RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5945
         (568 letters)



>d1ijxa_ a.141.1.1 (A:) Secreted Frizzled-related protein 3
           (SFRP-3;fzb) {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 125

 Score = 37.8 bits (87), Expect = 6e-04
 Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 7/57 (12%)

Query: 505 CWAVIQSFLCALYMPKCEDNVVSV---PSQEVCKLLSGPCRIVAQELSPE----FNC 554
           C   +  FLCA+Y P C  +       P + VC+     C  +  +          C
Sbjct: 48  CSPDLLFFLCAMYAPICTIDFQHEPIKPCKSVCERARQGCEPILIKYRHSWPESLAC 104


>d1ijya_ a.141.1.1 (A:) Frizzled 8 (FZ8) {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 122

 Score = 35.9 bits (82), Expect = 0.003
 Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 14/68 (20%)

Query: 505 CWAVIQSFLCALYMPKCEDNVVSV--PSQEVCKLLSGPCRIVAQELS------------P 550
           C   ++ FLC++Y P C ++      P + VC+     C  + ++              P
Sbjct: 49  CSPDLKFFLCSMYTPICLEDYKKPLPPCRSVCERAKAGCAPLMRQYGFAWPDRMRCDRLP 108

Query: 551 EFNCQNGT 558
           E    +  
Sbjct: 109 EQGNPDTL 116


>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1
           {House-dust mite (Dermatophagoides pteronyssinus)
           [TaxId: 6956]}
          Length = 302

 Score = 30.0 bits (66), Expect = 0.74
 Identities = 14/81 (17%), Positives = 33/81 (40%), Gaps = 7/81 (8%)

Query: 157 HNKLEQSYSSSKYFQSRFG--KHIIKTIRTRPTNHSLNHGDDVTFNEFATFLTKNGRGEE 214
            NK   SY++ +  ++        +K +++     ++NH  D++ +EF      +    E
Sbjct: 12  FNK---SYATFEDEEAARKNFLESVKYVQSN--GGAINHLSDLSLDEFKNRFLMSAEAFE 66

Query: 215 MNEHWRPVHHLCQPCKINYDF 235
             +    ++     C IN + 
Sbjct: 67  HLKTQFDLNAETNACSINGNA 87


>d1j8ba_ d.222.1.1 (A:) Hypothetical protein HI0442 {Haemophilus
           influenzae [TaxId: 727]}
          Length = 92

 Score = 27.3 bits (61), Expect = 1.4
 Identities = 5/27 (18%), Positives = 14/27 (51%)

Query: 318 PEFLNESKSAVEDAVLEALDNKYNKSD 344
           P  + + K  +ED +  A ++   +++
Sbjct: 53  PSLMEDDKEMLEDLIAAAFNDAVRRAE 79


>d1jnsa_ d.26.1.1 (A:) Parvulin 10 (rotamase C) {Escherichia coli
           [TaxId: 562]}
          Length = 92

 Score = 26.1 bits (57), Expect = 3.6
 Identities = 9/54 (16%), Positives = 16/54 (29%), Gaps = 3/54 (5%)

Query: 127 FSKDEIHHFLESYTKFLFVRHPFERLVSAFHNKLEQSYSSSKYFQSRFGKHIIK 180
            S            +F   +         F   + +    +    ++FG HIIK
Sbjct: 37  HSICPSGKRGGDLGEFRQGQMVPAFDKVVFSCPVLEP---TGPLHTQFGYHIIK 87


>d1bo1a_ d.143.1.2 (A:) Phosphatidylinositol phosphate kinase
           IIbeta, PIPK IIbeta {Human (Homo sapiens) [TaxId: 9606]}
          Length = 383

 Score = 27.3 bits (60), Expect = 5.0
 Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 4/59 (6%)

Query: 154 SAFHNKLEQSYSSSKYFQSRFGKHIIKTIRTRPTNHSLNHGDD----VTFNEFATFLTK 208
           SA  N   Q    +++  +   + +IKT+ +       N        +      T L +
Sbjct: 91  SAPINSDSQGRCGTRFLTTYDRRFVIKTVSSEDVAEMHNILKKYHQFIVECHGNTLLPQ 149


>d1eq3a_ d.26.1.1 (A:) Parvulin {Human (Homo sapiens), hpar14
           [TaxId: 9606]}
          Length = 96

 Score = 25.8 bits (56), Expect = 5.2
 Identities = 10/63 (15%), Positives = 22/63 (34%)

Query: 123 KLSNFSKDEIHHFLESYTKFLFVRHPFERLVSAFHNKLEQSYSSSKYFQSRFGKHIIKTI 182
              +  K      L   T+   V    E   +   + +++   +    +++FG HII   
Sbjct: 34  AQYSEDKARQGGDLGWMTRGSMVGPFQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMVE 93

Query: 183 RTR 185
             +
Sbjct: 94  GRK 96


>d2dyaa1 d.58.6.1 (A:6-158) Nucleoside diphosphate kinase, NDK
           {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
          Length = 153

 Score = 26.2 bits (57), Expect = 7.1
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 231 INYDFIGKEIPNYPRKHETLYE 252
           I+  F  +E+  YPR  +  Y+
Sbjct: 131 ISLFFKPEELFEYPRAADWFYK 152


>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide
           acetyltransferase {Neisseria meningitidis [TaxId: 487]}
          Length = 81

 Score = 25.1 bits (55), Expect = 7.6
 Identities = 9/60 (15%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 432 PTLARVVEAEVSRNATVEVSEVVEE---VVFVEAEALEVEIAVEVEIAVEVLEVAEGVDV 488
           P +      ++     V V + +     ++ +E +   +++  EV   V+ ++V  G  +
Sbjct: 8   PDIGGHENVDIIA-VEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKI 66


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.134    0.391 

Gapped
Lambda     K      H
   0.267   0.0595    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,116,426
Number of extensions: 103752
Number of successful extensions: 294
Number of sequences better than 10.0: 1
Number of HSP's gapped: 294
Number of HSP's successfully gapped: 19
Length of query: 568
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 478
Effective length of database: 1,171,896
Effective search space: 560166288
Effective search space used: 560166288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.3 bits)