Your job contains 1 sequence.
>psy5944
MTISNTSGVFPFRETFGFRRPAILDFLWFNDFTSNKSEILHETKEFQNAFLQPRQAWVEN
LDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPW
PQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCR
ILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDNT
DYMERNISIVTDQIKHYNIMPAYGENNMLKHDTLVITVDALKQIEDKLLLALNRSDNERF
TSRFVIDTV
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy5944
(309 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0001995 - symbol:mRpL4 "mitochondrial ribosomal pr... 300 3.7e-50 2
RGD|1311777 - symbol:Mrpl4 "mitochondrial ribosomal prote... 253 2.2e-40 2
UNIPROTKB|K7ES61 - symbol:MRPL4 "39S ribosomal protein L4... 238 2.8e-40 2
UNIPROTKB|Q9BYD3 - symbol:MRPL4 "39S ribosomal protein L4... 238 2.8e-40 2
MGI|MGI:2137210 - symbol:Mrpl4 "mitochondrial ribosomal p... 249 4.6e-40 2
UNIPROTKB|F1PB94 - symbol:MRPL4 "Uncharacterized protein"... 241 1.5e-39 2
UNIPROTKB|Q32PI6 - symbol:MRPL4 "39S ribosomal protein L4... 241 3.2e-39 2
UNIPROTKB|F1S3J8 - symbol:MRPL4 "Uncharacterized protein"... 233 2.8e-38 2
ZFIN|ZDB-GENE-050522-388 - symbol:zgmrpl4 "mitochondrial ... 243 2.4e-37 2
WB|WBGene00020717 - symbol:mrpl-4 species:6239 "Caenorhab... 202 5.1e-34 2
UNIPROTKB|K7ELQ0 - symbol:MRPL4 "39S ribosomal protein L4... 207 2.6e-30 2
UNIPROTKB|K7EJ73 - symbol:MRPL4 "39S ribosomal protein L4... 143 5.6e-18 2
UNIPROTKB|K7ELF1 - symbol:MRPL4 "39S ribosomal protein L4... 207 8.6e-17 1
TAIR|locus:2061659 - symbol:AT2G20060 species:3702 "Arabi... 112 1.6e-11 2
UNIPROTKB|K7EKI4 - symbol:MRPL4 "39S ribosomal protein L4... 128 6.6e-08 1
TIGR_CMR|APH_0281 - symbol:APH_0281 "ribosomal protein L4... 91 1.4e-05 2
TIGR_CMR|BA_0111 - symbol:BA_0111 "ribosomal protein L4" ... 78 0.00010 2
TIGR_CMR|ECH_0410 - symbol:ECH_0410 "ribosomal protein L4... 78 0.00016 2
TIGR_CMR|SPO_3824 - symbol:SPO_3824 "ribosomal protein L4... 76 0.00069 2
>FB|FBgn0001995 [details] [associations]
symbol:mRpL4 "mitochondrial ribosomal protein L4"
species:7227 "Drosophila melanogaster" [GO:0005762 "mitochondrial
large ribosomal subunit" evidence=ISS] [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573
EMBL:AE014134 GO:GO:0006412 GO:GO:0005762 GO:GO:0003735
eggNOG:COG0088 Gene3D:3.40.1370.10 InterPro:IPR013005
PANTHER:PTHR10746 SUPFAM:SSF52166 TIGRFAMs:TIGR03953 CTD:51073
GeneTree:ENSGT00390000014512 OMA:VYGLNVY EMBL:AY061407
RefSeq:NP_524939.1 UniGene:Dm.1535 SMR:Q9V3D0 IntAct:Q9V3D0
STRING:Q9V3D0 EnsemblMetazoa:FBtr0080843 GeneID:49425
KEGG:dme:Dmel_CG5818 UCSC:CG5818-RA FlyBase:FBgn0001995
InParanoid:Q9V3D0 OrthoDB:EOG43FFCQ GenomeRNAi:49425 NextBio:839752
Uniprot:Q9V3D0
Length = 296
Score = 300 (110.7 bits), Expect = 3.7e-50, Sum P(2) = 3.7e-50
Identities = 60/123 (48%), Positives = 84/123 (68%)
Query: 189 VVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDNTDYMERNIS 248
V+GLTSTLS+KL QDDLHI+ ++ +P D ++L++L+ ER WGPSVL VD NI
Sbjct: 174 VLGLTSTLSVKLAQDDLHIIDNVDIPTGDAEFLKDLIAERNWGPSVLIVDEDHMFPANIC 233
Query: 249 IVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLLLALNRSDNERFTSRFVI 306
+D + + N+MP +G N +MLKHDTLV+TV A+K +E +LL LNR+D +F +
Sbjct: 234 QASDDLGYVNLMPTFGLNVYSMLKHDTLVLTVAAVKHLEQRLLYQLNRNDAASKGGKFKL 293
Query: 307 DTV 309
D V
Sbjct: 294 DQV 296
Score = 239 (89.2 bits), Expect = 3.7e-50, Sum P(2) = 3.7e-50
Identities = 43/89 (48%), Positives = 53/89 (59%)
Query: 54 RQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVE 113
RQAW+EN D E+ G + LHPD+F PR+D+I N+EWQ KY++V HTK EV
Sbjct: 65 RQAWIENTDAVAERKVGLIELHPDVFAAQPRVDIIQENVEWQSKYRYVSMAHTKTRAEVR 124
Query: 114 RTGRKPWPQKGLIERLDGKRRPRLYTGKG 142
GRKPWPQKG G R + G G
Sbjct: 125 GGGRKPWPQKGGGRARHGSLRSPMLKGGG 153
>RGD|1311777 [details] [associations]
symbol:Mrpl4 "mitochondrial ribosomal protein L4" species:10116
