RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5944
(309 letters)
>d2gycc1 c.22.1.1 (C:1-198) Ribosomal protein L4 {Escherichia coli
[TaxId: 562]}
Length = 198
Score = 82.0 bits (202), Expect = 3e-19
Identities = 37/219 (16%), Positives = 75/219 (34%), Gaps = 32/219 (14%)
Query: 70 GFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERL 129
+ + FG ++ + K EV +G+KPW QKG
Sbjct: 10 SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRAR 69
Query: 130 DGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRILPVMVHIV 189
G + ++ G +T P + + ++
Sbjct: 70 SGSIKSPIWRSGG--------------------------VTFAARPQDHSQKVNKKMYRG 103
Query: 190 VGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDNTDYMERNISI 249
L S LS + QD L +V+ + K L +++ ++ D + +
Sbjct: 104 -ALKSILSELVRQDRLIVVEKFSVEAPKTKLLAQKLKDMALEDVLIITGELDEN---LFL 159
Query: 250 VTDQIKHYNIMPAYGEN--NMLKHDTLVITVDALKQIED 286
+ ++ A G + +++ D +V+T DA+KQ+E+
Sbjct: 160 AARNLHKVDVRDATGIDPVSLIAFDKVVMTADAVKQVEE 198
>d1dmga_ c.22.1.1 (A:) Ribosomal protein L4 {Thermotoga maritima
[TaxId: 2336]}
Length = 225
Score = 69.4 bits (169), Expect = 2e-14
Identities = 52/248 (20%), Positives = 90/248 (36%), Gaps = 46/248 (18%)
Query: 60 NLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKP 119
+L + + G + + +F + P DV+ ++ Q + TK EV GRKP
Sbjct: 4 DLLNVKGEKVGTLEISDFVFNIDPNYDVMWRYVDMQLSNRRAGTASTKTRGEVSGGGRKP 63
Query: 120 WPQKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLC 179
WPQK G R ++ G + P
Sbjct: 64 WPQKHTGRARHGSIRSPIWRHGG--------------------------VVHGPKPRDWS 97
Query: 180 RILPVMVHIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEE-RCWGPSVLFV- 237
+ L + + L S LS+K ++ L ++ DL L K L+ +++ + L V
Sbjct: 98 KKLNKKMKKLA-LRSALSVKYRENKLLVLDDLKLERPKTKSLKEILQNLQLSDKKTLIVL 156
Query: 238 DNTDYMERNISIVTDQIKHYNIMPAYGENN-----------------MLKHDTLVITVDA 280
+ N+ + + ++ A NN MLK+D LV+T D
Sbjct: 157 PWKEEGYMNVKLSGRNLPDVKVIIADNPNNSKNGEKAVRIDGLNVFDMLKYDYLVLTRDM 216
Query: 281 LKQIEDKL 288
+ +IE+ L
Sbjct: 217 VSKIEEVL 224
>d2zjrc1 c.22.1.1 (C:2-198) Ribosomal protein L4 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 197
Score = 62.0 bits (150), Expect = 4e-12
Identities = 37/206 (17%), Positives = 67/206 (32%), Gaps = 31/206 (15%)
Query: 83 PRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERLDGKRRPRLYTGKG 142
V+ + WQ + T+ +V +TGRK + QKG G R + G
Sbjct: 21 VNSGVLHEVVTWQLASRRRGTASTRTRAQVSKTGRKMYGQKGTGNARHGDRSVPTFVG-- 78
Query: 143 EEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQ 202
+ P LP +GL ++ +
Sbjct: 79 ------------------------GGVAFGPKPRSYDYTLPRQ-VRQLGLAMAIASRQEG 113
Query: 203 DDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDNTDYMERNISIVTDQIKHYNIMPA 262
L V + K + ++ + + TD + + +++P
Sbjct: 114 GKLVAVDGFDIADAKTKNFISWAKQNGLDGTEKVLLVTDDENTRRA--ARNVSWVSVLPV 171
Query: 263 YGEN--NMLKHDTLVITVDALKQIED 286
G N ++L+HD LVI AL+ +E+
Sbjct: 172 AGVNVYDILRHDRLVIDAAALEIVEE 197
>d2j01f1 c.22.1.1 (F:1-208) Ribosomal protein L4 {Thermus
thermophilus [TaxId: 274]}
Length = 208
