Query psy5946
Match_columns 63
No_of_seqs 102 out of 206
Neff 4.6
Searched_HMMs 46136
Date Fri Aug 16 22:30:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5946.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5946hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1624|consensus 99.5 4.9E-14 1.1E-18 102.8 5.9 55 2-56 158-212 (290)
2 PF00573 Ribosomal_L4: Ribosom 99.4 2.4E-13 5.3E-18 93.0 3.4 54 2-55 90-145 (192)
3 PRK05319 rplD 50S ribosomal pr 99.3 2.9E-12 6.3E-17 88.6 6.8 53 2-55 104-156 (205)
4 PRK14547 rplD 50S ribosomal pr 99.3 7.8E-12 1.7E-16 91.2 6.1 56 2-57 105-161 (298)
5 CHL00147 rpl4 ribosomal protei 99.2 3.3E-11 7.1E-16 84.3 6.5 52 2-55 110-165 (215)
6 PRK14907 rplD 50S ribosomal pr 99.2 7.9E-11 1.7E-15 86.2 6.4 51 2-53 194-246 (295)
7 COG0088 RplD Ribosomal protein 99.0 7.6E-10 1.7E-14 77.6 5.9 57 2-58 106-164 (214)
8 TIGR03672 rpl4p_arch 50S ribos 98.9 2.1E-09 4.6E-14 77.1 6.4 43 2-45 108-164 (251)
9 PRK04042 rpl4lp 50S ribosomal 98.9 2.1E-09 4.6E-14 77.2 6.0 43 2-45 108-165 (254)
10 PLN00185 60S ribosomal protein 98.0 2.2E-05 4.9E-10 59.8 6.4 43 2-45 123-180 (405)
11 PTZ00428 60S ribosomal protein 97.8 5.6E-05 1.2E-09 57.3 6.4 44 2-46 118-176 (381)
12 COG0419 SbcC ATPase involved i 77.8 3 6.5E-05 34.0 3.5 57 2-58 823-885 (908)
13 cd03231 ABC_CcmA_heme_exporter 75.3 6.9 0.00015 25.7 4.2 54 2-59 131-187 (201)
14 cd03228 ABCC_MRP_Like The MRP 73.8 13 0.00027 23.8 5.1 49 2-53 102-152 (171)
15 cd03254 ABCC_Glucan_exporter_l 69.3 16 0.00035 24.1 4.9 50 2-54 145-196 (229)
16 PRK14249 phosphate ABC transpo 67.7 17 0.00038 24.5 4.9 50 2-54 153-204 (251)
17 PRK14263 phosphate ABC transpo 67.7 16 0.00034 25.2 4.8 50 2-54 155-206 (261)
18 cd03271 ABC_UvrA_II The excisi 67.5 11 0.00024 26.8 4.0 54 2-55 175-231 (261)
19 PRK14245 phosphate ABC transpo 66.1 20 0.00044 24.2 5.0 50 2-54 152-203 (250)
20 cd03369 ABCC_NFT1 Domain 2 of 66.1 21 0.00046 23.3 5.0 50 2-54 131-182 (207)
21 cd03288 ABCC_SUR2 The SUR doma 65.9 17 0.00037 24.8 4.6 49 2-53 162-212 (257)
22 PRK10536 hypothetical protein; 63.6 14 0.0003 26.9 4.0 36 17-55 176-211 (262)
23 PF13604 AAA_30: AAA domain; P 63.0 3.2 6.9E-05 27.7 0.6 43 15-59 91-134 (196)
24 cd03249 ABC_MTABC3_MDL1_MDL2 M 62.3 27 0.00058 23.2 5.0 50 2-54 145-196 (238)
25 PRK14267 phosphate ABC transpo 62.2 19 0.00042 24.2 4.3 49 3-54 156-206 (253)
26 cd03244 ABCC_MRP_domain2 Domai 61.8 24 0.00053 23.1 4.7 49 2-53 145-195 (221)
27 cd03278 ABC_SMC_barmotin Barmo 61.7 25 0.00055 23.4 4.7 54 3-56 120-176 (197)
28 cd03221 ABCF_EF-3 ABCF_EF-3 E 60.8 28 0.00062 21.8 4.7 48 2-54 76-125 (144)
29 cd03253 ABCC_ATM1_transporter 60.6 29 0.00062 23.0 4.9 49 2-53 143-193 (236)
30 COG1618 Predicted nucleotide k 60.4 23 0.00049 24.9 4.4 43 9-52 92-135 (179)
31 cd03223 ABCD_peroxisomal_ALDP 59.8 35 0.00077 21.8 5.1 49 2-55 97-147 (166)
32 PRK14265 phosphate ABC transpo 59.7 27 0.00058 24.2 4.8 49 2-53 167-217 (274)
33 PF13419 HAD_2: Haloacid dehal 59.7 24 0.00053 21.0 4.1 37 19-55 122-159 (176)
34 cd03251 ABCC_MsbA MsbA is an e 59.6 31 0.00068 22.8 4.9 49 2-53 144-194 (234)
35 cd03215 ABC_Carb_Monos_II This 59.2 20 0.00044 23.1 3.9 49 2-53 110-161 (182)
36 cd03247 ABCC_cytochrome_bd The 58.5 35 0.00076 21.8 4.9 50 2-54 104-155 (178)
37 PRK13539 cytochrome c biogenes 57.9 21 0.00045 23.5 3.8 51 2-55 133-186 (207)
38 PRK14256 phosphate ABC transpo 57.8 24 0.00053 23.8 4.2 51 2-55 154-206 (252)
39 cd03289 ABCC_CFTR2 The CFTR su 57.4 34 0.00073 24.2 5.0 50 2-54 144-195 (275)
40 PRK14272 phosphate ABC transpo 57.2 39 0.00084 22.7 5.1 49 3-54 155-205 (252)
41 PF13558 SbcCD_C: Putative exo 57.0 15 0.00033 21.8 2.8 37 5-41 44-89 (90)
42 PRK14239 phosphate transporter 57.0 23 0.00051 23.7 4.0 51 2-55 154-206 (252)
43 cd03214 ABC_Iron-Siderophores_ 56.9 26 0.00057 22.5 4.1 50 2-54 103-156 (180)
44 PRK14260 phosphate ABC transpo 56.3 28 0.0006 23.7 4.3 50 2-54 156-207 (259)
45 PRK14247 phosphate ABC transpo 56.3 36 0.00078 22.9 4.8 49 3-54 153-203 (250)
46 cd03248 ABCC_TAP TAP, the Tran 56.2 31 0.00066 22.8 4.4 50 2-54 156-207 (226)
47 PRK10584 putative ABC transpor 56.2 28 0.00061 23.0 4.3 51 2-55 152-206 (228)
48 PRK14243 phosphate transporter 56.1 33 0.00071 23.5 4.7 50 2-54 157-208 (264)
49 cd03240 ABC_Rad50 The catalyti 56.1 23 0.00049 23.7 3.8 43 15-57 137-184 (204)
50 PF13086 AAA_11: AAA domain; P 55.6 17 0.00037 23.0 3.0 37 17-59 192-230 (236)
51 cd03264 ABC_drug_resistance_li 55.6 36 0.00079 22.2 4.7 49 2-53 136-186 (211)
52 cd03279 ABC_sbcCD SbcCD and ot 55.3 30 0.00065 23.0 4.3 55 3-57 130-194 (213)
53 PRK10619 histidine/lysine/argi 54.9 38 0.00081 23.0 4.8 50 2-54 158-210 (257)
54 PRK14238 phosphate transporter 54.9 30 0.00066 23.8 4.4 51 2-55 173-225 (271)
55 PRK14235 phosphate transporter 54.7 31 0.00067 23.7 4.4 50 2-54 169-220 (267)
56 cd03274 ABC_SMC4_euk Eukaryoti 54.6 27 0.00058 23.6 4.0 52 2-53 133-187 (212)
57 PRK14244 phosphate ABC transpo 54.5 41 0.0009 22.6 4.9 49 3-54 156-206 (251)
58 TIGR01007 eps_fam capsular exo 54.5 57 0.0012 21.2 6.1 48 6-55 5-55 (204)
59 PRK14242 phosphate transporter 54.3 31 0.00067 23.2 4.3 49 3-54 156-206 (253)
60 COG0253 DapF Diaminopimelate e 54.2 42 0.0009 24.6 5.1 45 16-60 9-58 (272)
61 cd03238 ABC_UvrA The excision 53.8 26 0.00056 23.3 3.8 52 2-56 93-149 (176)
62 PRK13540 cytochrome c biogenes 53.6 31 0.00068 22.5 4.1 49 2-53 133-184 (200)
63 PRK14253 phosphate ABC transpo 53.5 35 0.00075 22.9 4.4 50 3-55 152-203 (249)
64 cd03235 ABC_Metallic_Cations A 53.4 28 0.00062 22.7 3.9 50 2-54 138-190 (213)
65 PRK14273 phosphate ABC transpo 52.6 46 0.001 22.4 4.9 49 3-54 157-207 (254)
66 TIGR02324 CP_lyasePhnL phospho 52.6 32 0.00069 22.7 4.0 51 2-55 155-208 (224)
67 cd03266 ABC_NatA_sodium_export 52.3 33 0.00072 22.4 4.1 50 2-54 142-194 (218)
68 PRK13695 putative NTPase; Prov 52.2 48 0.001 21.1 4.7 47 8-54 86-134 (174)
69 cd03232 ABC_PDR_domain2 The pl 52.1 35 0.00075 22.2 4.1 50 2-54 114-166 (192)
70 TIGR01166 cbiO cobalt transpor 52.1 44 0.00095 21.5 4.6 51 2-55 133-186 (190)
71 TIGR02673 FtsE cell division A 52.0 50 0.0011 21.5 4.9 50 2-54 143-195 (214)
72 PRK10247 putative ABC transpor 51.8 42 0.00091 22.3 4.6 51 2-55 143-197 (225)
73 PRK14246 phosphate ABC transpo 51.8 46 0.00099 22.8 4.9 49 3-54 160-210 (257)
74 COG1011 Predicted hydrolase (H 51.8 39 0.00085 21.7 4.3 39 18-56 142-181 (229)
75 PRK13640 cbiO cobalt transport 51.8 21 0.00045 24.9 3.2 51 2-55 149-203 (282)
76 PRK14240 phosphate transporter 51.3 46 0.001 22.3 4.7 50 2-54 152-203 (250)
77 PRK13636 cbiO cobalt transport 51.2 23 0.0005 24.7 3.3 50 2-54 147-200 (283)
78 cd03252 ABCC_Hemolysin The ABC 51.2 53 0.0011 21.8 5.0 48 3-53 145-194 (237)
79 PF02463 SMC_N: RecF/RecN/SMC 51.2 20 0.00044 23.5 2.9 49 4-53 146-196 (220)
80 TIGR03608 L_ocin_972_ABC putat 51.0 36 0.00079 22.0 4.1 51 2-55 140-193 (206)
81 PF03266 NTPase_1: NTPase; In 50.9 32 0.00069 22.7 3.8 37 16-52 94-131 (168)
82 cd03226 ABC_cobalt_CbiO_domain 50.7 40 0.00088 21.9 4.3 50 2-54 132-184 (205)
83 cd03213 ABCG_EPDR ABCG transpo 50.6 43 0.00094 21.9 4.4 50 2-54 117-169 (194)
84 PRK14251 phosphate ABC transpo 50.4 44 0.00096 22.4 4.5 49 3-54 154-204 (251)
85 PRK14241 phosphate transporter 50.4 38 0.00081 23.0 4.2 49 3-54 155-205 (258)
86 cd03245 ABCC_bacteriocin_expor 50.2 66 0.0014 21.0 5.3 50 2-54 146-197 (220)
87 cd00267 ABC_ATPase ABC (ATP-bi 50.1 33 0.00072 21.3 3.7 49 2-53 86-137 (157)
88 COG0497 RecN ATPase involved i 50.1 35 0.00077 27.5 4.5 51 4-55 441-493 (557)
89 TIGR01277 thiQ thiamine ABC tr 50.0 38 0.00083 22.2 4.1 51 2-55 134-188 (213)
90 PRK14248 phosphate ABC transpo 49.7 40 0.00087 23.0 4.3 50 3-55 171-222 (268)
91 PRK11629 lolD lipoprotein tran 49.6 47 0.001 22.1 4.5 51 2-55 151-205 (233)
92 PF02562 PhoH: PhoH-like prote 49.5 23 0.00049 24.6 3.1 36 17-55 119-154 (205)
93 TIGR00630 uvra excinuclease AB 49.0 29 0.00063 29.2 4.1 55 2-56 834-891 (924)
94 TIGR00630 uvra excinuclease AB 48.9 27 0.00059 29.4 3.9 53 3-56 494-549 (924)
95 cd03292 ABC_FtsE_transporter F 48.7 62 0.0013 21.0 4.9 49 3-54 143-194 (214)
96 cd03219 ABC_Mj1267_LivG_branch 48.6 33 0.00072 22.7 3.7 50 2-54 149-201 (236)
97 TIGR02768 TraA_Ti Ti-type conj 48.6 18 0.00039 29.3 2.8 43 15-59 437-480 (744)
98 cd03246 ABCC_Protease_Secretio 48.5 55 0.0012 20.8 4.6 50 2-54 102-154 (173)
99 TIGR03873 F420-0_ABC_ATP propo 48.1 51 0.0011 22.3 4.6 50 2-54 143-195 (256)
100 PRK00349 uvrA excinuclease ABC 48.0 32 0.0007 29.0 4.2 54 3-56 837-893 (943)
101 TIGR03522 GldA_ABC_ATP gliding 47.9 40 0.00086 23.8 4.1 50 2-54 139-190 (301)
102 cd03227 ABC_Class2 ABC-type Cl 47.3 49 0.0011 21.0 4.2 52 3-54 84-139 (162)
103 TIGR01448 recD_rel helicase, p 47.2 47 0.001 26.9 4.8 42 16-59 415-456 (720)
104 cd03239 ABC_SMC_head The struc 47.2 35 0.00076 22.4 3.6 53 3-55 101-157 (178)
105 PRK14262 phosphate ABC transpo 47.2 46 0.001 22.3 4.2 50 2-54 152-203 (250)
106 PRK13648 cbiO cobalt transport 47.1 39 0.00085 23.2 3.9 51 2-55 148-202 (269)
107 PRK14266 phosphate ABC transpo 47.0 53 0.0012 22.0 4.5 49 3-54 153-203 (250)
108 PRK14275 phosphate ABC transpo 46.8 45 0.00097 23.3 4.2 49 3-54 189-239 (286)
109 PRK11264 putative amino-acid A 46.8 67 0.0014 21.5 5.0 50 2-54 150-202 (250)
110 TIGR01189 ccmA heme ABC export 46.8 56 0.0012 21.2 4.5 52 3-58 134-188 (198)
111 COG1131 CcmA ABC-type multidru 46.8 31 0.00068 24.5 3.5 42 1-45 141-184 (293)
112 PRK13652 cbiO cobalt transport 46.6 42 0.00091 23.2 4.0 51 2-55 143-197 (277)
113 cd03300 ABC_PotA_N PotA is an 46.4 41 0.00088 22.4 3.8 52 2-56 136-191 (232)
114 cd03293 ABC_NrtD_SsuB_transpor 46.3 51 0.0011 21.7 4.3 51 2-55 137-191 (220)
115 cd03258 ABC_MetN_methionine_tr 46.3 37 0.0008 22.5 3.6 51 2-55 146-200 (233)
116 PRK14268 phosphate ABC transpo 46.3 64 0.0014 21.9 4.8 49 3-54 161-211 (258)
117 cd03229 ABC_Class3 This class 46.2 36 0.00078 21.8 3.5 50 2-54 106-159 (178)
118 PRK14274 phosphate ABC transpo 46.2 53 0.0012 22.3 4.5 49 3-54 162-212 (259)
119 PRK00635 excinuclease ABC subu 46.1 36 0.00077 31.0 4.3 54 2-55 815-871 (1809)
120 cd03275 ABC_SMC1_euk Eukaryoti 45.9 52 0.0011 22.4 4.4 53 3-55 162-218 (247)
121 PRK14261 phosphate ABC transpo 45.7 54 0.0012 22.1 4.4 50 3-55 156-207 (253)
122 TIGR02211 LolD_lipo_ex lipopro 45.5 65 0.0014 21.0 4.7 50 3-55 148-201 (221)
123 PRK13643 cbiO cobalt transport 45.5 56 0.0012 22.8 4.6 51 2-55 150-203 (288)
124 cd03255 ABC_MJ0796_Lo1CDE_FtsE 45.3 44 0.00095 21.8 3.8 49 3-54 147-199 (218)
125 cd03272 ABC_SMC3_euk Eukaryoti 45.2 58 0.0013 21.6 4.4 53 2-55 164-219 (243)
126 KOG3062|consensus 45.0 24 0.00051 26.3 2.7 23 5-27 61-83 (281)
127 PRK00349 uvrA excinuclease ABC 44.7 38 0.00082 28.6 4.1 52 3-55 496-550 (943)
128 TIGR00611 recf recF protein. A 44.5 33 0.00072 25.3 3.4 27 17-43 302-330 (365)
129 cd03224 ABC_TM1139_LivF_branch 44.5 55 0.0012 21.4 4.2 48 3-53 139-189 (222)
130 PRK14259 phosphate ABC transpo 44.3 53 0.0012 22.6 4.3 50 2-54 160-211 (269)
131 cd03273 ABC_SMC2_euk Eukaryoti 44.0 84 0.0018 21.3 5.2 53 3-55 173-228 (251)
132 PRK14252 phosphate ABC transpo 43.9 53 0.0011 22.4 4.2 49 3-54 168-218 (265)
133 cd03298 ABC_ThiQ_thiamine_tran 43.8 55 0.0012 21.3 4.1 51 2-55 134-188 (211)
134 cd03216 ABC_Carb_Monos_I This 43.5 59 0.0013 20.7 4.1 51 2-55 88-141 (163)
135 PRK12753 transketolase; Review 43.4 73 0.0016 25.7 5.4 42 13-56 171-220 (663)
136 PRK05642 DNA replication initi 43.2 49 0.0011 22.6 3.9 46 11-56 91-139 (234)
137 PRK13646 cbiO cobalt transport 43.1 63 0.0014 22.5 4.5 53 2-57 151-207 (286)
138 PRK14270 phosphate ABC transpo 42.8 58 0.0013 21.9 4.2 50 2-54 153-204 (251)
139 TIGR03864 PQQ_ABC_ATP ABC tran 42.8 60 0.0013 21.6 4.2 50 2-54 138-191 (236)
140 PRK13634 cbiO cobalt transport 42.5 45 0.00096 23.4 3.7 52 2-56 151-206 (290)
141 PRK10908 cell division protein 42.5 61 0.0013 21.3 4.2 49 3-54 144-195 (222)
142 TIGR00960 3a0501s02 Type II (G 42.4 62 0.0013 21.1 4.2 50 3-55 145-197 (216)
143 PRK11124 artP arginine transpo 42.1 63 0.0014 21.5 4.3 50 2-54 147-199 (242)
144 PRK14237 phosphate transporter 42.0 64 0.0014 22.1 4.4 50 2-54 169-220 (267)
145 PRK13633 cobalt transporter AT 41.9 54 0.0012 22.7 4.0 50 2-54 150-203 (280)
146 PRK14254 phosphate ABC transpo 41.9 78 0.0017 22.1 4.9 50 2-54 186-237 (285)
147 COG0411 LivG ABC-type branched 41.9 53 0.0012 24.0 4.1 53 3-58 156-212 (250)
148 PRK14236 phosphate transporter 41.9 61 0.0013 22.3 4.3 51 2-55 174-226 (272)
149 PRK14250 phosphate ABC transpo 41.8 64 0.0014 21.7 4.3 51 2-55 137-191 (241)
150 TIGR01549 HAD-SF-IA-v1 haloaci 41.4 78 0.0017 19.2 4.3 35 20-55 109-143 (154)
151 TIGR01842 type_I_sec_PrtD type 41.4 70 0.0015 24.2 4.8 50 3-55 461-513 (544)
152 cd03296 ABC_CysA_sulfate_impor 41.3 52 0.0011 22.0 3.7 51 2-55 142-196 (239)
153 TIGR01686 FkbH FkbH-like domai 41.2 32 0.0007 24.5 2.8 26 29-54 85-111 (320)
154 cd03257 ABC_NikE_OppD_transpor 41.1 48 0.001 21.7 3.5 49 3-54 152-204 (228)
155 cd03259 ABC_Carb_Solutes_like 40.7 44 0.00096 21.8 3.3 51 2-55 136-190 (213)
156 cd03225 ABC_cobalt_CbiO_domain 40.3 60 0.0013 21.1 3.9 50 2-54 140-192 (211)
157 cd00808 GluRS_core catalytic c 40.2 55 0.0012 23.2 3.9 40 5-44 21-61 (239)
158 TIGR02323 CP_lyasePhnK phospho 40.2 64 0.0014 21.7 4.1 50 3-55 155-208 (253)
159 cd03301 ABC_MalK_N The N-termi 40.2 56 0.0012 21.2 3.7 50 3-55 137-190 (213)
160 PRK10253 iron-enterobactin tra 40.1 77 0.0017 21.7 4.5 51 2-55 149-203 (265)
161 PRK14269 phosphate ABC transpo 40.0 90 0.0019 21.0 4.8 50 3-55 149-200 (246)
162 TIGR00972 3a0107s01c2 phosphat 39.7 80 0.0017 21.2 4.5 49 3-54 151-201 (247)
163 PRK13649 cbiO cobalt transport 39.5 66 0.0014 22.1 4.1 50 3-55 152-204 (280)
164 COG3882 FkbH Predicted enzyme 39.4 33 0.00071 27.9 2.9 25 30-54 310-335 (574)
165 COG1122 CbiO ABC-type cobalt t 39.3 58 0.0013 22.9 3.9 49 3-54 145-197 (235)
166 PRK14271 phosphate ABC transpo 39.2 71 0.0015 22.2 4.3 50 3-55 170-221 (276)
167 PRK11248 tauB taurine transpor 39.0 74 0.0016 21.8 4.3 50 2-54 134-187 (255)
168 PRK13637 cbiO cobalt transport 38.9 60 0.0013 22.7 3.9 51 2-55 150-204 (287)
169 TIGR01978 sufC FeS assembly AT 38.9 73 0.0016 21.1 4.2 50 2-54 150-202 (243)
170 TIGR01846 type_I_sec_HlyB type 38.8 76 0.0017 24.9 4.8 49 3-54 600-650 (694)
171 PF13514 AAA_27: AAA domain 38.6 45 0.00097 28.0 3.6 53 5-57 1036-1093(1111)
172 cd03218 ABC_YhbG The ABC trans 38.5 75 0.0016 20.9 4.1 49 3-54 140-191 (232)
173 PRK15056 manganese/iron transp 38.5 87 0.0019 21.5 4.6 51 2-55 148-201 (272)
174 cd03261 ABC_Org_Solvent_Resist 38.4 73 0.0016 21.1 4.1 51 2-55 142-196 (235)
175 cd03242 ABC_RecF RecF is a rec 38.4 69 0.0015 22.2 4.1 32 12-43 205-238 (270)
176 PRK10575 iron-hydroxamate tran 38.3 82 0.0018 21.5 4.4 51 2-55 153-207 (265)
177 PRK13577 diaminopimelate epime 38.2 56 0.0012 23.0 3.7 37 16-52 9-47 (281)
178 COG2241 CobL Precorrin-6B meth 38.2 52 0.0011 23.2 3.5 30 31-62 151-180 (210)
179 PRK10771 thiQ thiamine transpo 38.1 70 0.0015 21.2 4.0 50 3-55 136-189 (232)
180 COG1400 SEC65 Signal recogniti 38.0 35 0.00075 21.5 2.3 24 24-47 25-48 (93)
181 PRK14255 phosphate ABC transpo 38.0 70 0.0015 21.5 4.0 50 3-55 155-206 (252)
182 PRK13642 cbiO cobalt transport 37.7 69 0.0015 22.2 4.0 50 2-54 146-199 (277)
183 cd03263 ABC_subfamily_A The AB 37.6 76 0.0016 20.7 4.0 48 3-53 140-189 (220)
184 PRK13647 cbiO cobalt transport 37.6 87 0.0019 21.7 4.5 51 2-55 144-197 (274)
185 cd03237 ABC_RNaseL_inhibitor_d 37.6 69 0.0015 22.0 4.0 50 3-55 122-175 (246)
186 TIGR00968 3a0106s01 sulfate AB 37.4 63 0.0014 21.7 3.7 52 2-56 136-191 (237)
187 COG0021 TktA Transketolase [Ca 37.2 81 0.0018 26.2 4.8 44 10-55 170-221 (663)
188 PRK09493 glnQ glutamine ABC tr 37.1 82 0.0018 21.0 4.2 50 2-54 142-194 (240)
189 cd03295 ABC_OpuCA_Osmoprotecti 37.1 75 0.0016 21.3 4.0 51 2-55 141-195 (242)
190 cd03267 ABC_NatA_like Similar 37.1 67 0.0014 21.6 3.8 51 2-55 159-213 (236)
191 PRK01045 ispH 4-hydroxy-3-meth 37.0 36 0.00077 25.1 2.6 51 1-53 70-120 (298)
192 cd04195 GT2_AmsE_like GT2_AmsE 36.8 70 0.0015 19.8 3.6 34 7-41 19-52 (201)
193 PLN02234 1-deoxy-D-xylulose-5- 36.8 71 0.0015 26.0 4.4 20 35-56 274-294 (641)
194 cd03217 ABC_FeS_Assembly ABC-t 36.7 66 0.0014 21.0 3.6 51 2-55 110-163 (200)
195 TIGR01188 drrA daunorubicin re 36.6 73 0.0016 22.4 4.1 50 2-54 130-182 (302)
196 cd03256 ABC_PhnC_transporter A 36.5 86 0.0019 20.7 4.2 50 2-54 150-203 (241)
197 PRK13651 cobalt transporter AT 36.5 83 0.0018 22.4 4.4 51 3-56 172-225 (305)
198 cd03268 ABC_BcrA_bacitracin_re 36.5 94 0.002 20.1 4.3 48 3-53 133-183 (208)
199 PRK13538 cytochrome c biogenes 36.4 85 0.0018 20.5 4.1 49 2-53 135-186 (204)
200 PRK13635 cbiO cobalt transport 36.3 56 0.0012 22.7 3.4 50 2-54 146-199 (279)
201 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 36.3 97 0.0021 20.7 4.5 49 3-54 149-200 (224)
202 PRK13645 cbiO cobalt transport 36.2 73 0.0016 22.1 4.0 51 2-55 156-210 (289)
203 TIGR02770 nickel_nikD nickel i 35.9 58 0.0013 21.7 3.3 49 3-54 132-184 (230)
204 PRK07631 amidophosphoribosyltr 35.8 85 0.0018 24.5 4.6 58 2-60 330-390 (475)
205 COG3959 Transketolase, N-termi 35.7 73 0.0016 23.4 4.0 42 13-56 166-215 (243)
206 TIGR02769 nickel_nikE nickel i 35.5 72 0.0016 21.8 3.8 50 2-54 156-209 (265)
207 PRK13548 hmuV hemin importer A 35.4 90 0.0019 21.3 4.3 53 2-54 140-199 (258)
208 PF09992 DUF2233: Predicted pe 35.4 67 0.0015 20.4 3.4 42 16-58 99-142 (170)
209 cd03297 ABC_ModC_molybdenum_tr 35.1 52 0.0011 21.6 2.9 50 3-55 138-191 (214)
210 PRK13541 cytochrome c biogenes 35.0 1.3E+02 0.0027 19.5 5.2 49 3-54 130-181 (195)
211 cd03269 ABC_putative_ATPase Th 34.9 1E+02 0.0022 20.0 4.3 50 2-54 134-186 (210)
212 cd03260 ABC_PstB_phosphate_tra 34.6 1.1E+02 0.0024 20.1 4.5 49 3-54 148-198 (227)
213 PRK11300 livG leucine/isoleuci 34.5 1E+02 0.0022 20.6 4.4 50 3-55 160-213 (255)
214 TIGR01184 ntrCD nitrate transp 34.5 1E+02 0.0022 20.6 4.4 50 3-55 121-174 (230)
215 PF01678 DAP_epimerase: Diamin 34.3 1.1E+02 0.0024 18.5 4.4 38 18-55 9-49 (121)
216 PRK13641 cbiO cobalt transport 34.2 1E+02 0.0023 21.4 4.5 51 2-55 151-204 (287)