"Rattus norvegicus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR002136 InterPro:IPR023574
Pfam:PF00573 RGD:1311777 GO:GO:0005739 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 EMBL:CH473993 Gene3D:3.40.1370.10 InterPro:IPR013005
PANTHER:PTHR10746 SUPFAM:SSF52166 TIGRFAMs:TIGR03953
HAMAP:MF_01328_B CTD:51073 GeneTree:ENSGT00390000014512 OMA:VYGLNVY
OrthoDB:EOG4XKV7V IPI:IPI00201814 RefSeq:NP_001102224.1
UniGene:Rn.13113 Ensembl:ENSRNOT00000049706 GeneID:363023
KEGG:rno:363023 UCSC:RGD:1311777 NextBio:682165 Uniprot:D4A131
Length = 294
Score = 253 (94.1 bits), Expect = 2.2e-40, Sum P(2) = 2.2e-40
Identities = 55/118 (46%), Positives = 76/118 (64%)
Query: 175 PCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSV 234
P +LP+ V +GL L++KLMQDDLHIV L LP DP+YL L + R WG SV
Sbjct: 158 PTSYYYMLPMKVR-ALGLKVALTVKLMQDDLHIVDSLELPTADPQYLTELAQYRHWGSSV 216
Query: 235 LFVDNT-DYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLL 289
L VD T + M +N+ T ++ +N++PA G N +MLKH TLV+T+ ++ +EDKLL
Sbjct: 217 LLVDLTHEEMPKNVMAATSRLNSFNLIPAVGLNVYSMLKHQTLVLTLPSVAFLEDKLL 274
Score = 193 (73.0 bits), Expect = 2.2e-40, Sum P(2) = 2.2e-40
Identities = 37/91 (40%), Positives = 50/91 (54%)
Query: 52 QPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNE 111
+P QAWVE+L E++ G LHPD+F PRLD++ WQ+ +K + + TK E
Sbjct: 60 RPVQAWVESLRGFEQERIGLAELHPDVFATTPRLDILHQVAVWQRNFKRISYAKTKTRAE 119
Query: 112 VERTGRKPWPQKGLIERLDGKRRPRLYTGKG 142
V GRKPW QKG G R ++ G G
Sbjct: 120 VSGGGRKPWQQKGSGRARHGSIRSPIWRGGG 150
>UNIPROTKB|K7ES61 [details] [associations]
symbol:MRPL4 "39S ribosomal protein L4, mitochondrial"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR002136
InterPro:IPR023574 Pfam:PF00573 EMBL:AC011511 Gene3D:3.40.1370.10
InterPro:IPR013005 PANTHER:PTHR10746 SUPFAM:SSF52166
TIGRFAMs:TIGR03953 HAMAP:MF_01328_B HGNC:HGNC:14276
Ensembl:ENST00000592514 Uniprot:K7ES61
Length = 300
Score = 238 (88.8 bits), Expect = 2.8e-40, Sum P(2) = 2.8e-40
Identities = 54/118 (45%), Positives = 74/118 (62%)
Query: 175 PCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSV 234
P +LP+ V +GL L++KL QDDLHI+ L LP DP+YL L R WG SV
Sbjct: 158 PTSYYYMLPMKVR-ALGLKVALTVKLAQDDLHIMDSLELPTGDPQYLTELAHYRRWGDSV 216
Query: 235 LFVDNT-DYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLL 289
L VD T + M ++I T ++K +N++PA G N +MLKH TLV+T+ + +EDKLL
Sbjct: 217 LLVDLTHEEMPQSIVEATSRLKTFNLIPAVGLNVHSMLKHQTLVLTLPTVAFLEDKLL 274
Score = 207 (77.9 bits), Expect = 2.8e-40, Sum P(2) = 2.8e-40
Identities = 40/91 (43%), Positives = 52/91 (57%)
Query: 52 QPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNE 111
+P QAWVE+L E++ G +LHPD+F PRLD++ WQK +K + + TK E
Sbjct: 60 RPVQAWVESLRGFEQERVGLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAE 119
Query: 112 VERTGRKPWPQKGLIERLDGKRRPRLYTGKG 142
V GRKPWPQKG G R L+ G G
Sbjct: 120 VRGGGRKPWPQKGTGRARHGSIRSPLWRGGG 150
>UNIPROTKB|Q9BYD3 [details] [associations]
symbol:MRPL4 "39S ribosomal protein L4, mitochondrial"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573
EMBL:AB049635 GO:GO:0005739 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 EMBL:CH471106 EMBL:AC011511 eggNOG:COG0088
HOGENOM:HOG000248767 Gene3D:3.40.1370.10 InterPro:IPR013005
PANTHER:PTHR10746 SUPFAM:SSF52166 TIGRFAMs:TIGR03953 OMA:GKAHGPV
CTD:51073 HOVERGEN:HBG083638 OrthoDB:EOG4XKV7V EMBL:AF132962
EMBL:BC000756 EMBL:BC009858 EMBL:AY007152 IPI:IPI00023334
IPI:IPI00107137 RefSeq:NP_057040.2 RefSeq:NP_666499.1
RefSeq:NP_666500.1 UniGene:Hs.279652 ProteinModelPortal:Q9BYD3
SMR:Q9BYD3 IntAct:Q9BYD3 MINT:MINT-1389069 STRING:Q9BYD3
PhosphoSite:Q9BYD3 DMDM:74733471 PaxDb:Q9BYD3 PRIDE:Q9BYD3
Ensembl:ENST00000253099 Ensembl:ENST00000307422
Ensembl:ENST00000393733 GeneID:51073 KEGG:hsa:51073 UCSC:uc002mnm.3
UCSC:uc002mno.3 GeneCards:GC19P010362 HGNC:HGNC:14276 HPA:HPA051261