Score = 59.4 bits (143), Expect = 4e-11
Identities = 36/217 (16%), Positives = 67/217 (30%), Gaps = 35/217 (16%)
Query: 76 PDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERLDGKRRP 135
++ + WQ + TK EV +GRK WPQK G
Sbjct: 21 AADLPAEINPHLLWEVVRWQLAKRRRGTASTKTRGEVAYSGRKIWPQKHTGRARHGDIGA 80
Query: 136 RLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRILPVMVHIVVGLTST 195
++ G G + P LP GL
Sbjct: 81 PIFVGGG--------------------------VVFGPKPRDYSYTLPKK-VRKKGLAMA 113
Query: 196 LSIKLMQDDLHIVKDLVLPVDDPKYLENLVEER--CWGPSVLFVDNTDYMERNISIVTDQ 253
++ + + L +V+ K +E SVL V + + R
Sbjct: 114 VADRAREGKLLLVEAFAGVNGKTKEFLAWAKEAGLDGSESVLLVTGNELVRRA----ARN 169
Query: 254 IKHYNIMPAYGEN--NMLKHDTLVITVDALKQIEDKL 288
+ + G N ++++ + LV+ +DA + ++++
Sbjct: 170 LPWVVTLAPEGLNVYDIVRTERLVMDLDAWEVFQNRI 206
>d1vqoc1 c.22.1.1 (C:1-246) Ribosomal protein L4 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 246
Score = 45.5 bits (107), Expect = 2e-06
Identities = 34/270 (12%), Positives = 74/270 (27%), Gaps = 62/270 (22%)
Query: 55 QAWVENLDTTEEKHFGFVNLHPDIFGLVPRLDVITMNIEWQKKYKWVRFDHTKVTNEVER 114
QA + +LD + G V+L PD+F R D+I + + + + +
Sbjct: 2 QATIYDLDGNTD---GEVDL-PDVFETPVRSDLIGKAVRAAQANRKQDYGSDEYAGLRTP 57
Query: 115 TG--RKPWPQKGLIERLDGKRRPRLYTG-------KGEEKEEEEEEEEEEEEEEEEEEEE 165
Q + + RR K E+ + ++E +
Sbjct: 58 AESFGSGRGQAHVPKLDGRARRVPQAVKGRSAHPPKTEKDRSLDLNDKERQ--------- 108
Query: 166 EEEITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQDDLHIV-KDLVLPVDDPKYLENL 224
L + L + + +D++ +V D + + + +L
Sbjct: 109 ------------LAVRSALAATADADLVADRGHEFDRDEVPVVVSDDFEDLVKTQEVVSL 156
Query: 225 VEERCWGPSVLFVDN---------------------TDYMERNISIVTDQIKHYNIMPAY 263
+E + D S + ++ A
Sbjct: 157 LEALDVHADIDRADETKIKAGQGSARGRKYRRPASILFVTSDEPSTAARNLAGADVATAS 216
Query: 264 GEN--NMLKHDTL----VITVDALKQIEDK 287
N ++ V T AL ++ ++
Sbjct: 217 EVNTEDLAPGGAPGRLTVFTESALAEVAER 246
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 33.8 bits (77), Expect = 0.020
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 133 RRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEE 168
+R R+ +G+ + K E+ + +E E E E +E
Sbjct: 65 QRSRIISGQEQPKPEQIAKGQEIVESLNETELLVDE 100
Score = 29.6 bits (66), Expect = 0.39
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 141 KGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRIL 182
KG+E E E E +EEE+ + + EE P L
Sbjct: 83 KGQEIVESLNETELLVDEEEKAQNDSEEEQVKGIPSFWLTAL 124
Score = 26.5 bits (58), Expect = 4.0
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 146 EEEEEEEEEEEEEEEEEEEEEEEITA 171
+E+ + E+ + +E E E E+
Sbjct: 73 QEQPKPEQIAKGQEIVESLNETELLV 98
Score = 26.1 bits (57), Expect = 5.8
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 141 KGEEKEEEEEEEEEEEEEEEEEEEEEEEITAT 172
++ E E E +EEE+ + + E
Sbjct: 82 AKGQEIVESLNETELLVDEEEKAQNDSEEEQV 113
>d1ofcx3 a.187.1.1 (X:697-798) HAND domain of the nucleosome
remodeling ATPase ISWI {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 102
Score = 30.2 bits (68), Expect = 0.084