217 cd03230 ABC_DR_subfamily_A Thi 34.1 1.1E+02 0.0024 19.4 4.3 50 2-54 101-153 (173)
218 PRK10895 lipopolysaccharide AB 34.1 97 0.0021 20.6 4.2 50 2-54 143-195 (241)
219 TIGR03411 urea_trans_UrtD urea 34.0 92 0.002 20.7 4.0 50 3-55 150-201 (242)
220 cd03276 ABC_SMC6_euk Eukaryoti 34.0 1.3E+02 0.0029 19.9 4.8 41 3-43 116-159 (198)
221 KOG4127|consensus 33.7 26 0.00057 27.4 1.5 31 28-60 47-77 (419)
222 PRK10418 nikD nickel transport 33.7 98 0.0021 20.9 4.2 50 3-55 147-200 (254)
223 PRK11614 livF leucine/isoleuci 33.7 1.3E+02 0.0028 20.0 4.7 49 3-54 144-195 (237)
224 cd03262 ABC_HisP_GlnQ_permease 33.4 95 0.0021 20.1 4.0 49 3-54 142-193 (213)
225 PRK09456 ?-D-glucose-1-phospha 33.4 1.1E+02 0.0024 19.7 4.3 36 19-54 130-166 (199)
226 smart00487 DEXDc DEAD-like hel 33.3 89 0.0019 18.6 3.6 40 15-54 127-168 (201)
227 PRK09473 oppD oligopeptide tra 33.3 69 0.0015 23.1 3.6 51 2-55 167-221 (330)
228 cd03299 ABC_ModC_like Archeal 33.1 75 0.0016 21.2 3.5 51 2-55 135-189 (235)
229 PRK15079 oligopeptide ABC tran 33.1 87 0.0019 22.7 4.1 51 2-55 167-221 (331)
230 PRK15093 antimicrobial peptide 32.5 79 0.0017 22.7 3.7 50 2-54 164-217 (330)
231 cd03294 ABC_Pro_Gly_Bertaine T 32.4 1.1E+02 0.0024 21.0 4.3 50 3-55 167-220 (269)
232 PRK10744 pstB phosphate transp 32.2 1.1E+02 0.0023 20.8 4.2 50 3-55 163-214 (260)
233 TIGR03410 urea_trans_UrtE urea 32.2 85 0.0018 20.7 3.6 49 3-54 138-190 (230)
234 TIGR02315 ABC_phnC phosphonate 32.1 95 0.0021 20.6 3.9 50 3-55 152-205 (243)
235 TIGR03719 ABC_ABC_ChvD ATP-bin 32.1 91 0.002 23.8 4.2 48 3-55 450-499 (552)
236 PRK11231 fecE iron-dicitrate t 31.9 1.2E+02 0.0027 20.4 4.5 51 2-55 144-197 (255)
237 PHA02562 46 endonuclease subun 31.9 1.6E+02 0.0035 22.1 5.4 40 17-57 496-538 (562)
238 PF14403 CP_ATPgrasp_2: Circul 31.7 81 0.0018 24.6 3.9 46 14-62 182-228 (445)
239 PRK13639 cbiO cobalt transport 31.6 1.3E+02 0.0028 20.8 4.6 51 2-55 143-196 (275)
240 PRK10875 recD exonuclease V su 31.5 74 0.0016 25.6 3.7 39 19-59 267-305 (615)
241 PRK05710 glutamyl-Q tRNA(Asp) 31.4 85 0.0018 23.1 3.8 40 6-45 26-66 (299)
242 PF11137 DUF2909: Protein of u 31.4 26 0.00057 20.5 0.9 13 1-13 33-45 (63)
243 COG4566 TtrR Response regulato 31.3 1.3E+02 0.0028 21.5 4.6 38 22-59 52-89 (202)
244 PRK15177 Vi polysaccharide exp 31.0 93 0.002 20.7 3.7 50 2-54 110-161 (213)
245 PRK06893 DNA replication initi 30.9 72 0.0016 21.6 3.2 43 14-56 88-133 (229)
246 PRK14258 phosphate ABC transpo 30.7 1.7E+02 0.0036 20.0 5.0 49 2-53 156-208 (261)
247 PRK03695 vitamin B12-transport 30.7 1.1E+02 0.0023 20.8 4.0 54 2-55 132-192 (248)
248 TIGR01447 recD exodeoxyribonuc 30.6 97 0.0021 24.7 4.2 41 17-59 259-299 (586)
249 TIGR03740 galliderm_ABC gallid 30.4 1.4E+02 0.003 19.6 4.4 49 3-54 131-182 (223)
250 PRK13631 cbiO cobalt transport 30.4 1.1E+02 0.0025 21.9 4.2 51 3-56 183-236 (320)
251 PRK11022 dppD dipeptide transp 30.3 1.2E+02 0.0026 21.8 4.4 51 2-55 159-213 (326)
252 PRK09984 phosphonate/organopho 30.2 90 0.0019 21.2 3.6 51 2-55 158-212 (262)
253 TIGR02760 TraI_TIGR conjugativ 30.2 60 0.0013 29.5 3.3 42 16-59 528-570 (1960)
254 cd03265 ABC_DrrA DrrA is the A 30.2 1.2E+02 0.0026 19.9 4.1 49 3-54 138-190 (220)
255 PRK11176 lipid transporter ATP 30.1 1.5E+02 0.0033 22.5 5.0 48 3-53 487-536 (582)
256 KOG3062|consensus 30.0 1.9E+02 0.004 21.7 5.3 57 2-60 16-84 (281)
257 PRK11247 ssuB aliphatic sulfon 29.7 1.2E+02 0.0027 20.9 4.3 50 3-55 140-193 (257)
258 PRK06781 amidophosphoribosyltr 29.6 1.2E+02 0.0027 23.5 4.6 56 2-58 330-388 (471)
259 cd05006 SIS_GmhA Phosphoheptos 29.5 1.6E+02 0.0034 18.9 4.8 42 13-56 97-138 (177)
260 TIGR02314 ABC_MetN D-methionin 29.4 1.3E+02 0.0028 22.1 4.5 52 3-57 147-202 (343)
261 PRK08116 hypothetical protein; 29.4 98 0.0021 21.8 3.7 41 13-54 174-218 (268)
262 PRK09544 znuC high-affinity zi 29.2 1.4E+02 0.003 20.5 4.4 50 2-54 126-179 (251)
263 PRK13709 conjugal transfer nic 29.1 52 0.0011 29.9 2.7 40 17-59 1062-1103(1747)
264 cd03234 ABCG_White The White s 29.1 1.5E+02 0.0032 19.6 4.4 50 3-55 150-202 (226)
265 TIGR03771 anch_rpt_ABC anchore 29.1 1.2E+02 0.0026 20.2 3.9 51 2-55 119-172 (223)
266 cd03290 ABCC_SUR1_N The SUR do 29.0 1.6E+02 0.0035 19.2 4.5 49 2-53 146-199 (218)
267 PRK13536 nodulation factor exp 28.9 1.2E+02 0.0025 22.2 4.1 50 2-54 178-230 (340)
268 PRK10246 exonuclease subunit S 28.5 90 0.002 26.3 3.9 54 5-58 960-1019(1047)
269 cd02011 TPP_PK Thiamine pyroph 28.3 61 0.0013 23.0 2.5 22 33-56 137-158 (227)
270 PRK13638 cbiO cobalt transport 28.2 1.3E+02 0.0028 20.6 4.1 49 3-54 143-194 (271)
271 cd03222 ABC_RNaseL_inhibitor T 28.2 1.3E+02 0.0029 19.9 4.0 51 2-55 77-131 (177)
272 PRK11701 phnK phosphonate C-P 27.9 1.2E+02 0.0026 20.5 3.8 49 3-54 158-210 (258)
273 PF07693 KAP_NTPase: KAP famil 27.9 88 0.0019 21.5 3.2 39 18-56 173-212 (325)
274 TIGR01454 AHBA_synth_RP 3-amin 27.8 1.3E+02 0.0029 19.3 3.9 35 21-55 122-157 (205)
275 cd00807 GlnRS_core catalytic c 27.8 1E+02 0.0023 22.0 3.7 40 6-45 22-62 (238)
276 PRK10789 putative multidrug tr 27.8 1.4E+02 0.0031 22.8 4.6 48 3-53 458-507 (569)
277 PF01380 SIS: SIS domain SIS d 27.8 1.2E+02 0.0026 17.7 3.4 44 13-58 49-92 (131)
278 CHL00131 ycf16 sulfate ABC tra 27.7 1.2E+02 0.0025 20.3 3.8 50 2-54 157-209 (252)
279 cd00418 GlxRS_core catalytic c 27.7 1.2E+02 0.0026 21.5 3.9 40 6-45 22-62 (230)
280 PRK14988 GMP/IMP nucleotidase; 27.5 1.6E+02 0.0034 19.7 4.4 37 19-55 138-175 (224)
281 PRK14257 phosphate ABC transpo 27.4 1.2E+02 0.0027 21.9 4.0 50 3-55 232-283 (329)
282 TIGR00204 dxs 1-deoxy-D-xylulo 27.4 1.4E+02 0.003 23.8 4.5 15 40-56 234-249 (617)
283 PRK14264 phosphate ABC transpo 27.2 1.5E+02 0.0032 21.0 4.3 49 3-54 207-257 (305)
284 PRK12360 4-hydroxy-3-methylbut 27.1 61 0.0013 23.7 2.4 49 2-52 74-122 (281)
285 TIGR02857 CydD thiol reductant 27.0 2.1E+02 0.0044 21.5 5.2 49 3-54 465-515 (529)
286 PF00456 Transketolase_N: Tran 26.8 78 0.0017 23.4 2.9 45 10-56 165-217 (332)
287 PRK06921 hypothetical protein; 26.7 87 0.0019 22.1 3.1 43 13-55 173-223 (266)
288 PRK03918 chromosome segregatio 26.7 1.1E+02 0.0025 24.3 4.0 53 5-57 799-855 (880)
289 TIGR03005 ectoine_ehuA ectoine 26.6 1.6E+02 0.0035 19.7 4.3 49 3-54 153-205 (252)
290 TIGR00216 ispH_lytB (E)-4-hydr 26.6 61 0.0013 23.7 2.3 50 2-53 71-120 (280)
291 COG4152 ABC-type uncharacteriz 26.4 1.5E+02 0.0032 22.4 4.3 43 11-53 142-187 (300)
292 PRK10419 nikE nickel transport 26.3 1.1E+02 0.0023 21.1 3.4 50 2-54 157-210 (268)
293 COG0357 GidB Predicted S-adeno 26.3 1.7E+02 0.0038 20.5 4.5 44 6-55 82-125 (215)
294 COG1576 Uncharacterized conser 26.3 2.2E+02 0.0047 19.5 5.9 49 10-58 59-109 (155)
295 TIGR01993 Pyr-5-nucltdase pyri 26.2 1.8E+02 0.0038 18.4 4.9 37 19-55 126-167 (184)
296 TIGR02982 heterocyst_DevA ABC 26.2 1.6E+02 0.0035 19.3 4.2 51 3-56 148-202 (220)
297 PRK07272 amidophosphoribosyltr 26.2 1.2E+02 0.0026 23.7 4.0 51 3-54 333-386 (484)
298 PRK09580 sufC cysteine desulfu 26.1 1.6E+02 0.0036 19.5 4.2 49 3-54 152-203 (248)
299 cd03241 ABC_RecN RecN ATPase i 26.0 2.1E+02 0.0045 19.9 4.8 39 16-54 191-231 (276)
300 PRK13546 teichoic acids export 25.9 1.3E+02 0.0029 20.9 3.8 50 2-54 149-201 (264)
301 PRK00635 excinuclease ABC subu 25.7 89 0.0019 28.6 3.5 54 4-57 1707-1763(1809)
302 PRK11819 putative ABC transpor 25.7 1.4E+02 0.0031 22.9 4.2 48 3-55 452-501 (556)
303 PRK09246 amidophosphoribosyltr 25.5 1.9E+02 0.0041 22.5 4.9 55 3-58 341-398 (501)
304 cd05014 SIS_Kpsf KpsF-like pro 25.5 1.5E+02 0.0033 17.4 4.7 42 14-57 44-85 (128)
305 PF13304 AAA_21: AAA domain; P 25.5 1.6E+02 0.0035 17.7 4.3 39 5-43 245-285 (303)
306 TIGR00618 sbcc exonuclease Sbc 25.4 1.2E+02 0.0027 25.3 4.1 42 17-58 978-1022(1042)
307 cd03250 ABCC_MRP_domain1 Domai 25.4 1.9E+02 0.0042 18.7 4.4 51 2-55 133-187 (204)
308 PRK13537 nodulation ABC transp 25.4 1.5E+02 0.0032 21.0 4.1 50 2-54 144-196 (306)
309 PRK13371 4-hydroxy-3-methylbut 25.2 65 0.0014 24.9 2.3 49 2-52 115-163 (387)
310 TIGR01288 nodI ATP-binding ABC 25.0 1.4E+02 0.0031 20.9 3.9 50 2-54 141-193 (303)
311 PLN03073 ABC transporter F fam 25.0 1.5E+02 0.0032 24.2 4.4 48 3-55 351-400 (718)
312 PF01695 IstB_IS21: IstB-like 25.0 59 0.0013 21.5 1.9 31 13-43 104-137 (178)
313 KOG0523|consensus 25.0 1.7E+02 0.0037 24.3 4.7 46 9-56 162-215 (632)
314 cd05013 SIS_RpiR RpiR-like pro 24.9 1.5E+02 0.0033 17.2 3.9 43 15-59 58-100 (139)
315 COG0261 RplU Ribosomal protein 24.8 48 0.001 21.3 1.4 35 14-58 13-47 (103)
316 PRK11308 dppF dipeptide transp 24.6 1.7E+02 0.0036 21.2 4.3 50 2-54 160-213 (327)
317 PRK08727 hypothetical protein; 24.6 1.2E+02 0.0026 20.6 3.4 21 14-34 90-110 (233)
318 PRK12754 transketolase; Review 24.6 1.9E+02 0.0041 23.6 4.9 44 11-56 169-220 (663)
319 PRK15064 ABC transporter ATP-b 24.2 1.4E+02 0.0031 22.6 4.0 48 3-55 445-494 (530)
320 PRK15112 antimicrobial peptide 24.2 1.3E+02 0.0028 20.6 3.5 51 2-55 155-209 (267)
321 COG2236 Predicted phosphoribos 23.8 55 0.0012 22.7 1.6 14 45-58 86-99 (192)
322 PRK11153 metN DL-methionine tr 23.8 1.3E+02 0.0028 21.7 3.6 51 2-55 146-200 (343)
323 TIGR03375 type_I_sec_LssB type 23.7 2.1E+02 0.0046 22.4 5.0 49 3-54 608-658 (694)
324 COG1127 Ttg2A ABC-type transpo 23.6 2.5E+02 0.0054 20.8 5.0 51 1-54 150-204 (263)
325 PF00005 ABC_tran: ABC transpo 23.6 1.2E+02 0.0026 17.9 3.0 21 3-26 115-135 (137)
326 cd03270 ABC_UvrA_I The excisio 23.4 1.6E+02 0.0036 19.7 3.9 52 3-55 144-198 (226)
327 TIGR00634 recN DNA repair prot 23.4 1.9E+02 0.0041 22.5 4.6 38 18-55 463-502 (563)
328 TIGR02168 SMC_prok_B chromosom 23.4 2.1E+02 0.0046 23.0 4.9 54 4-57 1097-1153(1179)
329 PRK13650 cbiO cobalt transport 23.2 1.8E+02 0.0039 20.2 4.1 50 2-54 146-199 (279)
330 PTZ00089 transketolase; Provis 23.2 2.1E+02 0.0046 23.0 4.9 41 13-55 173-221 (661)
331 PRK13889 conjugal transfer rel 23.1 78 0.0017 27.1 2.6 43 15-59 431-474 (988)
332 cd03236 ABC_RNaseL_inhibitor_d 23.0 1.9E+02 0.0041 20.1 4.2 50 2-54 145-197 (255)
333 TIGR03269 met_CoM_red_A2 methy 22.9 2.3E+02 0.005 21.4 4.9 50 3-55 175-228 (520)
334 COG1702 PhoH Phosphate starvat 22.8 79 0.0017 24.2 2.4 42 17-60 243-284 (348)
335 KOG0572|consensus 22.6 2.9E+02 0.0062 22.2 5.4 54 2-56 338-394 (474)
336 PRK10790 putative multidrug tr 22.5 2.3E+02 0.005 21.6 4.9 48 3-53 483-532 (592)
337 PRK13632 cbiO cobalt transport 22.4 1.9E+02 0.0041 19.8 4.1 50 3-55 149-202 (271)
338 PRK11831 putative ABC transpor 22.4 1.6E+02 0.0036 20.1 3.7 49 3-54 150-202 (269)
339 PRK00064 recF recombination pr 22.3 1.5E+02 0.0033 21.6 3.7 41 13-56 296-338 (361)
340 PRK13549 xylose transporter AT 22.2 2.4E+02 0.0052 21.2 4.8 49 3-54 150-201 (506)
341 PRK11288 araG L-arabinose tran 22.2 2E+02 0.0043 21.6 4.4 49 3-54 403-454 (501)
342 TIGR01509 HAD-SF-IA-v3 haloaci 22.1 2E+02 0.0043 17.6 4.6 32 23-54 133-165 (183)
343 TIGR03415 ABC_choXWV_ATP choli 22.1 1.3E+02 0.0028 22.6 3.4 51 2-55 170-224 (382)
344 PRK15411 rcsA colanic acid cap 22.1 2.5E+02 0.0054 18.7 5.0 42 17-59 47-90 (207)
345 PF01443 Viral_helicase1: Vira 22.1 2.2E+02 0.0047 18.4 4.1 43 17-62 62-104 (234)
346 PRK14712 conjugal transfer nic 22.0 89 0.0019 28.3 2.8 41 17-59 930-971 (1623)
347 PRK13826 Dtr system oriT relax 22.0 90 0.002 27.1 2.8 42 16-59 467-509 (1102)
348 PRK15439 autoinducer 2 ABC tra 22.0 2.4E+02 0.0052 21.3 4.8 49 3-54 410-461 (510)
349 PRK10535 macrolide transporter 21.9 1.8E+02 0.004 22.9 4.3 51 2-55 150-203 (648)
350 KOG2978|consensus 21.9 2.2E+02 0.0047 20.8 4.3 50 4-55 73-124 (238)
351 PRK08181 transposase; Validate 21.9 1.4E+02 0.0031 21.3 3.5 39 14-53 164-205 (269)
352 TIGR02254 YjjG/YfnB HAD superf 21.9 2.2E+02 0.0047 18.1 4.1 36 20-55 142-179 (224)
353 PF13191 AAA_16: AAA ATPase do 21.8 47 0.001 20.5 0.9 38 6-43 137-177 (185)
354 cd00561 CobA_CobO_BtuR ATP:cor 21.7 2.6E+02 0.0055 18.6 6.3 39 17-56 95-137 (159)
355 PRK13644 cbiO cobalt transport 21.6 2E+02 0.0044 19.8 4.1 50 2-54 142-194 (274)
356 PRK11160 cysteine/glutathione 21.6 2.4E+02 0.0052 21.7 4.8 49 3-54 482-532 (574)
357 TIGR02868 CydC thiol reductant 21.6 2.3E+02 0.0051 21.2 4.7 47 4-53 478-526 (529)
358 TIGR01187 potA spermidine/putr 21.6 1.9E+02 0.004 20.7 4.0 49 3-54 107-159 (325)
359 PRK00087 4-hydroxy-3-methylbut 21.5 93 0.002 24.8 2.6 50 1-52 70-119 (647)
360 TIGR01134 purF amidophosphorib 21.5 2.5E+02 0.0055 21.4 4.9 51 3-54 321-374 (442)
361 TIGR01428 HAD_type_II 2-haloal 21.5 2.1E+02 0.0047 18.1 4.0 35 20-54 138-173 (198)
362 cd05710 SIS_1 A subgroup of th 21.4 2E+02 0.0044 17.3 4.6 42 14-57 44-85 (120)
363 COG4987 CydC ABC-type transpor 21.3 3.1E+02 0.0068 22.5 5.5 50 2-54 480-531 (573)
364 TIGR01192 chvA glucan exporter 21.1 2.6E+02 0.0056 21.6 4.9 49 3-54 478-528 (585)
365 PRK13543 cytochrome c biogenes 21.0 2.4E+02 0.0052 18.5 4.2 50 3-55 144-196 (214)
366 COG0178 UvrA Excinuclease ATPa 21.0 1.9E+02 0.0041 25.1 4.4 54 4-57 830-886 (935)
367 cd05008 SIS_GlmS_GlmD_1 SIS (S 20.9 1.9E+02 0.0042 16.9 4.5 41 15-57 44-84 (126)
368 TIGR01990 bPGM beta-phosphoglu 20.9 2.1E+02 0.0044 17.7 3.7 31 24-54 135-166 (185)
369 PRK10070 glycine betaine trans 20.8 1.9E+02 0.0041 21.8 4.0 50 3-55 171-224 (400)
370 cd04795 SIS SIS domain. SIS (S 20.7 1.6E+02 0.0035 15.9 4.6 35 12-46 42-76 (87)
371 COG0503 Apt Adenine/guanine ph 20.7 2.6E+02 0.0057 18.6 4.4 31 16-46 115-145 (179)
372 PRK13657 cyclic beta-1,2-gluca 20.7 2.6E+02 0.0057 21.4 4.8 49 3-54 478-528 (588)
373 COG0079 HisC Histidinol-phosph 20.6 3.6E+02 0.0077 19.9 5.6 36 17-53 145-183 (356)
374 KOG2111|consensus 20.6 60 0.0013 24.9 1.3 21 13-33 70-90 (346)
375 PF02698 DUF218: DUF218 domain 20.3 87 0.0019 19.4 1.9 18 34-52 87-104 (155)
376 PRK11595 DNA utilization prote 20.3 2E+02 0.0044 19.6 3.9 31 16-46 186-216 (227)
377 PRK09700 D-allose transporter 20.3 2.3E+02 0.005 21.3 4.4 49 3-54 416-467 (510)
378 PRK06835 DNA replication prote 20.1 1.8E+02 0.0039 21.4 3.8 41 13-53 242-285 (329)
379 TIGR02253 CTE7 HAD superfamily 20.0 2.5E+02 0.0055 17.9 4.4 36 20-55 140-176 (221)
380 PF10652 DUF2480: Protein of u 20.0 57 0.0012 22.7 1.1 34 13-46 7-58 (167)
381 TIGR00201 comF comF family pro 20.0 1.3E+02 0.0027 19.9 2.7 30 17-46 152-181 (190)
No 1
>KOG1624|consensus
Probab=99.49 E-value=4.9e-14 Score=102.76 Aligned_cols=55 Identities=45% Similarity=0.521 Sum_probs=52.4
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCCCCCCChHHHHHHHHhcCCCceeEEEeccc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCSQVSLSARLGIR 56 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~l~~~KTk~L~~~l~~~~~~~s~LiI~g~~ 56 (63)
||.|||++|||+|++|++|||+|++.++++|||++.++++.++||.++|||++..
T Consensus 158 vr~lgl~~ALS~~~a~~~l~I~d~~~L~t~~pk~~~~l~~~~~~g~~vl~v~~~~ 212 (290)
T KOG1624|consen 158 VRSLGLKIALSAKLAQDDLHIVDELGLPTGKPKYLLNLLAQRNWGTSVLFVDEDH 212 (290)
T ss_pred HHHHHHHHHHHHHHhCCceEEecccCCCCCCcHHHHHHHHHHhcCCeeEEeccch
Confidence 7999999999999999999999999999999999999999999998899997544
No 2
>PF00573 Ribosomal_L4: Ribosomal protein L4/L1 family; InterPro: IPR002136 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes ribosomal L4/L1 from eukaryotes and plants and L4 from bacteria. L4 from yeast has been shown to bind rRNA []. These proteins have 246 (plant) to 427 (human) amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3IZR_D 1VSA_D 3D5D_F 3MS1_E 3F1F_F 3PYO_E 3MRZ_E 3F1H_F 3PYR_E 1VSP_D ....
Probab=99.39 E-value=2.4e-13 Score=92.97 Aligned_cols=54 Identities=26% Similarity=0.222 Sum_probs=51.2
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC-CCCCChHHHHHHHHhcCC-CceeEEEecc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV-LPVDDPKYLENLVEERCS-QVSLSARLGI 55 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~-l~~~KTk~L~~~l~~~~~-~~s~LiI~g~ 55 (63)
+|++||++|||+|+++|+|+|||+++ ++++|||++.+.|++++| +.++|||++.
T Consensus 90 ~r~lAl~~aLs~k~~~~~l~vvd~~~~~~~~kTk~~~~~L~~~~~~~~~~L~V~~~ 145 (192)
T PF00573_consen 90 VRRLALRSALSAKAAEGNLIVVDNFSPLEEPKTKDLVKLLKKLGLKGKSVLFVVGE 145 (192)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHCTSCSSSSSSSHHHHHHHHHHTTTSSSSEEEEESS
T ss_pred HHHHHHHHHHHHhhcccceEEeeccccccccCHHHHHHHHHHhhhcccceEEEecC
Confidence 69999999999999999999999998 999999999999999999 4579999984
No 3
>PRK05319 rplD 50S ribosomal protein L4; Provisional
Probab=99.35 E-value=2.9e-12 Score=88.59 Aligned_cols=53 Identities=25% Similarity=0.162 Sum_probs=49.9
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCCCCCCChHHHHHHHHhcCCCceeEEEecc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCSQVSLSARLGI 55 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~l~~~KTk~L~~~l~~~~~~~s~LiI~g~ 55 (63)
+|++|+++|||+|+++++|+|||+++++.+|||.+.+.|+++||+ ++|||.+.
T Consensus 104 ~~~lAl~~aLs~k~~~~~l~Vvd~~~~~~~KTk~~~~~l~~lg~~-~~Lii~~~ 156 (205)
T PRK05319 104 VRRLALRSALSEKAREGRLVVVDDLSLEAPKTKELAAKLKNLGLK-KVLIVTDE 156 (205)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEeccccCCCCHHHHHHHHHHcCCC-ceEEEECC
Confidence 689999999999999999999999999999999999999999996 69999853
No 4
>PRK14547 rplD 50S ribosomal protein L4; Provisional
Probab=99.28 E-value=7.8e-12 Score=91.24 Aligned_cols=56 Identities=18% Similarity=0.058 Sum_probs=49.7
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC-CCCCChHHHHHHHHhcCCCceeEEEecccC
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV-LPVDDPKYLENLVEERCSQVSLSARLGIRD 57 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~-l~~~KTk~L~~~l~~~~~~~s~LiI~g~~~ 57 (63)
+|++||++|||.|+++++|+|||+|. ++.+|||.+.+.|+++++.++.|||++..+
T Consensus 105 ~rrlAlrsALS~k~~~~~liVVd~~~~~~~~KTK~~~~~L~~l~~~~~lLiv~~~~~ 161 (298)
T PRK14547 105 MRQAALRGALSDRARDNRLIVVESLQDGDPPSTKAVAQALSVMEDQRALLVVAERSD 161 (298)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEeCccccCCcCHHHHHHHHHhcccCceEEEEecCcc
Confidence 69999999999999999999999996 899999999999999987656777765444
No 5
>CHL00147 rpl4 ribosomal protein L4; Validated
Probab=99.22 E-value=3.3e-11 Score=84.30 Aligned_cols=52 Identities=15% Similarity=0.164 Sum_probs=46.7
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCC--ceeEEEecc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQ--VSLSARLGI 55 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~--~s~LiI~g~ 55 (63)
+|++||++|||+| +++|+|||++. ++++|||.+.+.|+++++. .++|||++.