MIM:611823 neXtProt:NX_Q9BYD3 PharmGKB:PA30971 InParanoid:Q9BYD3
PhylomeDB:Q9BYD3 ChiTaRS:MRPL4 GenomeRNAi:51073 NextBio:53691
Bgee:Q9BYD3 CleanEx:HS_MRPL4 Genevestigator:Q9BYD3
GermOnline:ENSG00000105364 Uniprot:Q9BYD3
Length = 311
Score = 238 (88.8 bits), Expect = 2.8e-40, Sum P(2) = 2.8e-40
Identities = 54/118 (45%), Positives = 74/118 (62%)
Query: 175 PCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSV 234
P +LP+ V +GL L++KL QDDLHI+ L LP DP+YL L R WG SV
Sbjct: 158 PTSYYYMLPMKVR-ALGLKVALTVKLAQDDLHIMDSLELPTGDPQYLTELAHYRRWGDSV 216
Query: 235 LFVDNT-DYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLL 289
L VD T + M ++I T ++K +N++PA G N +MLKH TLV+T+ + +EDKLL
Sbjct: 217 LLVDLTHEEMPQSIVEATSRLKTFNLIPAVGLNVHSMLKHQTLVLTLPTVAFLEDKLL 274
Score = 207 (77.9 bits), Expect = 2.8e-40, Sum P(2) = 2.8e-40
Identities = 40/91 (43%), Positives = 52/91 (57%)
Query: 52 QPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNE 111
+P QAWVE+L E++ G +LHPD+F PRLD++ WQK +K + + TK E
Sbjct: 60 RPVQAWVESLRGFEQERVGLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAE 119
Query: 112 VERTGRKPWPQKGLIERLDGKRRPRLYTGKG 142
V GRKPWPQKG G R L+ G G
Sbjct: 120 VRGGGRKPWPQKGTGRARHGSIRSPLWRGGG 150
>MGI|MGI:2137210 [details] [associations]
symbol:Mrpl4 "mitochondrial ribosomal protein L4"
species:10090 "Mus musculus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573 MGI:MGI:2137210
GO:GO:0005739 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
eggNOG:COG0088 HOGENOM:HOG000248767 Gene3D:3.40.1370.10
InterPro:IPR013005 PANTHER:PTHR10746 SUPFAM:SSF52166
TIGRFAMs:TIGR03953 CTD:51073 GeneTree:ENSGT00390000014512
HOVERGEN:HBG083638 OMA:VYGLNVY OrthoDB:EOG4XKV7V EMBL:AB049634
EMBL:AB041599 EMBL:AK002464 EMBL:BC037064 EMBL:BC039983
EMBL:BC061095 IPI:IPI00121359 RefSeq:NP_075656.2 UniGene:Mm.427576
ProteinModelPortal:Q9DCU6 SMR:Q9DCU6 STRING:Q9DCU6
PhosphoSite:Q9DCU6 PaxDb:Q9DCU6 PRIDE:Q9DCU6
Ensembl:ENSMUST00000003386 GeneID:66163 KEGG:mmu:66163
UCSC:uc009oju.1 InParanoid:Q9DCU6 NextBio:320818 Bgee:Q9DCU6
CleanEx:MM_MRPL4 Genevestigator:Q9DCU6
GermOnline:ENSMUSG00000003299 Uniprot:Q9DCU6
Length = 294
Score = 249 (92.7 bits), Expect = 4.6e-40, Sum P(2) = 4.6e-40
Identities = 55/118 (46%), Positives = 75/118 (63%)
Query: 175 PCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSV 234
P +LP+ V +GL L++KLMQDDLHIV L LP DP+YL L + R WG SV
Sbjct: 158 PTSYYYMLPMKVR-ALGLKVALTVKLMQDDLHIVDSLELPTADPQYLTELAQYRHWGSSV 216
Query: 235 LFVDNT-DYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLL 289
L VD T + M +N+ T + +N++PA G N +MLKH TLV+T+ ++ +EDKLL
Sbjct: 217 LLVDLTHEEMPKNVVAATSGLNSFNLIPAVGLNVYSMLKHQTLVLTLPSVAFLEDKLL 274
Score = 194 (73.4 bits), Expect = 4.6e-40, Sum P(2) = 4.6e-40
Identities = 37/91 (40%), Positives = 51/91 (56%)
Query: 52 QPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNE 111
+P QAWVE+L E++ G LHPD+F PRLD++ WQ+ ++ + + +TK E
Sbjct: 60 RPVQAWVESLRGFEQERIGLAELHPDVFATAPRLDIVHQVAIWQRNFRRISYANTKTRAE 119
Query: 112 VERTGRKPWPQKGLIERLDGKRRPRLYTGKG 142
V GRKPW QKG G R L+ G G
Sbjct: 120 VSGGGRKPWQQKGSGRARHGSIRSPLWRGGG 150
>UNIPROTKB|F1PB94 [details] [associations]
symbol:MRPL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] InterPro:IPR002136
InterPro:IPR023574 Pfam:PF00573 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 Gene3D:3.40.1370.10 InterPro:IPR013005
PANTHER:PTHR10746 SUPFAM:SSF52166 TIGRFAMs:TIGR03953
HAMAP:MF_01328_B CTD:51073 GeneTree:ENSGT00390000014512 OMA:VYGLNVY
EMBL:AAEX03012426 RefSeq:XP_854013.1 Ensembl:ENSCAFT00000028364
GeneID:611273 KEGG:cfa:611273 Uniprot:F1PB94
Length = 294
Score = 241 (89.9 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
Identities = 56/118 (47%), Positives = 72/118 (61%)
Query: 175 PCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSV 234
