_probs=183.1
Q ss_pred eeeccCCCCceeeeEEcCCcccCCCCchhHHHHHHHHHHHhCCC--CcCC---CceeeeecccCCC---CccCCCC-ccc
Q psy5944 58 VENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWV--RFDH---TKVTNEVERTGRK---PWPQKGL-IER 128 (309)
Q Consensus 58 v~~v~~~~g~~~g~v~L~p~iF~~~~r~dlIh~~V~~q~a~~Rq--gta~---tKtraEV~GsGRK---pwrQKGT-GrA 128 (309)
..+|+|++|+.+|+|+|| +||+.++|.||||++|.||++|+|| ||+. ||||+||+|+||| ||||||| |||
T Consensus 2 ~v~V~~~~G~~~g~v~Lp-~vF~~~~r~dli~~~v~~~~an~Rq~~Gt~~~ag~ktraev~G~Gr~~ar~~RqKGtgGrA 80 (255)
T 3j21_D 2 KVKVFDLNGQPVGEIELP-KVFFTPFRPDLIRRAVIASWTHRIQPQGRDPMAGKRRVTENIGKGHSMARVERLKTPPRYA 80 (255)
T ss_dssp EEEEECTTSCEEEEEECC-GGGGSCCCHHHHHHHHHHHHHHTCCCCCCCSSTTSSSCCBCCCSSSSSCCCCBCSSSCCCC
T ss_pred eeEEEcCCCCEeeEEEhH-HhhCCCCcHHHHHHHHHHHHHhccccccCCcccCcccceeecCCCCCcCcCCccCCCCCcc
Confidence 468899999999999997 8999999999999999999999999 7876 8999999999995 9999999 999
Q ss_pred ccCCCCCceecCCCcccchhhhHHHHHHHHHHHHHHHHHHhhhcCCCccccccCCcccHHHHHHHHHHHhhhcCC-----
Q psy5944 129 LDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQD----- 203 (309)
Q Consensus 129 R~Gs~rsP~~rGGG~af~~~~~~~~~~~~~~~~~~~~~~~~~gP~~Pr~~~~klnkKvr~~lAl~saLS~K~~~~----- 203 (309)
| ++|+|||||++| ||+++|+|+++||+|+| ++||+||||+++.++
T Consensus 81 r----rsP~~rGGg~~~-------------------------gPkp~R~~~~klNkK~r-rlAl~sALsa~~~~~lv~~r 130 (255)
T 3j21_D 81 A----FVPFARGGRRTH-------------------------PPKVEKIIWEDINKKEK-RLALMSAIAATANYDLVRAR 130 (255)
T ss_dssp S----SCSSSTTCCCSS-------------------------CCCTTSCCCCCCCHHHH-HHHHHHHHHHTTCHHHHHHH
T ss_pred c----cCccccCCeeec-------------------------CCCCCcccceecCHHHH-HHHHHHHHHHHhhcccchhc
Confidence 8 999999999999 99944999999999999 999999999999977
Q ss_pred ----------CeEEEeccCCCCCCHHHHHHHHHHcCCC---------------------------CceEEEecCCccchh
Q psy5944 204 ----------DLHIVKDLVLPVDDPKYLENLVEERCWG---------------------------PSVLFVDNTDYMERN 246 (309)
Q Consensus 204 ----------~L~VVd~l~l~~~kTk~l~~ll~~~~~~---------------------------~svL~V~~~d~~~~n 246 (309)
+|+|+|+|. ..+|||++.++|+.+++. +++|||++.+ +.