T Consensus 110 vrrlAl~sALS~k--~~~l~VVd~~~~~~~~~KTK~~~~~L~~l~~~~~~~~L~V~~~ 165 (215)
T CHL00147 110 ERRLALRTLLYNK--SNNITVVENFESSITNPKTKAFINLLKKLNINLDQKILIIVPE 165 (215)
T ss_pred HHHHHHHHHHHHh--hCCeEEEcccccccCCCCHHHHHHHHHHcCCCcCCceEEEECC
Confidence 7999999999998 55899999999 9999999999999999874 369999754
No 6
>PRK14907 rplD 50S ribosomal protein L4; Provisional
Probab=99.16 E-value=7.9e-11 Score=86.17 Aligned_cols=51 Identities=14% Similarity=0.007 Sum_probs=46.9
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCCCCCCChHHHHHHHHhcCCC--ceeEEEe
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCSQ--VSLSARL 53 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~l~~~KTk~L~~~l~~~~~~--~s~LiI~ 53 (63)
+|++||++|||.|+++ +|+|||+|+++++||+.+.+.|+++|+. +++|||+
T Consensus 194 vRrLALrsALS~ka~~-~LvVVd~~~le~~KTK~l~~~L~~lgl~~~k~vLiV~ 246 (295)
T PRK14907 194 VRFNAFVSALTLLANS-KAVLVDDFKLEKISTKDLIKKLTKLKINNLKHILIVS 246 (295)
T ss_pred HHHHHHHHHHHHhccC-CEEEEecccCCCCCHHHHHHHHHHcCcccCCceEEEE
Confidence 7999999999999876 7999999999999999999999999873 3699998
No 7
>COG0088 RplD Ribosomal protein L4 [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=7.6e-10 Score=77.55 Aligned_cols=57 Identities=28% Similarity=0.240 Sum_probs=50.2
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCCCC-CCChHHHHHHHHhcCCCc-eeEEEecccCC
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLVLP-VDDPKYLENLVEERCSQV-SLSARLGIRDL 58 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~l~-~~KTk~L~~~l~~~~~~~-s~LiI~g~~~~ 58 (63)
+|++||++|||+|+++|+|+++|++.++ ++|||.+.+.|++++... .++++.+.++-
T Consensus 106 ~rrlAl~sAls~ka~~~~lv~~~~~~~~~~~kTK~~~~~lk~l~~~~~~~l~~~~~~~~ 164 (214)
T COG0088 106 ERRLALRSALSAKARAGKLVVVRGHVFEDAPKTKELVEFLKKLGLDVKRLLIVKGERDG 164 (214)
T ss_pred HHHHHHHHHHHHhccCCCEEEEecccccCCccHHHHHHHHHHhhhhhceeEEeeccccc
Confidence 6999999999999999999999999999 999999999999977663 47777666654
No 8
>TIGR03672 rpl4p_arch 50S ribosomal protein L4P. One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.
Probab=98.95 E-value=2.1e-09 Score=77.14 Aligned_cols=43 Identities=16% Similarity=0.236 Sum_probs=41.3
Q ss_pred hhhhhhHHHHhhhhcCC--------------cEEEEecCCCCCCChHHHHHHHHhcCC
Q psy5946 2 SIVLGLTSTLSIKLMQD--------------DLHIVKDLVLPVDDPKYLENLVEERCS 45 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~--------------~LiIvD~l~l~~~KTk~L~~~l~~~~~ 45 (63)
+|++|+++|||+|+.++ .|+|+|+|+ +.+|||++.+.|++++.
T Consensus 108 ~rrlAl~sALs~k~~~~lv~~~~~~~~~~e~~lvVvd~~~-~~~KTK~~~~~Lk~l~~ 164 (251)
T TIGR03672 108 ERRLAIRSAIAATADPELVKARGHVFEGDELPIVVVDDFE-SLKKTKEVRELLEALGV 164 (251)
T ss_pred HHHHHHHHHHHHhcchhhhhhcccccccccccEEEEeCCC-CCCCHHHHHHHHHHcCC
Confidence 68999999999999998 899999999 99999999999999986
No 9
>PRK04042 rpl4lp 50S ribosomal protein L4P; Provisional
Probab=98.94 E-value=2.1e-09 Score=77.19 Aligned_cols=43 Identities=19% Similarity=0.252 Sum_probs=40.8
Q ss_pred hhhhhhHHHHhhhhcCC---------------cEEEEecCCCCCCChHHHHHHHHhcCC
Q psy5946 2 SIVLGLTSTLSIKLMQD---------------DLHIVKDLVLPVDDPKYLENLVEERCS 45 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~---------------~LiIvD~l~l~~~KTk~L~~~l~~~~~ 45 (63)
+|++||++|||+|+.++ .|+|+|+|+ +.+|||++.+.|++++.
T Consensus 108 ~rrlAlrsALs~k~~~~lv~~~~~~~~~~~e~~lvvvd~~~-~~~KTK~~~~~Lk~lg~ 165 (254)
T PRK04042 108 ERRLAIRSAIAATANPELVKARGHVFEGVPELPLVVVDDFE-SLKKTKEVRELLEKLGL 165 (254)
T ss_pred HHHHHHHHHHHHhhhhhhhhhcCccccCCCccCEEEEcccc-cccCHHHHHHHHHHcCC
Confidence 68999999999999985 899999999 99999999999999986
No 10
>PLN00185 60S ribosomal protein L4-1; Provisional
Probab=97.98 E-value=2.2e-05 Score=59.84 Aligned_cols=43 Identities=12% Similarity=0.182 Sum_probs=35.6
Q ss_pred hhhhhhHHHHhhhhc------CC---------cEEEEecCCCCCCChHHHHHHHHhcCC
Q psy5946 2 SIVLGLTSTLSIKLM------QD---------DLHIVKDLVLPVDDPKYLENLVEERCS 45 (63)
Q Consensus 2 vR~lGLk~ALS~K~~------q~---------~LiIvD~l~l~~~KTk~L~~~l~~~~~ 45 (63)
+|++++++|||+++. .| .| ||||...+.+|||++.++|+++|.
T Consensus 123 ~rRlAl~SALAa~a~~~lV~arGH~i~~v~e~pL-VV~d~~e~~~KTK~av~~Lk~lg~ 180 (405)
T PLN00185 123 QKRYAVVSALAASAVPSLVMARGHKIENVPEVPL-VVSDSAESIEKTSAAIKILKQIGA 180 (405)
T ss_pred HHHHHHHHHHHhhccchhhhcccccccccccCCE-EEEeCccCCcCHHHHHHHHHHcCC
Confidence 689999999999992 33 45 566666677999999999999986
No 11
>PTZ00428 60S ribosomal protein L4; Provisional
Probab=97.84 E-value=5.6e-05 Score=57.29 Aligned_cols=44 Identities=16% Similarity=0.027 Sum_probs=33.9
Q ss_pred hhhhhhHHHHhhhh---------------cCCcEEEEecCCCCCCChHHHHHHHHhcCCC
Q psy5946 2 SIVLGLTSTLSIKL---------------MQDDLHIVKDLVLPVDDPKYLENLVEERCSQ 46 (63)
Q Consensus 2 vR~lGLk~ALS~K~---------------~q~~LiIvD~l~l~~~KTk~L~~~l~~~~~~ 46 (63)
+|++++++|||+++ .++.|+ |||+--..+|||++.++|+++|+.
T Consensus 118 ~rR~Al~SALaa~a~~~lv~argh~i~~v~e~plV-V~d~~e~~~KTK~av~~Lk~lg~~ 176 (381)
T PTZ00428 118 QKRHAVASALAASGVPALVMARGHRISNVPEVPLV-VSDSVESYEKTKEAVAFLKALGAF 176 (381)
T ss_pred HHHHHHHHHHHhhccchhhhcccccccccccCCEE-EEcCcCCCCCHHHHHHHHHHcCCc
Confidence 68999999999996 344555 555522337999999999999963
No 12
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=77.84 E-value=3 Score=33.96 Aligned_cols=57 Identities=21% Similarity=0.194 Sum_probs=43.7
Q ss_pred hhhhhhHHHHhhhhcCC---cEEEEecC--CCCCCChHHHHHHHHhcCCC-ceeEEEecccCC
Q psy5946 2 SIVLGLTSTLSIKLMQD---DLHIVKDL--VLPVDDPKYLENLVEERCSQ-VSLSARLGIRDL 58 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~---~LiIvD~l--~l~~~KTk~L~~~l~~~~~~-~s~LiI~g~~~~ 58 (63)
.=.++|+.|||..+..+ +++++|+. .+++.-=..+++.+.++.+. +.+.||.+.+++
T Consensus 823 ~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel 885 (908)
T COG0419 823 LASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEEL 885 (908)
T ss_pred HHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHH
Confidence 34689999999999999 89999988 36665666777888887765 557777666554
No 13
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=75.33 E-value=6.9 Score=25.69 Aligned_cols=54 Identities=15% Similarity=0.132 Sum_probs=36.5
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC-CCceeEEEecccCCc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC-SQVSLSARLGIRDLQ 59 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~~~s~LiI~g~~~~~ 59 (63)
-+++++..||.. +-+++|+|+.. ++..-.+.+.+.+.++. .+. .+|+..++.+.
T Consensus 131 ~qrl~laral~~---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~-tiii~sH~~~~ 187 (201)
T cd03231 131 QRRVALARLLLS---GRPLWILDEPTTALDKAGVARFAEAMAGHCARGG-MVVLTTHQDLG 187 (201)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCC-EEEEEecCchh
Confidence 367778888775 66899999984 55555677788887653 343 55555565543
No 14
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=73.76 E-value=13 Score=23.81 Aligned_cols=49 Identities=6% Similarity=0.068 Sum_probs=35.2
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEe
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARL 53 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~ 53 (63)
.|+++|..||.. +-+++++|+.. ++..-...+.+.+.++.-+..++++.
T Consensus 102 ~~rl~la~al~~---~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~s 152 (171)
T cd03228 102 RQRIAIARALLR---DPPILILDEATSALDPETEALILEALRALAKGKTVIVIA 152 (171)
T ss_pred HHHHHHHHHHhc---CCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 467888888865 66899999984 66666778888888765443455554
No 15
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=69.26 E-value=16 Score=24.07 Aligned_cols=50 Identities=8% Similarity=0.139 Sum_probs=35.4
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g 54 (63)
.|+++|..||. .+-+++++|+.. ++..-.+.+.+.+..+.-+.+++++..
T Consensus 145 ~~rv~la~al~---~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh 196 (229)
T cd03254 145 RQLLAIARAML---RDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAH 196 (229)
T ss_pred HHHHHHHHHHh---cCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 46788888885 577999999994 666666777888877632444666653
No 16
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=67.73 E-value=17 Score=24.47 Aligned_cols=50 Identities=12% Similarity=0.179 Sum_probs=34.4
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g 54 (63)
.|+++|..||- .+-+++++|+.. ++..-...+.+.+..+..+..++++..
T Consensus 153 ~qrv~laral~---~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh 204 (251)
T PRK14249 153 QQRLCIARVLA---IEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTH 204 (251)
T ss_pred HHHHHHHHHHh---cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 46778888884 477999999984 555555667777777643445666654
No 17
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=67.66 E-value=16 Score=25.20 Aligned_cols=50 Identities=10% Similarity=0.141 Sum_probs=35.7
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g 54 (63)
.++++|..||. .+-+++++|+.. ++..-.+.+.+.+.++..+..++++..
T Consensus 155 ~qrv~laral~---~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH 206 (261)
T PRK14263 155 QQRLCIARAIA---TEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTH 206 (261)
T ss_pred HHHHHHHHHHH---cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 36677777775 477999999994 666667788888888755544555543
No 18
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=67.52 E-value=11 Score=26.81 Aligned_cols=54 Identities=17% Similarity=0.116 Sum_probs=37.2
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC-CCceeEEEecc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC-SQVSLSARLGI 55 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~~~s~LiI~g~ 55 (63)
.+++.|..||..+....+++++|+.. ++....+.+.+.+.++. .+.++++|.+.
T Consensus 175 ~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~ 231 (261)
T cd03271 175 AQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHN 231 (261)
T ss_pred HHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 36778888887654446899999984 65556667777777652 45557776654
No 19
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=66.14 E-value=20 Score=24.15 Aligned_cols=50 Identities=10% Similarity=0.127 Sum_probs=35.2
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g 54 (63)
.|+++|..||. .+-+++++|+.. ++..-.+.+.+.+.++..+..++++..
T Consensus 152 ~qrv~laral~---~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH 203 (250)
T PRK14245 152 QQRLCIARAMA---VSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTH 203 (250)
T ss_pred HHHHHHHHHHh---cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 36777777875 477999999984 555556778888887654544666644
No 20
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=66.10 E-value=21 Score=23.28 Aligned_cols=50 Identities=8% Similarity=0.156 Sum_probs=34.8
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g 54 (63)
.++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++.-+..++++..
T Consensus 131 ~qrv~laral~~---~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th 182 (207)
T cd03369 131 RQLLCLARALLK---RPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAH 182 (207)
T ss_pred HHHHHHHHHHhh---CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeC
Confidence 467888888864 66999999994 555556677788887633444555543
No 21
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=65.93 E-value=17 Score=24.79 Aligned_cols=49 Identities=8% Similarity=0.171 Sum_probs=33.9
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEe
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARL 53 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~ 53 (63)
.|+++|..||.. +-+++|+|+.. ++..-...+.+.+.++..+..++++.
T Consensus 162 ~qrl~laral~~---~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~s 212 (257)
T cd03288 162 RQLFCLARAFVR---KSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIA 212 (257)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 467888888865 66999999984 55555566777777654454455554
No 22
>PRK10536 hypothetical protein; Provisional
Probab=63.56 E-value=14 Score=26.93 Aligned_cols=36 Identities=6% Similarity=-0.003 Sum_probs=26.7
Q ss_pred CCcEEEEecCCCCCCChHHHHHHHHhcCCCceeEEEecc
Q psy5946 17 QDDLHIVKDLVLPVDDPKYLENLVEERCSQVSLSARLGI 55 (63)
Q Consensus 17 q~~LiIvD~l~l~~~KTk~L~~~l~~~~~~~s~LiI~g~ 55 (63)
++.++|||++.--+ +..+...+...|.+ +.+|+.|.
T Consensus 176 ~~~~vIvDEaqn~~--~~~~k~~ltR~g~~-sk~v~~GD 211 (262)
T PRK10536 176 ENAVVILDEAQNVT--AAQMKMFLTRLGEN-VTVIVNGD 211 (262)
T ss_pred cCCEEEEechhcCC--HHHHHHHHhhcCCC-CEEEEeCC
Confidence 57899999986444 47888888888887 46666554
No 23
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=62.98 E-value=3.2 Score=27.72 Aligned_cols=43 Identities=21% Similarity=0.191 Sum_probs=25.1
Q ss_pred hcCCcEEEEecCCCCCCChHHHHHHHHhcCC-CceeEEEecccCCc
Q psy5946 15 LMQDDLHIVKDLVLPVDDPKYLENLVEERCS-QVSLSARLGIRDLQ 59 (63)
Q Consensus 15 ~~q~~LiIvD~l~l~~~KTk~L~~~l~~~~~-~~s~LiI~g~~~~~ 59 (63)
....+++|||+...- .+..|..+++...- +.++++|....||+
T Consensus 91 ~~~~~vliVDEasmv--~~~~~~~ll~~~~~~~~klilvGD~~QL~ 134 (196)
T PF13604_consen 91 LPKKDVLIVDEASMV--DSRQLARLLRLAKKSGAKLILVGDPNQLP 134 (196)
T ss_dssp -TSTSEEEESSGGG---BHHHHHHHHHHS-T-T-EEEEEE-TTSHH
T ss_pred CCcccEEEEeccccc--CHHHHHHHHHHHHhcCCEEEEECCcchhc
Confidence 345689999998522 33445555554333 33588888888875
No 24
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=62.31 E-value=27 Score=23.24 Aligned_cols=50 Identities=6% Similarity=0.118 Sum_probs=35.2
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecC--CCCCCChHHHHHHHHhcCCCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDL--VLPVDDPKYLENLVEERCSQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l--~l~~~KTk~L~~~l~~~~~~~s~LiI~g 54 (63)
.++++|..||.. +-+++++|+. .++..-.+.+.+.+.++.-+.+++++..
T Consensus 145 ~qrv~la~al~~---~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh 196 (238)
T cd03249 145 KQRIAIARALLR---NPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAH 196 (238)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeC
Confidence 356677777754 6699999999 4666677788888887653444666643
No 25
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=62.17 E-value=19 Score=24.24 Aligned_cols=49 Identities=10% Similarity=0.116 Sum_probs=34.7
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g 54 (63)
++++|..||-. +-+++|+|+.. ++..-.+.+.+.+.++..+..++++..
T Consensus 156 qrv~laral~~---~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH 206 (253)
T PRK14267 156 QRLVIARALAM---KPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTH 206 (253)
T ss_pred HHHHHHHHHhc---CCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEEC
Confidence 56677777754 67999999994 666667788888887644444666644
No 26
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=61.77 E-value=24 Score=23.10 Aligned_cols=49 Identities=8% Similarity=0.181 Sum_probs=33.7
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEe
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARL 53 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~ 53 (63)
.++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++.-+..++++.
T Consensus 145 ~qr~~laral~~---~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~s 195 (221)
T cd03244 145 RQLLCLARALLR---KSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIA 195 (221)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 467777778754 67899999994 66666677888888754333355543
No 27
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=61.66 E-value=25 Score=23.39 Aligned_cols=54 Identities=9% Similarity=0.124 Sum_probs=34.1
Q ss_pred hhhhhHHHHhhh-hcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEeccc
Q psy5946 3 IVLGLTSTLSIK-LMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLGIR 56 (63)
Q Consensus 3 R~lGLk~ALS~K-~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g~~ 56 (63)
+++++..||..- +...+++++|+.. ++..-...+.+.+.++..+..+++|.+..
T Consensus 120 qrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~ 176 (197)
T cd03278 120 ALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVITHRK 176 (197)
T ss_pred HHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEEECCH
Confidence 455566665432 2344899999995 55556677777887764444577776543
No 28
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=60.75 E-value=28 Score=21.82 Aligned_cols=48 Identities=17% Similarity=0.180 Sum_probs=34.6
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g 54 (63)
.|+++|..||.. +-+++++|+.. ++..-...+.+.++++ +..++++..
T Consensus 76 ~~rv~laral~~---~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th 125 (144)
T cd03221 76 KMRLALAKLLLE---NPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSH 125 (144)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEEC
Confidence 467888888865 66999999984 6665667777888875 344666654
No 29
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=60.55 E-value=29 Score=23.00 Aligned_cols=49 Identities=2% Similarity=0.063 Sum_probs=34.0
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEe
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARL 53 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~ 53 (63)
.++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++.-+..++++.
T Consensus 143 ~~rl~la~aL~~---~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~s 193 (236)
T cd03253 143 KQRVAIARAILK---NPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIA 193 (236)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEc
Confidence 367788888876 66999999994 66655677778887653243455554
No 30
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=60.42 E-value=23 Score=24.88 Aligned_cols=43 Identities=21% Similarity=0.099 Sum_probs=32.0
Q ss_pred HHHhhhhcCCcEEEEecCCCCCCChHHHHHHHHhc-CCCceeEEE
Q psy5946 9 STLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEER-CSQVSLSAR 52 (63)
Q Consensus 9 ~ALS~K~~q~~LiIvD~l~l~~~KTk~L~~~l~~~-~~~~s~LiI 52 (63)
.||+-=++..|++|||+..--+-|++.+.+.+++- .-++ .||.
T Consensus 92 ~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~k-plia 135 (179)
T COG1618 92 PALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKSGK-PLIA 135 (179)
T ss_pred HHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcCCC-cEEE
Confidence 35554445579999999998888999999999883 4553 4444
No 31
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=59.82 E-value=35 Score=21.78 Aligned_cols=49 Identities=12% Similarity=0.113 Sum_probs=35.0
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEecc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLGI 55 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g~ 55 (63)
.|+++|..||. .+-+++++|+.. ++..-.+.+.+.+.++ +..++++...
T Consensus 97 ~~rv~laral~---~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~ 147 (166)
T cd03223 97 QQRLAFARLLL---HKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHR 147 (166)
T ss_pred HHHHHHHHHHH---cCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCC
Confidence 46778888886 467999999994 6666667778888876 3346666543
No 32
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=59.71 E-value=27 Score=24.23 Aligned_cols=49 Identities=16% Similarity=0.184 Sum_probs=35.2
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecC--CCCCCChHHHHHHHHhcCCCceeEEEe
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDL--VLPVDDPKYLENLVEERCSQVSLSARL 53 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l--~l~~~KTk~L~~~l~~~~~~~s~LiI~ 53 (63)
.++++|..||. .+-+++|+|+. .++..-...+.+.+.++.-+..++++.
T Consensus 167 ~qrv~LAraL~---~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~s 217 (274)
T PRK14265 167 QQRLCIARAIA---MKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVT 217 (274)
T ss_pred HHHHHHHHHHh---hCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 36778888885 57799999998 466666778888888764343455554
No 33
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=59.69 E-value=24 Score=21.04 Aligned_cols=37 Identities=11% Similarity=-0.016 Sum_probs=28.1
Q ss_pred cEEEEecCCCCCCChHHHHHHHHhcCCC-ceeEEEecc
Q psy5946 19 DLHIVKDLVLPVDDPKYLENLVEERCSQ-VSLSARLGI 55 (63)
Q Consensus 19 ~LiIvD~l~l~~~KTk~L~~~l~~~~~~-~s~LiI~g~ 55 (63)
.++..++.....|++..+...++++|.. ..+++|+.+
T Consensus 122 ~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p~~~~~vgD~ 159 (176)
T PF13419_consen 122 EIISSDDVGSRKPDPDAYRRALEKLGIPPEEILFVGDS 159 (176)
T ss_dssp EEEEGGGSSSSTTSHHHHHHHHHHHTSSGGGEEEEESS
T ss_pred cccccchhhhhhhHHHHHHHHHHHcCCCcceEEEEeCC
Confidence 5556666777788889999999998877 467887644
No 34
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=59.62 E-value=31 Score=22.80 Aligned_cols=49 Identities=8% Similarity=0.119 Sum_probs=35.4
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecC--CCCCCChHHHHHHHHhcCCCceeEEEe
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDL--VLPVDDPKYLENLVEERCSQVSLSARL 53 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l--~l~~~KTk~L~~~l~~~~~~~s~LiI~ 53 (63)
.|+++|..||.. +-+++++|+. .++..-...+.+.+.++.-+..++++.
T Consensus 144 ~qrv~la~al~~---~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~s 194 (234)
T cd03251 144 RQRIAIARALLK---DPPILILDEATSALDTESERLVQAALERLMKNRTTFVIA 194 (234)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 367778888875 5689999998 477777888888888763344455554
No 35
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=59.24 E-value=20 Score=23.07 Aligned_cols=49 Identities=12% Similarity=0.060 Sum_probs=33.7
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCC-CceeEEEe
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCS-QVSLSARL 53 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~-~~s~LiI~ 53 (63)
.|+++|..||.. +-+++++|+.. ++..-.+.+.+.+.++.. +..++++.
T Consensus 110 ~qrl~la~al~~---~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~s 161 (182)
T cd03215 110 QQKVVLARWLAR---DPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLIS 161 (182)
T ss_pred HHHHHHHHHHcc---CCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 367777777765 66999999994 666667778888877532 44345544
No 36
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=58.55 E-value=35 Score=21.82 Aligned_cols=50 Identities=16% Similarity=0.058 Sum_probs=34.7
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g 54 (63)
.|+++|..||.. +-+++++|+.. ++..-.+.+.+.+.++.-+..++++..
T Consensus 104 ~qrv~laral~~---~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh 155 (178)
T cd03247 104 RQRLALARILLQ---DAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITH 155 (178)
T ss_pred HHHHHHHHHHhc---CCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEec
Confidence 467788888875 66999999984 666566777788877632334555543
No 37
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=57.93 E-value=21 Score=23.50 Aligned_cols=51 Identities=14% Similarity=0.133 Sum_probs=35.6
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhc-CCCceeEEEecc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEER-CSQVSLSARLGI 55 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~-~~~~s~LiI~g~ 55 (63)
.|+++|..||.. +-+++++|+.. ++..-.+.+.+.+.++ ..+.+++++...
T Consensus 133 ~qrl~la~al~~---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~ 186 (207)
T PRK13539 133 KRRVALARLLVS---NRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHI 186 (207)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 467888888876 56999999994 6665667777888764 234446666543
No 38
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=57.80 E-value=24 Score=23.78 Aligned_cols=51 Identities=14% Similarity=0.165 Sum_probs=34.7
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEecc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLGI 55 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g~ 55 (63)
.|+++|..||.. +-+++++|+.. ++..-.+.+.+.++++..+..++++...
T Consensus 154 ~qrl~laral~~---~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~ 206 (252)
T PRK14256 154 QQRLCIARTIAV---KPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHN 206 (252)
T ss_pred HHHHHHHHHHhc---CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECC
Confidence 367788888864 66899999994 5555566777778776434346666443
No 39
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=57.43 E-value=34 Score=24.17 Aligned_cols=50 Identities=4% Similarity=0.073 Sum_probs=35.2
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g 54 (63)
.++++|..||-. +.+++++|+.. ++..-.+.+.+.+..+..+..+++|..
T Consensus 144 ~qrl~LaRall~---~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH 195 (275)
T cd03289 144 KQLMCLARSVLS---KAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEH 195 (275)
T ss_pred HHHHHHHHHHhc---CCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEEC
Confidence 467778778765 67999999994 555556677888887644545666653
No 40
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=57.18 E-value=39 Score=22.65 Aligned_cols=49 Identities=10% Similarity=0.186 Sum_probs=33.4
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g 54 (63)
|+++|..||.. +-+++++|+.. ++..-.+.+.+.+.++..+..++++..
T Consensus 155 qrv~laral~~---~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH 205 (252)
T PRK14272 155 QRLCIARALAV---EPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTH 205 (252)
T ss_pred HHHHHHHHHhc---CCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 56667666665 66999999994 666566777788887654444555543
No 41
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=57.05 E-value=15 Score=21.79 Aligned_cols=37 Identities=19% Similarity=0.278 Sum_probs=25.2
Q ss_pred hhhHHHHhhhhcCC-------cEEEEecC--CCCCCChHHHHHHHH
Q psy5946 5 LGLTSTLSIKLMQD-------DLHIVKDL--VLPVDDPKYLENLVE 41 (63)
Q Consensus 5 lGLk~ALS~K~~q~-------~LiIvD~l--~l~~~KTk~L~~~l~ 41 (63)
+.|..||+.-+... .++++|+. .++....+.+.+.+.
T Consensus 44 l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~ 89 (90)
T PF13558_consen 44 LALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLR 89 (90)
T ss_dssp HHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHh
Confidence 45566666655553 89999998 566666676666664
No 42
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=56.99 E-value=23 Score=23.73 Aligned_cols=51 Identities=6% Similarity=-0.000 Sum_probs=35.4
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEecc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLGI 55 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g~ 55 (63)
.++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++..+..++++...
T Consensus 154 ~qrv~laral~~---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~ 206 (252)
T PRK14239 154 QQRVCIARVLAT---SPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRS 206 (252)
T ss_pred HHHHHHHHHHhc---CCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECC
Confidence 367778888864 66999999984 5665667778888876444446666443
No 43
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=56.88 E-value=26 Score=22.50 Aligned_cols=50 Identities=12% Similarity=0.109 Sum_probs=33.6
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCC--CceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCS--QVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~--~~s~LiI~g 54 (63)
.|+++|..||-. +-+++++|+.. ++..-.+.+.+.+.++.. +..++++..
T Consensus 103 ~qrl~laral~~---~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh 156 (180)
T cd03214 103 RQRVLLARALAQ---EPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLH 156 (180)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 356677777665 77999999994 665566777788877533 334555543
No 44
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=56.33 E-value=28 Score=23.72 Aligned_cols=50 Identities=12% Similarity=0.171 Sum_probs=34.0
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g 54 (63)
-++++|..||. .+.+++++|+.. ++..-.+.+.+.+.++..+..++++..
T Consensus 156 ~qrv~laral~---~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH 207 (259)
T PRK14260 156 QQRLCIARALA---IKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTH 207 (259)
T ss_pred HHHHHHHHHHh---cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 35677777774 577999999995 555556667777777543445666643
No 45
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=56.31 E-value=36 Score=22.87 Aligned_cols=49 Identities=14% Similarity=0.194 Sum_probs=34.5
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g 54 (63)
++++|..||. .+-+++++|+.. ++..-.+.+.+.+.++..+..++++..
T Consensus 153 qrv~laral~---~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH 203 (250)
T PRK14247 153 QRLCIARALA---FQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTH 203 (250)
T ss_pred HHHHHHHHHh---cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 5667777775 467999999994 666667788888887654544555543
No 46
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=56.25 E-value=31 Score=22.78 Aligned_cols=50 Identities=6% Similarity=0.087 Sum_probs=34.9
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g 54 (63)
.|+++|..||.. +-+++++|+.. ++..-.+.+.+.+.++.-+..++++..
