BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5945
(568 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P69478|CHSTB_RAT Carbohydrate sulfotransferase 11 OS=Rattus norvegicus GN=Chst11
PE=1 SV=1
Length = 352
Score = 197 bits (501), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 119/293 (40%), Positives = 164/293 (55%), Gaps = 19/293 (6%)
Query: 32 NWSLTHFERLEYLTSQCLTYKEDLNKSSVLEDEQVLEHILVDKKHKLLYCYVPKVACTNW 91
N ++ H R + +T C K VL L+H++VD+ H+L+YCYVPKVACTNW
Sbjct: 73 NTAILHQMRRDQVTDTCRANSAMSRKRRVLTPND-LKHLVVDEDHELIYCYVPKVACTNW 131
Query: 92 KRIFLILVGQINTTDPSSIPADVAHKLTMNYK-LSNFSKDEIHHFLESYTKFLFVRHPFE 150
KR+ ++L G+ +DP IPA+ AH ++ N K L+ +S EI+H L+SY KFLFVR PFE
Sbjct: 132 KRLMMVLSGRGKYSDPMEIPANEAH-VSANLKTLNQYSIPEINHRLKSYMKFLFVREPFE 190
Query: 151 RLVSAFHNKLEQSYSSSKYFQSRFGKHIIKTIRTRPTNHSLNHGDDVTFNEFATFLT--K 208
RLVSA+ NK Q Y++S F R+G II+ R T +L GDDV F EF +L
Sbjct: 191 RLVSAYRNKFTQKYNTS--FHKRYGTKIIRRQRKNATQEALRKGDDVKFEEFVAYLIDPH 248
Query: 209 NGRGEEMNEHWRPVHHLCQPCKINYDFIGKEIPNYPRKHETLYEDANLLLREIGVPQKFN 268
R E NEHW+ V+ LC PC I+YD +G K+ETL ED+N +LR GV
Sbjct: 249 TQREEPFNEHWQTVYSLCHPCHIHYDLVG--------KYETLEEDSNYVLRLAGVSGYL- 299
Query: 269 QNFSFKVKNTEVSFERIKECGPRGGAEAQNRGDRQFNMEIRITNLPKDLPEFL 321
F K+T + E E AE Q + + ++ + N +P +L
Sbjct: 300 -KFPTYAKSTRTTDEMTTEFFQNISAEHQTQLYEVYKLDFLMFNY--SVPNYL 349
>sp|Q9JME2|CHSTB_MOUSE Carbohydrate sulfotransferase 11 OS=Mus musculus GN=Chst11 PE=2
SV=1
Length = 352
Score = 195 bits (496), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 118/293 (40%), Positives = 164/293 (55%), Gaps = 19/293 (6%)
Query: 32 NWSLTHFERLEYLTSQCLTYKEDLNKSSVLEDEQVLEHILVDKKHKLLYCYVPKVACTNW 91
N ++ H R + +T C K VL L+H++VD+ H+L+YCYVPKVACTNW
Sbjct: 73 NTAILHQMRRDQVTDTCRANSAMSRKRRVLTPND-LKHLVVDEDHELIYCYVPKVACTNW 131
Query: 92 KRIFLILVGQINTTDPSSIPADVAHKLTMNYK-LSNFSKDEIHHFLESYTKFLFVRHPFE 150
KR+ ++L G+ +DP IPA+ AH ++ N K L+ +S EI+H L+SY KFLFVR PFE
Sbjct: 132 KRLMMVLSGRGKYSDPMEIPANEAH-VSANLKTLNQYSIPEINHRLKSYMKFLFVREPFE 190
Query: 151 RLVSAFHNKLEQSYSSSKYFQSRFGKHIIKTIRTRPTNHSLNHGDDVTFNEFATFLT--K 208
RLVSA+ NK Q Y++S F R+G II+ R T +L GDDV F EF +L
Sbjct: 191 RLVSAYRNKFTQKYNTS--FHKRYGTKIIRRQRKNATQEALRKGDDVKFEEFVAYLIDPH 248
Query: 209 NGRGEEMNEHWRPVHHLCQPCKINYDFIGKEIPNYPRKHETLYEDANLLLREIGVPQKFN 268
R E NEHW+ V+ LC PC I+YD +G K+ETL ED+N +L+ GV
Sbjct: 249 TQREEPFNEHWQTVYSLCHPCHIHYDLVG--------KYETLEEDSNYVLQLAGVSGYL- 299
Query: 269 QNFSFKVKNTEVSFERIKECGPRGGAEAQNRGDRQFNMEIRITNLPKDLPEFL 321
F K+T + E E AE Q + + ++ + N +P +L
Sbjct: 300 -KFPTYAKSTRTTDEMTTEFFQNISAEHQTQLYEVYKLDFLMFNY--SVPNYL 349
>sp|Q9NPF2|CHSTB_HUMAN Carbohydrate sulfotransferase 11 OS=Homo sapiens GN=CHST11 PE=1
SV=1
Length = 352
Score = 195 bits (495), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 108/235 (45%), Positives = 143/235 (60%), Gaps = 15/235 (6%)
Query: 32 NWSLTHFERLEYLTSQCLTYKEDLNKSSVLEDEQVLEHILVDKKHKLLYCYVPKVACTNW 91
N ++ H R + +T C K VL L+H++VD+ H+L+YCYVPKVACTNW
Sbjct: 73 NTAVLHQMRRDQVTDTCRANSATSRKRRVLTPND-LKHLVVDEDHELIYCYVPKVACTNW 131
Query: 92 KRIFLILVGQINTTDPSSIPADVAHKLTMNYK-LSNFSKDEIHHFLESYTKFLFVRHPFE 150
KR+ ++L G+ +DP IPA+ AH ++ N K L+ +S EI+H L+SY KFLFVR PFE
Sbjct: 132 KRLMMVLTGRGKYSDPMEIPANEAH-VSANLKTLNQYSIPEINHRLKSYMKFLFVREPFE 190
Query: 151 RLVSAFHNKLEQSYSSSKYFQSRFGKHIIKTIRTRPTNHSLNHGDDVTFNEFATFLT--K 208
RLVSA+ NK Q Y+ S F R+G IIK R T +L GDDV F EF +L