T Consensus 131 gh~~~~~~~~~lvVvd~~~-~~~KTK~~~~~L~~lg~~~dv~r~~~~~~~ragkgk~r~rr~~~~~~~LiV~~~~--~~- 206 (255)
T 3j21_D 131 GHIIDNVPQLPLIVVDDLQ-KVQKTRETREIFKKLGIWDDIVRAKEKSGVRAGKGKMRGRRYKKAKGPLIVVGKN--EG- 206 (255)
T ss_dssp TCCCSCTTCSSEEECGGGG-TCCCHHHHHHHHHHHTCTHHHHHHTSCCCSCSSGGGGGSCCSCCCCCCEEEESSS--SS-
T ss_pred ccccccccceeEEEEeCCc-CCCChHHHHHHHHHcCChhhhHHhhccceecccccccccccccCCCceEEEECCC--cH-
Confidence 799999997 578999999999999983 6899999764 34
Q ss_pred HHHHHhCCCCceEecccchh--hhcCCC----cEEEcHHHHHHHHHHH
Q psy5944 247 ISIVTDQIKHYNIMPAYGEN--NMLKHD----TLVITVDALKQIEDKL 288 (309)
Q Consensus 247 l~~s~rNI~~v~i~~~~~lN--dlLk~d----~lViT~~Al~~Le~~l 288 (309)
+.+|+||||+|+++++++|| |||.++ .||||++||++|+++|
T Consensus 207 ~~~a~RNip~V~v~~~~~LNv~~Ll~~~~~gr~~V~T~~A~~~lee~~ 254 (255)
T 3j21_D 207 IVLGARNHPGVDVVVVDNLGVEHLAPGTHPGRLTVWTVSAIERLRELY 254 (255)
T ss_dssp SCSSSSSSTTCEEEETTTCCHHHHSTTSCCCCCEEEEHHHHHHHHSCC
T ss_pred HHHHHhCCCCcEEEecCCccHHHHhCCCCCCceEEEEHHHHHHHHHHh
Confidence 99999999999999999999 999998 8999999999999876
No 9
>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_C 4a1c_C 4a1e_C
Probab=100.00 E-value=1.2e-53 Score=415.62 Aligned_cols=217 Identities=13% Similarity=0.058 Sum_probs=199.1
Q ss_pred eeeecc-CCCCcee-ee-EEcCCcccCCCCchhHHHHHHHHHHHhCCC---------CcCCCceeeeecccCCCCcc---
Q psy5944 57 WVENLD-TTEEKHF-GF-VNLHPDIFGLVPRLDVITMNIEWQKKYKWV---------RFDHTKVTNEVERTGRKPWP--- 121 (309)
Q Consensus 57 ~v~~v~-~~~g~~~-g~-v~L~p~iF~~~~r~dlIh~~V~~q~a~~Rq---------gta~tKtraEV~GsGRKpwr--- 121 (309)
+..+|+ +++|+.+ |+ |+| |+||+.++|.||||++|.||++|+|| |||++|||+||||+||||||
T Consensus 5 p~v~V~~~~~G~~~~g~~veL-p~VF~~~ir~dlIh~vV~~~~anrRQ~~~~~~~~rGTa~tktraEv~GtGRk~~RiPR 83 (410)
T 4a17_C 5 PQIHVHDAKEANKQTATKLTL-PAVFTAPIRTDIVHKVFTDLNKNRKQASGVKISTRGTAGMGHSAESWGTGRAVARIPR 83 (410)
T ss_dssp CEEEEEESSSTTEEEEEEEEC-CGGGGSCCCHHHHHHHHHHHHHTTCCCCCCCBCSSCBTTCCSCEEECCGGGSSCSSEE
T ss_pred CeeEEEECCCCCccCCceEeh-hHhhCCCCcHHHHHHHHHHHHHhCcCcccCCCcccccccCCccceeCCCCCCcccccc
Confidence 357889 8999995 78 999 78999999999999999999999999 88999999999999999999
Q ss_pred --CCCCcccccCCCCCceecCCCcccchhhhHHHHHHHHHHHHHHHHHHhhhcCC-CccccccCCcccHHHHHHHHHHHh
Q psy5944 122 --QKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLN-PCGLCRILPVMVHIVVGLTSTLSI 198 (309)
Q Consensus 122 --QKGTGrAR~Gs~rsP~~rGGG~af~~~~~~~~~~~~~~~~~~~~~~~~~gP~~-Pr~~~~klnkKvr~~lAl~saLS~ 198 (309)
||||||||+|+++ |+|+ ||++| ||++ ||+|+++||+|+| ++||+||||+
T Consensus 84 ~~QKGTGRARqGs~r-P~~r-GGr~f-------------------------gP~p~~R~y~~KlNKK~r-rlAlrSALSa 135 (410)
T 4a17_C 84 VGGSGTHRSGQAAFG-NQCR-KGRMF-------------------------APLKTYRRVHRRVNVNQK-RHAVAAALAA 135 (410)
T ss_dssp ECCSSSTTTTCBCSS-TTSS-SCCCS-------------------------SCCCSCCCCCCCCCHHHH-HHHHHHHHHH
T ss_pred ccCCCCCcccccccC-CccC-CeEEc-------------------------CCCCCccchhhhhCHHHH-HHHHHHHHHH