T Consensus 156 ~qrv~laral~~---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh 207 (226)
T cd03248 156 KQRVAIARALIR---NPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAH 207 (226)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEEC
Confidence 467788888864 67999999984 666667777788877532334566543
No 47
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=56.18 E-value=28 Score=22.97 Aligned_cols=51 Identities=10% Similarity=0.023 Sum_probs=35.5
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhc--CCCceeEEEecc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEER--CSQVSLSARLGI 55 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~--~~~~s~LiI~g~ 55 (63)
.++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++ ..+..++++...
T Consensus 152 ~qrl~la~al~~---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 206 (228)
T PRK10584 152 QQRVALARAFNG---RPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHD 206 (228)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 367778888875 67999999994 6655667777788764 234457777544
No 48
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=56.13 E-value=33 Score=23.55 Aligned_cols=50 Identities=14% Similarity=0.161 Sum_probs=34.3
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g 54 (63)
-++++|..||.. +-+++++|+.. ++..-...+.+.+.++.-+..++++..
T Consensus 157 ~qrv~laral~~---~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH 208 (264)
T PRK14243 157 QQRLCIARAIAV---QPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTH 208 (264)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 356777777764 77999999984 555556677888877643434666543
No 49
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=56.13 E-value=23 Score=23.69 Aligned_cols=43 Identities=16% Similarity=0.135 Sum_probs=28.6
Q ss_pred hcCCcEEEEecCC--CCCCChH-HHHHHHHhcCC--CceeEEEecccC
Q psy5946 15 LMQDDLHIVKDLV--LPVDDPK-YLENLVEERCS--QVSLSARLGIRD 57 (63)
Q Consensus 15 ~~q~~LiIvD~l~--l~~~KTk-~L~~~l~~~~~--~~s~LiI~g~~~ 57 (63)
+.+-+++++|+.. ++..-.. .+.+.+.++.- +..++++.+..+
T Consensus 137 ~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~ 184 (204)
T cd03240 137 GSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE 184 (204)
T ss_pred ccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHH
Confidence 4577999999995 4444445 68888877532 435777766543
No 50
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=55.64 E-value=17 Score=22.96 Aligned_cols=37 Identities=16% Similarity=0.119 Sum_probs=20.4
Q ss_pred CCcEEEEecCC-CCCCChHHHHHHHHhcCCC-ceeEEEecccCCc
Q psy5946 17 QDDLHIVKDLV-LPVDDPKYLENLVEERCSQ-VSLSARLGIRDLQ 59 (63)
Q Consensus 17 q~~LiIvD~l~-l~~~KTk~L~~~l~~~~~~-~s~LiI~g~~~~~ 59 (63)
.=+++|||++. +.+ +..|. -+.++ +++++|+.+.|||
T Consensus 192 ~~d~vIvDEAsq~~e--~~~l~----~l~~~~~~~vlvGD~~QLp 230 (236)
T PF13086_consen 192 KFDVVIVDEASQITE--PEALI----PLSRAPKRIVLVGDPKQLP 230 (236)
T ss_dssp --SEEEETTGGGS-H--HHHHH----HHTTTBSEEEEEE-TTS--
T ss_pred cCCEEEEeCCCCcch--HHHHH----HHHHhCCEEEEECChhhcC
Confidence 45789999984 433 23233 22344 5799999999986
No 51
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=55.57 E-value=36 Score=22.17 Aligned_cols=49 Identities=16% Similarity=0.170 Sum_probs=34.6
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEe
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARL 53 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~ 53 (63)
.++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++.-+..++++.
T Consensus 136 ~qrv~la~al~~---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vs 186 (211)
T cd03264 136 RRRVGIAQALVG---DPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILST 186 (211)
T ss_pred HHHHHHHHHHhc---CCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 356777777765 67999999984 66666777888888764444455554
No 52
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=55.29 E-value=30 Score=22.95 Aligned_cols=55 Identities=9% Similarity=0.114 Sum_probs=33.1
Q ss_pred hhhhhHHHHhhh--h-----cCCcEEEEecCC--CCCCChHHHHHHHHhcCC-CceeEEEecccC
Q psy5946 3 IVLGLTSTLSIK--L-----MQDDLHIVKDLV--LPVDDPKYLENLVEERCS-QVSLSARLGIRD 57 (63)
Q Consensus 3 R~lGLk~ALS~K--~-----~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~-~~s~LiI~g~~~ 57 (63)
+++++..||... + .+-+++++|+.. ++..-...+.+.+.++.. +..+++|.+..+
T Consensus 130 ~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~ 194 (213)
T cd03279 130 FLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEE 194 (213)
T ss_pred HHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchH
Confidence 566777777543 2 245899999985 333334456666776543 345677765443
No 53
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=54.92 E-value=38 Score=22.98 Aligned_cols=50 Identities=4% Similarity=0.069 Sum_probs=34.8
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhc-CCCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEER-CSQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~-~~~~s~LiI~g 54 (63)
.|+++|..||.. +-+++++|+.. ++..-.+.+.+.+.++ ..+..+++|..
T Consensus 158 ~qrv~laral~~---~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH 210 (257)
T PRK10619 158 QQRVSIARALAM---EPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTH 210 (257)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 367777778776 66899999984 6665667777777765 34555666644
No 54
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=54.88 E-value=30 Score=23.85 Aligned_cols=51 Identities=20% Similarity=0.156 Sum_probs=35.2
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEecc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLGI 55 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g~ 55 (63)
-++++|..||-. +-+++++|+.. ++..-.+.+.+.+.++..+..++++...
T Consensus 173 ~qrv~laraL~~---~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~ 225 (271)
T PRK14238 173 QQRLCIARCLAI---EPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHN 225 (271)
T ss_pred HHHHHHHHHHHc---CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcC
Confidence 356777777754 67999999984 6666667777888776444446666543
No 55
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=54.69 E-value=31 Score=23.72 Aligned_cols=50 Identities=10% Similarity=0.163 Sum_probs=34.8
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g 54 (63)
.++++|..||-. .-+++++|+.. ++..-.+.+.+.+.++.-+..++++..
T Consensus 169 ~qrv~laral~~---~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH 220 (267)
T PRK14235 169 QQRLCIARAIAV---SPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTH 220 (267)
T ss_pred HHHHHHHHHHHc---CCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 366777777754 66999999994 666666778888887644444555543
No 56
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=54.58 E-value=27 Score=23.58 Aligned_cols=52 Identities=12% Similarity=0.204 Sum_probs=33.8
Q ss_pred hhhhhhHHHHhhhh-cCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEe
Q psy5946 2 SIVLGLTSTLSIKL-MQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARL 53 (63)
Q Consensus 2 vR~lGLk~ALS~K~-~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~ 53 (63)
.+++++..|+...+ ..-+++++|+.. ++..-.+.+.+.+..+.-+..+++|.
T Consensus 133 ~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs 187 (212)
T cd03274 133 KTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVIS 187 (212)
T ss_pred HHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 36778888886533 334899999985 55445667777777754333456665
No 57
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=54.51 E-value=41 Score=22.63 Aligned_cols=49 Identities=12% Similarity=0.209 Sum_probs=32.6
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g 54 (63)
++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++..+..+++|..
T Consensus 156 qrv~laral~~---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH 206 (251)
T PRK14244 156 QRLCIARAIAV---KPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTH 206 (251)
T ss_pred HHHHHHHHHhc---CCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 56667777764 66999999984 554445667777777644544666643
No 58
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=54.49 E-value=57 Score=21.16 Aligned_cols=48 Identities=2% Similarity=-0.051 Sum_probs=36.7
Q ss_pred hhHHHHhhhhcCCcEEEEecCCCCCCChH---HHHHHHHhcCCCceeEEEecc
Q psy5946 6 GLTSTLSIKLMQDDLHIVKDLVLPVDDPK---YLENLVEERCSQVSLSARLGI 55 (63)
Q Consensus 6 GLk~ALS~K~~q~~LiIvD~l~l~~~KTk---~L~~~l~~~~~~~s~LiI~g~ 55 (63)
.|++.|.....+.+.+.|-+.+-...||- .|+..+...| .++|+||.-
T Consensus 5 ~l~~~l~~~~~~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G--~rVllID~D 55 (204)
T TIGR01007 5 AIRTNIQFSGAEIKVLLITSVKPGEGKSTTSANIAVAFAQAG--YKTLLIDGD 55 (204)
T ss_pred HHHHHHhhhcCCCcEEEEecCCCCCCHHHHHHHHHHHHHhCC--CeEEEEeCC
Confidence 57888888888889999999988888865 5555566544 469999864
No 59
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=54.28 E-value=31 Score=23.23 Aligned_cols=49 Identities=12% Similarity=0.192 Sum_probs=34.4
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g 54 (63)
++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++..+..++++..
T Consensus 156 qrv~laral~~---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH 206 (253)
T PRK14242 156 QRLCIARALAV---EPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTH 206 (253)
T ss_pred HHHHHHHHHhc---CCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEe
Confidence 56777777754 66899999984 666667788888887644444566543
No 60
>COG0253 DapF Diaminopimelate epimerase [Amino acid transport and metabolism]
Probab=54.18 E-value=42 Score=24.56 Aligned_cols=45 Identities=9% Similarity=0.079 Sum_probs=31.9
Q ss_pred cCCcEEEEecCCCCCCChHHHHHHHHhcC--CC-ceeEEEe--cccCCcC
Q psy5946 16 MQDDLHIVKDLVLPVDDPKYLENLVEERC--SQ-VSLSARL--GIRDLQY 60 (63)
Q Consensus 16 ~q~~LiIvD~l~l~~~KTk~L~~~l~~~~--~~-~s~LiI~--g~~~~~~ 60 (63)
.+|+.+|||+.+-....|..++..+-.|. .| .-+|+|. .+++.+|
T Consensus 9 ~GNdfivvd~~~~~~~~~~~~a~~l~~r~~giGaDgvl~i~~p~s~~~d~ 58 (272)
T COG0253 9 LGNDFIVVDEFDKKDEETPELARALCDRHFGIGADGVLFVEPPRSPGADF 58 (272)
T ss_pred CCCcEEEEeccccccccCHHHHHHHHhcccCcCCceEEEEecCCCCCCCE
Confidence 57999999999877767777777777764 33 3588887 3444443
No 61
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=53.81 E-value=26 Score=23.29 Aligned_cols=52 Identities=15% Similarity=0.023 Sum_probs=34.4
Q ss_pred hhhhhhHHHHhhhhcC--CcEEEEecCC--CCCCChHHHHHHHHhcC-CCceeEEEeccc
Q psy5946 2 SIVLGLTSTLSIKLMQ--DDLHIVKDLV--LPVDDPKYLENLVEERC-SQVSLSARLGIR 56 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q--~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~~~s~LiI~g~~ 56 (63)
.++++|..||.. + -+++++|+.. ++..-.+.+.+.+.++. .+..+++|.+..
T Consensus 93 ~qrl~laral~~---~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~ 149 (176)
T cd03238 93 LQRVKLASELFS---EPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNL 149 (176)
T ss_pred HHHHHHHHHHhh---CCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 356777777765 4 5899999984 55555666777777642 355577776543
No 62
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=53.58 E-value=31 Score=22.47 Aligned_cols=49 Identities=8% Similarity=0.007 Sum_probs=33.0
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhc-CCCceeEEEe
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEER-CSQVSLSARL 53 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~-~~~~s~LiI~ 53 (63)
.|+++|..||.. +-+++|+|+.. ++..-...+.+.+.++ ..+..++++.
T Consensus 133 ~~rv~laral~~---~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~s 184 (200)
T PRK13540 133 KRQVALLRLWMS---KAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTS 184 (200)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 467788888876 66999999994 5555556677777764 3454444443
No 63
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=53.54 E-value=35 Score=22.91 Aligned_cols=50 Identities=16% Similarity=0.186 Sum_probs=34.2
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEecc
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLGI 55 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g~ 55 (63)
++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++.-+..++++...
T Consensus 152 qrv~laral~~---~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~ 203 (249)
T PRK14253 152 QRLCIARTIAM---EPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHS 203 (249)
T ss_pred HHHHHHHHHHc---CCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 56777777754 56899999994 5555566777788876434456666543
No 64
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=53.39 E-value=28 Score=22.72 Aligned_cols=50 Identities=12% Similarity=0.110 Sum_probs=34.2
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC-CCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC-SQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~~~s~LiI~g 54 (63)
-++++|..||. .+-+++++|+.. ++..-.+.+.+.+.++. .+..++++..
T Consensus 138 ~qrv~la~al~---~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH 190 (213)
T cd03235 138 QQRVLLARALV---QDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTH 190 (213)
T ss_pred HHHHHHHHHHH---cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 36677888886 477999999984 66655667777777653 3444566543
No 65
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=52.61 E-value=46 Score=22.43 Aligned_cols=49 Identities=14% Similarity=0.138 Sum_probs=34.4
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g 54 (63)
++++|..||.. +-+++|+|+.. ++..-...+.+.+.++.-+..++++..
T Consensus 157 qrv~laral~~---~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH 207 (254)
T PRK14273 157 QRLCIARTLAI---EPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTH 207 (254)
T ss_pred HHHHHHHHHHc---CCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 56677777754 66999999984 666667778888887644444666644
No 66
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=52.59 E-value=32 Score=22.65 Aligned_cols=51 Identities=8% Similarity=0.092 Sum_probs=35.5
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC-CCceeEEEecc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC-SQVSLSARLGI 55 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~~~s~LiI~g~ 55 (63)
.++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++. .+..++++...
T Consensus 155 ~qrl~laral~~---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~ 208 (224)
T TIGR02324 155 QQRVNIARGFIA---DYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHD 208 (224)
T ss_pred HHHHHHHHHHhc---CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 467788888864 66899999994 66666677778887753 35446666543
No 67
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=52.31 E-value=33 Score=22.41 Aligned_cols=50 Identities=8% Similarity=0.099 Sum_probs=34.2
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhc-CCCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEER-CSQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~-~~~~s~LiI~g 54 (63)
-|+++|..||. .+-+++++|+.. ++..-.+.+.+.+.++ ..+..+++|..
T Consensus 142 ~qrv~laral~---~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH 194 (218)
T cd03266 142 RQKVAIARALV---HDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTH 194 (218)
T ss_pred HHHHHHHHHHh---cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 36677777775 477999999994 6666667777788775 23444566543
No 68
>PRK13695 putative NTPase; Provisional
Probab=52.24 E-value=48 Score=21.09 Aligned_cols=47 Identities=17% Similarity=0.049 Sum_probs=27.7
Q ss_pred HHHHhhhh-cCCcEEEEecCCCCCCChHHHHHHHHhc-CCCceeEEEec
Q psy5946 8 TSTLSIKL-MQDDLHIVKDLVLPVDDPKYLENLVEER-CSQVSLSARLG 54 (63)
Q Consensus 8 k~ALS~K~-~q~~LiIvD~l~l~~~KTk~L~~~l~~~-~~~~s~LiI~g 54 (63)
.+.++.+. ...+++++|++...+..+..+.+.+.+. ..+..++++..
T Consensus 86 ~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h 134 (174)
T PRK13695 86 GIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLH 134 (174)
T ss_pred HHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEEC
Confidence 33444443 4789999999764455555555566554 45543555543
No 69
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=52.10 E-value=35 Score=22.22 Aligned_cols=50 Identities=8% Similarity=0.122 Sum_probs=34.0
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC-CCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC-SQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~~~s~LiI~g 54 (63)
-|+++|..||.. +-+++++|+.. ++..-.+.+.+.+.++. .+..++++..
T Consensus 114 ~qrv~la~al~~---~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH 166 (192)
T cd03232 114 RKRLTIGVELAA---KPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIH 166 (192)
T ss_pred hHHHHHHHHHhc---CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEc
Confidence 367777777776 56999999994 66656677777777753 3544555543
No 70
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=52.09 E-value=44 Score=21.48 Aligned_cols=51 Identities=4% Similarity=0.102 Sum_probs=34.2
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC-CCceeEEEecc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC-SQVSLSARLGI 55 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~~~s~LiI~g~ 55 (63)
.++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++. -+..++++...
T Consensus 133 ~qrv~laral~~---~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~ 186 (190)
T TIGR01166 133 KKRVAIAGAVAM---RPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHD 186 (190)
T ss_pred HHHHHHHHHHhc---CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeec
Confidence 356777777764 67999999984 66656677777777642 23346666543
No 71
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=51.97 E-value=50 Score=21.48 Aligned_cols=50 Identities=8% Similarity=0.068 Sum_probs=34.6
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhc-CCCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEER-CSQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~-~~~~s~LiI~g 54 (63)
.++++|..||.. +-+++|+|+.. ++..-...+.+.+.++ ..+..++++..
T Consensus 143 ~qrl~la~al~~---~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH 195 (214)
T TIGR02673 143 QQRVAIARAIVN---SPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATH 195 (214)
T ss_pred HHHHHHHHHHhC---CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 366777777754 66999999984 6666667777888775 23544666654
No 72
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=51.83 E-value=42 Score=22.33 Aligned_cols=51 Identities=6% Similarity=0.143 Sum_probs=34.3
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC--CCceeEEEecc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC--SQVSLSARLGI 55 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~--~~~s~LiI~g~ 55 (63)
.|+++|..||.. +-+++|+|+.. ++..-.+.+.+.+..+. .+..++++...
T Consensus 143 ~qrv~laral~~---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~ 197 (225)
T PRK10247 143 KQRISLIRNLQF---MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHD 197 (225)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 467788888875 66999999984 55555566777777642 34446666543
No 73
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=51.82 E-value=46 Score=22.84 Aligned_cols=49 Identities=10% Similarity=0.250 Sum_probs=35.0
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g 54 (63)
|+++|..||-. +-+++++|+.. ++..-.+.+.+.+.++..+..++++..
T Consensus 160 qrl~laral~~---~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh 210 (257)
T PRK14246 160 QRLTIARALAL---KPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSH 210 (257)
T ss_pred HHHHHHHHHHc---CCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEEC
Confidence 56677777755 56999999994 566667888899988765544555543
No 74
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=51.78 E-value=39 Score=21.74 Aligned_cols=39 Identities=18% Similarity=0.110 Sum_probs=31.8
Q ss_pred CcEEEEecCCCCCCChHHHHHHHHhcCCC-ceeEEEeccc
Q psy5946 18 DDLHIVKDLVLPVDDPKYLENLVEERCSQ-VSLSARLGIR 56 (63)
Q Consensus 18 ~~LiIvD~l~l~~~KTk~L~~~l~~~~~~-~s~LiI~g~~ 56 (63)
+.+++.++....-|.++.+...++.+|.. ..+++|+.+.
T Consensus 142 d~v~~s~~~g~~KP~~~~f~~~~~~~g~~p~~~l~VgD~~ 181 (229)
T COG1011 142 DAVFISEDVGVAKPDPEIFEYALEKLGVPPEEALFVGDSL 181 (229)
T ss_pred heEEEecccccCCCCcHHHHHHHHHcCCCcceEEEECCCh
Confidence 35778888888999999999999999986 3589987543
No 75
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=51.77 E-value=21 Score=24.88 Aligned_cols=51 Identities=8% Similarity=0.132 Sum_probs=36.0
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCC--CceeEEEecc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCS--QVSLSARLGI 55 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~--~~s~LiI~g~ 55 (63)
.++++|..||.. +-+++++|+.. ++..-.+.+.+.+..+.. +..++++...
T Consensus 149 ~qrv~laral~~---~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~ 203 (282)
T PRK13640 149 KQRVAIAGILAV---EPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHD 203 (282)
T ss_pred HHHHHHHHHHHc---CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 367777777765 77999999984 666667778888877532 4456666543
No 76
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=51.31 E-value=46 Score=22.32 Aligned_cols=50 Identities=12% Similarity=0.173 Sum_probs=34.2
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g 54 (63)
.++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++..+..++++..
T Consensus 152 ~qrv~laral~~---~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH 203 (250)
T PRK14240 152 QQRLCIARALAV---EPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTH 203 (250)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEe
Confidence 356777777776 56899999994 555556677778877654544555543
No 77
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=51.23 E-value=23 Score=24.67 Aligned_cols=50 Identities=10% Similarity=0.103 Sum_probs=33.4
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCC--CceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCS--QVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~--~~s~LiI~g 54 (63)
.|+++|..||- .+-+++|+|+.. ++..-...+.+.+.++.. +.+++++..
T Consensus 147 ~qrl~laraL~---~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH 200 (283)
T PRK13636 147 KKRVAIAGVLV---MEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATH 200 (283)
T ss_pred HHHHHHHHHHH---cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 46788888884 477999999994 554445556677766532 445677643
No 78
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=51.18 E-value=53 Score=21.80 Aligned_cols=48 Identities=8% Similarity=0.143 Sum_probs=33.8
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEe
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARL 53 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~ 53 (63)
++++|..||-. +-+++++|+.. ++..-.+.+.+.+.++.-+.+++++.
T Consensus 145 qrv~laral~~---~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~s 194 (237)
T cd03252 145 QRIAIARALIH---NPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIA 194 (237)
T ss_pred HHHHHHHHHhh---CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 56677777764 67999999994 76667777888887764344455554
No 79
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=51.18 E-value=20 Score=23.47 Aligned_cols=49 Identities=20% Similarity=0.229 Sum_probs=32.1
Q ss_pred hhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEe
Q psy5946 4 VLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARL 53 (63)
Q Consensus 4 ~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~ 53 (63)
+++|..|+.. .....+.|+|++. ++....+.+.+.+.++.=+..++++.
T Consensus 146 ~Lal~lA~~~-~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~T 196 (220)
T PF02463_consen 146 ALALLLALQR-YKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITT 196 (220)
T ss_dssp HHHHHHHHHT-CS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-
T ss_pred cccccccccc-ccccccccccccccccccccccccccccccccccccccccc
Confidence 4667777544 5678899999995 66777788888898876333355554
No 80
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=50.97 E-value=36 Score=21.97 Aligned_cols=51 Identities=10% Similarity=0.021 Sum_probs=35.4
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC-CCceeEEEecc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC-SQVSLSARLGI 55 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~~~s~LiI~g~ 55 (63)
.++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++. -+..++++.+.
T Consensus 140 ~qr~~laral~~---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~ 193 (206)
T TIGR03608 140 QQRVALARAILK---DPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHD 193 (206)
T ss_pred HHHHHHHHHHHc---CCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 467788888876 66999999994 66666677777777653 24346666543
No 81
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=50.91 E-value=32 Score=22.67 Aligned_cols=37 Identities=14% Similarity=0.053 Sum_probs=22.1
Q ss_pred cCCcEEEEecCCCCCCChHHHHHHHHh-cCCCceeEEE
Q psy5946 16 MQDDLHIVKDLVLPVDDPKYLENLVEE-RCSQVSLSAR 52 (63)
Q Consensus 16 ~q~~LiIvD~l~l~~~KTk~L~~~l~~-~~~~~s~LiI 52 (63)
.+.+++|+|++.--+.+.+.+.+.+.+ +.-+..++-+
T Consensus 94 ~~~~liviDEIG~mEl~~~~F~~~v~~~l~s~~~vi~v 131 (168)
T PF03266_consen 94 SSSDLIVIDEIGKMELKSPGFREAVEKLLDSNKPVIGV 131 (168)
T ss_dssp HCCHEEEE---STTCCC-CHHHHHHHHHHCTTSEEEEE
T ss_pred CCCCEEEEeccchhhhcCHHHHHHHHHHHcCCCcEEEE
Confidence 678899999998777777777777776 4532234443
No 82
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=50.73 E-value=40 Score=21.91 Aligned_cols=50 Identities=16% Similarity=0.162 Sum_probs=34.3
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhc-CCCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEER-CSQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~-~~~~s~LiI~g 54 (63)
-++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++ .-+..++++..
T Consensus 132 ~qrv~laral~~---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH 184 (205)
T cd03226 132 KQRLAIAAALLS---GKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITH 184 (205)
T ss_pred HHHHHHHHHHHh---CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 356777777765 66899999984 6665667788888775 23444566543
No 83
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=50.59 E-value=43 Score=21.86 Aligned_cols=50 Identities=8% Similarity=0.100 Sum_probs=34.7
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC-CCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC-SQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~~~s~LiI~g 54 (63)
.|+++|..||.. +-+++++|+.. ++..-.+.+.+.+.++. .+..++++..
T Consensus 117 ~qrv~laral~~---~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh 169 (194)
T cd03213 117 RKRVSIALELVS---NPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIH 169 (194)
T ss_pred HHHHHHHHHHHc---CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 367778888775 56899999994 66666777888888753 2444555543
No 84
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=50.44 E-value=44 Score=22.42 Aligned_cols=49 Identities=10% Similarity=0.095 Sum_probs=32.5
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g 54 (63)
++++|..||.. +-+++++|+.. ++..--+.+.+.+.++..+..+++|..
T Consensus 154 qr~~laral~~---~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH 204 (251)
T PRK14251 154 QRICIARALAV---RPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTH 204 (251)
T ss_pred HHHHHHHHHhc---CCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 56777777764 77999999984 555445566677776533434666644
No 85
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=50.36 E-value=38 Score=23.00 Aligned_cols=49 Identities=12% Similarity=0.184 Sum_probs=34.2
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g 54 (63)
++++|..||.. +-+++++|+.. ++..-...+.+.+.++..+..++++..
T Consensus 155 qrv~laral~~---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH 205 (258)
T PRK14241 155 QRLCIARAIAV---EPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTH 205 (258)
T ss_pred HHHHHHHHHhc---CCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 56777777765 56999999984 665556777888887644444566544
No 86
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=50.22 E-value=66 Score=21.02 Aligned_cols=50 Identities=8% Similarity=0.117 Sum_probs=34.4
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecC--CCCCCChHHHHHHHHhcCCCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDL--VLPVDDPKYLENLVEERCSQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l--~l~~~KTk~L~~~l~~~~~~~s~LiI~g 54 (63)
-+++.|..||.. +-+++|+|+. .++..-.+.+.+.+.++.-+..++++..
T Consensus 146 ~qrl~la~al~~---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH 197 (220)
T cd03245 146 RQAVALARALLN---DPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITH 197 (220)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeC
Confidence 356677777765 5689999998 4777777888888887532334555543
No 87
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=50.13 E-value=33 Score=21.34 Aligned_cols=49 Identities=16% Similarity=0.173 Sum_probs=30.8
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCC-CceeEEEe
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCS-QVSLSARL 53 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~-~~s~LiI~ 53 (63)
.|++.+..|+.. +.+++++|+.. ++..--..+.+.+..+.. +..++++.
T Consensus 86 ~~r~~l~~~l~~---~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~s 137 (157)
T cd00267 86 RQRVALARALLL---NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVT 137 (157)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 466777777776 47999999995 444444566666665422 33355543
No 88
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=50.08 E-value=35 Score=27.48 Aligned_cols=51 Identities=12% Similarity=0.062 Sum_probs=39.9
Q ss_pred hhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEecc
Q psy5946 4 VLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLGI 55 (63)
Q Consensus 4 ~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g~ 55 (63)
.|+|++++|.+- +..-+|+|+.+ +.-.-.....+.+.+++-+.-||.|.+-
T Consensus 441 mLAlk~i~~~~~-~~ptlIFDEVD~GIsG~~A~aVg~~L~~Ls~~~QVl~VTHl 493 (557)
T COG0497 441 MLALKVILSRKD-DTPTLIFDEVDTGISGRVAQAVGKKLRRLSEHHQVLCVTHL 493 (557)
T ss_pred HHHHHHHHhccC-CCCeEEEecccCCCChHHHHHHHHHHHHHhcCceEEEEecH
Confidence 489999999997 44588899985 6666677788888988866569988653
No 89
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=50.01 E-value=38 Score=22.21 Aligned_cols=51 Identities=16% Similarity=0.119 Sum_probs=34.1
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC--CCceeEEEecc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC--SQVSLSARLGI 55 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~--~~~s~LiI~g~ 55 (63)
.|+++|..||. .+-+++++|+.. ++..-.+.+.+.+.++. .+..++++...
T Consensus 134 ~qrl~laral~---~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~ 188 (213)
T TIGR01277 134 RQRVALARCLV---RPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHH 188 (213)
T ss_pred HHHHHHHHHHh---cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 46777777775 477999999994 55555566777777652 34446666543
No 90
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=49.68 E-value=40 Score=23.04 Aligned_cols=50 Identities=18% Similarity=0.153 Sum_probs=34.2
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEecc
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLGI 55 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g~ 55 (63)
++++|..||- .+-+++++|+.. ++..-.+.+.+.+.++.-+..++++...