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 131 GKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEE 168
G + P+ + + + EE+ + +E E EEE +E
Sbjct: 55 GYKVPKNTELGSDATKVQREEQRKIDEAEPLTEEEIQE 92
Score = 26.7 bits (59), Expect = 1.3
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 143 EEKEEEEEEEEEEEEEEEEEEEEEE 167
++EE+ + +E E EEE +E+E
Sbjct: 71 VQREEQRKIDEAEPLTEEEIQEKEN 95
Score = 26.7 bits (59), Expect = 1.6
Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 5/31 (16%)
Query: 143 EEKEEEEEEEEEEEEEEE-----EEEEEEEE 168
+ + + EE+ + +E EEE +E+E
Sbjct: 64 LGSDATKVQREEQRKIDEAEPLTEEEIQEKE 94
Score = 26.3 bits (58), Expect = 1.8
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 143 EEKEEEEEEEEEEEEEEEEEEEEEEE 168
+ + EE+ + +E E EEE +E+E
Sbjct: 70 KVQREEQRKIDEAEPLTEEEIQEKEN 95
Score = 24.8 bits (54), Expect = 5.9
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 8/35 (22%)
Query: 140 GKGEEKEEEEEEEE--------EEEEEEEEEEEEE 166
G K + EE+ + EEE +E+E +
Sbjct: 65 GSDATKVQREEQRKIDEAEPLTEEEIQEKENLLSQ 99
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc
43554 [TaxId: 232]}
Length = 464
Score = 30.8 bits (69), Expect = 0.20
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 110 NEVERTGRKPWPQKGLIERLD 130
+ ER GR W + G+IER+
Sbjct: 163 DVTERNGRLHWSRNGIIERIK 183
>d1gsma2 b.1.1.4 (A:91-206) Mucosal addressin cell adhesion
molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 116
Score = 27.6 bits (61), Expect = 0.87
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 142 GEEKEEEEEEEEEEEEEEEEEEEEEEE 168
G ++ E + E +EEEEE + +E+
Sbjct: 42 GGQELEGAQALGPEVQEEEEEPQGDED 68
Score = 27.2 bits (60), Expect = 1.3
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 137 LYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEI 169
L G G+E E + E +EEEEE + +E+ +
Sbjct: 39 LLVG-GQELEGAQALGPEVQEEEEEPQGDEDVL 70
Score = 24.9 bits (54), Expect = 8.1
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 143 EEKEEEEEEEEEEEEEEEEEEEEEEEIT 170
E + E +EEEEE + +E+ +T
Sbjct: 47 EGAQALGPEVQEEEEEPQGDEDVLFRVT 74
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 28.2 bits (62), Expect = 1.3
Identities = 6/27 (22%), Positives = 14/27 (51%)
Query: 143 EEKEEEEEEEEEEEEEEEEEEEEEEEI 169
+ +E+E+ +E ++E + EI
Sbjct: 267 LALKLQEQEQLLKEGFQKESRIMKNEI 293
Score = 28.2 bits (62), Expect = 1.4
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 143 EEKEEEEEEEEEEEEEEEEEEEEEEE 168
EK E + + +E+E + +E+
Sbjct: 249 TEKMENDRVQLLKEQERTLALKLQEQ 274
Score = 27.8 bits (61), Expect = 1.8
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 143 EEKEEEEEEEEEEEEEEEEEEEEEEE 168
E+ E + + +E+E + +E+E
Sbjct: 250 EKMENDRVQLLKEQERTLALKLQEQE 275
Score = 27.4 bits (60), Expect = 2.4
Identities = 6/26 (23%), Positives = 15/26 (57%)
Query: 143 EEKEEEEEEEEEEEEEEEEEEEEEEE 168
+E+E + +E+E+ +E ++E
Sbjct: 261 KEQERTLALKLQEQEQLLKEGFQKES 286
Score = 27.0 bits (59), Expect = 2.7
Identities = 8/47 (17%), Positives = 20/47 (42%)
Query: 122 QKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEE 168