Confidence 9999999999999 9888 99999 9995 3999999999999 9999999999
Q ss_pred hhc---------------CCCeEEEeccCCCCCCHHHHHHHHHHcCCC---------------------------CceEE
Q psy5944 199 KLM---------------QDDLHIVKDLVLPVDDPKYLENLVEERCWG---------------------------PSVLF 236 (309)
Q Consensus 199 K~~---------------~~~L~VVd~l~l~~~kTk~l~~ll~~~~~~---------------------------~svL~ 236 (309)
++. +++|+|+|++. ..+|||.+.++|+.+++. +++||
T Consensus 136 ka~~~lV~aRgh~i~~v~e~~LVV~D~~e-~~~KTK~~v~~Lk~lg~~~dv~r~~~~k~iRaGkGKmRgRry~~~k~~LI 214 (410)
T 4a17_C 136 SALVPLVFARGHRISNVQELPYVFDDSVE-SYEKTKQAVAFLKRVGAYDDVLRVAETKALRAGQGKLRNRRYKLRRGPLV 214 (410)
T ss_dssp HTCHHHHHHTTCCCTTCCSSSEEECTTGG-GCCSHHHHHHHHHHHTTHHHHHHHHHCEEECCGGGGGGTCCEEECCCCEE
T ss_pred hcchhhhhhccccccccCcCCEEEEecCc-CCCCHHHHHHHHHHcCCcchhhhhhcccceeccccccccccccCCCceEE
Confidence 974 77889989987 568999999999999973 37999
Q ss_pred EecCCccchhHHHHHhCCCCceEecccchh--hhcCCC----cEEEcHHHHHHHHHHHhhhhccCcccccCCcccccC
Q psy5944 237 VDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHD----TLVITVDALKQIEDKLLLALNRSDNERFTSRFVIDT 308 (309)
Q Consensus 237 V~~~d~~~~nl~~s~rNI~~v~i~~~~~lN--dlLk~d----~lViT~~Al~~Le~~l~~~~~r~~~~~~~~~f~~~~ 308 (309)
|++.. +.|+.+|+||||+|+++++++|| |||.++ .||||++||+.|+++|......|. .|+.|.||.
T Consensus 215 V~~~~--d~~l~~A~RNIpgV~v~~v~~LNv~dLl~~~~~gR~vV~TksAl~~Lee~~~~~~~~s~---~k~~~~lp~ 287 (410)
T 4a17_C 215 VYGNE--KSTLTRALRNIPGVDVCNVNRLNLLQLAPGGHVGRFIIWTESAFKKLNEIFGTYSTTGV---QKSGYQLQR 287 (410)
T ss_dssp EECCT--TCSHHHHHTTSTTCEEEETTSCCHHHHSGGGCCCCCEEECHHHHHHHHHHHCBTTBCCT---TTTSCCCCC
T ss_pred EECCC--chHHHHHHhCCCCcEEEEeCCccHHHHhCCCCCCceEEEEHHHHHHHHHHHccccchhh---hccCCcCCc
Confidence 99543 68999999999999999999999 999988 889999999999999998877774 789999985
No 10
>3iz5_D 60S ribosomal protein L4 (L4P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_D
Probab=100.00 E-value=5.8e-53 Score=410.99 Aligned_cols=218 Identities=15% Similarity=0.080 Sum_probs=182.8
Q ss_pred ceeeeccCCCCceee----eEEcCCcccCCCCchhHHHHHHHHHHHhCCCCcCCCc-----eeeeecccCCCCc---cCC
Q psy5944 56 AWVENLDTTEEKHFG----FVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTK-----VTNEVERTGRKPW---PQK 123 (309)
Q Consensus 56 ~~v~~v~~~~g~~~g----~v~L~p~iF~~~~r~dlIh~~V~~q~a~~Rqgta~tK-----traEV~GsGRKpw---rQK 123 (309)
-+..+|++++|+.+| +|+| |+||+.++|.||||++|.||++++|||||++| ||+||+|+||||| |||
T Consensus 6 rp~v~V~~~~G~~~g~~~~~v~L-p~VF~~~~r~dlIh~vV~~~~an~RQgt~~tk~AG~~traEv~GtGRk~~RipRQK 84 (405)
T 3iz5_D 6 RPLVSVKALEGDMATDNSSSLAL-AEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVP 84 (405)
T ss_dssp CCEECCBCCSCCCCSSCCCCEEC-CGGGGSCCCHHHHHHHHHHHHHTCSCCCCSCTTTTTCSCCCCCCSSSSSCSSCCCC
T ss_pred CceEEEEeCCCCcccccceeecc-HHHhCCCCCHHHHHHHHHHHHHhhhcCcCCCccccCCccceecCCCCCcccccccc
Confidence 346789999999999 7999 79999999999999999999999999999999 9999999999999 999