P +LP+ V V GL L++KL QDDLHIV L LP DP+YL L R WG SV
Sbjct: 158 PTSYYYMLPMKVR-VQGLKVALTVKLAQDDLHIVDSLELPTSDPQYLTELARYRHWGDSV 216
Query: 235 LFVDNT-DYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLL 289
L VD + M +NI T +K +N++PA G N +MLKH TLV+T+ L +E+KLL
Sbjct: 217 LLVDLAYENMPQNIVAATTGLKTFNLIPAVGLNVYSMLKHQTLVLTLQTLAFLEEKLL 274
Score = 197 (74.4 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
Identities = 37/91 (40%), Positives = 52/91 (57%)
Query: 52 QPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNE 111
+P QAWVE+L E++ G LHP++F PRLD++ WQ+ +K + + TK E
Sbjct: 60 RPVQAWVESLRGYEQERVGLAELHPEVFSTAPRLDILHQVAIWQRNFKRISYAKTKTRAE 119
Query: 112 VERTGRKPWPQKGLIERLDGKRRPRLYTGKG 142
V+ GRKPWPQKG G R ++ G G
Sbjct: 120 VQGGGRKPWPQKGSGRSRHGSIRSPIWRGGG 150
>UNIPROTKB|Q32PI6 [details] [associations]
symbol:MRPL4 "39S ribosomal protein L4, mitochondrial"
species:9913 "Bos taurus" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573
GO:GO:0005739 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
eggNOG:COG0088 HOGENOM:HOG000248767 Gene3D:3.40.1370.10
InterPro:IPR013005 PANTHER:PTHR10746 SUPFAM:SSF52166
TIGRFAMs:TIGR03953 PDB:2FTC PDBsum:2FTC EMBL:BC108102
IPI:IPI00700987 RefSeq:NP_001032527.1 UniGene:Bt.40442
STRING:Q32PI6 PRIDE:Q32PI6 Ensembl:ENSBTAT00000001861 GeneID:507154
KEGG:bta:507154 CTD:51073 GeneTree:ENSGT00390000014512
HOVERGEN:HBG083638 InParanoid:Q32PI6 OMA:VYGLNVY OrthoDB:EOG4XKV7V
EvolutionaryTrace:Q32PI6 NextBio:20867926 Uniprot:Q32PI6
Length = 294
Score = 241 (89.9 bits), Expect = 3.2e-39, Sum P(2) = 3.2e-39
Identities = 55/118 (46%), Positives = 73/118 (61%)
Query: 175 PCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSV 234
P +LP+ V V GL L++KL QDDLHIV L LP DP+YL L R WG SV
Sbjct: 158 PTSYYYMLPMKVR-VQGLKVALTVKLAQDDLHIVDSLELPTTDPQYLMELARYRRWGDSV 216
Query: 235 LFVD-NTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLL 289
LFVD + M +N+ T +K +N++PA G N +MLKH TLV+T+ + +E+KLL
Sbjct: 217 LFVDLEHEDMPQNVVAATSGLKTFNLIPAIGLNVHSMLKHQTLVLTLPTVAFLEEKLL 274
Score = 194 (73.4 bits), Expect = 3.2e-39, Sum P(2) = 3.2e-39
Identities = 38/91 (41%), Positives = 50/91 (54%)
Query: 52 QPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNE 111
+P QAWVE+L E++ G LHPD+F PRLD++ WQK +K + + TK E
Sbjct: 60 RPVQAWVESLRGYEQERVGLTELHPDVFSTAPRLDILHQVAIWQKNFKRISYAKTKTRAE 119
Query: 112 VERTGRKPWPQKGLIERLDGKRRPRLYTGKG 142
V GRKPW QKG G R ++ G G
Sbjct: 120 VRGGGRKPWQQKGSGRARHGSIRSPIWRGGG 150
>UNIPROTKB|F1S3J8 [details] [associations]
symbol:MRPL4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573 GO:GO:0005739
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 Gene3D:3.40.1370.10
InterPro:IPR013005 PANTHER:PTHR10746 SUPFAM:SSF52166
TIGRFAMs:TIGR03953 HAMAP:MF_01328_B GeneTree:ENSGT00390000014512
OMA:VYGLNVY EMBL:CU657936 RefSeq:XP_003123269.2
Ensembl:ENSSSCT00000014920 GeneID:100511369 KEGG:ssc:100511369
Uniprot:F1S3J8
Length = 294
Score = 233 (87.1 bits), Expect = 2.8e-38, Sum P(2) = 2.8e-38
Identities = 54/118 (45%), Positives = 72/118 (61%)
Query: 175 PCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSV 234
P +LP+ V V GL L++KL QDDLHIV L LP DP+YL L R WG SV
Sbjct: 158 PTSYYYMLPMKVR-VQGLKVALTVKLAQDDLHIVDSLELPTADPQYLIELARYRRWGDSV 216
Query: 235 LFVD-NTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLL 289
L VD + M +N+ T +K +N++PA G N +MLKH TLV+T+ + +E+KLL
Sbjct: 217 LLVDLEHEDMPQNVVAATSGLKTFNLVPAVGLNVHSMLKHQTLVLTLPTVAFLEEKLL 274
Score = 193 (73.0 bits), Expect = 2.8e-38, Sum P(2) = 2.8e-38
Identities = 38/94 (40%), Positives = 51/94 (54%)
Query: 49 AFLQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKV 108
A +P QAW+E+L E++ G LHPD+F PRLD++ WQK +K + + TK
Sbjct: 57 AHRRPVQAWIESLRGYEQERVGLTELHPDVFSTAPRLDILHQVAIWQKNFKRISYAKTKT 116