Q+ + ++ K R K ++ E + + +E+E + +E
Sbjct: 227 QRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQE 273
Score = 26.6 bits (58), Expect = 4.0
Identities = 5/31 (16%), Positives = 14/31 (45%)
Query: 144 EKEEEEEEEEEEEEEEEEEEEEEEEITATLN 174
E + + +E+E + +E+E+ +
Sbjct: 253 ENDRVQLLKEQERTLALKLQEQEQLLKEGFQ 283
Score = 26.2 bits (57), Expect = 5.9
Identities = 5/25 (20%), Positives = 12/25 (48%)
Query: 143 EEKEEEEEEEEEEEEEEEEEEEEEE 167
E + +E+E+ +E ++E
Sbjct: 264 ERTLALKLQEQEQLLKEGFQKESRI 288
Score = 25.9 bits (56), Expect = 6.5
Identities = 4/27 (14%), Positives = 15/27 (55%)
Query: 143 EEKEEEEEEEEEEEEEEEEEEEEEEEI 169
+ + + + +E+E + +E+E++
Sbjct: 251 KMENDRVQLLKEQERTLALKLQEQEQL 277
Score = 25.9 bits (56), Expect = 7.1
Identities = 5/31 (16%), Positives = 17/31 (54%)
Query: 143 EEKEEEEEEEEEEEEEEEEEEEEEEEITATL 173
+ +E+E+ +E ++E + E +++ +
Sbjct: 270 KLQEQEQLLKEGFQKESRIMKNEIQDLQTKM 300
Score = 25.9 bits (56), Expect = 7.5
Identities = 8/52 (15%), Positives = 20/52 (38%)
Query: 122 QKGLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEEEITATL 173
K L E + + ++ ++ E+ E + + +E+E + L
Sbjct: 220 AKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKL 271
>d1mula_ a.55.1.1 (A:) HU protein {Escherichia coli [TaxId: 562]}
Length = 90
Score = 26.3 bits (58), Expect = 1.5
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 85 LDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERLDGKRRPRLYTGK 141
L IT +++ + V F KV + ERTGR PQ G ++ P +GK
Sbjct: 29 LAAITESLKEGDAVQLVGFGTFKVNHRAERTGRN--PQTGKEIKIAAANVPAFVSGK 83
>d1owfa_ a.55.1.1 (A:) Integration host factor alpha subunit (IHFA)
{Escherichia coli [TaxId: 562]}
Length = 96
Score = 26.3 bits (58), Expect = 1.7
Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 85 LDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERLDGKRRPRLYTGK 141
+ I +E ++ K F + + ++ +R GR P+ G + +R G+
Sbjct: 30 FEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRN--PKTGEDIPITARRVVTFRPGQ 84
>d1p32a_ d.25.1.1 (A:) Acidic mitochondrial matrix protein p32
{Human (Homo sapiens) [TaxId: 9606]}
Length = 209
Score = 27.2 bits (60), Expect = 2.4
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 144 EKEEEEEEEEEEEEEEEEEEEEEEEITATLN 174
+ EEE + ++ EE+E E+T+T N
Sbjct: 64 NSIPPTFDGEEEPSQGQKVEEQEPELTSTPN 94
Score = 25.7 bits (56), Expect = 6.6
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 146 EEEEEEEEEEEEEEEEEEEEEEEITATLN 174
+ EEE + ++ EE+E E T
Sbjct: 68 PTFDGEEEPSQGQKVEEQEPELTSTPNFV 96
Score = 25.7 bits (56), Expect = 7.0
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 143 EEKEEEEEEEEEEEEEEEEEEEEEEEITATLN 174
+ EEE + ++ EE+E E +
Sbjct: 67 PPTFDGEEEPSQGQKVEEQEPELTSTPNFVVE 98
>d1qkla_ a.143.1.2 (A:) RPB6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 127
Score = 26.3 bits (58), Expect = 2.7
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 143 EEKEEEEEEEEEEEEEEEEEEEEEEEITA 171
+ + ++ ++ EE+E ++ E EEE
Sbjct: 6 DNFDGDDFDDVEEDEGLDDLENAEEEGQE 34