Sbjct: 191 RLVSAYRNKFTQKYNIS--FHKRYGTKIIKRQRKNATQEALRKGDDVKFEEFVAYLIDPH 248
Query: 209 NGRGEEMNEHWRPVHHLCQPCKINYDFIGKEIPNYPRKHETLYEDANLLLREIGV 263
R E NEHW+ V+ LC PC I+YD +G K+ETL ED+N +L+ GV
Sbjct: 249 TQREEPFNEHWQTVYSLCHPCHIHYDLVG--------KYETLEEDSNYVLQLAGV 295
>sp|Q7T3S3|CHSTB_DANRE Carbohydrate sulfotransferase 11 OS=Danio rerio GN=chst11 PE=2 SV=1
Length = 352
Score = 187 bits (474), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 96/231 (41%), Positives = 140/231 (60%), Gaps = 13/231 (5%)
Query: 34 SLTHFERLEYLTSQCLTYKEDLNKSSVLEDEQVLEHILVDKKHKLLYCYVPKVACTNWKR 93
++ H R + + C + K VL L+H++VD+ H+L+YCYVPKVACTNWKR
Sbjct: 75 AVLHQARRDQVAETCRAHSASSRKRRVLTPSD-LKHLVVDEDHELIYCYVPKVACTNWKR 133
Query: 94 IFLILVGQINTTDPSSIPADVAHKLTMNYKLSNFSKDEIHHFLESYTKFLFVRHPFERLV 153
+ ++L G+ ++P IP++ AH + L+ +S +I+H L++Y KFLFVR PFERLV
Sbjct: 134 VMMVLSGRGKYSNPMEIPSNEAHVPSNLKTLNQYSIPDINHRLKNYLKFLFVREPFERLV 193
Query: 154 SAFHNKLEQSYSSSKYFQSRFGKHIIKTIRTRPTNHSLNHGDDVTFNEFATFLTKNGRGE 213
SA+ NK Y++S F R+G I++ R T +L G DV F EFA +L G
Sbjct: 194 SAYRNKFTLRYNTS--FHKRYGTKIVRRYRKNATTEALQSGADVKFQEFAEYLVDPGTQR 251
Query: 214 E--MNEHWRPVHHLCQPCKINYDFIGKEIPNYPRKHETLYEDANLLLREIG 262
E +NEHW+ V+ LC PC I+YD +G K+ETL +DAN +L+ +G
Sbjct: 252 EAPLNEHWQTVYSLCHPCHIHYDLVG--------KYETLEDDANYVLKLVG 294
>sp|Q8NET6|CHSTD_HUMAN Carbohydrate sulfotransferase 13 OS=Homo sapiens GN=CHST13 PE=2
SV=1
Length = 341
Score = 185 bits (469), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 108/272 (39%), Positives = 142/272 (52%), Gaps = 33/272 (12%)
Query: 36 THFERLEYLTSQCLTYKEDLNKSSVLEDEQVLEHILVDKKHKLLYCYVPKVACTNWKRIF 95
H +R + L S C + + +L+ E L H+LVD H LLYCYVPKVACTNWKR+
Sbjct: 69 VHRQRRDLLNSACSRHSR---RQRLLQPED-LRHVLVDDAHGLLYCYVPKVACTNWKRVL 124
Query: 96 LILVGQINTTDPSSIPADVAHKLTMNYKLSNFSKDEIHHFLESYTKFLFVRHPFERLVSA 155
L L GQ DP +I A AH L++FS EI+ L +Y FLFVR PFERL SA
Sbjct: 125 LALSGQAR-GDPRAISAQEAHAPGRLPSLADFSPAEINRRLRAYLAFLFVREPFERLASA 183
Query: 156 FHNKLEQSYSSSKYFQSRFGKHIIKTIRTRPTNHSLNHGDDVTFNEFATFL--TKNGRGE 213
+ NKL + YS++ FQ R+G I++ +R R + G DV F EF +L + R E
Sbjct: 184 YRNKLARPYSAA--FQRRYGARIVQRLRPRALPDARARGHDVRFAEFLAYLLDPRTRREE 241
Query: 214 EMNEHWRPVHHLCQPCKINYDFIGKEIPNYPRKHETLYEDANLLLREIGVPQKFNQNFSF 273
NEHW H LC PC++ YD +G K ETL EDA +L G
Sbjct: 242 PFNEHWERAHALCHPCRLRYDVVG--------KFETLAEDAAFVLGLAGA---------- 283
Query: 274 KVKNTEVSFERIKECGPRGGAEAQNRGDRQFN 305
+++SF PRG A +++ R F
Sbjct: 284 ----SDLSFPGPPR--PRGAAASRDLAARLFR 309
>sp|Q805E5|CHSTE_DANRE Carbohydrate sulfotransferase 14 OS=Danio rerio GN=chst14 PE=2 SV=1
Length = 367
Score = 165 bits (417), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 85/207 (41%), Positives = 120/207 (57%), Gaps = 17/207 (8%)
Query: 59 SVLEDEQVLEHILVDKKHKLLYCYVPKVACTNWKRIFLILVGQINTTDPSSIPADVAHKL 118
S L+ + +L+HILV+ +H+ LYCYVPKVAC+NWKR+ +L G + D I + H+
Sbjct: 119 SPLQRKTLLQHILVNDEHRFLYCYVPKVACSNWKRVLKVLSGALANVD---IKVKMDHRA 175
Query: 119 TMNYKLSNFSKDEIHHFLESYTKFLFVRHPFERLVSAFHNKLEQSYSSSKYFQSRFGKHI 178
+ + LS+ +EI H L Y KF+FVR P RL+SA+ NK + + +Q ++G I
Sbjct: 176 DLVF-LSDLPPEEIRHRLRHYFKFMFVREPMARLLSAYRNK----FGEIEAYQRKYGAEI 230
Query: 179 IKTIRTRPTNHSLNHGDDVTFNEFATFLTKNGRGEEMNEHWRPVHHLCQPCKINYDFIGK 238
I+ R G+DVTF EF +L E MNEHW P+++LCQPC I YDFIG
Sbjct: 231 IRRYRKGYAKDKKISGNDVTFTEFTRYLVDED-PERMNEHWMPIYNLCQPCAIEYDFIG- 288
Query: 239 EIPNYPRKHETLYEDANLLLREIGVPQ 265
+E L DA+ +L +G PQ
Sbjct: 289 -------SYERLESDASYILERVGAPQ 308