T Consensus 171 qrl~laral~---~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~ 222 (268)
T PRK14248 171 QRLCIARTLA---MKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHN 222 (268)
T ss_pred HHHHHHHHHh---CCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeC
Confidence 5677777775 467999999984 6665666777778776334346666543
No 91
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=49.56 E-value=47 Score=22.09 Aligned_cols=51 Identities=10% Similarity=0.039 Sum_probs=35.3
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC-C-CceeEEEecc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC-S-QVSLSARLGI 55 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~-~~s~LiI~g~ 55 (63)
-++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++. . +..++++...
T Consensus 151 ~qrl~la~al~~---~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~ 205 (233)
T PRK11629 151 RQRVAIARALVN---NPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHD 205 (233)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 367778888876 66999999984 66666677778887752 2 4446666543
No 92
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=49.50 E-value=23 Score=24.62 Aligned_cols=36 Identities=17% Similarity=0.085 Sum_probs=22.6
Q ss_pred CCcEEEEecCCCCCCChHHHHHHHHhcCCCceeEEEecc
Q psy5946 17 QDDLHIVKDLVLPVDDPKYLENLVEERCSQVSLSARLGI 55 (63)
Q Consensus 17 q~~LiIvD~l~l~~~KTk~L~~~l~~~~~~~s~LiI~g~ 55 (63)
.+..+|||+++. ..+..+...+.-.|.+ |-+|+.|.
T Consensus 119 ~~~~iIvDEaQN--~t~~~~k~ilTR~g~~-skii~~GD 154 (205)
T PF02562_consen 119 DNAFIIVDEAQN--LTPEELKMILTRIGEG-SKIIITGD 154 (205)
T ss_dssp -SEEEEE-SGGG----HHHHHHHHTTB-TT--EEEEEE-
T ss_pred cceEEEEecccC--CCHHHHHHHHcccCCC-cEEEEecC
Confidence 367899999863 3578888888888887 46666553
No 93
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=49.04 E-value=29 Score=29.22 Aligned_cols=55 Identities=18% Similarity=0.099 Sum_probs=39.3
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhc-CCCceeEEEeccc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEER-CSQVSLSARLGIR 56 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~-~~~~s~LiI~g~~ 56 (63)
-+++.|..||..+....+++|+|+.. ++....+.|.+.+.++ ..+.++++|.+..
T Consensus 834 ~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~ 891 (924)
T TIGR00630 834 AQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNL 891 (924)
T ss_pred HHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 35777888887655566899999994 6666777788888775 2455577776544
No 94
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=48.95 E-value=27 Score=29.40 Aligned_cols=53 Identities=13% Similarity=0.029 Sum_probs=38.8
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhc-CCCceeEEEeccc
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEER-CSQVSLSARLGIR 56 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~-~~~~s~LiI~g~~ 56 (63)
+++.|..||..... +.++|+|+.. +.......|.+.+.++ ..|+++++|.+..
T Consensus 494 QRv~LA~aL~~~~~-~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~ 549 (924)
T TIGR00630 494 QRIRLATQIGSGLT-GVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDE 549 (924)
T ss_pred HHHHHHHHHhhCCC-CcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence 56777788876432 4899999984 7777788888888876 3466788886543
No 95
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=48.72 E-value=62 Score=20.98 Aligned_cols=49 Identities=10% Similarity=0.098 Sum_probs=33.2
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhc-CCCceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEER-CSQVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~-~~~~s~LiI~g 54 (63)
++++|..||. .+-+++++|+.. ++..-.+.+.+.+.++ ..+..++++..
T Consensus 143 qrv~laral~---~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH 194 (214)
T cd03292 143 QRVAIARAIV---NSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATH 194 (214)
T ss_pred HHHHHHHHHH---cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 5677777775 467999999984 6555566777777765 23444666644
No 96
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=48.60 E-value=33 Score=22.69 Aligned_cols=50 Identities=14% Similarity=0.191 Sum_probs=33.5
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC-CCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC-SQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~~~s~LiI~g 54 (63)
.++++|..||-. +-+++++|+.. ++..-.+.+.+.+.++. .+..++++..
T Consensus 149 ~qrv~la~al~~---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH 201 (236)
T cd03219 149 QRRLEIARALAT---DPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEH 201 (236)
T ss_pred HHHHHHHHHHhc---CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEec
Confidence 356777777764 67899999994 55555667777777643 4544555543
No 97
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=48.58 E-value=18 Score=29.31 Aligned_cols=43 Identities=12% Similarity=0.180 Sum_probs=28.7
Q ss_pred hcCCcEEEEecCCCCCCChHHHHHHHHhc-CCCceeEEEecccCCc
Q psy5946 15 LMQDDLHIVKDLVLPVDDPKYLENLVEER-CSQVSLSARLGIRDLQ 59 (63)
Q Consensus 15 ~~q~~LiIvD~l~l~~~KTk~L~~~l~~~-~~~~s~LiI~g~~~~~ 59 (63)
....+++|||++..- .+..+..+++.. ..+..+++|...+|||
T Consensus 437 ~~~~~llIvDEasMv--~~~~~~~Ll~~~~~~~~kliLVGD~~QLp 480 (744)
T TIGR02768 437 LSDKDVLVIDEAGMV--GSRQMARVLKEAEEAGAKVVLVGDPEQLQ 480 (744)
T ss_pred CCCCcEEEEECcccC--CHHHHHHHHHHHHhcCCEEEEECChHHcc
Confidence 457899999998633 245566666632 3454588887778776
No 98
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=48.47 E-value=55 Score=20.84 Aligned_cols=50 Identities=14% Similarity=0.145 Sum_probs=34.6
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhc-CCCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEER-CSQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~-~~~~s~LiI~g 54 (63)
-++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++ ..+..++++..
T Consensus 102 ~qrv~la~al~~---~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh 154 (173)
T cd03246 102 RQRLGLARALYG---NPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAH 154 (173)
T ss_pred HHHHHHHHHHhc---CCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 367778888775 67999999984 6666677777888765 23444566543
No 99
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=48.05 E-value=51 Score=22.32 Aligned_cols=50 Identities=20% Similarity=0.191 Sum_probs=35.0
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC-CCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC-SQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~~~s~LiI~g 54 (63)
.|+++|..||.. +-+++++|+.. ++..-.+.+.+.+.++. .+..++++..
T Consensus 143 ~qrl~la~al~~---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH 195 (256)
T TIGR03873 143 RQRVHVARALAQ---EPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALH 195 (256)
T ss_pred HHHHHHHHHHhc---CCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 467888888877 45999999994 66656677778887752 3444566644
No 100
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=47.97 E-value=32 Score=29.02 Aligned_cols=54 Identities=15% Similarity=0.068 Sum_probs=38.3
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhc-CCCceeEEEeccc
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEER-CSQVSLSARLGIR 56 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~-~~~~s~LiI~g~~ 56 (63)
+++.|..||..+...++++|+|+.. ++......|.+.|.++ ..+.++++|.+..
T Consensus 837 QRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~ 893 (943)
T PRK00349 837 QRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNL 893 (943)
T ss_pred HHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 5677778887654444899999994 7666777888888775 3455677776543
No 101
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=47.91 E-value=40 Score=23.76 Aligned_cols=50 Identities=12% Similarity=0.156 Sum_probs=34.7
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g 54 (63)
.|+++|..||- .+-+++++|+.. ++..-.+.+.+.+..+.-+..++++.+
T Consensus 139 ~qrv~la~al~---~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH 190 (301)
T TIGR03522 139 RQRVGLAQALI---HDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTH 190 (301)
T ss_pred HHHHHHHHHHh---cCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcC
Confidence 57888888884 477999999994 555555677777777633434555543
No 102
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=47.27 E-value=49 Score=21.03 Aligned_cols=52 Identities=17% Similarity=0.167 Sum_probs=31.2
Q ss_pred hhhhhHHHHhh-hhcCCcEEEEecCC--CCCCChHHHHHHHHhc-CCCceeEEEec
Q psy5946 3 IVLGLTSTLSI-KLMQDDLHIVKDLV--LPVDDPKYLENLVEER-CSQVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~-K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~-~~~~s~LiI~g 54 (63)
++..|..+|.. .+...+++++|++. ++...-..+.+.+.+. .-+..++++.+
T Consensus 84 ~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH 139 (162)
T cd03227 84 ELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITH 139 (162)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcC
Confidence 55677777773 22477999999995 3433445566666553 22334555543
No 103
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=47.23 E-value=47 Score=26.91 Aligned_cols=42 Identities=19% Similarity=0.109 Sum_probs=31.6
Q ss_pred cCCcEEEEecCCCCCCChHHHHHHHHhcCCCceeEEEecccCCc
Q psy5946 16 MQDDLHIVKDLVLPVDDPKYLENLVEERCSQVSLSARLGIRDLQ 59 (63)
Q Consensus 16 ~q~~LiIvD~l~l~~~KTk~L~~~l~~~~~~~s~LiI~g~~~~~ 59 (63)
.+.+++|||++..- .+..+..+++...-+.++++|...+|||
T Consensus 415 ~~~~llIvDEaSMv--d~~~~~~Ll~~~~~~~rlilvGD~~QLp 456 (720)
T TIGR01448 415 IDCDLLIVDESSMM--DTWLALSLLAALPDHARLLLVGDTDQLP 456 (720)
T ss_pred ccCCEEEEeccccC--CHHHHHHHHHhCCCCCEEEEECcccccc
Confidence 35789999998643 4566777888766555688888888887
No 104
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=47.19 E-value=35 Score=22.43 Aligned_cols=53 Identities=6% Similarity=0.154 Sum_probs=33.2
Q ss_pred hhhhhHHHHhh-hhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCC-ceeEEEecc
Q psy5946 3 IVLGLTSTLSI-KLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQ-VSLSARLGI 55 (63)
Q Consensus 3 R~lGLk~ALS~-K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~-~s~LiI~g~ 55 (63)
++++|..||.. ++..-+++++|+.. ++..-.+.+.+.+.++... ..+++|...
T Consensus 101 ~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~ 157 (178)
T cd03239 101 SLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLK 157 (178)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 56677777753 34667999999995 4444455566677665332 346666543
No 105
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=47.19 E-value=46 Score=22.33 Aligned_cols=50 Identities=14% Similarity=0.215 Sum_probs=33.7
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g 54 (63)
.++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++.-+..++++..
T Consensus 152 ~qr~~la~al~~---~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH 203 (250)
T PRK14262 152 QQRLCIARALAV---EPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTH 203 (250)
T ss_pred HHHHHHHHHHhC---CCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeC
Confidence 366777778776 56899999984 555555677777777543444566644
No 106
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=47.07 E-value=39 Score=23.15 Aligned_cols=51 Identities=14% Similarity=0.192 Sum_probs=35.0
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC--CCceeEEEecc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC--SQVSLSARLGI 55 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~--~~~s~LiI~g~ 55 (63)
.|+++|..||-. +-+++++|+.. ++..-.+.+.+.+.++. -+..++++...
T Consensus 148 ~qrl~laral~~---~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~ 202 (269)
T PRK13648 148 KQRVAIAGVLAL---NPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHD 202 (269)
T ss_pred HHHHHHHHHHHc---CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 467788888765 56999999994 66656677777777652 23346666543
No 107
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=46.96 E-value=53 Score=22.03 Aligned_cols=49 Identities=10% Similarity=0.167 Sum_probs=33.1
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g 54 (63)
++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++.-+..++++..
T Consensus 153 qrv~laral~~---~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh 203 (250)
T PRK14266 153 QRLCIARTIAV---SPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTH 203 (250)
T ss_pred HHHHHHHHHHc---CCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 56677777764 66999999984 555556777777776533434666644
No 108
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=46.83 E-value=45 Score=23.30 Aligned_cols=49 Identities=14% Similarity=0.232 Sum_probs=33.3
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g 54 (63)
++++|..||-. +-+++|+|+.. ++..-.+.+.+.+.++.-+..++++..
T Consensus 189 qrv~LAraL~~---~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH 239 (286)
T PRK14275 189 QRLCVARTLAV---EPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTH 239 (286)
T ss_pred HHHHHHHHHhc---CCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 56777777765 56899999984 655556677777876543434666543
No 109
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=46.81 E-value=67 Score=21.48 Aligned_cols=50 Identities=6% Similarity=0.076 Sum_probs=34.3
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhc-CCCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEER-CSQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~-~~~~s~LiI~g 54 (63)
.++++|..||.. +-+++|+|+.. ++..-.+.+.+.+.++ ..+..++++..
T Consensus 150 ~qrv~la~al~~---~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH 202 (250)
T PRK11264 150 QQRVAIARALAM---RPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTH 202 (250)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 367778888865 56899999994 6655566777777764 24545666644
No 110
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=46.78 E-value=56 Score=21.16 Aligned_cols=52 Identities=17% Similarity=0.121 Sum_probs=33.7
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhc-CCCceeEEEecccCC
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEER-CSQVSLSARLGIRDL 58 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~-~~~~s~LiI~g~~~~ 58 (63)
|+++|..||.. +-+++++|+.. ++..-.+.+.+.+.++ .-+..++++. ++..
T Consensus 134 qrv~la~al~~---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~s-H~~~ 188 (198)
T TIGR01189 134 RRLALARLWLS---RAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTT-HQDL 188 (198)
T ss_pred HHHHHHHHHhc---CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEE-cccc
Confidence 56667777665 66999999994 6666667777888764 3344344444 4433
No 111
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=46.77 E-value=31 Score=24.55 Aligned_cols=42 Identities=19% Similarity=0.234 Sum_probs=32.6
Q ss_pred ChhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCC
Q psy5946 1 MSIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCS 45 (63)
Q Consensus 1 ~vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~ 45 (63)
|-|++++..||..+ -+++|+|+.. ++..--+.+.+.+.++.-
T Consensus 141 ~kqrl~ia~aL~~~---P~lliLDEPt~GLDp~~~~~~~~~l~~l~~ 184 (293)
T COG1131 141 MKQRLSIALALLHD---PELLILDEPTSGLDPESRREIWELLRELAK 184 (293)
T ss_pred HHHHHHHHHHHhcC---CCEEEECCCCcCCCHHHHHHHHHHHHHHHh
Confidence 45789999999874 4999999984 666667777888887654
No 112
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=46.64 E-value=42 Score=23.24 Aligned_cols=51 Identities=6% Similarity=0.120 Sum_probs=34.9
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCC--CceeEEEecc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCS--QVSLSARLGI 55 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~--~~s~LiI~g~ 55 (63)
-|+++|..||.. +-+++|+|+.. ++..-.+.+.+.+.++.. +..++++...
T Consensus 143 ~qrl~laraL~~---~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~ 197 (277)
T PRK13652 143 KKRVAIAGVIAM---EPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQ 197 (277)
T ss_pred HHHHHHHHHHHc---CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 467888888876 66899999984 555456677777776532 3356766544
No 113
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=46.37 E-value=41 Score=22.45 Aligned_cols=52 Identities=6% Similarity=0.022 Sum_probs=36.4
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC--CCceeEEEeccc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC--SQVSLSARLGIR 56 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~--~~~s~LiI~g~~ 56 (63)
.|+++|..||.. +-+++++|+.. ++..-.+.+.+.+.++. .+..++++....
T Consensus 136 ~qrl~laral~~---~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~ 191 (232)
T cd03300 136 QQRVAIARALVN---EPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQ 191 (232)
T ss_pred HHHHHHHHHHhc---CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 367778888775 66999999994 66667777888887642 344577765443
No 114
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=46.33 E-value=51 Score=21.65 Aligned_cols=51 Identities=10% Similarity=0.082 Sum_probs=34.7
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC--CCceeEEEecc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC--SQVSLSARLGI 55 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~--~~~s~LiI~g~ 55 (63)
-++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++. -+..++++...
T Consensus 137 ~qrl~la~al~~---~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~ 191 (220)
T cd03293 137 RQRVALARALAV---DPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHD 191 (220)
T ss_pred HHHHHHHHHHHc---CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 356777777765 56999999984 66666677777787652 24456666544
No 115
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=46.28 E-value=37 Score=22.50 Aligned_cols=51 Identities=8% Similarity=0.115 Sum_probs=34.4
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC--CCceeEEEecc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC--SQVSLSARLGI 55 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~--~~~s~LiI~g~ 55 (63)
-|+++|..||.. +-+++++|+.. ++..-.+.+.+.+.++. .+..++++...
T Consensus 146 ~qrv~la~al~~---~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~ 200 (233)
T cd03258 146 KQRVGIARALAN---NPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHE 200 (233)
T ss_pred HHHHHHHHHHhc---CCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 366777777754 66899999984 66666677778887652 24346666543
No 116
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=46.26 E-value=64 Score=21.92 Aligned_cols=49 Identities=12% Similarity=0.146 Sum_probs=33.7
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g 54 (63)
++++|..||-. +-+++++|+.. ++..-...+.+.+.++.-+..++++..
T Consensus 161 qrv~laral~~---~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH 211 (258)
T PRK14268 161 QRLCIARTLAV---KPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTH 211 (258)
T ss_pred HHHHHHHHHHc---CCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEEC
Confidence 56677777755 67999999984 666666777788887643444566544
No 117
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=46.25 E-value=36 Score=21.82 Aligned_cols=50 Identities=10% Similarity=0.151 Sum_probs=32.6
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCC--CceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCS--QVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~--~~s~LiI~g 54 (63)
.|++.|..||.. +-+++|+|+.. ++..-...+.+.+.++.. +..++++..
T Consensus 106 ~qr~~la~al~~---~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH 159 (178)
T cd03229 106 QQRVALARALAM---DPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTH 159 (178)
T ss_pred HHHHHHHHHHHC---CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 366777777765 66999999984 555555667777776532 334555543
No 118
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=46.22 E-value=53 Score=22.25 Aligned_cols=49 Identities=12% Similarity=0.154 Sum_probs=33.2
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g 54 (63)
++++|..||-. +-+++++|+.. ++..-.+.+.+.+.++.-+..+++|..
T Consensus 162 qrv~laral~~---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH 212 (259)
T PRK14274 162 QRLCIARALAT---NPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTH 212 (259)
T ss_pred HHHHHHHHHhc---CCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEc
Confidence 55666666654 66899999994 666666778888887644444555543
No 119
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=46.10 E-value=36 Score=30.99 Aligned_cols=54 Identities=15% Similarity=0.020 Sum_probs=40.3
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhc-CCCceeEEEecc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEER-CSQVSLSARLGI 55 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~-~~~~s~LiI~g~ 55 (63)
-+++.|..||..+..+.+++|+|+.. ++....+.|.+.+.++ ..|..+++|.+.
T Consensus 815 ~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHd 871 (1809)
T PRK00635 815 IQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHN 871 (1809)
T ss_pred HHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 36788999998777889999999984 6666677777777765 245557777654
No 120
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=45.88 E-value=52 Score=22.36 Aligned_cols=53 Identities=8% Similarity=0.107 Sum_probs=33.9
Q ss_pred hhhhhHHHHhhh-hcCCcEEEEecCC--CCCCChHHHHHHHHhcC-CCceeEEEecc
Q psy5946 3 IVLGLTSTLSIK-LMQDDLHIVKDLV--LPVDDPKYLENLVEERC-SQVSLSARLGI 55 (63)
Q Consensus 3 R~lGLk~ALS~K-~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~~~s~LiI~g~ 55 (63)
++++|..|+... +..-+++++|+.. ++..-...+.+.+.++. .+..+++|.+.
T Consensus 162 ~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~ 218 (247)
T cd03275 162 TMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLK 218 (247)
T ss_pred HHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECC
Confidence 556677776643 3346899999985 55544556777777753 24456777654
No 121
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=45.75 E-value=54 Score=22.11 Aligned_cols=50 Identities=14% Similarity=0.172 Sum_probs=33.2
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEecc
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLGI 55 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g~ 55 (63)
++++|..||-. +-+++++|+.. ++..-.+.+.+.+.++.-+..++++...
T Consensus 156 qrv~laral~~---~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~ 207 (253)
T PRK14261 156 QRLCIARTLAV---NPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHN 207 (253)
T ss_pred HHHHHHHHHhc---CCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcC
Confidence 55666666654 67999999994 5555566777778776434456666543
No 122
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=45.53 E-value=65 Score=21.05 Aligned_cols=50 Identities=16% Similarity=0.105 Sum_probs=33.3
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC--CCceeEEEecc
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC--SQVSLSARLGI 55 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~--~~~s~LiI~g~ 55 (63)
++++|..||- .+-+++++|+.. ++..-.+.+.+.+.++. .+..++++.+.
T Consensus 148 qrv~laral~---~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~ 201 (221)
T TIGR02211 148 QRVAIARALV---NQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHD 201 (221)
T ss_pred HHHHHHHHHh---CCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 5566666665 467999999984 66666677777787652 34446666543
No 123
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=45.46 E-value=56 Score=22.83 Aligned_cols=51 Identities=10% Similarity=0.115 Sum_probs=34.2
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC-CCceeEEEecc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC-SQVSLSARLGI 55 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~~~s~LiI~g~ 55 (63)
.|+++|..||-. +-+++++|+.. ++..-.+.+.+.+..+. .+..++++.+.
T Consensus 150 kqrvaiA~aL~~---~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd 203 (288)
T PRK13643 150 MRRVAIAGILAM---EPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHL 203 (288)
T ss_pred HHHHHHHHHHHh---CCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 366777777754 77999999984 55545566777777652 45457777544
No 124
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=45.26 E-value=44 Score=21.83 Aligned_cols=49 Identities=10% Similarity=0.123 Sum_probs=33.4
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCC--CceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCS--QVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~--~~s~LiI~g 54 (63)
++++|..||-. +-+++++|+.. ++..-.+.+.+.+.++.- +..++++..
T Consensus 147 qrv~la~al~~---~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH 199 (218)
T cd03255 147 QRVAIARALAN---DPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTH 199 (218)
T ss_pred HHHHHHHHHcc---CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 56677777764 66999999994 666566777777877532 434666654
No 125
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=45.25 E-value=58 Score=21.62 Aligned_cols=53 Identities=11% Similarity=0.135 Sum_probs=32.9
Q ss_pred hhhhhhHHHHhh-hhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEecc
Q psy5946 2 SIVLGLTSTLSI-KLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLGI 55 (63)
Q Consensus 2 vR~lGLk~ALS~-K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g~ 55 (63)
.++++|..||.. ....-+++++|+.. ++..-.+.+.+.+.++.-+ ..+|+..+
T Consensus 164 ~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~-~~ii~~~h 219 (243)
T cd03272 164 KSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDG-AQFITTTF 219 (243)
T ss_pred HHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCC-CEEEEEec
Confidence 367778888754 23446899999995 5555556666777764223 34444433
No 126
>KOG3062|consensus
Probab=45.01 E-value=24 Score=26.31 Aligned_cols=23 Identities=30% Similarity=0.306 Sum_probs=20.6
Q ss_pred hhhHHHHhhhhcCCcEEEEecCC
Q psy5946 5 LGLTSTLSIKLMQDDLHIVKDLV 27 (63)
Q Consensus 5 lGLk~ALS~K~~q~~LiIvD~l~ 27 (63)
-.|++|.+--+.+++++|||+++
T Consensus 61 g~L~S~v~R~Lsk~~iVI~DslN 83 (281)
T KOG3062|consen 61 GKLRSAVDRSLSKGDIVIVDSLN 83 (281)
T ss_pred HHHHHHHHhhcccCcEEEEeccc
Confidence 46889999999999999999986
No 127
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=44.67 E-value=38 Score=28.65 Aligned_cols=52 Identities=13% Similarity=0.004 Sum_probs=38.2
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecC--CCCCCChHHHHHHHHhc-CCCceeEEEecc
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDL--VLPVDDPKYLENLVEER-CSQVSLSARLGI 55 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l--~l~~~KTk~L~~~l~~~-~~~~s~LiI~g~ 55 (63)
+++.|..||..... ++++|+|+. .+....+..|.+.+.++ ..|+.+++|...
T Consensus 496 QRv~LA~aL~~~~~-~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~ 550 (943)
T PRK00349 496 QRIRLATQIGSGLT-GVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHD 550 (943)
T ss_pred HHHHHHHHHhhCCC-CcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 56777788876432 489999998 47777888888888876 356667777654
No 128
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=44.54 E-value=33 Score=25.34 Aligned_cols=27 Identities=15% Similarity=0.273 Sum_probs=21.8
Q ss_pred CCcEEEEecC--CCCCCChHHHHHHHHhc
Q psy5946 17 QDDLHIVKDL--VLPVDDPKYLENLVEER 43 (63)
Q Consensus 17 q~~LiIvD~l--~l~~~KTk~L~~~l~~~ 43 (63)
+..++++||+ +++....+.|.+.+.+.
T Consensus 302 ~~pilLLDD~~seLD~~~r~~l~~~l~~~ 330 (365)
T TIGR00611 302 EYPILLLDDVASELDDQRRRLLAELLQSL 330 (365)
T ss_pred CCCEEEEcCchhccCHHHHHHHHHHHhhc
Confidence 4689999999 57777788888888765
No 129
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=44.49 E-value=55 Score=21.37 Aligned_cols=48 Identities=13% Similarity=0.093 Sum_probs=33.4
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC-CCceeEEEe
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC-SQVSLSARL 53 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~~~s~LiI~ 53 (63)
++++|..||- .+-+++++|+.. ++..-.+.+.+.+.++. .+..++++.
T Consensus 139 qrv~laral~---~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~s 189 (222)
T cd03224 139 QMLAIARALM---SRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVE 189 (222)
T ss_pred HHHHHHHHHh---cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 5667777775 467999999994 66767778888887753 343455554
No 130
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=44.27 E-value=53 Score=22.61 Aligned_cols=50 Identities=12% Similarity=0.135 Sum_probs=33.7
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g 54 (63)
-++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++.-+..++++..
T Consensus 160 ~qrl~laral~~---~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH 211 (269)
T PRK14259 160 QQRLCIARTIAI---EPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTH 211 (269)
T ss_pred HHHHHHHHHHhc---CCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 356777777765 66999999984 555566777788876532334555543
No 131
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=44.00 E-value=84 Score=21.28 Aligned_cols=53 Identities=9% Similarity=0.154 Sum_probs=32.8
Q ss_pred hhhhhHHHHhhhh-cCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEecc
Q psy5946 3 IVLGLTSTLSIKL-MQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLGI 55 (63)
Q Consensus 3 R~lGLk~ALS~K~-~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g~ 55 (63)
+++++..||..=+ ..-+++++|+.. ++....+.+.+.+.++.-+..+++|.+-
T Consensus 173 qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~ 228 (251)
T cd03273 173 SLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLK 228 (251)
T ss_pred HHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 4556666665312 234899999984 5555677777777775334346776544
No 132
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=43.91 E-value=53 Score=22.41 Aligned_cols=49 Identities=12% Similarity=0.165 Sum_probs=32.9
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g 54 (63)
++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++..+..+++|..
T Consensus 168 qrv~laral~~---~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth 218 (265)
T PRK14252 168 QRLCIARALAT---DPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTH 218 (265)
T ss_pred HHHHHHHHHHc---CCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEec
Confidence 55666666665 66899999984 555556677777777644434666644
No 133
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=43.83 E-value=55 Score=21.31 Aligned_cols=51 Identities=10% Similarity=0.053 Sum_probs=34.7
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC--CCceeEEEecc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC--SQVSLSARLGI 55 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~--~~~s~LiI~g~ 55 (63)
-|++++..||. .+-+++++|+.. ++..-.+.+.+.+.++. .+..++++...
T Consensus 134 ~qrv~ia~al~---~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 188 (211)
T cd03298 134 RQRVALARVLV---RDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQ 188 (211)
T ss_pred HHHHHHHHHHh---cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 36777888886 477999999994 66666667777777642 34346666543
No 134
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=43.46 E-value=59 Score=20.68 Aligned_cols=51 Identities=12% Similarity=0.096 Sum_probs=34.2
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCC-CceeEEEecc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCS-QVSLSARLGI 55 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~-~~s~LiI~g~ 55 (63)
.|+++|..||.. +-+++++|+.. ++..-.+.+.+.+.++.- +..++++...