Score = 25.5 bits (56), Expect = 4.6
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 143 EEKEEEEEEEEEEEEEEEEEEEEEEEI 169
E+ + ++ ++ EE+E ++ E EE
Sbjct: 5 EDNFDGDDFDDVEEDEGLDDLENAEEE 31
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 250
Score = 27.0 bits (59), Expect = 3.0
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
Query: 124 GLIERLDGKRRPRLYTGKGEEKEEEEEEEEEEEEEEEEEEEEEE 167
+ R +GK R+ ++E E+ ++ EEEE + E E+
Sbjct: 213 ATLTRENGKTVIRVLK------QKEVEQLIKKHEEEEAKAEREK 250
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 26.4 bits (58), Expect = 3.0
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 143 EEKEEEEEEEEEEEEEEEEEEEEEEE 168
+K E +E E E +E++
Sbjct: 99 AQKMESNKENREAHLAAMLERLQEKD 124
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 268
Score = 26.9 bits (59), Expect = 3.1
Identities = 23/172 (13%), Positives = 59/172 (34%), Gaps = 26/172 (15%)
Query: 141 KGEEKEEEEEEEEEEEEEEEEEEEEEEEITATLN--------------PCGLCRILPVMV 186
E ++ EE + ++ EE + + + A++N P GL +L +
Sbjct: 98 SEENVQKVEELIMDTLKKLAEEGFDNDAVEASMNTIEFSLRENNTGSFPRGLSLMLQSIS 157
Query: 187 HIVVGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCWGPSVLFVDNTDYMERN 246
+ + +K + L +K + L+E+ L ++N+ +
Sbjct: 158 KWIYDMDPFEPLKY-TEPLKALKTRIAEEGSKAVFSPLIEK-------LILNNSHRVTIE 209
Query: 247 ISIVTDQIKHYNIMPAYGENNMLKHDTLVITVDALKQIEDKLLLALNRSDNE 298
+ ++ + E N+L+ +T + L ++ + +
Sbjct: 210 MQPDPEKATQEEVE----EKNILEKVKAAMTEEDLAELARATEELKLKQETP 257
>d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)
{Burkholderia glumae [TaxId: 337]}
Length = 280
Score = 26.5 bits (58), Expect = 4.5
Identities = 1/27 (3%), Positives = 9/27 (33%)
Query: 143 EEKEEEEEEEEEEEEEEEEEEEEEEEI 169
++++ + ++ E +
Sbjct: 249 QDRDARIAQLRQQTFTAPGEAIRAASL 275
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1
{Thermotoga maritima [TaxId: 2336]}
Length = 333
Score = 26.2 bits (57), Expect = 4.9
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 143 EEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGL 178
+E +E E EE E E E E+ E+E+
Sbjct: 43 KETQEFIELLREEGENELEIEKYEKELDQLYQELLF 78
>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal
domain {Bacillus stearothermophilus [TaxId: 1422]}
Length = 323
Score = 26.5 bits (57), Expect = 5.0
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 144 EKEEEEEEEEEEEEEEEEE 162
K E E++ E+ E
Sbjct: 303 WKVEAEDKTEKLAAALEHH 321
Score = 26.1 bits (56), Expect = 5.4
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 148 EEEEEEEEEEEEEEEE 163
E E++ E+ E
Sbjct: 306 EAEDKTEKLAAALEHH 321
Score = 26.1 bits (56), Expect = 5.4
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 149 EEEEEEEEEEEEEEEE 164
E E++ E+ E
Sbjct: 306 EAEDKTEKLAAALEHH 321
Score = 26.1 bits (56), Expect = 5.4
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 150 EEEEEEEEEEEEEEEE 165
E E++ E+ E
Sbjct: 306 EAEDKTEKLAAALEHH 321
Score = 26.1 bits (56), Expect = 5.4
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 151 EEEEEEEEEEEEEEEE 166
E E++ E+ E