>sp|Q8NCH0|CHSTE_HUMAN Carbohydrate sulfotransferase 14 OS=Homo sapiens GN=CHST14 PE=1
SV=2
Length = 376
Score = 160 bits (405), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 83/206 (40%), Positives = 120/206 (58%), Gaps = 19/206 (9%)
Query: 59 SVLEDEQVLEHILVDKKHKLLYCYVPKVACTNWKRIFLILVGQINTTDPSSIPADVAHKL 118
V + +L HILV +++ LYCYVPKVAC+NWKR+ +L G +++ D + + H+
Sbjct: 130 PVGQRRTLLRHILVSDRYRFLYCYVPKVACSNWKRVMKVLAGVLDSVD---VRLKMDHRS 186
Query: 119 TMNYKLSNFSKDEIHHFLESYTKFLFVRHPFERLVSAFHNKLEQSYSSSKYFQSRFGKHI 178
+ + L++ +EI + L+ Y KFLFVR P ERL+SA+ NK + + +Q R+G I
Sbjct: 187 DLVF-LADLRPEEIRYRLQHYFKFLFVREPLERLLSAYRNK----FGEIREYQQRYGAEI 241
Query: 179 IKTIRTRPTNHSLNHGDDVTFNEFATFLTKNGRGEEMNEHWRPVHHLCQPCKINYDFIGK 238
++ R R GDDVTF EF +L E MNEHW PV+HLCQPC ++YDF+G
Sbjct: 242 VR--RYRAGAGPSPAGDDVTFPEFLRYLVDED-PERMNEHWMPVYHLCQPCAVHYDFVG- 297
Query: 239 EIPNYPRKHETLYEDANLLLREIGVP 264
+E L DAN +L + P
Sbjct: 298 -------SYERLEADANQVLEWVRAP 316
>sp|Q80V53|CHSTE_MOUSE Carbohydrate sulfotransferase 14 OS=Mus musculus GN=Chst14 PE=2
SV=2
Length = 376
Score = 159 bits (402), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 84/205 (40%), Positives = 119/205 (58%), Gaps = 19/205 (9%)
Query: 60 VLEDEQVLEHILVDKKHKLLYCYVPKVACTNWKRIFLILVGQINTTDPSSIPADVAHKLT 119
V + +L HILV +++ LYCYVPKVAC+NWKR+ +L G +N D + + H+
Sbjct: 131 VGQRRTLLRHILVSDRYRFLYCYVPKVACSNWKRVLKVLAGILNNVD---VRLKMDHRSD 187
Query: 120 MNYKLSNFSKDEIHHFLESYTKFLFVRHPFERLVSAFHNKLEQSYSSSKYFQSRFGKHII 179
+ + L++ +EI + L+ Y KFLFVR P ERL+SA+ NK + + +Q R+G I+
Sbjct: 188 LVF-LADLRPEEIRYRLQHYFKFLFVRDPLERLLSAYRNK----FGEIREYQQRYGAEIV 242
Query: 180 KTIRTRPTNHSLNHGDDVTFNEFATFLTKNGRGEEMNEHWRPVHHLCQPCKINYDFIGKE 239
+ R R GDDVTF EF +L E MNEHW PV+HLCQPC ++YDF+G
Sbjct: 243 R--RYRAGAGPSPAGDDVTFPEFLRYLVDED-PEHMNEHWMPVYHLCQPCAVHYDFVG-- 297
Query: 240 IPNYPRKHETLYEDANLLLREIGVP 264
+E L DAN +L + P
Sbjct: 298 ------SYERLEADANQVLEWVRAP 316
>sp|Q8BQ86|CHST8_MOUSE Carbohydrate sulfotransferase 8 OS=Mus musculus GN=Chst8 PE=2 SV=1
Length = 417
Score = 156 bits (395), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 92/245 (37%), Positives = 128/245 (52%), Gaps = 28/245 (11%)
Query: 28 SMNKNW-SL--THFERLEYLTSQCLTYKEDLNKSSVLEDEQVLEHILVDKKHKLLYCYVP 84
+M+ W SL T ER + C Y+ ++ +V + I V+ +H++LYC VP
Sbjct: 134 TMDSRWVSLHQTQQERKRVMREACAKYRASSSRRAVTPRH--VSRIFVEDRHRVLYCEVP 191
Query: 85 KVACTNWKRIFLILVGQINTTDPSSIPADVAHKLTMNY-----KLSNFSKDEIHHFLESY 139
K C+NWKR+ ++L G ++T AD+ H T++Y +L F + I H L +Y
Sbjct: 192 KAGCSNWKRVLMVLAGLASST------ADIQHN-TVHYGSALKRLDTFDRQGIVHRLSTY 244
Query: 140 TKFLFVRHPFERLVSAFHNKLEQSYSSSKYFQSRFGKHIIKTIRTRPTNHSLNHGDDVTF 199
TK LFVR PFERLVSAF +K E S Y+ FGK I+ R + +L G V F
Sbjct: 245 TKMLFVREPFERLVSAFRDKFEHPNS---YYHPVFGKAILARYRANASREALRTGSGVQF 301
Query: 200 NEFATFLTKNGRGEEMNEHWRPVHHLCQPCKINYDFIGKEIPNYPRKHETLYEDANLLLR 259
EF +L R M+ HW V LC PC I+YDF+G K E++ +DAN LR
Sbjct: 302 PEFVQYLLDVHRPVGMDIHWDHVSRLCSPCLIDYDFVG--------KFESMEDDANFFLR 353
Query: 260 EIGVP 264
I P
Sbjct: 354 LIHAP 358
>sp|Q76EC5|CHST9_MOUSE Carbohydrate sulfotransferase 9 OS=Mus musculus GN=Chst9 PE=2 SV=1
Length = 413
Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 87/203 (42%), Positives = 112/203 (55%), Gaps = 13/203 (6%)
Query: 65 QVLEHILVDKKHKLLYCYVPKVACTNWKRIFLILVGQINTTDPSSIPADVAHKLTMNYKL 124
++ I V+ KHK+LYC VPK C+NWKRI ++L G ++ +I D H L
Sbjct: 171 HIVSRIYVEDKHKILYCEVPKAGCSNWKRILMVLNGLASSA--YNISHDTVHYGKHLKTL 228