Q ss_pred --CCcccccCCCCCceecCCCcccchhhhHHHHHHHHHHHHHHHHHHhhhcCC-CccccccCCcccHHHHHHHHHHHhhh
Q psy5944 124 --GLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLN-PCGLCRILPVMVHIVVGLTSTLSIKL 200 (309)
Q Consensus 124 --GTGrAR~Gs~rsP~~rGGG~af~~~~~~~~~~~~~~~~~~~~~~~~~gP~~-Pr~~~~klnkKvr~~lAl~saLS~K~ 200 (309)
||||||+|++ |+|+|||++| ||++ ||+|+++||+|+| ++||+||||+++
T Consensus 85 G~GTgRAr~gs~--~~~~gGGr~f-------------------------gP~p~~R~y~~klNKK~r-rlAlrSALSaka 136 (405)
T 3iz5_D 85 GGGTHRAGQGAF--GNMCRGGRMF-------------------------APTKTWRKWHRRVNVHLR-RVAVASALAATS 136 (405)
T ss_dssp CCSSSCCCSCCS--SSSSTTCCCS-------------------------SSCCSCCCCCCCCCHHHH-HHHHHHHHHHTT
T ss_pred CCCCCccCCCCC--CCccCCeEEc-------------------------CCCCCCccceeecCHHHH-HHHHHHHHHHhc
Confidence 6667777776 7899999999 9995 3999999999999 999999999997
Q ss_pred c---------------CCCeEEEeccCCCCCCHHHHHHHHHHcCCC---------------------------CceEEEe
Q psy5944 201 M---------------QDDLHIVKDLVLPVDDPKYLENLVEERCWG---------------------------PSVLFVD 238 (309)
Q Consensus 201 ~---------------~~~L~VVd~l~l~~~kTk~l~~ll~~~~~~---------------------------~svL~V~ 238 (309)
. ++.|+|+|++. +.+|||++.++|+.+++. +++|||+
T Consensus 137 ~~~lV~aRghri~~v~e~~LVV~D~~~-~~~KTK~~v~~Lk~lg~~~d~~k~~~~~~iRaGkGKmRgRry~~~k~~LIV~ 215 (405)
T 3iz5_D 137 VPSLVLARGHRIETVPELPLVISDSAE-SIEKTSQAIKILKQVGAYADAEKAKDSVGIRPGKGKMRNRRYINRKGPLIVY 215 (405)
T ss_dssp CHHHHHHHTCCCCCCSSSSEEECTTSS-SCCCHHHHHHHHHHHTCHHHHHTTSSCCEECCSGGGGTTCSEECCCCCEEEE
T ss_pred chhhhhhccccccccccCCEEEEecCc-ccCChHHHHHHHHHcCCccccchhhccccccccccccccccccccCceEEEE
Confidence 5 66777777675 789999999999999874 3699999
Q ss_pred cCCccchhHHHHHhCCCCceEecccchh--hhcCCCc----EEEcHHHHHHHHHHHhhhhccCcccccCCcccccC
Q psy5944 239 NTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDT----LVITVDALKQIEDKLLLALNRSDNERFTSRFVIDT 308 (309)
Q Consensus 239 ~~d~~~~nl~~s~rNI~~v~i~~~~~lN--dlLk~d~----lViT~~Al~~Le~~l~~~~~r~~~~~~~~~f~~~~ 308 (309)
+.. +.|+.+|+||||+|+++++++|| |||.++. ||||++||+.|+++|.....-|. .|+.|.||.
T Consensus 216 ~~~--d~~l~~A~RNIpgV~v~~v~~LNv~dLl~~~~~gr~vV~T~sAl~~Lee~~~~~~~~s~---~k~~~~lp~ 286 (405)
T 3iz5_D 216 GTE--GSKIVKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTESAFKKLEEVYGTFEAPSL---KKKGFILPR 286 (405)
T ss_dssp CCT--TTCCCHHHHTSTTCEEEEGGGCCHHHHSGGGCCCCCEEEEHHHHTTSTTCC--------------------
T ss_pred CCC--chHHHHHHhCCCCcEEEecCCccHHHHhcCCCCCceEEEEHHHHHHHHHHHccccchhh---hccCCcCCc
Confidence 643 78999999999999999999999 9999986 99999999999999998887774 789999984
No 11
>1vq8_C 50S ribosomal protein L4E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.22.1.1 PDB: 1k73_E* 1k8a_E* 1k9m_E* 1kc8_E* 1kd1_E* 1kqs_C* 1m1k_E* 1m90_E* 1n8r_E* 1nji_E* 1q7y_E* 1q81_E* 1q82_E* 1q86_E* 1qvf_C 1qvg_C 1s72_C* 1vq4_C* 1vq5_C* 1vq6_C* ...