Query: 109 TNEVERTGRKPWPQKGLIERLDGKRRPRLYTGKG 142
EV GRKPW QKG G R ++ G G
Sbjct: 117 RAEVRGGGRKPWVQKGSGRARHGSIRSPIWRGGG 150
>ZFIN|ZDB-GENE-050522-388 [details] [associations]
symbol:zgmrpl4 "mitochondrial ribosomal protein L4"
species:7955 "Danio rerio" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573
ZFIN:ZDB-GENE-050522-388 GO:GO:0005739 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 eggNOG:COG0088 HOGENOM:HOG000248767
Gene3D:3.40.1370.10 InterPro:IPR013005 PANTHER:PTHR10746
SUPFAM:SSF52166 TIGRFAMs:TIGR03953 GeneTree:ENSGT00390000014512
HOVERGEN:HBG083638 OMA:VYGLNVY OrthoDB:EOG4XKV7V EMBL:BC095145
IPI:IPI00505153 RefSeq:NP_001018572.1 UniGene:Dr.14878
STRING:Q503X2 Ensembl:ENSDART00000081765 GeneID:553771
KEGG:dre:553771 CTD:553771 InParanoid:Q503X2 NextBio:20880493
Bgee:Q503X2 Uniprot:Q503X2
Length = 302
Score = 243 (90.6 bits), Expect = 2.4e-37, Sum P(2) = 2.4e-37
Identities = 55/117 (47%), Positives = 76/117 (64%)
Query: 175 PCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSV 234
P +LP+ V V GL LS KL QD LHIV L +P DP+YL++LV+ R WG SV
Sbjct: 167 PTSYYYMLPMKVR-VQGLKIALSAKLAQDYLHIVDSLEIPTPDPQYLQDLVKHRQWGDSV 225
Query: 235 LFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLL 289
L VD + +NI T+ +K NI+PA G N ++LKH++LV+T++A+K +E KLL
Sbjct: 226 LIVDVGEEFPQNILKATEDLKTVNIIPALGLNVHSLLKHESLVLTLEAVKFLEKKLL 282
Score = 174 (66.3 bits), Expect = 2.4e-37, Sum P(2) = 2.4e-37
Identities = 35/94 (37%), Positives = 50/94 (53%)
Query: 49 AFLQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKV 108
A L P Q W+E+L + + G V+LHPD+F + RLD++ WQ+ +K + + + K
Sbjct: 66 AHLTPAQTWLESLGSRDSDQLGVVDLHPDVFSVPIRLDILHAVEVWQRNFKRISYANVKT 125
Query: 109 TNEVERTGRKPWPQKGLIERLDGKRRPRLYTGKG 142
EV GRKPW QK G R L+ G G
Sbjct: 126 RAEVRGGGRKPWQQKRTGRARHGSIRSPLWRGGG 159
>WB|WBGene00020717 [details] [associations]
symbol:mrpl-4 species:6239 "Caenorhabditis elegans"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573 GO:GO:0009792
GO:GO:0006898 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0006412 GO:GO:0040011 GO:GO:0000003 GO:GO:0005840
GO:GO:0003735 eggNOG:COG0088 HOGENOM:HOG000248767
Gene3D:3.40.1370.10 InterPro:IPR013005 PANTHER:PTHR10746
SUPFAM:SSF52166 GeneTree:ENSGT00390000014512 OMA:VYGLNVY
EMBL:FO081628 PIR:T32225 RefSeq:NP_505181.1
ProteinModelPortal:O17005 SMR:O17005 DIP:DIP-25082N IntAct:O17005
MINT:MINT-1044291 STRING:O17005 PaxDb:O17005
EnsemblMetazoa:T23B12.2 GeneID:179230 KEGG:cel:CELE_T23B12.2
UCSC:T23B12.2 CTD:179230 WormBase:T23B12.2 InParanoid:O17005
NextBio:904478 Uniprot:O17005
Length = 299
Score = 202 (76.2 bits), Expect = 5.1e-34, Sum P(2) = 5.1e-34
Identities = 36/77 (46%), Positives = 49/77 (63%)
Query: 47 QNAFLQPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHT 106
+N F++ QAWV NLDT E++ G V+LHPDIF PR+D++ N+ WQ Y+ V+
Sbjct: 42 ENPFIKTPQAWVSNLDTIEDEKLGLVDLHPDIFRTSPRIDILHRNLTWQSVYRNVQMTKM 101
Query: 107 KVTNEVERTGRKPWPQK 123
E+ GRKPWPQK
Sbjct: 102 LTKAEMPGGGRKPWPQK 118
Score = 199 (75.1 bits), Expect = 5.1e-34, Sum P(2) = 5.1e-34
Identities = 47/118 (39%), Positives = 74/118 (62%)
Query: 181 ILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLV-LPVDDPKYLENLVEERCWGPSVLFVDN 239
+LP V I GL L++K QDDLHIV + L DPKY +L E R +G SVLFVD+
Sbjct: 151 MLPDAVRIQ-GLCVALTLKHTQDDLHIVDKIQNLQNGDPKYWIDLCEARNYGYSVLFVDD 209
Query: 240 TDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLLLALNRS 295
D + ++ + N+MP YG N +++K+DT+V++ AL+++E++LL ++R+
Sbjct: 210 CDEISGGLAEAQQALPWLNVMPVYGLNCFSLMKYDTIVLSRSALERVEERLLTQMHRA 267
>UNIPROTKB|K7ELQ0 [details] [associations]
symbol:MRPL4 "39S ribosomal protein L4, mitochondrial"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR002136
InterPro:IPR023574 Pfam:PF00573 EMBL:AC011511 Gene3D:3.40.1370.10
InterPro:IPR013005 PANTHER:PTHR10746 SUPFAM:SSF52166