Query: 125 SNFSKDEIHHFLESYTKFLFVRHPFERLVSAFHNKLEQSYSSSKYFQSRFGKHIIKTIRT 184
+F +H L +YTK +FVR P ERLVSAF +K E S Y+ FGK IIK R
Sbjct: 229 DSFDLKGVHMRLNTYTKAVFVRDPMERLVSAFRDKFEHPNS---YYHPVFGKAIIKKYRP 285
Query: 185 RPTNHSLNHGDDVTFNEFATFLTKNGRGEEMNEHWRPVHHLCQPCKINYDFIGKEIPNYP 244
+ +LN+G V F EFA +L R M+ HW V LC PC INYDF+G
Sbjct: 286 NASAEALNNGSGVKFKEFAYYLLDAHRPVGMDIHWERVSKLCYPCLINYDFVG------- 338
Query: 245 RKHETLYEDANLLLREIGVPQKF 267
K ETL EDAN L+ IG P++
Sbjct: 339 -KFETLGEDANYFLQLIGAPKEL 360
>sp|Q9H2A9|CHST8_HUMAN Carbohydrate sulfotransferase 8 OS=Homo sapiens GN=CHST8 PE=1 SV=2
Length = 424
Score = 154 bits (388), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 88/246 (35%), Positives = 126/246 (51%), Gaps = 28/246 (11%)
Query: 28 SMNKNWSLTHF---ERLEYLTSQCLTYKEDLNKSSVLEDEQVLEHILVDKKHKLLYCYVP 84
+++ W H ER + C Y+ ++ +V + I V+ +H++LYC VP
Sbjct: 141 TLDGRWVSLHRSQQERKRVMQEACAKYRASSSRRAVTPRH--VSRIFVEDRHRVLYCEVP 198
Query: 85 KVACTNWKRIFLILVGQINTTDPSSIPADVAHKLTMNY-----KLSNFSKDEIHHFLESY 139
K C+NWKR+ ++L G ++T AD+ H T++Y +L F + I H L +Y
Sbjct: 199 KAGCSNWKRVLMVLAGLASST------ADIQHN-TVHYGSALKRLDTFDRQGILHRLSTY 251
Query: 140 TKFLFVRHPFERLVSAFHNKLEQSYSSSKYFQSRFGKHIIKTIRTRPTNHSLNHGDDVTF 199
TK LFVR PFERLVSAF +K E S Y+ FGK I+ R + +L G V F
Sbjct: 252 TKMLFVREPFERLVSAFRDKFEHPNS---YYHPVFGKAILARYRANASREALRTGSGVRF 308
Query: 200 NEFATFLTKNGRGEEMNEHWRPVHHLCQPCKINYDFIGKEIPNYPRKHETLYEDANLLLR 259
EF +L R M+ HW V LC PC I+YDF+G K E++ +DAN L
Sbjct: 309 PEFVQYLLDVHRPVGMDIHWDHVSRLCSPCLIDYDFVG--------KFESMEDDANFFLS 360
Query: 260 EIGVPQ 265
I P+
Sbjct: 361 LIRAPR 366
>sp|Q7L1S5|CHST9_HUMAN Carbohydrate sulfotransferase 9 OS=Homo sapiens GN=CHST9 PE=2 SV=2
Length = 443
Score = 146 bits (369), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 95/241 (39%), Positives = 123/241 (51%), Gaps = 18/241 (7%)
Query: 65 QVLEHILVDKKHKLLYCYVPKVACTNWKRIFLILVGQINTTDPSSIPADVAHKLTMNYKL 124
+ I V+ KHK+LYC VPK C+NWKRI ++L G ++ +I + H KL
Sbjct: 201 HTVSRIYVEDKHKILYCEVPKAGCSNWKRILMVLNGLASSA--YNISHNAVHYGKHLKKL 258
Query: 125 SNFSKDEIHHFLESYTKFLFVRHPFERLVSAFHNKLEQSYSSSKYFQSRFGKHIIKTIRT 184
+F I+ L +YTK +FVR P ERLVSAF +K E S Y+ FGK IIK R
Sbjct: 259 DSFDLKGIYTRLNTYTKAVFVRDPMERLVSAFRDKFEHPNS---YYHPVFGKAIIKKYRP 315
Query: 185 RPTNHSLNHGDDVTFNEFATFLTKNGRGEEMNEHWRPVHHLCQPCKINYDFIGKEIPNYP 244
+L +G V F EF +L + R M+ HW V LC PC INYDF+G
Sbjct: 316 NACEEALINGSGVKFKEFIHYLLDSHRPVGMDIHWEKVSKLCYPCLINYDFVG------- 368
Query: 245 RKHETLYEDANLLLREIGVPQKFN-QNFSFKVKNTEVSFERIKECGPRGGAEAQNRGDRQ 303
K ETL EDAN L+ IG P++ NF K+ S ER R + R +RQ
Sbjct: 369 -KFETLEEDANYFLQMIGAPKELKFPNF----KDRHSSDERTNAQVVRQYLKDLTRTERQ 423
Query: 304 F 304
Sbjct: 424 L 424
>sp|Q5XHM7|CHSTC_XENLA Carbohydrate sulfotransferase 12 OS=Xenopus laevis GN=chst12 PE=2
SV=2
Length = 420
Score = 136 bits (342), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 86/221 (38%), Positives = 118/221 (53%), Gaps = 31/221 (14%)
Query: 67 LEHILVDKKHKLLYCYVPKVACTNWKRIFLILVGQ------INTTDPSSIPADVAHK--- 117
L+H++VD +H ++YCYVPKVACTNWKR+ ++L + DP IP + H
Sbjct: 159 LDHLIVDDRHGIIYCYVPKVACTNWKRVMIVLSESLLDKKGVPYQDPLLIPREDVHNTSS 218
Query: 118 -LTMN---YKLSNFSKDEIHHFLESYTKFLFVRHPFERLVSAFHNKLEQSYSSSKYFQSR 173
LT N + FS+ + L+ YTKFLFVR PF RL+SAF +K E ++ F
Sbjct: 219 HLTFNKFWRRYGKFSRHMMKIKLKKYTKFLFVRDPFVRLISAFRSKFEL---ENEDFYRS 275
Query: 174 FGKHII----KTIRTRPT-NHSLNHGDDVTFNEFATFLTKNGRGEE--MNEHWRPVHHLC 226