Probab=100.00 E-value=1.3e-52 Score=387.03 Aligned_cols=190 Identities=16% Similarity=0.116 Sum_probs=179.0
Q ss_pred eeeccCCCCceeeeEEcCCcccCCCCchhHHHHHHHHHHHhCCCCcCC-----CceeeeecccCCCC---ccCCCCcccc
Q psy5944 58 VENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDH-----TKVTNEVERTGRKP---WPQKGLIERL 129 (309)
Q Consensus 58 v~~v~~~~g~~~g~v~L~p~iF~~~~r~dlIh~~V~~q~a~~Rqgta~-----tKtraEV~GsGRKp---wrQKGTGrAR 129 (309)
..+|++.+|+..|+|+|| +||+.++|.||||++|.||++|+|||||+ +||++||+|+|||| |||| |+||
T Consensus 2 ~v~v~~~~g~~~g~v~Lp-~vF~~~~r~dli~~~v~~~~an~Rqgt~~~~~aG~kt~ae~~GtGR~~ari~rqK--G~ar 78 (246)
T 1vq8_C 2 QATIYDLDGNTDGEVDLP-DVFETPVRSDLIGKAVRAAQANRKQDYGSDEYAGLRTPAESFGSGRGQAHVPKLD--GRAR 78 (246)
T ss_dssp EEEEECTTSCEEEEEECC-GGGGSCCCHHHHHHHHHHHHHHTCCCCCCCTTTTTCCCCBCCCSSSSCCCCCEET--TEEC
T ss_pred eeEEEcCCCCCccEEEhh-HhhCCCccHHHHHHHHHHHHHhcccCcccccccCcccceeeccCCCCcccccccc--Cccc
Confidence 367899999999999998 99999999999999999999999999998 99999999999999 9999 7775
Q ss_pred cCCCCCceecCCCcccchhhhHHHHHHHHHHHHHHHHHHhhhcCCCccccccCCcccHHHHHHHHHHHhhhc--------
Q psy5944 130 DGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRILPVMVHIVVGLTSTLSIKLM-------- 201 (309)
Q Consensus 130 ~Gs~rsP~~rGGG~af~~~~~~~~~~~~~~~~~~~~~~~~~gP~~Pr~~~~klnkKvr~~lAl~saLS~K~~-------- 201 (309)
++|+|||||++| ||++||+|+++||+|+| ++||+||||+++.
T Consensus 79 ----rsP~~rGGg~~~-------------------------gPkp~R~~~~klnkK~r-rlAl~sALsa~~~~~lv~~rG 128 (246)
T 1vq8_C 79 ----RVPQAVKGRSAH-------------------------PPKTEKDRSLDLNDKER-QLAVRSALAATADADLVADRG 128 (246)
T ss_dssp ----SSTTSTTCCCSS-------------------------CCCTTCCCCCCCCHHHH-HHHHHHHHHHTTCHHHHHHHT
T ss_pred ----cCCccCCCeeec-------------------------CCCCCccchhhcCHHHH-HHHHHHHHHHhhhhhhhhhcc
Confidence 899999999999 99955999999999999 9999999999997
Q ss_pred ------CCCeEEEeccCCCCCCHHHHHHHHHHcCCC--------------------------CceEEEecCCccchhHHH
Q psy5944 202 ------QDDLHIVKDLVLPVDDPKYLENLVEERCWG--------------------------PSVLFVDNTDYMERNISI 249 (309)
Q Consensus 202 ------~~~L~VVd~l~l~~~kTk~l~~ll~~~~~~--------------------------~svL~V~~~d~~~~nl~~ 249 (309)
+++|+|+|+|. +.+|||++.++|+++++. +++|||++. + +.+
T Consensus 129 h~~~~~e~~lvVvd~~~-~~~KTK~~~~~L~~lg~~~dv~r~~~~~iragkgk~r~rr~~~~~~~LiV~~~---~--~~~ 202 (246)
T 1vq8_C 129 HEFDRDEVPVVVSDDFE-DLVKTQEVVSLLEALDVHADIDRADETKIKAGQGSARGRKYRRPASILFVTSD---E--PST 202 (246)
T ss_dssp CCCCCSSCSEEECGGGG-GCCCHHHHHHHHHHTTCTHHHHHSSCCEECSSGGGGGTCCEECCCCCEEEESS---S--CCT
T ss_pred cccccccccEEEEeCcc-cCCCHHHHHHHHHhcCCcchhhhhhhhhcccccccccccccccCCcEEEEECc---H--HHH
Confidence 68999999999 899999999999999985 489999873 2 899
Q ss_pred HHhCCCCceEecccchh--hhcCCCc----EEEcHHHHHHHHH
Q psy5944 250 VTDQIKHYNIMPAYGEN--NMLKHDT----LVITVDALKQIED 286 (309)