TIGRFAMs:TIGR03953 HGNC:HGNC:14276 Ensembl:ENST00000588502
Uniprot:K7ELQ0
Length = 220
Score = 207 (77.9 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
Identities = 40/91 (43%), Positives = 52/91 (57%)
Query: 52 QPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNE 111
+P QAWVE+L E++ G +LHPD+F PRLD++ WQK +K + + TK E
Sbjct: 59 RPVQAWVESLRGFEQERVGLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAE 118
Query: 112 VERTGRKPWPQKGLIERLDGKRRPRLYTGKG 142
V GRKPWPQKG G R L+ G G
Sbjct: 119 VRGGGRKPWPQKGTGRARHGSIRSPLWRGGG 149
Score = 143 (55.4 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
Identities = 31/64 (48%), Positives = 38/64 (59%)
Query: 175 PCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSV 234
P +LP+ V +GL L++KL QDDLHI+ L LP DP+YL L R WG SV
Sbjct: 157 PTSYYYMLPMKVR-ALGLKVALTVKLAQDDLHIMDSLELPTGDPQYLTELAHYRRWGDSV 215
Query: 235 LFVD 238
L VD
Sbjct: 216 LLVD 219
>UNIPROTKB|K7EJ73 [details] [associations]
symbol:MRPL4 "39S ribosomal protein L4, mitochondrial"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR002136
InterPro:IPR023574 Pfam:PF00573 EMBL:AC011511 Gene3D:3.40.1370.10
InterPro:IPR013005 PANTHER:PTHR10746 SUPFAM:SSF52166
HGNC:HGNC:14276 Ensembl:ENST00000590702 Uniprot:K7EJ73
Length = 119
Score = 143 (55.4 bits), Expect = 5.6e-18, Sum P(2) = 5.6e-18
Identities = 31/64 (48%), Positives = 38/64 (59%)
Query: 175 PCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSV 234
P +LP+ V +GL L++KL QDDLHI+ L LP DP+YL L R WG SV
Sbjct: 56 PTSYYYMLPMKVR-ALGLKVALTVKLAQDDLHIMDSLELPTGDPQYLTELAHYRRWGDSV 114
Query: 235 LFVD 238
L VD
Sbjct: 115 LLVD 118
Score = 97 (39.2 bits), Expect = 5.6e-18, Sum P(2) = 5.6e-18
Identities = 21/48 (43%), Positives = 25/48 (52%)
Query: 95 QKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERLDGKRRPRLYTGKG 142
QK +K + + TK EV GRKPWPQKG G R L+ G G
Sbjct: 1 QKNFKRISYAKTKTRAEVRGGGRKPWPQKGTGRARHGSIRSPLWRGGG 48
>UNIPROTKB|K7ELF1 [details] [associations]
symbol:MRPL4 "39S ribosomal protein L4, mitochondrial"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR002136
InterPro:IPR023574 Pfam:PF00573 EMBL:AC011511 Gene3D:3.40.1370.10
InterPro:IPR013005 PANTHER:PTHR10746 SUPFAM:SSF52166
HGNC:HGNC:14276 Ensembl:ENST00000590150 Uniprot:K7ELF1
Length = 163
Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
Identities = 40/91 (43%), Positives = 52/91 (57%)
Query: 52 QPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNE 111
+P QAWVE+L E++ G +LHPD+F PRLD++ WQK +K + + TK E
Sbjct: 71 RPVQAWVESLRGFEQERVGLADLHPDVFATAPRLDILHQVAMWQKNFKRISYAKTKTRAE 130
Query: 112 VERTGRKPWPQKGLIERLDGKRRPRLYTGKG 142
V GRKPWPQKG G R L+ G G
Sbjct: 131 VRGGGRKPWPQKGTGRARHGSIRSPLWRGGG 161
>TAIR|locus:2061659 [details] [associations]
symbol:AT2G20060 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA;ISS]
[GO:0015934 "large ribosomal subunit" evidence=ISS] [GO:0006354
"DNA-dependent transcription, elongation" evidence=RCA]
InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573 EMBL:CP002685
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 EMBL:AC006081 KO:K02926
Gene3D:3.40.1370.10 InterPro:IPR013005 PANTHER:PTHR10746
SUPFAM:SSF52166 TIGRFAMs:TIGR03953 HAMAP:MF_01328_B OMA:PWNQKGT
EMBL:AY072419 EMBL:BT002156 IPI:IPI00545678 PIR:E84584
RefSeq:NP_565463.1 UniGene:At.39751 HSSP:P38516
ProteinModelPortal:Q8VY61 SMR:Q8VY61 IntAct:Q8VY61 STRING:Q8VY61
PRIDE:Q8VY61 EnsemblPlants:AT2G20060.1 GeneID:816525
KEGG:ath:AT2G20060 TAIR:At2g20060 InParanoid:Q8VY61
PhylomeDB:Q8VY61 ProtClustDB:CLSN2688266 ArrayExpress:Q8VY61
Genevestigator:Q8VY61 Uniprot:Q8VY61
Length = 300
Score = 112 (44.5 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 30/107 (28%), Positives = 56/107 (52%)
Query: 190 VGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDNTDYMERNISI 249