F I+ T R T + + G +F++F +L E+ NEHWR V+ LC
Sbjct: 276 FAVPILTRFSNTTRVPDTVGEAFSSGTMPSFSQFIQYLLDPQTEEQKPFNEHWRQVYRLC 335
Query: 227 QPCKINYDFIGKEIPNYPRKHETLYEDANLLLREIGVPQKF 267
PC+I YDFIG K ETL ED LLLR++ + F
Sbjct: 336 HPCQIEYDFIG--------KLETLGEDTALLLRQLNLDTLF 368
>sp|Q9NRB3|CHSTC_HUMAN Carbohydrate sulfotransferase 12 OS=Homo sapiens GN=CHST12 PE=1
SV=2
Length = 414
Score = 130 bits (326), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 86/236 (36%), Positives = 120/236 (50%), Gaps = 31/236 (13%)
Query: 67 LEHILVDKKHKLLYCYVPKVACTNWKRIFLILVGQI-----NTTDPSSIPADVAHK---- 117
L H++VD +H +YCYVPKVACTNWKR+ ++L G + DP IP + H
Sbjct: 154 LSHLIVDDRHGAIYCYVPKVACTNWKRVMIVLSGSLLHRGAPYRDPLRIPREHVHNASAH 213
Query: 118 LTMNYKLSNFSKDEIHHF---LESYTKFLFVRHPFERLVSAFHNKLEQSYSSSKYFQSRF 174
LT N + K H L+ YTKFLFVR PF RL+SAF +K E ++ F +F
Sbjct: 214 LTFNKFWRRYGKLSRHLMKVKLKKYTKFLFVRDPFVRLISAFRSKFEL---ENEEFYRKF 270
Query: 175 GKHIIK-----TIRTRPTNHSLNHGDDVTFNEFATFL--TKNGRGEEMNEHWRPVHHLCQ 227
+++ T + G V+F F +L + NEHWR V+ LC
Sbjct: 271 AVPMLRLYANHTSLPASAREAFRAGLKVSFANFIQYLLDPHTEKLAPFNEHWRQVYRLCH 330
Query: 228 PCKINYDFIGKEIPNYPRKHETLYEDANLLLREIGVPQKFNQNFSFKVKNTEVSFE 283
PC+I+YDF+GK ETL EDA LL+ + V ++ S++ T S+E
Sbjct: 331 PCQIDYDFVGKL--------ETLDEDAAQLLQLLQVDRQLRFPPSYR-NRTASSWE 377
>sp|Q99LL3|CHSTC_MOUSE Carbohydrate sulfotransferase 12 OS=Mus musculus GN=Chst12 PE=2
SV=2
Length = 419
Score = 129 bits (323), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 82/216 (37%), Positives = 115/216 (53%), Gaps = 30/216 (13%)
Query: 67 LEHILVDKKHKLLYCYVPKVACTNWKRIFLILVGQI-----NTTDPSSIPADVAHK---- 117
L H++VD +H ++YCYVPKVACTNWKR+ ++L + DP IP + H
Sbjct: 159 LNHLIVDDRHGVIYCYVPKVACTNWKRVMIVLSESLLDRGSPYRDPLDIPREHVHNTSTH 218
Query: 118 LTMN---YKLSNFSKDEIHHFLESYTKFLFVRHPFERLVSAFHNKLEQSYSSSKYFQSRF 174
LT N + FS+ + L+ YTKFLFVR PF RL+SAF +K E ++ F +F
Sbjct: 219 LTFNKFWRRYGKFSRHLMKVKLKKYTKFLFVRDPFVRLISAFRSKFEL---ENEEFYRKF 275
Query: 175 GKHIIK-----TIRTRPTNHSLNHGDDVTFNEFATFL--TKNGRGEEMNEHWRPVHHLCQ 227
+++ T + + + G V+F F +L + NEHWR V+ LC
Sbjct: 276 AVPMLRLYANHTSLPASVSEAFSAGLKVSFANFIQYLLDPHTEKLAPFNEHWRQVYRLCH 335
Query: 228 PCKINYDFIGKEIPNYPRKHETLYEDANLLLREIGV 263
PC+I+YDF+GK ETL EDA LLR + V
Sbjct: 336 PCQIDYDFVGKL--------ETLDEDAAQLLRFLKV 363
>sp|Q6AXM1|CHSTA_DANRE Carbohydrate sulfotransferase 10 OS=Danio rerio GN=chst10 PE=2 SV=1
Length = 365
Score = 115 bits (289), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 123/241 (51%), Gaps = 22/241 (9%)
Query: 32 NWSLTHFERLEYLTSQCLTYKEDLNKSSVLEDEQVLEHILVDKKHKLLYCYVPKVACTNW 91
+W L + +RLE L++ C + N + + VL+ I V KHK+L+C PKV T W
Sbjct: 81 DWHLVNEKRLEQLSTVC-SNSSIWNLTHTTVRKFVLDRIFVCDKHKILFCQTPKVGNTQW 139
Query: 92 KRIFLILVGQINTTDPSSIPADVAHKLTMNY--KLSNFSKDEIHHFLESYTKFLFVRHPF 149
K++ ++L G+ + + +IP ++ H N +LS+ + EIH L SY KF VR PF
Sbjct: 140 KKVLIVLNGKFSKVE--AIPENLVHDHERNGLPRLSSMTDTEIHQRLNSYFKFFIVRDPF 197
Query: 150 ERLVSAFHNKLEQSYSSSKYFQSRFGKHIIKTIRTRPTNHSLNHGDDVTFNEFATFLT-K 208
ERL+SAF +K ++ +++ I++ + R ++H + + F +F +L K
Sbjct: 198 ERLISAFKDKFVKNPRFEPWYKHDIAPAIVR--KYRRSHHDDSESVGLRFEDFVRYLGDK 255
Query: 209 NGRGEEMNE------HWRPVHHLCQPCKINYDFIGKEIPNYPRKHETLYEDANLLLREIG 262
GR + HW LC PC I+Y+ +G HETL DA +L+ G
Sbjct: 256 TGRQHLDRQFGDHIIHWLTYAELCAPCDISYNVVG--------HHETLELDAPYILKSAG 307
Query: 263 V 263
+
Sbjct: 308 I 308
>sp|Q6GNS1|CHSTA_XENLA Carbohydrate sulfotransferase 10 OS=Xenopus laevis GN=chst10 PE=2