Q Consensus 250 s~rNI~~v~i~~~~~lN--dlLk~d~----lViT~~Al~~Le~ 286 (309)
|+||||+|+++++++|| |||+++. ||||++||++|++
T Consensus 203 a~RNip~V~v~~~~~lnv~dll~~~~~gr~~v~T~~Al~~l~e 245 (246)
T 1vq8_C 203 AARNLAGADVATASEVNTEDLAPGGAPGRLTVFTESALAEVAE 245 (246)
T ss_dssp TTTTSTTCEEEETTTCCHHHHSGGGCCCCCEEEEHHHHHHGGG
T ss_pred HHcCCCCcEEEeeCCeeHHHHhccCCCCCeEEEEHHHHHHHhh
Confidence 99999999999999999 9999955 9999999999986
No 12
>2wwb_H 60S ribosomal protein L4-B; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Triticum aestivum} PDB: 2wwa_H 2ww9_H 3izc_D 3izs_D 3o58_D 3o5h_D 3u5e_C 3u5i_C 1s1i_D 3jyw_D
Probab=100.00 E-value=8.4e-52 Score=398.36 Aligned_cols=211 Identities=11% Similarity=0.072 Sum_probs=189.4
Q ss_pred eeeccCCCCceeee-EEcCCcccCCCCchhHHHHHHHHHHHhCCCCcCCCceeeeecccCCCCccCCCCccccc------
Q psy5944 58 VENLDTTEEKHFGF-VNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERLD------ 130 (309)
Q Consensus 58 v~~v~~~~g~~~g~-v~L~p~iF~~~~r~dlIh~~V~~q~a~~Rqgta~tKtraEV~GsGRKpwrQKGTGrAR~------ 130 (309)
..+|++++|+.+|+ |+|| +||+.++|.||||++|.||++|+||||+++|+|+|| +|+||| ||||||+
T Consensus 5 ~v~V~~~~G~~~g~~i~Lp-~VF~~p~r~dlih~vv~~~~an~RQgt~~tk~rgev--tg~K~w---GTGRAraripRv~ 78 (362)
T 2wwb_H 5 QVTVHSLTGEATANALPLP-AVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQ--TSAESW---GTGRAVARIPRVG 78 (362)
T ss_dssp CCCCCCSSCSCCSCCCCCC-GGGCSCCCHHHHHHHHHHHHHHHCCCCCCCSSSSCS--SCCSSC---CCCSSSCSCSCCC
T ss_pred eeEEEcCCCcCcCceEehh-HhhCCCccHHHHHHHHHHHHHhccCCCCCCCccccc--ccceec---CCCCCeeeccccc
Confidence 35789999999998 9998 999999999999999999999999999999999999 889999 9999999
Q ss_pred --CCCCCce-----ecCCCcccchhhhHHHHHHHHHHHHHHHHHHhhhcCCC-ccccccCCcccHHHHHHHHHHHhh---
Q psy5944 131 --GKRRPRL-----YTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNP-CGLCRILPVMVHIVVGLTSTLSIK--- 199 (309)
Q Consensus 131 --Gs~rsP~-----~rGGG~af~~~~~~~~~~~~~~~~~~~~~~~~~gP~~P-r~~~~klnkKvr~~lAl~saLS~K--- 199 (309)
|++|||+ |+|||++| ||+++ |+|+++||+|+| ++||+||||++
T Consensus 79 g~Gs~RSp~ga~~~~~gGG~~f-------------------------gP~p~~R~~~~klNkK~r-rlAl~SALsaka~~ 132 (362)
T 2wwb_H 79 GGGTGRSGQGAFGNMCRGGRMF-------------------------APTKTWRKWNVKVNHNEK-RYATASAIAATAVA 132 (362)
T ss_dssp SCSSSSCSSTTTSSSCSSSCCS-------------------------SSSCSSCCCCCCCCHHHH-HHHHHHHHHGGGCS
T ss_pred CCCCCCCcccccCCccCCeEEC-------------------------CCCCCCcchhhhcCHHHH-HHHHHHHHHhccch
Confidence 9999999 99999999 99943 999999999999 99999999999
Q ss_pred ------------hcCCCeEEEeccCCCCCCHHHHHHHHHHcCCC-C--------------------------ceEEEecC
Q psy5944 200 ------------LMQDDLHIVKDLVLPVDDPKYLENLVEERCWG-P--------------------------SVLFVDNT 240 (309)
Q Consensus 200 ------------~~~~~L~VVd~l~l~~~kTk~l~~ll~~~~~~-~--------------------------svL~V~~~ 240 (309)
+.+++|+|+|+| ++.+|||++.++|+.+++. . ++|||++.