+GL L+ + + L + DL LP K + N + VL V+ E+ + +
Sbjct: 195 LGLKIALTARAAEGKLLVFDDLGLPTHKTKNIVNYYNQMENTKKVLVVEGGPIDEK-LKL 253
Query: 250 VTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLLLALNR 294
T + + NI+P+ G N ++L HDTL+++ DA+ +I +++ +NR
Sbjct: 254 ATQNLHYVNIIPSIGLNVYSILLHDTLLMSRDAVNKIVERMHTPINR 300
Score = 110 (43.8 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 29/76 (38%), Positives = 37/76 (48%)
Query: 65 EEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKG 124
EEK GF+ L D+F + R D+I + WQ + TK +EV TGRKPW QKG
Sbjct: 99 EEK--GFMVLAGDVFDVPIRKDIIHNVVRWQLAKRQQGTHSTKTLSEVSGTGRKPWNQKG 156
Query: 125 LIERLDGKRRPRLYTG 140
G R + G
Sbjct: 157 TGRARHGTLRGPQFRG 172
>UNIPROTKB|K7EKI4 [details] [associations]
symbol:MRPL4 "39S ribosomal protein L4, mitochondrial"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR023574
EMBL:AC011511 InterPro:IPR013005 PANTHER:PTHR10746 SUPFAM:SSF52166
HGNC:HGNC:14276 Ensembl:ENST00000591054 Uniprot:K7EKI4
Length = 127
Score = 128 (50.1 bits), Expect = 6.6e-08, P = 6.6e-08
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 52 QPRQAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYK 99
+P QAWVE+L E++ G +LHPD+F PRLD++ WQK +K
Sbjct: 60 RPVQAWVESLRGFEQERVGLADLHPDVFATAPRLDILHQVAMWQKNFK 107
>TIGR_CMR|APH_0281 [details] [associations]
symbol:APH_0281 "ribosomal protein L4" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042255 "ribosome assembly" evidence=ISS] InterPro:IPR002136
InterPro:IPR023574 Pfam:PF00573 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0019843
eggNOG:COG0088 HOGENOM:HOG000248767 KO:K02926 Gene3D:3.40.1370.10
InterPro:IPR013005 PANTHER:PTHR10746 SUPFAM:SSF52166
TIGRFAMs:TIGR03953 RefSeq:YP_504893.1 ProteinModelPortal:Q2GL58
STRING:Q2GL58 GeneID:3931236 KEGG:aph:APH_0281 PATRIC:20949136
OMA:GKAHGPV ProtClustDB:PRK05319 BioCyc:APHA212042:GHPM-311-MONOMER
HAMAP:MF_01328_B Uniprot:Q2GL58
Length = 208
Score = 91 (37.1 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 21/71 (29%), Positives = 33/71 (46%)
Query: 70 GFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERL 129
G ++L+P +FGL PR DV+ + WQ + K +++ T KP+ QK
Sbjct: 14 GSIDLNPQVFGLEPRRDVLKEVVNWQLAKRRAGTHKAKGISDISGTTAKPYRQKHTGRAR 73
Query: 130 DGKRRPRLYTG 140
G R + G
Sbjct: 74 QGSLRSPQFRG 84
Score = 70 (29.7 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 22/101 (21%), Positives = 48/101 (47%)
Query: 190 VGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDNTDYMERNISI 249
+GL LS+K+ + L ++ L + + + + S L V + + +
Sbjct: 107 LGLKVALSMKVAANKLVVLDSLDVDLKKTADAKGVFGNFAGHSSYLVVSES--CKEEVVR 164
Query: 250 VTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKL 288
++ +++ G N ++LKHD +++TVD +K +E +L
Sbjct: 165 ACRNLRGVDLLKCVGINVLDILKHDCVILTVDTVKSLEGRL 205
>TIGR_CMR|BA_0111 [details] [associations]
symbol:BA_0111 "ribosomal protein L4" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 eggNOG:COG0088
HOGENOM:HOG000248767 KO:K02926 Gene3D:3.40.1370.10
InterPro:IPR013005 PANTHER:PTHR10746 SUPFAM:SSF52166
TIGRFAMs:TIGR03953 OMA:GKAHGPV ProtClustDB:PRK05319
HAMAP:MF_01328_B RefSeq:NP_842679.1 RefSeq:YP_016716.1
RefSeq:YP_026397.1 ProteinModelPortal:Q81VS9 DNASU:1086331
EnsemblBacteria:EBBACT00000008905 EnsemblBacteria:EBBACT00000014698
EnsemblBacteria:EBBACT00000019905 GeneID:1086331 GeneID:2819212
GeneID:2850889 KEGG:ban:BA_0111 KEGG:bar:GBAA_0111 KEGG:bat:BAS0111
BioCyc:BANT260799:GJAJ-122-MONOMER
BioCyc:BANT261594:GJ7F-124-MONOMER Uniprot:Q81VS9
Length = 207
Score = 78 (32.5 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 23/73 (31%), Positives = 30/73 (41%)
Query: 70 GFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERL 129
G + L IFG+ P V+ + Q+ K +EV GRKPW QKG
Sbjct: 15 GEIELAEAIFGIEPNEAVLFEAVMMQRASLRQGTHKVKTRSEVRGGGRKPWRQKGTGRAR 74
Query: 130 DGKRRPRLYTGKG 142