SV=1
Length = 355
Score = 115 bits (288), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 119/237 (50%), Gaps = 23/237 (9%)
Query: 35 LTHFERLEYLTSQCLTYKEDLNKSSVLEDEQVLEHILVDKKHKLLYCYVPKVACTNWKRI 94
L H ER E L S C + N S + VL+ I V KH++L+C PKV T WK++
Sbjct: 78 LLHKERTELLRSVC-SNGSLRNLSHTAISKFVLDRIFVSDKHRILFCQTPKVGNTQWKKV 136
Query: 95 FLILVGQINTTDPSSIPADVAHKLTMNY--KLSNFSKDEIHHFLESYTKFLFVRHPFERL 152
++L G ++ + IP +V H N +LS+FS ++H L SY KF VR PFERL
Sbjct: 137 LIVLNGAFSSIE--EIPENVVHDHEKNGLPRLSSFSAQDVHERLNSYFKFFIVRDPFERL 194
Query: 153 VSAFHNKLEQSYSSSKYFQSRFGKHIIKTIRTRPTNHSLNHGDDVTFNEFATFL-TKNGR 211
+SAF +K + +++ II+ R + + G + F +F +L N R
Sbjct: 195 ISAFKDKFVHNPRFEPWYKHDIAPAIIRKYR---KDRRESRG-GLQFQDFVRYLGDPNHR 250
Query: 212 GEEMNE-----HWRPVHHLCQPCKINYDFIGKEIPNYPRKHETLYEDANLLLREIGV 263
++ HW LC PC+I+Y+ IG HETL +DA +LRE G+
Sbjct: 251 FLDLQFGDHIIHWVTYVELCAPCEIDYNVIG--------HHETLEDDAPYILREAGI 299
>sp|O43529|CHSTA_HUMAN Carbohydrate sulfotransferase 10 OS=Homo sapiens GN=CHST10 PE=1
SV=1
Length = 356
Score = 113 bits (282), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 120/239 (50%), Gaps = 28/239 (11%)
Query: 35 LTHFERLEYLTSQCLTYKEDL--NKSSVLEDEQVLEHILVDKKHKLLYCYVPKVACTNWK 92
L + ERLE + + C ++D N S + VL+ I V KHK+L+C PKV T WK
Sbjct: 79 LVYMERLELIRNVC---RDDALKNLSHTPVSKFVLDRIFVCDKHKILFCQTPKVGNTQWK 135
Query: 93 RIFLILVGQINTTDPSSIPADVAHKLTMN--YKLSNFSKDEIHHFLESYTKFLFVRHPFE 150
++ ++L G ++ + IP +V H N +LS+FS EI L++Y KF VR PFE
Sbjct: 136 KVLIVLNGAFSSIE--EIPENVVHDHEKNGLPRLSSFSDAEIQKRLKTYFKFFIVRDPFE 193
Query: 151 RLVSAFHNKLEQSYSSSKYFQSRFGKHIIKTIRTRPTNHSLNHGDDVTFNEFATFL-TKN 209
RL+SAF +K + +++ II+ R N + G + F +F +L N
Sbjct: 194 RLISAFKDKFVHNPRFEPWYRHEIAPGIIRKYR---RNRTETRG--IQFEDFVRYLGDPN 248
Query: 210 GRGEEMNE-----HWRPVHHLCQPCKINYDFIGKEIPNYPRKHETLYEDANLLLREIGV 263
R ++ HW LC PC+I Y IG HETL +DA +L+E G+
Sbjct: 249 HRWLDLQFGDHIIHWVTYVELCAPCEIMYSVIG--------HHETLEDDAPYILKEAGI 299
>sp|Q5RBZ6|CHSTA_PONAB Carbohydrate sulfotransferase 10 OS=Pongo abelii GN=CHST10 PE=2
SV=1
Length = 356
Score = 112 bits (280), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 120/239 (50%), Gaps = 28/239 (11%)
Query: 35 LTHFERLEYLTSQCLTYKEDL--NKSSVLEDEQVLEHILVDKKHKLLYCYVPKVACTNWK 92
L + ERLE + + C ++D N S + VL+ I V KHK+L+C PKV T WK
Sbjct: 79 LVYMERLELIRNVC---RDDALKNLSHTPVSKFVLDRIFVCDKHKILFCQTPKVGNTQWK 135
Query: 93 RIFLILVGQINTTDPSSIPADVAHKLTMN--YKLSNFSKDEIHHFLESYTKFLFVRHPFE 150
++ ++L G + + IP +V H N +LS+FS EI L++Y KF VR PFE
Sbjct: 136 KVLIVLNGAFPSIE--EIPENVVHDHEKNGLPRLSSFSDAEIQKRLKTYFKFFIVRDPFE 193
Query: 151 RLVSAFHNKLEQSYSSSKYFQSRFGKHIIKTIRTRPTNHSLNHGDDVTFNEFATFL-TKN 209
RL+SAF +K + +++ II+ R N + + G + F +F +L N
Sbjct: 194 RLISAFKDKFVHNPRFEPWYRHEIAPGIIRKYR---RNRTESRG--IQFEDFVRYLGDPN 248
Query: 210 GRGEEMNE-----HWRPVHHLCQPCKINYDFIGKEIPNYPRKHETLYEDANLLLREIGV 263
R ++ HW LC PC+I Y IG HETL +DA +L+E G+
Sbjct: 249 HRWLDLQFGDHIIHWVTYVELCAPCEIMYSVIG--------HHETLEDDAPYILKEAGI 299
>sp|Q5ZIE4|CHSTA_CHICK Carbohydrate sulfotransferase 10 OS=Gallus gallus GN=CHST10 PE=2
SV=1
Length = 358
Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 117/238 (49%), Gaps = 26/238 (10%)
Query: 35 LTHFERLEYLTSQCL-TYKEDLNKSSVLEDEQVLEHILVDKKHKLLYCYVPKVACTNWKR 93
L H ERLE L + C T +L+ ++V + VL+ I V KHK+L+C PKV T WK+
Sbjct: 81 LVHMERLELLRNVCRDTALRNLSHTAV--SKFVLDRIFVCDKHKILFCQTPKVGNTQWKK 138
Query: 94 IFLILVGQINTTDPSSIPADVAHKLTMNY--KLSNFSKDEIHHFLESYTKFLFVRHPFER 151