T Consensus 88 ~qrl~laral~~---~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~ 141 (163)
T cd03216 88 RQMVEIARALAR---NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHR 141 (163)
T ss_pred HHHHHHHHHHhc---CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 467777777776 56999999994 665556677777776532 4346666443
No 135
>PRK12753 transketolase; Reviewed
Probab=43.45 E-value=73 Score=25.65 Aligned_cols=42 Identities=10% Similarity=-0.158 Sum_probs=27.7
Q ss_pred hhhcCCcEE-EEecCC--CCCC----ChHHHHHHHHhcCCCceeE-EEeccc
Q psy5946 13 IKLMQDDLH-IVKDLV--LPVD----DPKYLENLVEERCSQVSLS-ARLGIR 56 (63)
Q Consensus 13 ~K~~q~~Li-IvD~l~--l~~~----KTk~L~~~l~~~~~~~s~L-iI~g~~ 56 (63)
...+-++|+ |+|+=. ++.+ -+..+.+.++.+||. ++ .|||++
T Consensus 171 ~~~kL~nLi~ivd~N~~~i~~~~~~~~~~~~~~~f~a~Gw~--~~~~vDGhD 220 (663)
T PRK12753 171 GTLGLGKLIGFYDHNGISIDGETEGWFTDDTAKRFEAYHWH--VIHEIDGHD 220 (663)
T ss_pred HHHCCCCEEEEEECCCCcCCCChhhhcChhHHHHHHHcCCe--EEceeCCCC
Confidence 344556766 777643 3322 245778899999996 77 589975
No 136
>PRK05642 DNA replication initiation factor; Validated
Probab=43.25 E-value=49 Score=22.59 Aligned_cols=46 Identities=17% Similarity=0.024 Sum_probs=28.1
Q ss_pred HhhhhcCCcEEEEecCCCCCCChH---HHHHHHHhcCCCceeEEEeccc
Q psy5946 11 LSIKLMQDDLHIVKDLVLPVDDPK---YLENLVEERCSQVSLSARLGIR 56 (63)
Q Consensus 11 LS~K~~q~~LiIvD~l~l~~~KTk---~L~~~l~~~~~~~s~LiI~g~~ 56 (63)
+..++.+.+++|+||+.....+++ .|-.++..+--....+++.+..
T Consensus 91 ~~~~~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~ 139 (234)
T PRK05642 91 LLDNLEQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASK 139 (234)
T ss_pred HHHhhhhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCC
Confidence 445677889999999986655554 3555555432222356665543
No 137
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=43.07 E-value=63 Score=22.51 Aligned_cols=53 Identities=9% Similarity=0.119 Sum_probs=36.3
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC--CCceeEEEecccC
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC--SQVSLSARLGIRD 57 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~--~~~s~LiI~g~~~ 57 (63)
.|+++|..||.. +-+++++|+.. ++..-...+.+.+.++. .+..+++|....+
T Consensus 151 ~qrv~laraL~~---~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~ 207 (286)
T PRK13646 151 MRKIAIVSILAM---NPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN 207 (286)
T ss_pred HHHHHHHHHHHh---CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 467788888865 67999999994 55555566777777652 3445777765543
No 138
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=42.83 E-value=58 Score=21.90 Aligned_cols=50 Identities=14% Similarity=0.168 Sum_probs=34.1
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g 54 (63)
.++++|..||.. +-+++++|+.. ++..-...+.+.+.++.-+..++++..
T Consensus 153 ~qrv~laral~~---~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH 204 (251)
T PRK14270 153 QQRLCIARTIAV---KPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTH 204 (251)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEc
Confidence 367778888864 56899999994 666566777777776522334666654
No 139
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=42.76 E-value=60 Score=21.63 Aligned_cols=50 Identities=12% Similarity=0.096 Sum_probs=33.1
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC--CCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC--SQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~--~~~s~LiI~g 54 (63)
-++++|..||-. +-+++++|+.. ++..-.+.+.+.+.++. .+..++++..
T Consensus 138 ~qrl~laral~~---~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH 191 (236)
T TIGR03864 138 RRRVEIARALLH---RPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATH 191 (236)
T ss_pred HHHHHHHHHHhc---CCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 366777777764 66999999994 55555566777777642 3444555543
No 140
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=42.52 E-value=45 Score=23.38 Aligned_cols=52 Identities=6% Similarity=0.062 Sum_probs=35.1
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC--CCceeEEEeccc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC--SQVSLSARLGIR 56 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~--~~~s~LiI~g~~ 56 (63)
.++++|..||.. +-+++|+|+.. ++..-.+.+.+.+.++. .+..+++|....
T Consensus 151 ~qrv~lAraL~~---~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~ 206 (290)
T PRK13634 151 MRRVAIAGVLAM---EPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSM 206 (290)
T ss_pred HHHHHHHHHHHc---CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 467888888864 77999999994 55555566667776652 344577775443
No 141
>PRK10908 cell division protein FtsE; Provisional
Probab=42.45 E-value=61 Score=21.34 Aligned_cols=49 Identities=12% Similarity=0.066 Sum_probs=32.6
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC-CCceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC-SQVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~~~s~LiI~g 54 (63)
++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++. .+..++++..
T Consensus 144 qrv~laral~~---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH 195 (222)
T PRK10908 144 QRVGIARAVVN---KPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATH 195 (222)
T ss_pred HHHHHHHHHHc---CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 56677777765 56899999984 55545567777777652 3444566544
No 142
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=42.39 E-value=62 Score=21.14 Aligned_cols=50 Identities=10% Similarity=0.058 Sum_probs=34.0
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhc-CCCceeEEEecc
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEER-CSQVSLSARLGI 55 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~-~~~~s~LiI~g~ 55 (63)
++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++ ..+..+++|...
T Consensus 145 qrv~laral~~---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~ 197 (216)
T TIGR00960 145 QRVAIARAIVH---KPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHD 197 (216)
T ss_pred HHHHHHHHHhc---CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 56777777765 56999999994 6665667777777765 224446666543
No 143
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=42.09 E-value=63 Score=21.55 Aligned_cols=50 Identities=6% Similarity=0.117 Sum_probs=33.1
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCC-CceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCS-QVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~-~~s~LiI~g 54 (63)
.++++|..||-. +-+++|+|+.. ++..-.+.+.+.+.++.. +..++++..
T Consensus 147 ~qrv~laral~~---~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh 199 (242)
T PRK11124 147 QQRVAIARALMM---EPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTH 199 (242)
T ss_pred HHHHHHHHHHhc---CCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 366777777766 56899999984 555556677777776522 444555543
No 144
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=41.99 E-value=64 Score=22.14 Aligned_cols=50 Identities=12% Similarity=0.111 Sum_probs=33.8
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g 54 (63)
.|+++|..||-. +-+++++|+.. ++..-.+.+.+.+.++.-+..++++..
T Consensus 169 ~qrl~laral~~---~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH 220 (267)
T PRK14237 169 QQRLCIARAIAV---KPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTH 220 (267)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 356777777765 55899999984 555556677777877643444566544
No 145
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=41.91 E-value=54 Score=22.73 Aligned_cols=50 Identities=12% Similarity=0.134 Sum_probs=34.3
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC--CCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC--SQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~--~~~s~LiI~g 54 (63)
-|+++|..||- .+-+++++|+.. ++..-.+.+.+.+.++. .+..++++..
T Consensus 150 ~qrv~laral~---~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH 203 (280)
T PRK13633 150 KQRVAIAGILA---MRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITH 203 (280)
T ss_pred HHHHHHHHHHH---cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 46777777774 467999999984 66666667777777652 3445677643
No 146
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=41.91 E-value=78 Score=22.13 Aligned_cols=50 Identities=12% Similarity=0.180 Sum_probs=34.0
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g 54 (63)
-++++|..||. .+-+++++|+.. ++..-.+.+.+.+.++.-+..++++..
T Consensus 186 ~qrv~LAraL~---~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH 237 (285)
T PRK14254 186 QQRLCIARAIA---PDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTH 237 (285)
T ss_pred HHHHHHHHHHH---cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 35677777775 466899999984 666566777788877522234666654
No 147
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=41.88 E-value=53 Score=24.01 Aligned_cols=53 Identities=19% Similarity=0.172 Sum_probs=41.0
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecC--CCCCCChHHHHHHHHhcC--CCceeEEEecccCC
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDL--VLPVDDPKYLENLVEERC--SQVSLSARLGIRDL 58 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l--~l~~~KTk~L~~~l~~~~--~~~s~LiI~g~~~~ 58 (63)
|+|-+..||- .+-+|+.+|+. .+....+..+.+.+.++. .+-++|+|.+.+++
T Consensus 156 R~LEIArALa---~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~ 212 (250)
T COG0411 156 RRLEIARALA---TQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKL 212 (250)
T ss_pred HHHHHHHHHh---cCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHH
Confidence 5666666664 57799999998 477778999999999865 44579999887765
No 148
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=41.87 E-value=61 Score=22.30 Aligned_cols=51 Identities=14% Similarity=0.148 Sum_probs=33.5
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEecc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLGI 55 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g~ 55 (63)
.|+++|..||-. +-+++|+|+.. ++..--+.+.+.+.++..+..++++...
T Consensus 174 ~qrv~laral~~---~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~ 226 (272)
T PRK14236 174 QQRLVIARAIAI---EPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHN 226 (272)
T ss_pred HHHHHHHHHHHC---CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCC
Confidence 366777777754 77999999984 5554556677777766434445555433
No 149
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=41.75 E-value=64 Score=21.67 Aligned_cols=51 Identities=10% Similarity=0.119 Sum_probs=34.2
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC--CCceeEEEecc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC--SQVSLSARLGI 55 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~--~~~s~LiI~g~ 55 (63)
-++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++. .+..++++...
T Consensus 137 ~qrl~la~al~~---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~ 191 (241)
T PRK14250 137 AQRVSIARTLAN---NPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHN 191 (241)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 367778888864 67999999994 55555566677777642 34446666543
No 150
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=41.44 E-value=78 Score=19.20 Aligned_cols=35 Identities=6% Similarity=-0.083 Sum_probs=24.9
Q ss_pred EEEEecCCCCCCChHHHHHHHHhcCCCceeEEEecc
Q psy5946 20 LHIVKDLVLPVDDPKYLENLVEERCSQVSLSARLGI 55 (63)
Q Consensus 20 LiIvD~l~l~~~KTk~L~~~l~~~~~~~s~LiI~g~ 55 (63)
++.-++.. ..|++..+...+++++..+.+++|+.+
T Consensus 109 i~~~~~~~-~Kp~~~~~~~~~~~~~~~~~~l~iGDs 143 (154)
T TIGR01549 109 ILGSDEFG-AKPEPEIFLAALESLGLPPEVLHVGDN 143 (154)
T ss_pred EEecCCCC-CCcCHHHHHHHHHHcCCCCCEEEEeCC
Confidence 33344445 678889999999999987557777543
No 151
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=41.38 E-value=70 Score=24.25 Aligned_cols=50 Identities=12% Similarity=0.115 Sum_probs=33.9
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC-CCceeEEEecc
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC-SQVSLSARLGI 55 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~~~s~LiI~g~ 55 (63)
++++|.-|| +++-+++|+|+.. ++..-.+.+.+.+.++. .+..+++|.+.
T Consensus 461 qrl~lARal---l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~ 513 (544)
T TIGR01842 461 QRIALARAL---YGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHR 513 (544)
T ss_pred HHHHHHHHH---hcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCC
Confidence 567777777 4577999999994 66656666777777653 34445565443
No 152
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=41.26 E-value=52 Score=21.98 Aligned_cols=51 Identities=12% Similarity=0.087 Sum_probs=34.2
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC--CCceeEEEecc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC--SQVSLSARLGI 55 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~--~~~s~LiI~g~ 55 (63)
.++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++. .+..++++...
T Consensus 142 ~qrl~la~al~~---~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~ 196 (239)
T cd03296 142 RQRVALARALAV---EPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHD 196 (239)
T ss_pred HHHHHHHHHHhc---CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 366777777755 66899999984 65556667777777652 24446666543
No 153
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=41.17 E-value=32 Score=24.49 Aligned_cols=26 Identities=8% Similarity=-0.187 Sum_probs=21.8
Q ss_pred CCCChHHHHHHHHhcCCC-ceeEEEec
Q psy5946 29 PVDDPKYLENLVEERCSQ-VSLSARLG 54 (63)
Q Consensus 29 ~~~KTk~L~~~l~~~~~~-~s~LiI~g 54 (63)
..||+..+...++++|.+ .++++||.
T Consensus 85 ~~pk~~~i~~~~~~l~i~~~~~vfidD 111 (320)
T TIGR01686 85 WGPKSESLRKIAKKLNLGTDSFLFIDD 111 (320)
T ss_pred cCchHHHHHHHHHHhCCCcCcEEEECC
Confidence 358999999999999987 57888853
No 154
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=41.14 E-value=48 Score=21.70 Aligned_cols=49 Identities=14% Similarity=0.155 Sum_probs=32.7
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCC--CceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCS--QVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~--~~s~LiI~g 54 (63)
++++|..||-. +-+++++|+.. ++..-.+.+.+.+.++.- +..++++..
T Consensus 152 qrv~laral~~---~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH 204 (228)
T cd03257 152 QRVAIARALAL---NPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITH 204 (228)
T ss_pred HHHHHHHHHhc---CCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 56677777754 67999999994 555556777777776532 334566543
No 155
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=40.73 E-value=44 Score=21.79 Aligned_cols=51 Identities=12% Similarity=0.048 Sum_probs=34.6
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC--CCceeEEEecc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC--SQVSLSARLGI 55 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~--~~~s~LiI~g~ 55 (63)
-++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++. .+..++++...
T Consensus 136 ~qrl~la~al~~---~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 190 (213)
T cd03259 136 QQRVALARALAR---EPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHD 190 (213)
T ss_pred HHHHHHHHHHhc---CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 356777777765 56899999984 66556677778887752 24446666543
No 156
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=40.30 E-value=60 Score=21.06 Aligned_cols=50 Identities=10% Similarity=0.151 Sum_probs=33.3
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCC-CceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCS-QVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~-~~s~LiI~g 54 (63)
.++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++.- +..++++..
T Consensus 140 ~qrv~laral~~---~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH 192 (211)
T cd03225 140 KQRVAIAGVLAM---DPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTH 192 (211)
T ss_pred HHHHHHHHHHhc---CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 356777777754 66899999994 665556677777776422 434666643
No 157
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=40.25 E-value=55 Score=23.23 Aligned_cols=40 Identities=15% Similarity=0.090 Sum_probs=30.7
Q ss_pred hhhHHHHhhhhcCCcEEE-EecCCCCCCChHHHHHHHHhcC
Q psy5946 5 LGLTSTLSIKLMQDDLHI-VKDLVLPVDDPKYLENLVEERC 44 (63)
Q Consensus 5 lGLk~ALS~K~~q~~LiI-vD~l~l~~~KTk~L~~~l~~~~ 44 (63)
-+|...+-+|...|.+++ +||-+.+..++.+-...++.+.
T Consensus 21 ~al~n~l~ar~~~G~~ilRieDtd~~r~~~~~~~~i~~dL~ 61 (239)
T cd00808 21 TALFNYLFARKHGGKFILRIEDTDQERSVPEAEEAILEALK 61 (239)
T ss_pred HHHHHHHHHHHcCCeEEEEECcCCCCCCchHHHHHHHHHHH
Confidence 356777889999999999 9998877777776666655543
No 158
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=40.20 E-value=64 Score=21.67 Aligned_cols=50 Identities=14% Similarity=0.049 Sum_probs=33.3
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhc--CCCceeEEEecc
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEER--CSQVSLSARLGI 55 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~--~~~~s~LiI~g~ 55 (63)
++++|..||- .+-+++++|+.. ++..-.+.+.+.+.++ ..+..++++.+.
T Consensus 155 qrv~laral~---~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~ 208 (253)
T TIGR02323 155 QRLQIARNLV---TRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHD 208 (253)
T ss_pred HHHHHHHHHh---cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 5677777775 466999999984 5555566676777664 234446666543
No 159
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=40.17 E-value=56 Score=21.23 Aligned_cols=50 Identities=4% Similarity=-0.045 Sum_probs=32.9
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCC--CceeEEEecc
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCS--QVSLSARLGI 55 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~--~~s~LiI~g~ 55 (63)
|+++|..||-. +-+++++|+.. ++..-.+.+.+.+.++.- +..++++...
T Consensus 137 qr~~laral~~---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~ 190 (213)
T cd03301 137 QRVALGRAIVR---EPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHD 190 (213)
T ss_pred HHHHHHHHHhc---CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 56677777754 66899999994 555555667777776532 3346666543
No 160
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=40.05 E-value=77 Score=21.66 Aligned_cols=51 Identities=16% Similarity=0.120 Sum_probs=34.2
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC--CCceeEEEecc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC--SQVSLSARLGI 55 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~--~~~s~LiI~g~ 55 (63)
.|+++|..||-. +-+++++|+.. ++..-.+.+.+.+.++. .+..++++...
T Consensus 149 ~qrv~laral~~---~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~ 203 (265)
T PRK10253 149 RQRAWIAMVLAQ---ETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHD 203 (265)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 366777777765 77999999984 55555666777777642 34456776544
No 161
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=40.03 E-value=90 Score=20.97 Aligned_cols=50 Identities=18% Similarity=0.198 Sum_probs=33.0
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEecc
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLGI 55 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g~ 55 (63)
++.+|..||-. +-+++++|+.. ++..-.+.+.+.+.++..+..+++|...
T Consensus 149 qrv~laral~~---~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~ 200 (246)
T PRK14269 149 QRLCIARALAI---KPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHN 200 (246)
T ss_pred HHHHHHHHHhc---CCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 45666666654 66999999984 5554556777777775445456666543
No 162
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=39.73 E-value=80 Score=21.18 Aligned_cols=49 Identities=12% Similarity=0.182 Sum_probs=32.6
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g 54 (63)
++++|..||-. +-+++++|+.. ++..-...+.+.+.++.-+..++++..
T Consensus 151 qrv~laral~~---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH 201 (247)
T TIGR00972 151 QRLCIARALAV---EPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTH 201 (247)
T ss_pred HHHHHHHHHhc---CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEec
Confidence 56677777764 66999999984 555556677777776533334566543
No 163
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=39.50 E-value=66 Score=22.14 Aligned_cols=50 Identities=12% Similarity=0.183 Sum_probs=33.2
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC-CCceeEEEecc
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC-SQVSLSARLGI 55 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~~~s~LiI~g~ 55 (63)
++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++. -+..++++...
T Consensus 152 qrv~la~al~~---~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~ 204 (280)
T PRK13649 152 RRVAIAGILAM---EPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHL 204 (280)
T ss_pred HHHHHHHHHHc---CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecc
Confidence 56677777765 66999999984 55555667777777653 24446666543
No 164
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=39.36 E-value=33 Score=27.88 Aligned_cols=25 Identities=4% Similarity=-0.108 Sum_probs=22.0
Q ss_pred CCChHHHHHHHHhcCCC-ceeEEEec
Q psy5946 30 VDDPKYLENLVEERCSQ-VSLSARLG 54 (63)
Q Consensus 30 ~~KTk~L~~~l~~~~~~-~s~LiI~g 54 (63)
.||+..+++..+++|+| .|.+|||.
T Consensus 310 ~~K~eNirkIAkklNlg~dSmvFiDD 335 (574)
T COG3882 310 DPKAENIRKIAKKLNLGLDSMVFIDD 335 (574)
T ss_pred CcchhhHHHHHHHhCCCccceEEecC
Confidence 47999999999999999 78999874
No 165
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=39.27 E-value=58 Score=22.86 Aligned_cols=49 Identities=8% Similarity=0.126 Sum_probs=34.5
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCC--CceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCS--QVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~--~~s~LiI~g 54 (63)
|+.++..+|.. +-+++|+|+.. ++..-.+.+.+.+.++.- +..+++|.+
T Consensus 145 qRvaIA~vLa~---~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tH 197 (235)
T COG1122 145 QRVAIAGVLAM---GPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTH 197 (235)
T ss_pred eeHHhhHHHHc---CCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeC
Confidence 56677777765 57999999984 666677888888888653 333555543
No 166
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=39.21 E-value=71 Score=22.18 Aligned_cols=50 Identities=12% Similarity=0.219 Sum_probs=32.7
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEecc
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLGI 55 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g~ 55 (63)
++++|..||- ..-+++|+|+.. ++..-.+.+.+.+.++..+..++++...
T Consensus 170 qrl~LAral~---~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~ 221 (276)
T PRK14271 170 QLLCLARTLA---VNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHN 221 (276)
T ss_pred HHHHHHHHHh---cCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 5667777775 466899999994 5544456677777776433346666543
No 167
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=38.96 E-value=74 Score=21.79 Aligned_cols=50 Identities=10% Similarity=0.115 Sum_probs=33.8
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC--CCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC--SQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~--~~~s~LiI~g 54 (63)
-++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++. -+..++++..
T Consensus 134 ~qrl~laral~~---~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH 187 (255)
T PRK11248 134 RQRVGIARALAA---NPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITH 187 (255)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 366777778754 67999999984 66666677777777651 2434566644
No 168
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=38.93 E-value=60 Score=22.67 Aligned_cols=51 Identities=8% Similarity=0.106 Sum_probs=35.3
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC--CCceeEEEecc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC--SQVSLSARLGI 55 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~--~~~s~LiI~g~ 55 (63)
-++++|..||.. +-+++|+|+.. ++..-...+.+.+.++. .+..+++|...
T Consensus 150 ~qrv~iAraL~~---~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd 204 (287)
T PRK13637 150 KRRVAIAGVVAM---EPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHS 204 (287)
T ss_pred HHHHHHHHHHHc---CCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 467788888854 67999999994 66666677777777652 24446766544
No 169
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=38.93 E-value=73 Score=21.07 Aligned_cols=50 Identities=12% Similarity=0.077 Sum_probs=34.9
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC-CCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC-SQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~~~s~LiI~g 54 (63)
-++++|..||-. +-+++++|+.. ++..-.+.+.+.+.++. -+..++++..
T Consensus 150 ~qrl~la~al~~---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH 202 (243)
T TIGR01978 150 KKRNEILQMALL---EPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITH 202 (243)
T ss_pred HHHHHHHHHHhc---CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEe
Confidence 356777777754 67999999994 66666778888887753 2334666654
No 170
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=38.84 E-value=76 Score=24.90 Aligned_cols=49 Identities=10% Similarity=0.152 Sum_probs=34.2
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g 54 (63)
++++|.-|| +++-+++|+|+.. ++..-.+.+.+.+.++..+..+++|.+
T Consensus 600 qri~lARal---l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH 650 (694)
T TIGR01846 600 QRIAIARAL---VGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAH 650 (694)
T ss_pred HHHHHHHHH---HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 566777777 4677999999994 666566777778887655554555544
No 171
>PF13514 AAA_27: AAA domain
Probab=38.57 E-value=45 Score=28.02 Aligned_cols=53 Identities=17% Similarity=0.139 Sum_probs=39.6
Q ss_pred hhhHHHHhhhh--cCCcE-EEEecC--CCCCCChHHHHHHHHhcCCCceeEEEecccC
Q psy5946 5 LGLTSTLSIKL--MQDDL-HIVKDL--VLPVDDPKYLENLVEERCSQVSLSARLGIRD 57 (63)
Q Consensus 5 lGLk~ALS~K~--~q~~L-iIvD~l--~l~~~KTk~L~~~l~~~~~~~s~LiI~g~~~ 57 (63)
|+||.|+..-+ ....| +|+||. ..+...++.+.+.|.+++=..-|++...+..
T Consensus 1036 LALRLA~~e~~~~~~~~lP~IlDD~fvnfDd~R~~~~l~~L~~ls~~~QVI~FTch~~ 1093 (1111)
T PF13514_consen 1036 LALRLALAELLAEQGEPLPFILDDIFVNFDDERARAALELLAELSRRRQVIYFTCHEH 1093 (1111)
T ss_pred HHHHHHHHHHHHhCCCCCcEEeeCCccccCHHHHHHHHHHHHHhccCCeEEEEeccHH
Confidence 67888888877 23344 889998 5677788889999998775556888877654
No 172
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=38.50 E-value=75 Score=20.94 Aligned_cols=49 Identities=2% Similarity=0.026 Sum_probs=32.7
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC-CCceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC-SQVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~~~s~LiI~g 54 (63)
++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++. .+..++++..
T Consensus 140 qrl~la~al~~---~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH 191 (232)
T cd03218 140 RRVEIARALAT---NPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDH 191 (232)
T ss_pred HHHHHHHHHhc---CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 56677777765 66999999994 66666677777777652 3444555543
No 173
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=38.46 E-value=87 Score=21.53 Aligned_cols=51 Identities=10% Similarity=0.076 Sum_probs=35.0
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC-CCceeEEEecc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC-SQVSLSARLGI 55 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~~~s~LiI~g~ 55 (63)
-++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++. -+..++++...
T Consensus 148 ~qrv~laraL~~---~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~ 201 (272)
T PRK15056 148 KKRVFLARAIAQ---QGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHN 201 (272)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 367788888865 56999999994 66556677778887652 24446666543
No 174
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=38.44 E-value=73 Score=21.14 Aligned_cols=51 Identities=10% Similarity=0.080 Sum_probs=34.0
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC--CCceeEEEecc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC--SQVSLSARLGI 55 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~--~~~s~LiI~g~ 55 (63)
-++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++. .+..+++|...
T Consensus 142 ~qrv~ia~al~~---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~ 196 (235)
T cd03261 142 KKRVALARALAL---DPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHD 196 (235)
T ss_pred HHHHHHHHHHhc---CCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecC
Confidence 356777777765 67999999984 55555666777777652 24346666543
No 175
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=38.39 E-value=69 Score=22.19 Aligned_cols=32 Identities=16% Similarity=0.174 Sum_probs=22.6
Q ss_pred hhhhcCCcEEEEecCC--CCCCChHHHHHHHHhc
Q psy5946 12 SIKLMQDDLHIVKDLV--LPVDDPKYLENLVEER 43 (63)
Q Consensus 12 S~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~ 43 (63)
++......++++|+.. ++...-+.+.+.+.++
T Consensus 205 ~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~ 238 (270)
T cd03242 205 KEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR 238 (270)
T ss_pred HHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC
Confidence 3455678999999995 5555556677777654
No 176
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=38.25 E-value=82 Score=21.52 Aligned_cols=51 Identities=10% Similarity=0.025 Sum_probs=33.3
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC--CCceeEEEecc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC--SQVSLSARLGI 55 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~--~~~s~LiI~g~ 55 (63)
.++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++. .+..++++...
T Consensus 153 ~qrv~laral~~---~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~ 207 (265)
T PRK10575 153 RQRAWIAMLVAQ---DSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHD 207 (265)
T ss_pred HHHHHHHHHHhc---CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 367777778775 66999999984 55545556667776642 24446666443
No 177
>PRK13577 diaminopimelate epimerase; Provisional
Probab=38.17 E-value=56 Score=22.96 Aligned_cols=37 Identities=8% Similarity=-0.071 Sum_probs=22.8
Q ss_pred cCCcEEEEecCCCCCCChHHHHHHHH--hcCCCceeEEE
Q psy5946 16 MQDDLHIVKDLVLPVDDPKYLENLVE--ERCSQVSLSAR 52 (63)
Q Consensus 16 ~q~~LiIvD~l~l~~~KTk~L~~~l~--~~~~~~s~LiI 52 (63)
..|+++|||+.+-+..-+..++..+. ++|.|-..+++
T Consensus 9 ~GNdfvVvd~~~~~~~~~~~~~~~i~~R~~gig~Dg~i~ 47 (281)
T PRK13577 9 LGNDYLVIDPRDAPFDPSADAIRRICHRHFGVGSDGILF 47 (281)
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHhhccccCcCCCEEEE
Confidence 57999999998743333344555555 45666435554
No 178
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=38.16 E-value=52 Score=23.19 Aligned_cols=30 Identities=23% Similarity=0.262 Sum_probs=24.3
Q ss_pred CChHHHHHHHHhcCCCceeEEEecccCCcCCC
Q psy5946 31 DDPKYLENLVEERCSQVSLSARLGIRDLQYDD 62 (63)
Q Consensus 31 ~KTk~L~~~l~~~~~~~s~LiI~g~~~~~~~~ 62 (63)
.-|+.+++.|.++|++.+-++| -+.|.|+|
T Consensus 151 ~~P~~IA~~L~~~G~~~~~~~V--lE~L~~~~ 180 (210)
T COG2241 151 FGPAEIAKLLTENGIGDSRVTV--LENLGYPD 180 (210)
T ss_pred CCHHHHHHHHHhCCCCCceEEE--EcccCCCc
Confidence 4599999999999998545665 48999986
No 179
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=38.09 E-value=70 Score=21.25 Aligned_cols=50 Identities=16% Similarity=0.171 Sum_probs=32.7
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC--CCceeEEEecc
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC--SQVSLSARLGI 55 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~--~~~s~LiI~g~ 55 (63)
++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++. .+..++++...