G R + G G
Sbjct: 75 QGSIRSPQWRGGG 87
Score = 77 (32.2 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 24/101 (23%), Positives = 54/101 (53%)
Query: 190 VGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDNTDYMERNISI 249
+ + S L+ K++++++ +++DLVL K + +++ L V D E ++ +
Sbjct: 108 LAIKSALATKVVENNIVVLEDLVLNAPKTKDMLAVLKGLTVEKKALIV-TADANE-SVEL 165
Query: 250 VTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKL 288
I ++ A G N ++L HD L++T A++++E+ L
Sbjct: 166 SARNIPGVTVITADGVNVLDVLHHDKLIMTKAAVEKVEEVL 206
>TIGR_CMR|ECH_0410 [details] [associations]
symbol:ECH_0410 "ribosomal protein L4" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0042255 "ribosome assembly" evidence=ISS]
InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 eggNOG:COG0088 HOGENOM:HOG000248767 KO:K02926
Gene3D:3.40.1370.10 InterPro:IPR013005 PANTHER:PTHR10746
SUPFAM:SSF52166 TIGRFAMs:TIGR03953 OMA:GKAHGPV ProtClustDB:PRK05319
HAMAP:MF_01328_B RefSeq:YP_507228.1 ProteinModelPortal:Q2GH55
STRING:Q2GH55 GeneID:3927219 KEGG:ech:ECH_0410 PATRIC:20576297
BioCyc:ECHA205920:GJNR-411-MONOMER Uniprot:Q2GH55
Length = 205
Score = 78 (32.5 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 20/81 (24%), Positives = 33/81 (40%)
Query: 60 NLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKP 119
N+ G ++L+P IF + R D++ M ++WQ + K ++ T KP
Sbjct: 4 NIINVNSDRIGTIDLNPLIFSVNYRPDILKMVVDWQLSKRRAGTHKAKTIGDISGTTAKP 63
Query: 120 WPQKGLIERLDGKRRPRLYTG 140
QK G R + G
Sbjct: 64 HRQKHTGRARQGSLRSPQFRG 84
Score = 75 (31.5 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 17/59 (28%), Positives = 35/59 (59%)
Query: 233 SVLFVDNTDYMERNISIVTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKLL 289
S L +D DY +++ + + ++ G N ++L+HD +++TV A+K +E++LL
Sbjct: 149 SFLIIDK-DY-NKSVVCSCRNLHNVTLLKQIGTNVLDILRHDCIILTVGAVKYLEERLL 205
>TIGR_CMR|SPO_3824 [details] [associations]
symbol:SPO_3824 "ribosomal protein L4" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042255 "ribosome assembly" evidence=ISS] InterPro:IPR002136
InterPro:IPR023574 Pfam:PF00573 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 eggNOG:COG0088 HOGENOM:HOG000248767 KO:K02926
Gene3D:3.40.1370.10 InterPro:IPR013005 PANTHER:PTHR10746
SUPFAM:SSF52166 TIGRFAMs:TIGR03953 OMA:GKAHGPV ProtClustDB:PRK05319
HAMAP:MF_01328_B RefSeq:YP_169012.1 ProteinModelPortal:Q5LLU7
PRIDE:Q5LLU7 GeneID:3195311 KEGG:sil:SPO3824 PATRIC:23381149
Uniprot:Q5LLU7
Length = 205
Score = 76 (31.8 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 22/77 (28%), Positives = 35/77 (45%)
Query: 58 VENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGR 117
V LD T+ G ++L +FGL PR D++ + WQ+ +EV + +
Sbjct: 5 VIKLDGTKA---GNIDLDEALFGLEPRADILHRVVRWQRNNAQAGTHKVLTKSEVSYSTK 61
Query: 118 KPWPQKGLIERLDGKRR 134
K + QKG G R+
Sbjct: 62 KIYRQKGTGGARHGSRK 78
Score = 71 (30.1 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 27/101 (26%), Positives = 46/101 (45%)
Query: 190 VGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDNTDYMERNISI 249
+GL LS K +L ++++ L V W L +D E +
Sbjct: 107 LGLRHALSAKAKAGELVVIENAEAE-GKTAALAKQVANLGW-KRALVIDGAAVNE-GFAR 163
Query: 250 VTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKL 288
I+ +I+P+ G N ++LK DTLV+T A++ +E +L
Sbjct: 164 AARNIEGLDILPSMGANVYDILKRDTLVLTKAAVEALEARL 204
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.140 0.430 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 309 283 0.00084 115 3 11 22 0.47 33
33 0.42 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 19
No. of states in DFA: 614 (65 KB)
Total size of DFA: 223 KB (2122 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 23.31u 0.08s 23.39t Elapsed: 00:00:27
Total cpu time: 23.31u 0.08s 23.39t Elapsed: 00:00:27
Start: Thu Aug 15 13:01:24 2013 End: Thu Aug 15 13:01:51 2013