+ ++L G ++ D IP + H N +LS+FS EI L Y KF VR PFER
Sbjct: 139 VLIVLNGAYSSID--EIPESIVHDHEKNGLPRLSSFSDSEIKKRLNLYFKFFIVRDPFER 196
Query: 152 LVSAFHNKLEQSYSSSKYFQSRFGKHIIKTIRTRPTNHSLNHGDDVTFNEFATFL-TKNG 210
L+SAF +K + +++ II+ R N G + F +F +L N
Sbjct: 197 LISAFKDKFVHNPRFEPWYRHEIAPSIIRKYR---RNRMETKG--LQFEDFVRYLGDPNH 251
Query: 211 RGEEMNE-----HWRPVHHLCQPCKINYDFIGKEIPNYPRKHETLYEDANLLLREIGV 263
R ++ HW LC PC+I Y IG HETL +DA +L+ G+
Sbjct: 252 RWLDVQFGDHIIHWVTYVELCAPCEITYSVIG--------HHETLEDDAPYILKAAGI 301
>sp|O54702|CHSTA_RAT Carbohydrate sulfotransferase 10 OS=Rattus norvegicus GN=Chst10
PE=2 SV=1
Length = 356
Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 118/239 (49%), Gaps = 30/239 (12%)
Query: 36 THFERLEYLTSQCLTYKEDL--NKSSVLEDEQVLEHILVDKKHKLLYCYVPKVACTNWKR 93
+ ERLE + + C KE+ N S + VL+ I V KHK+L+C PKV T WK+
Sbjct: 80 VYLERLELIRNAC---KEEALRNLSHTEVSKFVLDRIFVCDKHKILFCQTPKVGNTQWKK 136
Query: 94 IFLILVGQINTTDPSSIPADVAHKLTMNY--KLSNFSKDEIHHFLESYTKFLFVRHPFER 151
+ ++L G ++ + IP +V H N +LS+FSK I L++Y KF VR PFER
Sbjct: 137 VLIVLNGAFSSIE--EIPENVVHDHEKNGLPRLSSFSKIGIQKRLKTYFKFFIVRDPFER 194
Query: 152 LVSAFHNKLEQSYSSSKYFQSRFGKHIIKTIRTRPTNHSLNHGDDVTFNEFATFLTKNGR 211
L+SAF +K + +++ II+ R N + G + F +F +L R
Sbjct: 195 LISAFKDKFVHNPRFEPWYRHEIAPGIIRKYR---KNRTETRG--IQFEDFVRYLGDPNR 249
Query: 212 -------GEEMNEHWRPVHHLCQPCKINYDFIGKEIPNYPRKHETLYEDANLLLREIGV 263
G+ + HW LC PC+I Y IG HETL DA +L+E G+
Sbjct: 250 RWLDLQFGDHII-HWVTYVKLCAPCEIKYSVIG--------HHETLEADAPYILKEAGI 299
>sp|Q6PGK7|CHSTA_MOUSE Carbohydrate sulfotransferase 10 OS=Mus musculus GN=Chst10 PE=2
SV=2
Length = 356
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 118/239 (49%), Gaps = 30/239 (12%)
Query: 36 THFERLEYLTSQCLTYKEDL--NKSSVLEDEQVLEHILVDKKHKLLYCYVPKVACTNWKR 93
+ ERLE + + C KE+ N S + VL+ I V KHK+L+C PKV T WK+
Sbjct: 80 VYLERLELIRNTC---KEEALRNLSHTEVSKFVLDRIFVCDKHKILFCQTPKVGNTQWKK 136
Query: 94 IFLILVGQINTTDPSSIPADVAHKLTMN--YKLSNFSKDEIHHFLESYTKFLFVRHPFER 151
+ ++L G ++ + IP +V H N +LS+FSK I L++Y KF VR PFER
Sbjct: 137 VLIVLNGAFSSIE--EIPENVVHDHEKNGLPRLSSFSKIGIQKRLKTYFKFFIVRDPFER 194
Query: 152 LVSAFHNKLEQSYSSSKYFQSRFGKHIIKTIRTRPTNHSLNHGDDVTFNEFATFLTKNGR 211
L+SAF +K + +++ II+ R N + G + F +F +L R
Sbjct: 195 LISAFKDKFVHNPRFEPWYRHEIAPGIIRKYR---KNRTETRG--IQFEDFVRYLGDPNR 249
Query: 212 -------GEEMNEHWRPVHHLCQPCKINYDFIGKEIPNYPRKHETLYEDANLLLREIGV 263
G+ + HW LC PC+I Y +G HETL DA +L+E G+
Sbjct: 250 RWLDLQFGDHII-HWVTYVELCAPCEIKYSVVG--------HHETLEADAPYILKEAGI 299
>sp|P56726|SMO_MOUSE Smoothened homolog OS=Mus musculus GN=Smo PE=1 SV=2
Length = 793
Score = 75.9 bits (185), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
Query: 492 RLKRWQGLKYIPKCWAVIQSFLCALYMPKCEDNVVSVPSQEVCKLLSGPCRIVAQELS-P 550
+L W GL+ P+CWAVIQ LCA+YMPKCE++ V +PS+ +C+ GPC IV +E P
Sbjct: 109 KLVLWSGLRNAPRCWAVIQPLLCAVYMPKCENDRVELPSRTLCQATRGPCAIVERERGWP 168
Query: 551 EF 552
+F
Sbjct: 169 DF 170
>sp|P97698|SMO_RAT Smoothened homolog OS=Rattus norvegicus GN=Smo PE=2 SV=1
Length = 793
Score = 75.9 bits (185), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 491 ERLKRWQGLKYIPKCWAVIQSFLCALYMPKCEDNVVSVPSQEVCKLLSGPCRIVAQELS- 549
+L W GL+ P+CWAVIQ LCA+YMPKCE++ V +PS+ +C+ GPC IV +E
Sbjct: 108 SKLVLWSGLRNAPRCWAVIQPLLCAVYMPKCENDRVELPSRTLCQATRGPCAIVERERGW 167
Query: 550 PEF 552
P+F
Sbjct: 168 PDF 170
>sp|Q99835|SMO_HUMAN Smoothened homolog OS=Homo sapiens GN=SMO PE=1 SV=1