Sbjct: 306 EAEDKTEKLAAALEHH 321
Score = 26.1 bits (56), Expect = 5.4
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 152 EEEEEEEEEEEEEEEE 167
E E++ E+ E
Sbjct: 306 EAEDKTEKLAAALEHH 321
Score = 26.1 bits (56), Expect = 5.4
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 153 EEEEEEEEEEEEEEEE 168
E E++ E+ E
Sbjct: 306 EAEDKTEKLAAALEHH 321
>d1us7b_ a.205.1.1 (B:) Hsp90 co-chaperone CDC37 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 201
Score = 25.9 bits (57), Expect = 6.1
Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 8/94 (8%)
Query: 143 EEKEEEEEEEEEEEEEEEEEEEEEEEITATLNPCGLCRILPVMVHIVVGLTSTLSIKLMQ 202
E +E + E+ +E EEEE L P GL V + L L
Sbjct: 110 EAFKERVRGRAKLRIEKAMKEYEEEERKKRLGPGGL-----DPVEVYESLPEELQKCFDV 164
Query: 203 DDLHIVKDLV--LPVDDPKY-LENLVEERCWGPS 233
D+ +++D + + D KY ++ ++ W P+
Sbjct: 165 KDVQMLQDAISKMDPTDAKYHMQRCIDSGLWVPN 198
>d2f2ha4 c.1.8.13 (A:248-585) Putative glucosidase YicI, domain 2
{Escherichia coli [TaxId: 562]}
Length = 338
Score = 25.9 bits (56), Expect = 6.2
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 85 LDVITMNIEWQKKYKWVRFD 104
L V + W K ++W F+
Sbjct: 53 LHVFHFDCFWMKAFQWCDFE 72
>d2c1ia1 c.6.2.3 (A:268-463) Peptidoglycan GlcNAc deacetylase
C-terminal domain {Streptococcus pneumoniae [TaxId:
1313]}
Length = 196
Score = 25.5 bits (55), Expect = 8.3
Identities = 14/69 (20%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 220 YLENLVEERCWGPSVLFVDNTDYMERNISIVTDQIKHYNIMPAYGENNMLKHDTLVITVD 279
+++ + VD+ D+ +N + + +I+H + +L HD TV+
Sbjct: 103 ITDDIRNSLDLSFIMWDVDSLDWKSKNEASILTEIQHQ----VANGSIVLMHDIHSPTVN 158
Query: 280 ALKQIEDKL 288
AL ++ + L
Sbjct: 159 ALPRVIEYL 167
>d2j01t1 b.34.5.6 (T:1-138) Ribosomal protein L19 {Thermus
thermophilus [TaxId: 274]}
Length = 138
Score = 24.9 bits (54), Expect = 8.7
Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 8/57 (14%)
Query: 119 PWPQKGLIERLDGKRRPRLY-----TGKG---EEKEEEEEEEEEEEEEEEEEEEEEE 167
P QK I + RR +LY + + + + + + +++ E +EE ++
Sbjct: 81 PLIQKIDIVQRGRARRAKLYFIRNLSDREIRRKLRADRKRIDQDRAAERAAKEEAQK 137
>d1huua_ a.55.1.1 (A:) HU protein {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 90
Score = 24.4 bits (53), Expect = 8.9
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 85 LDVITMNIEWQKKYKWVRFDHTKVTNEVERTGRKPWPQKGLIERLDGKRRPRLYTGK 141
D IT + K + + F + +V R GR PQ G + + P GK
Sbjct: 29 FDSITEALRKGDKVQLIGFGNFEVRERAARKGRN--PQTGEEMEIPASKVPAFKPGK 83
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.137 0.406
Gapped
Lambda K H
0.267 0.0523 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,228,815
Number of extensions: 62512
Number of successful extensions: 741
Number of sequences better than 10.0: 1
Number of HSP's gapped: 539
Number of HSP's successfully gapped: 130
Length of query: 309
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 224
Effective length of database: 1,240,546
Effective search space: 277882304
Effective search space used: 277882304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.7 bits)