T Consensus 136 qrv~laral~~---~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~ 189 (232)
T PRK10771 136 QRVALARCLVR---EQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHS 189 (232)
T ss_pred HHHHHHHHHhc---CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 56666666655 66999999984 66655667777777652 34445665443
No 180
>COG1400 SEC65 Signal recognition particle 19 kDa protein [Intracellular trafficking and secretion]
Probab=38.03 E-value=35 Score=21.48 Aligned_cols=24 Identities=13% Similarity=0.097 Sum_probs=20.8
Q ss_pred ecCCCCCCChHHHHHHHHhcCCCc
Q psy5946 24 KDLVLPVDDPKYLENLVEERCSQV 47 (63)
Q Consensus 24 D~l~l~~~KTk~L~~~l~~~~~~~ 47 (63)
-++.++.|+.+.+++.++++|+..
T Consensus 25 k~laV~~P~~~ei~~a~~~LGl~~ 48 (93)
T COG1400 25 KELAVENPSLEEIAEALRELGLKP 48 (93)
T ss_pred hhhcccCCCHHHHHHHHHHcCCCe
Confidence 356789999999999999999974
No 181
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=38.00 E-value=70 Score=21.47 Aligned_cols=50 Identities=14% Similarity=0.155 Sum_probs=33.6
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEecc
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLGI 55 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g~ 55 (63)
|+++|..||.. +-+++++|+.. ++..-.+.+.+.+.++.-+..+++|...
T Consensus 155 qrv~laral~~---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~ 206 (252)
T PRK14255 155 QRVCIARVLAV---KPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHS 206 (252)
T ss_pred HHHHHHHHHhc---CCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECC
Confidence 56667777765 66899999994 5665667777888776333346666543
No 182
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=37.73 E-value=69 Score=22.15 Aligned_cols=50 Identities=8% Similarity=0.152 Sum_probs=34.5
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC--CCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC--SQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~--~~~s~LiI~g 54 (63)
-|+++|..||.. +-+++|+|+.. ++..-.+.+.+.+.++. .+..++++..
T Consensus 146 ~qrv~lAraL~~---~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH 199 (277)
T PRK13642 146 KQRVAVAGIIAL---RPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITH 199 (277)
T ss_pred HHHHHHHHHHHc---CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 367778888876 55899999984 66666777778877653 3444666643
No 183
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=37.64 E-value=76 Score=20.73 Aligned_cols=48 Identities=15% Similarity=0.071 Sum_probs=32.1
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEe
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARL 53 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~ 53 (63)
++++|..||. .+-+++++|+.. ++..-.+.+.+.+.++.-+..++++.
T Consensus 140 qrv~la~al~---~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~s 189 (220)
T cd03263 140 RKLSLAIALI---GGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTT 189 (220)
T ss_pred HHHHHHHHHh---cCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEc
Confidence 5677777775 477999999984 66556667777777643233455554
No 184
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=37.63 E-value=87 Score=21.67 Aligned_cols=51 Identities=8% Similarity=0.137 Sum_probs=34.1
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhc-CCCceeEEEecc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEER-CSQVSLSARLGI 55 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~-~~~~s~LiI~g~ 55 (63)
-++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++ ..+..++++...
T Consensus 144 ~qrv~laraL~~---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~ 197 (274)
T PRK13647 144 KKRVAIAGVLAM---DPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHD 197 (274)
T ss_pred HHHHHHHHHHHc---CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 367777777765 56999999994 5555566677777765 224446666543
No 185
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=37.56 E-value=69 Score=22.02 Aligned_cols=50 Identities=10% Similarity=0.104 Sum_probs=33.4
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC--CCceeEEEecc
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC--SQVSLSARLGI 55 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~--~~~s~LiI~g~ 55 (63)
++++|..||.. +-+++++|+.. ++..-...+.+.+.++. -+.++++|.+.
T Consensus 122 qrv~iaraL~~---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd 175 (246)
T cd03237 122 QRVAIAACLSK---DADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHD 175 (246)
T ss_pred HHHHHHHHHhc---CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 56777777775 66999999984 55555566677777652 23456666543
No 186
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=37.42 E-value=63 Score=21.65 Aligned_cols=52 Identities=12% Similarity=0.123 Sum_probs=35.0
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCC--CceeEEEeccc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCS--QVSLSARLGIR 56 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~--~~s~LiI~g~~ 56 (63)
.|+++|..||.. +-+++++|+.. ++..-.+.+.+.+.++.. +..++++.+..
T Consensus 136 ~qrl~laral~~---~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~ 191 (237)
T TIGR00968 136 RQRVALARALAV---EPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQ 191 (237)
T ss_pred HHHHHHHHHHhc---CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 467777777766 55999999994 555556667777776532 44567665443
No 187
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=37.21 E-value=81 Score=26.17 Aligned_cols=44 Identities=14% Similarity=0.006 Sum_probs=32.3
Q ss_pred HHhhhhcCCcEEEEecCC-------CCCCChHHHHHHHHhcCCCceeE-EEecc
Q psy5946 10 TLSIKLMQDDLHIVKDLV-------LPVDDPKYLENLVEERCSQVSLS-ARLGI 55 (63)
Q Consensus 10 ALS~K~~q~~LiIvD~l~-------l~~~KTk~L~~~l~~~~~~~s~L-iI~g~ 55 (63)
.|--+++=++||++=|-+ ++..-|.+.+..++..||. ++ .+||+
T Consensus 170 slAG~l~L~kLIvlyD~N~IsiDG~~~~~f~ed~~~RfeAyGW~--vi~~~DG~ 221 (663)
T COG0021 170 SLAGHLKLGKLIVLYDSNDISIDGDTSLSFTEDVAKRFEAYGWN--VIRVIDGH 221 (663)
T ss_pred HHHhhcCCCcEEEEEeCCCceeccCcccccchhHHHHHHhcCCe--EEEecCCC
Confidence 355677888998875542 2334578888999999997 66 88888
No 188
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=37.14 E-value=82 Score=20.97 Aligned_cols=50 Identities=6% Similarity=0.126 Sum_probs=32.8
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC-CCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC-SQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~~~s~LiI~g 54 (63)
.|+++|..||- .+-+++++|+.. ++..-.+.+.+.+.++. .+..++++..
T Consensus 142 ~qrv~la~al~---~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH 194 (240)
T PRK09493 142 QQRVAIARALA---VKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTH 194 (240)
T ss_pred HHHHHHHHHHh---cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 36677777775 467999999994 55555667777776642 3444565543
No 189
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=37.12 E-value=75 Score=21.25 Aligned_cols=51 Identities=10% Similarity=0.022 Sum_probs=33.9
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC--CCceeEEEecc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC--SQVSLSARLGI 55 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~--~~~s~LiI~g~ 55 (63)
-++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++. .+..++++...
T Consensus 141 ~qrv~laral~~---~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~ 195 (242)
T cd03295 141 QQRVGVARALAA---DPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHD 195 (242)
T ss_pred HHHHHHHHHHhc---CCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 356777777764 66899999984 55555667777777753 24446666443
No 190
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=37.07 E-value=67 Score=21.57 Aligned_cols=51 Identities=10% Similarity=0.141 Sum_probs=34.9
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC-C-CceeEEEecc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC-S-QVSLSARLGI 55 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~-~~s~LiI~g~ 55 (63)
.++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++. - +..++++...
T Consensus 159 ~qrl~la~al~~---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~ 213 (236)
T cd03267 159 RMRAEIAAALLH---EPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHY 213 (236)
T ss_pred HHHHHHHHHHhc---CCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 356777777765 56899999994 66667778888888752 2 3346666443
No 191
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=36.97 E-value=36 Score=25.12 Aligned_cols=51 Identities=6% Similarity=-0.017 Sum_probs=39.6
Q ss_pred ChhhhhhHHHHhhhhcCCcEEEEecCCCCCCChHHHHHHHHhcCCCceeEEEe
Q psy5946 1 MSIVLGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCSQVSLSARL 53 (63)
Q Consensus 1 ~vR~lGLk~ALS~K~~q~~LiIvD~l~l~~~KTk~L~~~l~~~~~~~s~LiI~ 53 (63)
++|+.|.--+.=.++++..+-|+|-=+---.|.+.....+.+.|.. ++|+.
T Consensus 70 iirAHGv~~~~~~~~~~~g~~viDaTCP~V~k~~~~v~~~~~~Gy~--vvi~G 120 (298)
T PRK01045 70 IFSAHGVSPAVREEAKERGLTVIDATCPLVTKVHKEVARMSREGYE--IILIG 120 (298)
T ss_pred EEeCCCCCHHHHHHHHHCCCeEEeCCCccchHHHHHHHHHHhCCCE--EEEEe
Confidence 3678888888888999999999998776677888888887776653 55543
No 192
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=36.81 E-value=70 Score=19.85 Aligned_cols=34 Identities=24% Similarity=0.179 Sum_probs=20.5
Q ss_pred hHHHHhhhhcCCcEEEEecCCCCCCChHHHHHHHH
Q psy5946 7 LTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVE 41 (63)
Q Consensus 7 Lk~ALS~K~~q~~LiIvD~l~l~~~KTk~L~~~l~ 41 (63)
|.+.+........++||||-. ++..|..+.+.+.
T Consensus 19 l~Sl~~q~~~~~eiiivdd~s-s~d~t~~~~~~~~ 52 (201)
T cd04195 19 LESILKQTLPPDEVVLVKDGP-VTQSLNEVLEEFK 52 (201)
T ss_pred HHHHHhcCCCCcEEEEEECCC-CchhHHHHHHHHH
Confidence 444454444456788888843 4556777665554
No 193
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=36.76 E-value=71 Score=25.95 Aligned_cols=20 Identities=20% Similarity=0.006 Sum_probs=16.4
Q ss_pred HHHHHHHhcCCCceeE-EEeccc
Q psy5946 35 YLENLVEERCSQVSLS-ARLGIR 56 (63)
Q Consensus 35 ~L~~~l~~~~~~~s~L-iI~g~~ 56 (63)
.+.+.++++||. ++ -|||++
T Consensus 274 ~~~~~fe~fG~~--~~g~vDGHd 294 (641)
T PLN02234 274 TSSTLFEELGFH--YVGPVDGHN 294 (641)
T ss_pred CHHHHHHHcCCE--EEeeECCCC
Confidence 457899999997 66 789986
No 194
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=36.73 E-value=66 Score=21.03 Aligned_cols=51 Identities=14% Similarity=0.128 Sum_probs=34.4
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC-CCceeEEEecc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC-SQVSLSARLGI 55 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~~~s~LiI~g~ 55 (63)
.|+++|..||.. +-+++++|+.. ++..-.+.+.+.+.++. .+..++++...
T Consensus 110 ~qrv~laral~~---~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~ 163 (200)
T cd03217 110 KKRNEILQLLLL---EPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHY 163 (200)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 467777777764 67999999984 55555667777777652 34446666543
No 195
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=36.59 E-value=73 Score=22.36 Aligned_cols=50 Identities=12% Similarity=0.112 Sum_probs=34.2
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC-CCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC-SQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~~~s~LiI~g 54 (63)
-|+++|..||.. +-+++++|+.. ++..-.+.+.+.+.++. -+..++++.+
T Consensus 130 ~qrv~la~al~~---~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH 182 (302)
T TIGR01188 130 RRRLDIAASLIH---QPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTH 182 (302)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 467888888865 67999999984 55555567777777652 2444666544
No 196
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=36.51 E-value=86 Score=20.70 Aligned_cols=50 Identities=14% Similarity=0.197 Sum_probs=32.9
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC--CCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC--SQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~--~~~s~LiI~g 54 (63)
.++++|..||-. +-+++++|+.. ++..-.+.+.+.+.++. .+..++++..
T Consensus 150 ~qrv~la~al~~---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH 203 (241)
T cd03256 150 QQRVAIARALMQ---QPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLH 203 (241)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 356777777764 77999999984 55555566677777642 2444666654
No 197
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=36.47 E-value=83 Score=22.42 Aligned_cols=51 Identities=10% Similarity=0.084 Sum_probs=34.3
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC-CCceeEEEeccc
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC-SQVSLSARLGIR 56 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~~~s~LiI~g~~ 56 (63)
|+++|..||.. +-+++++|+.. ++..-.+.+.+.+.++. -+..+++|.+..
T Consensus 172 qrvalA~aL~~---~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~ 225 (305)
T PRK13651 172 RRVALAGILAM---EPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDL 225 (305)
T ss_pred HHHHHHHHHHh---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCH
Confidence 56777777765 66999999994 55555567777777642 244577776543
No 198
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=36.45 E-value=94 Score=20.15 Aligned_cols=48 Identities=23% Similarity=0.207 Sum_probs=31.8
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC-CCceeEEEe
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC-SQVSLSARL 53 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~~~s~LiI~ 53 (63)
++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++. .+..++++.
T Consensus 133 qrv~la~al~~---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~t 183 (208)
T cd03268 133 QRLGIALALLG---NPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISS 183 (208)
T ss_pred HHHHHHHHHhc---CCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 56677777765 56899999994 65555667777777642 344455554
No 199
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=36.37 E-value=85 Score=20.47 Aligned_cols=49 Identities=12% Similarity=0.093 Sum_probs=32.3
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC-CCceeEEEe
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC-SQVSLSARL 53 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~~~s~LiI~ 53 (63)
.++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++. -+..++++.
T Consensus 135 ~qrl~la~al~~---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~s 186 (204)
T PRK13538 135 QRRVALARLWLT---RAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTT 186 (204)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 356777777765 67999999984 55555667777777642 233455553
No 200
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=36.34 E-value=56 Score=22.73 Aligned_cols=50 Identities=12% Similarity=0.163 Sum_probs=34.5
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC--CCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC--SQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~--~~~s~LiI~g 54 (63)
-++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++. .+..++++..
T Consensus 146 ~qrv~laral~~---~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH 199 (279)
T PRK13635 146 KQRVAIAGVLAL---QPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITH 199 (279)
T ss_pred HHHHHHHHHHHc---CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEec
Confidence 367788888875 66999999994 66666677777777653 2434666643
No 201
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=36.29 E-value=97 Score=20.66 Aligned_cols=49 Identities=6% Similarity=0.040 Sum_probs=32.2
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhc-CCCceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEER-CSQVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~-~~~~s~LiI~g 54 (63)
|+++|..||-. +-+++|+|+.. ++..-.+.+.+.+.+. ..+..++++..
T Consensus 149 qrv~laral~~---~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH 200 (224)
T cd03220 149 ARLAFAIATAL---EPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSH 200 (224)
T ss_pred HHHHHHHHHhc---CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 56677777765 56999999994 5555556677777764 23444666544
No 202
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=36.21 E-value=73 Score=22.11 Aligned_cols=51 Identities=10% Similarity=0.083 Sum_probs=34.5
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC--CCceeEEEecc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC--SQVSLSARLGI 55 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~--~~~s~LiI~g~ 55 (63)
.++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++. .+..++++...
T Consensus 156 ~qrv~laral~~---~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~ 210 (289)
T PRK13645 156 KRRVALAGIIAM---DGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHN 210 (289)
T ss_pred HHHHHHHHHHHh---CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 467788888875 66899999994 66655666777776642 34456666543
No 203
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=35.91 E-value=58 Score=21.68 Aligned_cols=49 Identities=12% Similarity=0.065 Sum_probs=32.3
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCC--CceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCS--QVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~--~~s~LiI~g 54 (63)
++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++.. +..++++..
T Consensus 132 qrv~laral~~---~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH 184 (230)
T TIGR02770 132 QRVMIALALLL---EPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITH 184 (230)
T ss_pred HHHHHHHHHhc---CCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 56777777754 56899999984 555556667777776532 334566543
No 204
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=35.75 E-value=85 Score=24.50 Aligned_cols=58 Identities=12% Similarity=0.142 Sum_probs=42.4
Q ss_pred hhhhhhHHHHhh---hhcCCcEEEEecCCCCCCChHHHHHHHHhcCCCceeEEEecccCCcC
Q psy5946 2 SIVLGLTSTLSI---KLMQDDLHIVKDLVLPVDDPKYLENLVEERCSQVSLSARLGIRDLQY 60 (63)
Q Consensus 2 vR~lGLk~ALS~---K~~q~~LiIvD~l~l~~~KTk~L~~~l~~~~~~~s~LiI~g~~~~~~ 60 (63)
.|..+++.+++. ..+..++++|||.-.--.--+...+.|.+.|..+ +-+.-++-.+-|
T Consensus 330 ~R~~nv~~~f~~~~~~v~gk~VlLVDDsittGtTl~~~~~~L~~aGA~e-V~v~~~sPpi~~ 390 (475)
T PRK07631 330 LREQGVKMKLSPVRGVVEGKRVVMVDDSIVRGTTSRRIVTMLREAGATE-VHVRISSPPITH 390 (475)
T ss_pred HHHHHHhhhhhhcccccCCceEEEEeeeeccHHHHHHHHHHHHHcCCCE-EEEEEeCCCccC
Confidence 377888888865 3455679999999777777788889999988884 666655544433
No 205
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=35.71 E-value=73 Score=23.37 Aligned_cols=42 Identities=17% Similarity=-0.024 Sum_probs=28.7
Q ss_pred hhhcCCcEEEEecCC---CCC-----CChHHHHHHHHhcCCCceeEEEeccc
Q psy5946 13 IKLMQDDLHIVKDLV---LPV-----DDPKYLENLVEERCSQVSLSARLGIR 56 (63)
Q Consensus 13 ~K~~q~~LiIvD~l~---l~~-----~KTk~L~~~l~~~~~~~s~LiI~g~~ 56 (63)
++++-++|+.+=|.+ ++- -.+..|.+.++.+||. |.=|||++
T Consensus 166 ah~~L~NLiaivD~N~~QldG~t~~i~~~~pL~~k~eAFGw~--V~evdG~d 215 (243)
T COG3959 166 AHYKLDNLIAIVDRNKLQLDGETEEIMPKEPLADKWEAFGWE--VIEVDGHD 215 (243)
T ss_pred HHhccCcEEEEEecCCcccCCchhhccCcchhHHHHHhcCce--EEEEcCcC
Confidence 455667777665542 222 2455788999999996 88899874
No 206
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=35.53 E-value=72 Score=21.81 Aligned_cols=50 Identities=10% Similarity=0.072 Sum_probs=32.6
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC--CCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC--SQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~--~~~s~LiI~g 54 (63)
.++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++. .+..++++..
T Consensus 156 ~qrv~laral~~---~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH 209 (265)
T TIGR02769 156 LQRINIARALAV---KPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITH 209 (265)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Confidence 356777777754 67999999984 55544556777777652 2444666643
No 207
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=35.45 E-value=90 Score=21.29 Aligned_cols=53 Identities=9% Similarity=0.063 Sum_probs=33.4
Q ss_pred hhhhhhHHHHhhhh---cCCcEEEEecCC--CCCCChHHHHHHHHhcC--CCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKL---MQDDLHIVKDLV--LPVDDPKYLENLVEERC--SQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~---~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~--~~~s~LiI~g 54 (63)
-++++|..||.... .+-+++++|+.. ++..-.+.+.+.+.++. -+..++++..
T Consensus 140 ~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH 199 (258)
T PRK13548 140 QQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLH 199 (258)
T ss_pred HHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 36677777777432 356999999984 55555566667776542 2334666643
No 208
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step.; PDB: 3OHG_A.
Probab=35.40 E-value=67 Score=20.44 Aligned_cols=42 Identities=10% Similarity=-0.095 Sum_probs=22.3
Q ss_pred cCCcEEEEe--cCCCCCCChHHHHHHHHhcCCCceeEEEecccCC
Q psy5946 16 MQDDLHIVK--DLVLPVDDPKYLENLVEERCSQVSLSARLGIRDL 58 (63)
Q Consensus 16 ~q~~LiIvD--~l~l~~~KTk~L~~~l~~~~~~~s~LiI~g~~~~ 58 (63)
++++++++- --.-......+|+++++++|+. .++..||.-..
T Consensus 99 ~~g~l~l~~vdg~~~~g~tl~ela~~l~~lG~~-~AinLDGGgSs 142 (170)
T PF09992_consen 99 ADGKLLLIVVDGRQSAGMTLDELAQLLKSLGCV-DAINLDGGGSS 142 (170)
T ss_dssp TTSEEEEEEE----S--B-HHHHHHHHHHHT-S-EEEE---GGG-
T ss_pred CCCcEEEEEEcCCcCCCCCHHHHHHHHHHcCcC-eEEEecCCcce
Confidence 455655544 2111345788999999999988 59888887543
No 209
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=35.10 E-value=52 Score=21.55 Aligned_cols=50 Identities=12% Similarity=0.008 Sum_probs=32.9
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC--CCceeEEEecc
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC--SQVSLSARLGI 55 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~--~~~s~LiI~g~ 55 (63)
++++|..||- .+-+++++|+.. ++..-.+.+.+.+.++. .+..++++...
T Consensus 138 qrv~la~al~---~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~ 191 (214)
T cd03297 138 QRVALARALA---AQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHD 191 (214)
T ss_pred HHHHHHHHHh---cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecC
Confidence 5667777775 467999999984 55555677777777652 24346666543
No 210
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=34.99 E-value=1.3e+02 Score=19.48 Aligned_cols=49 Identities=16% Similarity=0.258 Sum_probs=31.1
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhc-CCCceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEER-CSQVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~-~~~~s~LiI~g 54 (63)
++++|..||-. +-+++++|+.. ++..-.+.+.+.+... ..+..++++.+
T Consensus 130 ~rl~la~al~~---~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh 181 (195)
T PRK13541 130 KIVAIARLIAC---QSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSH 181 (195)
T ss_pred HHHHHHHHHhc---CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 56777777765 56999999984 5444456666666532 33444566543
No 211
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=34.94 E-value=1e+02 Score=20.02 Aligned_cols=50 Identities=10% Similarity=0.140 Sum_probs=31.9
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC-CCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC-SQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~~~s~LiI~g 54 (63)
.|++.|..||.. +-+++++|+.. ++..-.+.+.+.+.++. -+..++++..
T Consensus 134 ~qrl~la~al~~---~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH 186 (210)
T cd03269 134 QQKVQFIAAVIH---DPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTH 186 (210)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 356677777765 66999999984 55555566667776542 2334555543
No 212
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=34.55 E-value=1.1e+02 Score=20.08 Aligned_cols=49 Identities=14% Similarity=0.150 Sum_probs=32.5
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g 54 (63)
++++|..||-. +-+++++|+.. ++..-.+.+.+.+.++.-...++++..
T Consensus 148 qrv~la~al~~---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH 198 (227)
T cd03260 148 QRLCLARALAN---EPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTH 198 (227)
T ss_pred HHHHHHHHHhc---CCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEec
Confidence 56677777765 56999999994 566566677777776522234555543
No 213
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=34.53 E-value=1e+02 Score=20.62 Aligned_cols=50 Identities=16% Similarity=0.176 Sum_probs=33.6
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC--CCceeEEEecc
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC--SQVSLSARLGI 55 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~--~~~s~LiI~g~ 55 (63)
++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++. .+..++++...
T Consensus 160 qrv~la~al~~---~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~ 213 (255)
T PRK11300 160 RRLEIARCMVT---QPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHD 213 (255)
T ss_pred HHHHHHHHHhc---CCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCC
Confidence 56777777765 66999999994 66666677777777641 24346666543
No 214
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=34.53 E-value=1e+02 Score=20.56 Aligned_cols=50 Identities=12% Similarity=0.094 Sum_probs=34.3
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC--CCceeEEEecc
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC--SQVSLSARLGI 55 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~--~~~s~LiI~g~ 55 (63)
++++|..||.. +-+++|+|+.. ++..-.+.+.+.+.++. .+..+++|...
T Consensus 121 qrv~la~al~~---~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 174 (230)
T TIGR01184 121 QRVAIARALSI---RPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHD 174 (230)
T ss_pred HHHHHHHHHHc---CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 56777777765 66999999984 66666777777777652 24446666543
No 215
>PF01678 DAP_epimerase: Diaminopimelate epimerase; InterPro: IPR001653 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Two lysine biosynthesis pathways evolved separately in organisms, the diaminopimelic acid (DAP) and aminoadipic acid (AAA) pathways. The DAP pathway synthesizes L-lysine from aspartate and pyruvate, and diaminopimelic acid is an intermediate. This pathway is utilised by most bacteria, some archaea, some fungi, some algae, and plants. The AAA pathway synthesizes L-lysine from alpha-ketoglutarate and acetyl coenzyme A (acetyl-CoA), and alpha-aminoadipic acid is an intermediate. This pathway is utilised by most fungi, some algae, the bacterium Thermus thermophilus, and probably some archaea, such as Sulfolobus, Thermoproteus, and Pyrococcus. No organism is known to possess both pathways []. There four known variations of the DAP pathway in bacteria: the succinylase, acetylase, aminotransferase, and dehydrogenase pathways. These pathways share the steps converting L-aspartate to L-2,3,4,5- tetrahydrodipicolinate (THDPA), but the subsequent steps leading to the production of meso-diaminopimelate, the immediate precursor of L-lysine, are different []. The succinylase pathway acylates THDPA with succinyl-CoA to generate N-succinyl-LL-2-amino-6-ketopimelate and forms meso-DAP by subsequent transamination, desuccinylation, and epimerization. This pathway is utilised by proteobacteria and many firmicutes and actinobacteria. The acetylase pathway is analogous to the succinylase pathway but uses N-acetyl intermediates. This pathway is limited to certain Bacillus species, in which the corresponding genes have not been identified. The aminotransferase pathway converts THDPA directly to LL-DAP by diaminopimelate aminotransferase (DapL) without acylation. This pathway is shared by cyanobacteria, Chlamydia, the archaeon Methanothermobacter thermautotrophicus, and the plant Arabidopsis thaliana. The dehydrogenase pathway forms meso-DAP directly from THDPA, NADPH, and NH4 _ by using diaminopimelate dehydrogenase (Ddh). This pathway is utilised by some Bacillus and Brevibacterium species and Corynebacterium glutamicum. Most bacteria use only one of the four variants, although certain bacteria, such as C. glutamicum and Bacillus macerans, possess both the succinylase and dehydrogenase pathways. This entry represents diaminopimelate epimerase (5.1.1.7 from EC), which catalyses the isomerisation of L,L-dimaminopimelate to meso-DAP in the biosynthetic pathway leading from aspartate to lysine. It is a member of the broader family of PLP-independent amino acid racemases. This enzyme is a monomeric protein of about 30 kDa consisting of two domains which are homologus in structure though they share little sequence similarity []. Each domain consists of mixed beta-sheets which fold into a barrel around the central helix. The active site cleft is formed from both domains and contains two conserved cysteines thought to function as the acid and base in the catalytic reaction []. Other PLP-independent racemases such as glutamate racemase have been shown to share a similar structure and mechanism of catalysis.; GO: 0008837 diaminopimelate epimerase activity, 0009089 lysine biosynthetic process via diaminopimelate; PDB: 2OTN_A 3FVE_A 2Q9J_A 2GKJ_A 1GQZ_A 2Q9H_A 1BWZ_A 2GKE_A 3EKM_C 3EJX_D ....
Probab=34.31 E-value=1.1e+02 Score=18.53 Aligned_cols=38 Identities=16% Similarity=-0.062 Sum_probs=27.3
Q ss_pred CcEEEEecCCCCCCChHHHHHHHHhcCCC---ceeEEEecc
Q psy5946 18 DDLHIVKDLVLPVDDPKYLENLVEERCSQ---VSLSARLGI 55 (63)
Q Consensus 18 ~~LiIvD~l~l~~~KTk~L~~~l~~~~~~---~s~LiI~g~ 55 (63)
++.++||+.+.....+..+...+..+..+ -+++||...
T Consensus 9 h~vi~vd~~~~~~~~~~~~~~~~~~~~~~~~~dnv~fv~~~ 49 (121)
T PF01678_consen 9 HDVIFVDDREEEDDLDSELARAICDRHFFPGGDNVNFVEIS 49 (121)
T ss_dssp EEEEEEETTTCSSTCCHHHHHHHHTTTTSTT-SEEEEEEEE
T ss_pred cEEEEEcCcccccccchhhhhhhhccccCCcccceEEEEEe
Confidence 56789999987766667777777765543 368888733
No 216
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=34.17 E-value=1e+02 Score=21.43 Aligned_cols=51 Identities=6% Similarity=0.067 Sum_probs=34.9
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC-CCceeEEEecc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC-SQVSLSARLGI 55 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~~~s~LiI~g~ 55 (63)
-|+++|..||.. +-+++|+|+.. ++..-.+.+.+.+.++. -+..++++...