Length = 787
Score = 75.9 bits (185), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
Query: 492 RLKRWQGLKYIPKCWAVIQSFLCALYMPKCEDNVVSVPSQEVCKLLSGPCRIVAQELS-P 550
+L W GL+ P+CWAVIQ LCA+YMPKCE++ V +PS+ +C+ GPC IV +E P
Sbjct: 105 KLVLWSGLRNAPRCWAVIQPLLCAVYMPKCENDRVELPSRTLCQATRGPCAIVERERGWP 164
Query: 551 EF 552
+F
Sbjct: 165 DF 166
>sp|O42224|SMO_CHICK Smoothened homolog (Fragment) OS=Gallus gallus GN=SMO PE=2 SV=1
Length = 794
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 492 RLKRWQGLKYIPKCWAVIQSFLCALYMPKCEDNVVSVPSQEVCKLLSGPCRIVAQELS-P 550
+L W GL+ P+CW VIQ LCA+YMPKCED V +PSQ +C+ PC IV +E P
Sbjct: 75 KLLLWSGLRNAPRCWDVIQPLLCAVYMPKCEDGQVELPSQTLCQATRAPCTIVERERGWP 134
Query: 551 EF 552
+F
Sbjct: 135 DF 136
>sp|P91682|SMO_DROME Protein smoothened OS=Drosophila melanogaster GN=smo PE=1 SV=1
Length = 1036
Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 42/58 (72%), Gaps = 4/58 (6%)
Query: 491 ERLKRWQGLKYIPKCWAVIQSFLCALYMPKCE----DNVVSVPSQEVCKLLSGPCRIV 544
++L + LK++PKCWA IQ FLCA++ PKCE +++V +PS E+C++ PCRI+
Sbjct: 125 DKLNDYYALKHVPKCWAAIQPFLCAVFKPKCEKINGEDMVYLPSYEMCRITMEPCRIL 182
>sp|B4RSW4|RL25_ALTMD 50S ribosomal protein L25 OS=Alteromonas macleodii (strain DSM
17117 / Deep ecotype) GN=rplY PE=3 SV=1
Length = 210
Score = 37.7 bits (86), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 307 EIRITNLPKDLPEFLNESKSAVEDAVLEALDNKYNKSDISSVFLSKDREAGAIAVTSEPF 366
EI +T PKDLPEF+ +AVE L + + +SSV L+K+ EA +AV +
Sbjct: 133 EIEVTCQPKDLPEFIEVDMAAVEMGQTVHLSDLTLPAGVSSVELAKNDEAHDLAVVT--- 189
Query: 367 YKDLLKLGEYDKNTLESG 384
K K E D++ E+
Sbjct: 190 VKPAPKAAETDEDGEEAA 207
>sp|P08775|RPB1_MOUSE DNA-directed RNA polymerase II subunit RPB1 OS=Mus musculus
GN=Polr2a PE=1 SV=3
Length = 1970
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 17/120 (14%)
Query: 210 GRGEEMNEHWRPVHHLCQPCK-----INYDFIGKEIPNYPRKHETLYEDANLLLREIGVP 264
G M + RP+ L Q K + + +GK + R + D NL + ++GVP
Sbjct: 324 GLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSART--VITPDPNLSIDQVGVP 381
Query: 265 QKFNQNFSFKVKNTEVSFERIKECGPRGGAE-------AQNRGDRQFNMEIRITNLPKDL 317
+ N +F T + +R++E RG ++ ++ GDR +++R P DL
Sbjct: 382 RSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDR---IDLRFHPKPSDL 438
>sp|P24928|RPB1_HUMAN DNA-directed RNA polymerase II subunit RPB1 OS=Homo sapiens
GN=POLR2A PE=1 SV=2
Length = 1970
Score = 35.4 bits (80), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 17/120 (14%)
Query: 210 GRGEEMNEHWRPVHHLCQPCK-----INYDFIGKEIPNYPRKHETLYEDANLLLREIGVP 264
G M + RP+ L Q K + + +GK + R + D NL + ++GVP
Sbjct: 324 GLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSART--VITPDPNLSIDQVGVP 381
Query: 265 QKFNQNFSFKVKNTEVSFERIKECGPRGGAE-------AQNRGDRQFNMEIRITNLPKDL 317
+ N +F T + +R++E RG ++ ++ GDR +++R P DL
Sbjct: 382 RSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDR---IDLRFHPKPSDL 438
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 210,003,116
Number of Sequences: 539616
Number of extensions: 9073652
Number of successful extensions: 25328
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 25228
Number of HSP's gapped (non-prelim): 62
length of query: 568
length of database: 191,569,459
effective HSP length: 123
effective length of query: 445
effective length of database: 125,196,691
effective search space: 55712527495
effective search space used: 55712527495
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)