T Consensus 133 ~lv~arGH~i~~~~e~~LvVvd~~-~~~~KTK~~~~~Lk~lg~~~d~~r~~~~~~iRaGkGKmRgRry~~~k~~LiV~~~ 211 (362)
T 2wwb_H 133 SLVLARGHRVEKIPEIPLVVSTDL-ESIQKTKEAVAALKAVGAHSDLLKVLKSKKLRAGKGKYRNRRWTQRRGPLVVYAE 211 (362)
T ss_dssp THHHHHTCCCCSCSSCSBCCCGGG-GTCCCHHHHHHHHHHHSCSHHHHHHTSTTSCCCCGGGTTSCCSCCCCCCEEEESS
T ss_pred hhhhhccccccccccCcEEEEecc-cccCCHHHHHHHHHhcCCCcchhhhhhhhhcccccccccccccccCCceEEEEcC
Confidence 899999999999 8999999999999999974 2 58999964
Q ss_pred CccchhHHHHHhCCCCceEecccchh--hhcCCC----cEEEcHHHHHHHHHHHhhhhccCcccccCCcccccC
Q psy5944 241 DYMERNISIVTDQIKHYNIMPAYGEN--NMLKHD----TLVITVDALKQIEDKLLLALNRSDNERFTSRFVIDT 308 (309)
Q Consensus 241 d~~~~nl~~s~rNI~~v~i~~~~~lN--dlLk~d----~lViT~~Al~~Le~~l~~~~~r~~~~~~~~~f~~~~ 308 (309)
++|+.+|+||||+|+++++++|| |||.++ .||||++||++|+++|.. ...| ..|+.|.||.
T Consensus 212 ---d~~l~~A~RNipgV~v~~v~~LNv~dLl~~~~~gr~vV~T~sAl~~Le~~~~~-~~~s---~~k~~~~lp~ 278 (362)
T 2wwb_H 212 ---DNGIVKALRNVPGVETANVASLNLLQLAPGAHLGRFVIWTEAAFTKLDQVWGS-ETVA---SSKVGYTLPS 278 (362)
T ss_dssp ---SCCCCTTTSCSSSCEEEESSSCCHHHHSTTSCCCCCEECCTTHHHHHHCCSSC-CCCC---C---------
T ss_pred ---ChhHHHHHhcCCCCcEEeeCCccHHHHhcccCcCCEEEEEHHHHHHHHHHHcc-CCcc---hhcccCcCCc
Confidence 58899999999999999999999 999965 999999999999999988 5555 3689999985
No 13
>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F* 1p84_F* 2ibz_H* 1kyo_F*
Probab=90.09 E-value=0.038 Score=47.69 Aligned_cols=24 Identities=46% Similarity=0.954 Sum_probs=3.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcC
Q psy5944 150 EEEEEEEEEEEEEEEEEEEITATL 173 (309)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~gP~ 173 (309)
+++++++++++|||||+||+.-|+
T Consensus 54 ee~eeeeeeeeeeeeeEEE~vDPk 77 (146)
T 3cx5_F 54 DEDEDDDDDDDEDEEEEEEVTDQL 77 (146)
T ss_dssp -------------------CCCHH
T ss_pred cccccccccccccccccccccChH
Confidence 344445555566666677777777
No 14
>3bbo_G Ribosomal protein L4; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=69.92 E-value=1 Score=42.55 Aligned_cols=16 Identities=56% Similarity=0.707 Sum_probs=1.1
Q ss_pred CCcccchhhhHHHHHH
Q psy5944 141 KGEEKEEEEEEEEEEE 156 (309)
Q Consensus 141 GG~af~~~~~~~~~~~ 156 (309)
|...|||+||+|||+|
T Consensus 260 ~~~~~~~~~~~~~~~~ 275 (293)
T 3bbo_G 260 GVDTLEDEDEEEEEEE 275 (293)
T ss_dssp CC--------------
T ss_pred ccccccccccchhhhc
Confidence 5556644443333333
No 15
>2wwb_H 60S ribosomal protein L4-B; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Triticum aestivum} PDB: 2wwa_H 2ww9_H 3izc_D 3izs_D 3o58_D 3o5h_D 3u5e_C 3u5i_C 1s1i_D 3jyw_D
Probab=44.46 E-value=10 Score=36.75 Aligned_cols=49 Identities=16% Similarity=0.045 Sum_probs=37.8
Q ss_pred CchhHHHHHHHHHHHhCCCCcCCCceeeeecccCCCCc-----cCCCCcccccC
Q psy5944 83 PRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPW-----PQKGLIERLDG 131 (309)
Q Consensus 83 ~r~dlIh~~V~~q~a~~Rqgta~tKtraEV~GsGRKpw-----rQKGTGrAR~G 131 (309)
++..++.+.-...+-+....+++..+.++.||+||-.. +|+|+.|+.+|
T Consensus 35 ih~vv~~~~an~RQgt~~tk~rgevtg~K~wGTGRAraripRv~g~Gs~RSp~g 88 (362)
T 2wwb_H 35 VHTVFTSVNKNKRQAYAVSEKAGHQTSAESWGTGRAVARIPRVGGGGTGRSGQG 88 (362)
T ss_dssp HHHHHHHHHHHHCCCCCCCSSSSCSSCCSSCCCCSSSCSCSCCCSCSSSSCSST
T ss_pred HHHHHHHHHHhccCCCCCCCcccccccceecCCCCCeeecccccCCCCCCCccc
Confidence 45666666667777778888888889999999999776 47787777763
No 16
>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: j.84.1.1 PDB: 1k73_I* 1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I* 1m90_I* 1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I* 1qvf_G 1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ...
Probab=42.17 E-value=5.3 Score=38.32 Aligned_cols=6 Identities=17% Similarity=-0.152 Sum_probs=0.0
Q ss_pred cccccc
Q psy5944 21 PAILDF 26 (309)
Q Consensus 21 ~a~l~~ 26 (309)
-.+||+
T Consensus 144 ~LgIPT 149 (348)
T 1vq8_G 144 SVGADA 149 (348)
T ss_dssp ------
T ss_pred HcCCCE
Confidence 445554
No 17
>1vq8_C 50S ribosomal protein L4E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.22.1.1 PDB: 1k73_E* 1k8a_E* 1k9m_E* 1kc8_E* 1kd1_E* 1kqs_C* 1m1k_E* 1m90_E* 1n8r_E* 1nji_E* 1q7y_E* 1q81_E* 1q82_E* 1q86_E* 1qvf_C 1qvg_C 1s72_C* 1vq4_C* 1vq5_C* 1vq6_C* ...
Probab=27.16 E-value=20 Score=32.91 Aligned_cols=31 Identities=6% Similarity=-0.063 Sum_probs=22.8
Q ss_pred HHhCCCCcCCCceeeeeccc--CCCCccCCCCcccc
Q psy5944 96 KKYKWVRFDHTKVTNEVERT--GRKPWPQKGLIERL 129 (309)
Q Consensus 96 ~a~~Rqgta~tKtraEV~Gs--GRKpwrQKGTGrAR 129 (309)
-.+.+.....-..+++|+|+ +.++| |||||+
T Consensus 35 v~~~~an~Rqgt~~~~~aG~kt~ae~~---GtGR~~ 67 (246)
T 1vq8_C 35 VRAAQANRKQDYGSDEYAGLRTPAESF---GSGRGQ 67 (246)
T ss_dssp HHHHHHHTCCCCCCCTTTTTCCCCBCC---CSSSSC
T ss_pred HHHHHHhcccCcccccccCcccceeec---cCCCCc
Confidence 33344444455668999999 99999 999987
No 18
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=22.12 E-value=1.4e+02 Score=26.74 Aligned_cols=61 Identities=11% Similarity=0.213 Sum_probs=39.9
Q ss_pred cccCCcccHHHHHHHHHHHhh-hcCCCeEEEeccC--CCCCCHHHHHHHHHHcCCCCceEEEec
Q psy5944 179 CRILPVMVHIVVGLTSTLSIK-LMQDDLHIVKDLV--LPVDDPKYLENLVEERCWGPSVLFVDN 239 (309)
Q Consensus 179 ~~klnkKvr~~lAl~saLS~K-~~~~~L~VVd~l~--l~~~kTk~l~~ll~~~~~~~svL~V~~ 239 (309)
...|..=++.+++|..||+.. +..-+++++|+.. ++....+.+.+++..+.-+..++++..
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH 280 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITH 280 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECC
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 346777777688888888743 3445899999864 444445677777777643444555554
No 19
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=21.72 E-value=1.2e+02 Score=27.87 Aligned_cols=51 Identities=10% Similarity=0.202 Sum_probs=31.1
Q ss_pred HHHHHHHHHhhhcCC--CeEEEeccCC--CCCCHHHHHHHHHHcCCCCceEEEec
Q psy5944 189 VVGLTSTLSIKLMQD--DLHIVKDLVL--PVDDPKYLENLVEERCWGPSVLFVDN 239 (309)
Q Consensus 189 ~lAl~saLS~K~~~~--~L~VVd~l~l--~~~kTk~l~~ll~~~~~~~svL~V~~ 239 (309)
.+||+.|++.-+..+ +++++|+... +......+.++|..+.-+..++++..
T Consensus 290 ~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th 344 (371)
T 3auy_A 290 ALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITH 344 (371)
T ss_dssp HHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEES
T ss_pred HHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEC
Confidence 356666776655544 7999998753 33334566777776543335665654
Done!