T Consensus 151 ~qrl~laral~~---~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~ 204 (287)
T PRK13641 151 MRRVAIAGVMAY---EPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHN 204 (287)
T ss_pred HHHHHHHHHHHc---CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 367778777766 56999999984 65555677777777652 24346666544
No 217
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=34.14 E-value=1.1e+02 Score=19.41 Aligned_cols=50 Identities=16% Similarity=0.132 Sum_probs=34.4
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC-CCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC-SQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~~~s~LiI~g 54 (63)
.|+++|..||.. +-+++++|+.. ++..-.+.+.+.+.++. -+..++++..
T Consensus 101 ~qrv~laral~~---~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th 153 (173)
T cd03230 101 KQRLALAQALLH---DPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSH 153 (173)
T ss_pred HHHHHHHHHHHc---CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 367778888875 66999999994 66666677777887752 2434566543
No 218
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=34.10 E-value=97 Score=20.62 Aligned_cols=50 Identities=6% Similarity=0.038 Sum_probs=31.8
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhc-CCCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEER-CSQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~-~~~~s~LiI~g 54 (63)
-|+++|..||- .+-+++++|+.. ++..-.+.+.+.+..+ ..+..++++..
T Consensus 143 ~qrv~laral~---~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH 195 (241)
T PRK10895 143 RRRVEIARALA---ANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDH 195 (241)
T ss_pred HHHHHHHHHHh---cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEc
Confidence 35677777775 477999999994 5554455556666654 24544555543
No 219
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=34.01 E-value=92 Score=20.70 Aligned_cols=50 Identities=12% Similarity=0.088 Sum_probs=32.9
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEecc
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLGI 55 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g~ 55 (63)
++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++.-+..++++...
T Consensus 150 qrv~laral~~---~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~ 201 (242)
T TIGR03411 150 QWLEIGMLLMQ---DPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHD 201 (242)
T ss_pred HHHHHHHHHhc---CCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 56667777765 55899999984 5555566777777765334446666443
No 220
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=33.99 E-value=1.3e+02 Score=19.90 Aligned_cols=41 Identities=12% Similarity=0.179 Sum_probs=29.1
Q ss_pred hhhhhHHHHhhh-hcCCcEEEEecCC--CCCCChHHHHHHHHhc
Q psy5946 3 IVLGLTSTLSIK-LMQDDLHIVKDLV--LPVDDPKYLENLVEER 43 (63)
Q Consensus 3 R~lGLk~ALS~K-~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~ 43 (63)
+++++..||+.- +.+-+++++|+.. ++......+.+.+.+.
T Consensus 116 ~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~ 159 (198)
T cd03276 116 SFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKE 159 (198)
T ss_pred HHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHH
Confidence 566777777633 5788999999984 6655666677767664
No 221
>KOG4127|consensus
Probab=33.71 E-value=26 Score=27.40 Aligned_cols=31 Identities=13% Similarity=0.139 Sum_probs=21.9
Q ss_pred CCCCChHHHHHHHHhcCCCceeEEEecccCCcC
Q psy5946 28 LPVDDPKYLENLVEERCSQVSLSARLGIRDLQY 60 (63)
Q Consensus 28 l~~~KTk~L~~~l~~~~~~~s~LiI~g~~~~~~ 60 (63)
+.+|++..+....... +. .+-+|||++||||
T Consensus 47 ~~~p~~~~~~~~a~~v-l~-~~plvdGhndlp~ 77 (419)
T KOG4127|consen 47 LETPSTDFRLRRARRV-LR-HFPLVDGHNDLPW 77 (419)
T ss_pred ccCCchHHHHHHHhHh-hc-cccccCCCCchHH
Confidence 5667777776655532 32 4778999999987
No 222
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=33.68 E-value=98 Score=20.95 Aligned_cols=50 Identities=12% Similarity=0.031 Sum_probs=33.3
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhc--CCCceeEEEecc
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEER--CSQVSLSARLGI 55 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~--~~~~s~LiI~g~ 55 (63)
++++|..||. .+-+++|+|+.. ++..-...+.+.+.++ ..+..++++...
T Consensus 147 qrv~laral~---~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~ 200 (254)
T PRK10418 147 QRMMIALALL---CEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHD 200 (254)
T ss_pred HHHHHHHHHh---cCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecC
Confidence 5677777775 466999999995 5554556666777664 234457777544
No 223
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=33.67 E-value=1.3e+02 Score=19.99 Aligned_cols=49 Identities=12% Similarity=0.042 Sum_probs=31.8
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhc-CCCceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEER-CSQVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~-~~~~s~LiI~g 54 (63)
++++|..||-. +-+++++|+.. ++..-.+.+.+.+.++ ..+..++++..
T Consensus 144 qrl~la~al~~---~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH 195 (237)
T PRK11614 144 QMLAIGRALMS---QPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQ 195 (237)
T ss_pred HHHHHHHHHHh---CCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 55666666654 67999999984 5555556677777664 34544556543
No 224
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=33.43 E-value=95 Score=20.10 Aligned_cols=49 Identities=4% Similarity=0.108 Sum_probs=31.7
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC-CCceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC-SQVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~~~s~LiI~g 54 (63)
++++|..||-. +-+++++|+.. ++..-.+.+.+.+.++. .+..++++..
T Consensus 142 qrv~la~al~~---~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh 193 (213)
T cd03262 142 QRVAIARALAM---NPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTH 193 (213)
T ss_pred HHHHHHHHHhc---CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 56677777765 66899999984 55545566777777642 3444555543
No 225
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=33.37 E-value=1.1e+02 Score=19.71 Aligned_cols=36 Identities=6% Similarity=0.069 Sum_probs=27.2
Q ss_pred cEEEEecCCCCCCChHHHHHHHHhcCCC-ceeEEEec
Q psy5946 19 DLHIVKDLVLPVDDPKYLENLVEERCSQ-VSLSARLG 54 (63)
Q Consensus 19 ~LiIvD~l~l~~~KTk~L~~~l~~~~~~-~s~LiI~g 54 (63)
.++.-++.....|++..+...++.+|.. ..+++|+.
T Consensus 130 ~v~~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l~vgD 166 (199)
T PRK09456 130 HIYLSQDLGMRKPEARIYQHVLQAEGFSAADAVFFDD 166 (199)
T ss_pred EEEEecccCCCCCCHHHHHHHHHHcCCChhHeEEeCC
Confidence 4555666667788999999999999886 35788754
No 226
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=33.33 E-value=89 Score=18.62 Aligned_cols=40 Identities=25% Similarity=0.111 Sum_probs=24.2
Q ss_pred hcCCcEEEEecCC-CCC-CChHHHHHHHHhcCCCceeEEEec
Q psy5946 15 LMQDDLHIVKDLV-LPV-DDPKYLENLVEERCSQVSLSARLG 54 (63)
Q Consensus 15 ~~q~~LiIvD~l~-l~~-~KTk~L~~~l~~~~~~~s~LiI~g 54 (63)
...-+++|+|++. ++. .....+...+..+..+...+++.|
T Consensus 127 ~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~sa 168 (201)
T smart00487 127 LSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSA 168 (201)
T ss_pred HhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCccceEEEEec
Confidence 3445699999995 444 455666666665533434666655
No 227
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=33.33 E-value=69 Score=23.14 Aligned_cols=51 Identities=14% Similarity=0.032 Sum_probs=34.4
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC--CCceeEEEecc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC--SQVSLSARLGI 55 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~--~~~s~LiI~g~ 55 (63)
-++.++..||.. +-+|+|.|+.. ++..-.+.+.+.+.++. .+.++|||...
T Consensus 167 ~QRv~IArAL~~---~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHd 221 (330)
T PRK09473 167 RQRVMIAMALLC---RPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHD 221 (330)
T ss_pred HHHHHHHHHHHc---CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence 356777777764 66999999984 55555666677776652 34457877543
No 228
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=33.11 E-value=75 Score=21.25 Aligned_cols=51 Identities=10% Similarity=0.113 Sum_probs=33.6
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCC--CceeEEEecc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCS--QVSLSARLGI 55 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~--~~s~LiI~g~ 55 (63)
-|+++|..||.. +-+++++|+.. ++..-.+.+.+.+.++.. +..++++...
T Consensus 135 ~qrl~laral~~---~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~ 189 (235)
T cd03299 135 QQRVAIARALVV---NPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHD 189 (235)
T ss_pred HHHHHHHHHHHc---CCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 367778777776 55899999994 555556666677766432 4446666543
No 229
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=33.08 E-value=87 Score=22.69 Aligned_cols=51 Identities=22% Similarity=0.186 Sum_probs=34.5
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC--CCceeEEEecc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC--SQVSLSARLGI 55 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~--~~~s~LiI~g~ 55 (63)
-++.++..||.. +-+++|+|+.. ++..-.+.+.+++.++. .+.++|||.+.
T Consensus 167 ~QRv~iArAL~~---~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHd 221 (331)
T PRK15079 167 CQRIGIARALIL---EPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHD 221 (331)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 467778888864 66999999984 55555566667776642 34457777643
No 230
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=32.53 E-value=79 Score=22.69 Aligned_cols=50 Identities=10% Similarity=0.031 Sum_probs=33.9
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC--CCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC--SQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~--~~~s~LiI~g 54 (63)
-++.++..||.. +-+++|+|+.. ++..-.+.+.+.+.++. .+.+++||..
T Consensus 164 ~QRv~iArAL~~---~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itH 217 (330)
T PRK15093 164 CQKVMIAIALAN---QPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISH 217 (330)
T ss_pred HHHHHHHHHHHC---CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 356677777765 56999999984 55555667777777753 2445777754
No 231
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=32.36 E-value=1.1e+02 Score=21.03 Aligned_cols=50 Identities=12% Similarity=0.076 Sum_probs=32.7
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC--CCceeEEEecc
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC--SQVSLSARLGI 55 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~--~~~s~LiI~g~ 55 (63)
++++|..||- .+-+++|+|+.. ++..-.+.+.+.+.++. .+..++++...
T Consensus 167 qrv~lAral~---~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~ 220 (269)
T cd03294 167 QRVGLARALA---VDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHD 220 (269)
T ss_pred HHHHHHHHHh---cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 5667777775 467999999984 55555666777776652 24446666543
No 232
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=32.22 E-value=1.1e+02 Score=20.83 Aligned_cols=50 Identities=12% Similarity=0.131 Sum_probs=32.9
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEecc
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLGI 55 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g~ 55 (63)
++++|..||-. +-+++++|+.. ++..-.+.+.+.+.++.-+..++++...
T Consensus 163 qrv~laral~~---~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~ 214 (260)
T PRK10744 163 QRLCIARGIAI---RPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHN 214 (260)
T ss_pred HHHHHHHHHHC---CCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 56667777654 77999999994 5555566777788776323345565443
No 233
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=32.19 E-value=85 Score=20.70 Aligned_cols=49 Identities=8% Similarity=0.081 Sum_probs=31.8
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCC--CceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCS--QVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~--~~s~LiI~g 54 (63)
++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++.. +..++++..
T Consensus 138 qrv~la~al~~---~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH 190 (230)
T TIGR03410 138 QQLAIARALVT---RPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQ 190 (230)
T ss_pred HHHHHHHHHhc---CCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeC
Confidence 55666666654 66999999994 555556667777776532 334666643
No 234
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=32.12 E-value=95 Score=20.59 Aligned_cols=50 Identities=14% Similarity=0.203 Sum_probs=33.0
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC--CCceeEEEecc
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC--SQVSLSARLGI 55 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~--~~~s~LiI~g~ 55 (63)
++++|..||-. +-+++++|+.. ++..-.+.+.+.+.++. -+..++++...
T Consensus 152 qrv~la~al~~---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~ 205 (243)
T TIGR02315 152 QRVAIARALAQ---QPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQ 205 (243)
T ss_pred HHHHHHHHHhc---CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 56777777764 66999999984 55555666777777642 13346666543
No 235
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=32.11 E-value=91 Score=23.84 Aligned_cols=48 Identities=17% Similarity=0.102 Sum_probs=35.0
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEecc
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLGI 55 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g~ 55 (63)
++++|..||. .+-+++++|+.. ++..-...+.+.+.+++ + .+++|.+.
T Consensus 450 qrv~la~al~---~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~viivsHd 499 (552)
T TIGR03719 450 NRVHLAKTLK---SGGNVLLLDEPTNDLDVETLRALEEALLEFA-G-CAVVISHD 499 (552)
T ss_pred HHHHHHHHHh---hCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC-C-eEEEEeCC
Confidence 5677777775 467999999984 66677788888888764 3 46666543
No 236
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=31.90 E-value=1.2e+02 Score=20.41 Aligned_cols=51 Identities=14% Similarity=0.074 Sum_probs=33.7
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC-CCceeEEEecc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC-SQVSLSARLGI 55 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~~~s~LiI~g~ 55 (63)
.++++|..||-. +-+++++|+.. ++..-.+.+.+.+.++. .+..++++...
T Consensus 144 ~qrv~laral~~---~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~ 197 (255)
T PRK11231 144 RQRAFLAMVLAQ---DTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHD 197 (255)
T ss_pred HHHHHHHHHHhc---CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECC
Confidence 356677777765 56999999994 55555667777777642 34456666543
No 237
>PHA02562 46 endonuclease subunit; Provisional
Probab=31.90 E-value=1.6e+02 Score=22.12 Aligned_cols=40 Identities=13% Similarity=0.201 Sum_probs=28.7
Q ss_pred CCcEEEEecCC---CCCCChHHHHHHHHhcCCCceeEEEecccC
Q psy5946 17 QDDLHIVKDLV---LPVDDPKYLENLVEERCSQVSLSARLGIRD 57 (63)
Q Consensus 17 q~~LiIvD~l~---l~~~KTk~L~~~l~~~~~~~s~LiI~g~~~ 57 (63)
+-+++|+|+.. ++..-...+.+.+.++ .+..+++|.+...
T Consensus 496 ~~~~lilDEp~~~~ld~~~~~~~~~~l~~~-~~~~iiiish~~~ 538 (562)
T PHA02562 496 DTNLLILDEVFDGALDAEGTKALLSILDSL-KDTNVFVISHKDH 538 (562)
T ss_pred CcCeEEEecccCcccchhHHHHHHHHHHhC-CCCeEEEEECchh
Confidence 67999999872 6666667788888887 5545677765543
No 238
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=31.65 E-value=81 Score=24.63 Aligned_cols=46 Identities=26% Similarity=0.393 Sum_probs=35.9
Q ss_pred hhcCCcEEEEecCCCCC-CChHHHHHHHHhcCCCceeEEEecccCCcCCC
Q psy5946 14 KLMQDDLHIVKDLVLPV-DDPKYLENLVEERCSQVSLSARLGIRDLQYDD 62 (63)
Q Consensus 14 K~~q~~LiIvD~l~l~~-~KTk~L~~~l~~~~~~~s~LiI~g~~~~~~~~ 62 (63)
+-.--++-|||-.+.++ ...+.+++.|.++|.. .+|...+||.|++
T Consensus 182 ~~~~P~IAIvDf~~~~~~~Ef~~f~~~f~~~G~~---~vI~d~~~L~y~~ 228 (445)
T PF14403_consen 182 RVEKPNIAIVDFLEYPTLSEFEVFQRLFEEHGYD---CVICDPRDLEYRD 228 (445)
T ss_pred cCCCCcEEEEecccCCccchHHHHHHHHHHcCCc---eEecChHHceecC
Confidence 33445888999998775 5788999999988875 4566699999976
No 239
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=31.60 E-value=1.3e+02 Score=20.76 Aligned_cols=51 Identities=6% Similarity=0.113 Sum_probs=34.0
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC-CCceeEEEecc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC-SQVSLSARLGI 55 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~~~s~LiI~g~ 55 (63)
.|+++|..||.. +-+++|+|+.. ++..--+.+.+.+.++. .+..++++...
T Consensus 143 ~qrv~laral~~---~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~ 196 (275)
T PRK13639 143 KKRVAIAGILAM---KPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHD 196 (275)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 467778888754 77999999994 55555566777777652 24446666543
No 240
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=31.54 E-value=74 Score=25.57 Aligned_cols=39 Identities=13% Similarity=0.147 Sum_probs=29.0
Q ss_pred cEEEEecCCCCCCChHHHHHHHHhcCCCceeEEEecccCCc
Q psy5946 19 DLHIVKDLVLPVDDPKYLENLVEERCSQVSLSARLGIRDLQ 59 (63)
Q Consensus 19 ~LiIvD~l~l~~~KTk~L~~~l~~~~~~~s~LiI~g~~~~~ 59 (63)
+++|||++..- +..-|..+++.+.-+.++++|...+||+
T Consensus 267 dvlIvDEaSMv--d~~lm~~ll~al~~~~rlIlvGD~~QL~ 305 (615)
T PRK10875 267 DVLVVDEASMV--DLPMMARLIDALPPHARVIFLGDRDQLA 305 (615)
T ss_pred CeEEEChHhcc--cHHHHHHHHHhcccCCEEEEecchhhcC
Confidence 79999998633 4666777777765554688888888886
No 241
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=31.45 E-value=85 Score=23.08 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=30.3
Q ss_pred hhHHHHhhhhcCCcEEE-EecCCCCCCChHHHHHHHHhcCC
Q psy5946 6 GLTSTLSIKLMQDDLHI-VKDLVLPVDDPKYLENLVEERCS 45 (63)
Q Consensus 6 GLk~ALS~K~~q~~LiI-vD~l~l~~~KTk~L~~~l~~~~~ 45 (63)
+|-.-|-+|...|++++ |||.+-+..++.+...+++.+.|
T Consensus 26 AL~n~l~Ar~~~G~~iLRiEDtD~~R~~~~~~~~I~~dL~w 66 (299)
T PRK05710 26 ALGSWLDARAHGGRWLLRIEDIDPPREVPGAADAILADLEW 66 (299)
T ss_pred HHHHHHHHHHcCCEEEEEECcCCCCccchHHHHHHHHHHHH
Confidence 45566788899999886 89988888888777777766543
No 242
>PF11137 DUF2909: Protein of unknown function (DUF2909); InterPro: IPR021313 This is a family of proteins conserved in Proteobacteria of unknown function.
Probab=31.37 E-value=26 Score=20.48 Aligned_cols=13 Identities=38% Similarity=0.330 Sum_probs=11.3
Q ss_pred ChhhhhhHHHHhh
Q psy5946 1 MSIVLGLTSTLSI 13 (63)
Q Consensus 1 ~vR~lGLk~ALS~ 13 (63)
|+|.||.|+.||+
T Consensus 33 m~~~L~~RV~lS~ 45 (63)
T PF11137_consen 33 MVKALGRRVGLSA 45 (63)
T ss_pred HHHHHHHHHHHHH
Confidence 5789999999996
No 243
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=31.31 E-value=1.3e+02 Score=21.50 Aligned_cols=38 Identities=18% Similarity=0.228 Sum_probs=31.7
Q ss_pred EEecCCCCCCChHHHHHHHHhcCCCceeEEEecccCCc
Q psy5946 22 IVKDLVLPVDDPKYLENLVEERCSQVSLSARLGIRDLQ 59 (63)
Q Consensus 22 IvD~l~l~~~KTk~L~~~l~~~~~~~s~LiI~g~~~~~ 59 (63)
++=|...|.-.--+|.+.+..+|..--+.|+.|+-|.|
T Consensus 52 lllDvrMPg~sGlelq~~L~~~~~~~PVIfiTGhgDIp 89 (202)
T COG4566 52 LLLDVRMPGMSGLELQDRLAERGIRLPVIFLTGHGDIP 89 (202)
T ss_pred EEEecCCCCCchHHHHHHHHhcCCCCCEEEEeCCCChH
Confidence 45567788889999999999999873399999998875
No 244
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=31.00 E-value=93 Score=20.70 Aligned_cols=50 Identities=12% Similarity=-0.012 Sum_probs=28.5
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecC--CCCCCChHHHHHHHHhcCCCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDL--VLPVDDPKYLENLVEERCSQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l--~l~~~KTk~L~~~l~~~~~~~s~LiI~g 54 (63)
-++++|..||- .+-+++++|+. .++..-.+.+.+.+.+.--+.+++++.+
T Consensus 110 ~qrv~la~al~---~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~vsH 161 (213)
T PRK15177 110 KTHLAFAINLL---LPCRLYIADGKLYTGDNATQLRMQAALACQLQQKGLIVLTH 161 (213)
T ss_pred HHHHHHHHHHh---cCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcEEEEEC
Confidence 35667777774 46789999995 3544444455555532111224666543
No 245
>PRK06893 DNA replication initiation factor; Validated
Probab=30.86 E-value=72 Score=21.58 Aligned_cols=43 Identities=19% Similarity=0.122 Sum_probs=24.3
Q ss_pred hhcCCcEEEEecCCCCCCCh---HHHHHHHHhcCCCceeEEEeccc
Q psy5946 14 KLMQDDLHIVKDLVLPVDDP---KYLENLVEERCSQVSLSARLGIR 56 (63)
Q Consensus 14 K~~q~~LiIvD~l~l~~~KT---k~L~~~l~~~~~~~s~LiI~g~~ 56 (63)
++.+.+++++||+..-..+. ..|-..+..+.-..+.++|-+++
T Consensus 88 ~~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~ 133 (229)
T PRK06893 88 NLEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISAD 133 (229)
T ss_pred hcccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 55678999999997544332 24555666543222344444443
No 246
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=30.74 E-value=1.7e+02 Score=19.96 Aligned_cols=49 Identities=12% Similarity=0.169 Sum_probs=32.2
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC--CCceeEEEe
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC--SQVSLSARL 53 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~--~~~s~LiI~ 53 (63)
.|+++|..||- .+-+++++|+.. ++..-.+.+.+.+.++. .+..+++|.
T Consensus 156 ~qrv~laral~---~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivs 208 (261)
T PRK14258 156 QQRLCIARALA---VKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVS 208 (261)
T ss_pred HHHHHHHHHHh---cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 35677777775 567999999994 55555566677777642 344456654
No 247
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=30.70 E-value=1.1e+02 Score=20.80 Aligned_cols=54 Identities=15% Similarity=0.165 Sum_probs=34.3
Q ss_pred hhhhhhHHHHhhh----hcCCcEEEEecCC--CCCCChHHHHHHHHhcC-CCceeEEEecc
Q psy5946 2 SIVLGLTSTLSIK----LMQDDLHIVKDLV--LPVDDPKYLENLVEERC-SQVSLSARLGI 55 (63)
Q Consensus 2 vR~lGLk~ALS~K----~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~~~s~LiI~g~ 55 (63)
.|+++|..||..+ -.+.+++++|+.. ++..-.+.+.+.+.++. -+..++++...
T Consensus 132 ~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~ 192 (248)
T PRK03695 132 WQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHD 192 (248)
T ss_pred HHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 3677777777642 1255899999984 55555667777777652 34446666443
No 248
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=30.65 E-value=97 Score=24.65 Aligned_cols=41 Identities=15% Similarity=0.121 Sum_probs=28.2
Q ss_pred CCcEEEEecCCCCCCChHHHHHHHHhcCCCceeEEEecccCCc
Q psy5946 17 QDDLHIVKDLVLPVDDPKYLENLVEERCSQVSLSARLGIRDLQ 59 (63)
Q Consensus 17 q~~LiIvD~l~l~~~KTk~L~~~l~~~~~~~s~LiI~g~~~~~ 59 (63)
.-+++|||++..- ...-|..+++...-+.+++++...+||+
T Consensus 259 ~~dvlIiDEaSMv--d~~l~~~ll~al~~~~rlIlvGD~~QLp 299 (586)
T TIGR01447 259 PLDVLVVDEASMV--DLPLMAKLLKALPPNTKLILLGDKNQLP 299 (586)
T ss_pred cccEEEEcccccC--CHHHHHHHHHhcCCCCEEEEECChhhCC
Confidence 3479999998632 3445667777665454588888788876
No 249
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=30.41 E-value=1.4e+02 Score=19.65 Aligned_cols=49 Identities=16% Similarity=0.120 Sum_probs=31.9
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC-CCceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC-SQVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~~~s~LiI~g 54 (63)
|++.|..||.. +-+++++|+.. ++..-.+.+.+.+.++. .+..++++..
T Consensus 131 ~rv~laral~~---~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH 182 (223)
T TIGR03740 131 QRLGIAIALLN---HPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSH 182 (223)
T ss_pred HHHHHHHHHhc---CCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcC
Confidence 55666666654 66999999994 65555667777777653 3434555543
No 250
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=30.35 E-value=1.1e+02 Score=21.94 Aligned_cols=51 Identities=10% Similarity=0.113 Sum_probs=34.5
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC-CCceeEEEeccc
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC-SQVSLSARLGIR 56 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~~~s~LiI~g~~ 56 (63)
++++|..||. .+-+++++|+.. ++..-.+.+.+.+..+. .+..+++|....
T Consensus 183 qRvaiAraL~---~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~ 236 (320)
T PRK13631 183 RRVAIAGILA---IQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTM 236 (320)
T ss_pred HHHHHHHHHH---cCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH
Confidence 5677777775 478999999994 55555666777776652 344577775543
No 251
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=30.25 E-value=1.2e+02 Score=21.83 Aligned_cols=51 Identities=16% Similarity=0.071 Sum_probs=34.0
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC--CCceeEEEecc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC--SQVSLSARLGI 55 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~--~~~s~LiI~g~ 55 (63)
-++.++..||.. +-+++|+|+.. ++..-...+.+.+.++. -+.++|+|.+.
T Consensus 159 ~QRv~iArAL~~---~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHd 213 (326)
T PRK11022 159 SQRVMIAMAIAC---RPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHD 213 (326)
T ss_pred HHHHHHHHHHHh---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 456777778775 66899999994 55545556666676642 23357887644
No 252
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=30.25 E-value=90 Score=21.18 Aligned_cols=51 Identities=8% Similarity=0.175 Sum_probs=34.9
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC--CCceeEEEecc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC--SQVSLSARLGI 55 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~--~~~s~LiI~g~ 55 (63)
-++++|..||-. +-+++++|+.. ++..-.+.+.+.+.++. -+.+++++...
T Consensus 158 ~qrv~laral~~---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~ 212 (262)
T PRK09984 158 QQRVAIARALMQ---QAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQ 212 (262)
T ss_pred HHHHHHHHHHhc---CCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 356777777754 67999999994 66666778888888752 13346666543
No 253
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=30.23 E-value=60 Score=29.53 Aligned_cols=42 Identities=14% Similarity=0.079 Sum_probs=28.8
Q ss_pred cCCcEEEEecCCCCCCChHHHHHHHHhc-CCCceeEEEecccCCc
Q psy5946 16 MQDDLHIVKDLVLPVDDPKYLENLVEER-CSQVSLSARLGIRDLQ 59 (63)
Q Consensus 16 ~q~~LiIvD~l~l~~~KTk~L~~~l~~~-~~~~s~LiI~g~~~~~ 59 (63)
..++++|||++.. ..++.|..+++.- .-+..+++|....||+
T Consensus 528 ~~~~vlIVDEAsM--l~~~~~~~Ll~~a~~~garvVlvGD~~QL~ 570 (1960)
T TIGR02760 528 SNKDIFVVDEANK--LSNNELLKLIDKAEQHNSKLILLNDSAQRQ 570 (1960)
T ss_pred CCCCEEEEECCCC--CCHHHHHHHHHHHhhcCCEEEEEcChhhcC
Confidence 5789999999963 2455666666543 2443588888888876
No 254
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=30.20 E-value=1.2e+02 Score=19.86 Aligned_cols=49 Identities=8% Similarity=0.053 Sum_probs=32.9
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC--CCceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC--SQVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~--~~~s~LiI~g 54 (63)
+++.|..||.. +-+++++|+.. ++..-.+.+.+.+.++. .+.+++++..
T Consensus 138 qr~~la~al~~---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH 190 (220)
T cd03265 138 RRLEIARSLVH---RPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTH 190 (220)
T ss_pred HHHHHHHHHhc---CCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 56777777765 66899999994 55555667777777642 2434666654
No 255
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=30.06 E-value=1.5e+02 Score=22.48 Aligned_cols=48 Identities=10% Similarity=0.172 Sum_probs=32.5
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEe
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARL 53 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~ 53 (63)
++++|.-|| +++.+++|+|+.. ++..-.+.+.+.+.++..++.+++|.
T Consensus 487 QRi~LARal---l~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~Vt 536 (582)
T PRK11176 487 QRIAIARAL---LRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIA 536 (582)
T ss_pred HHHHHHHHH---HhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 455555555 4577999999994 66666677888888764454455554
No 256
>KOG3062|consensus
Probab=30.01 E-value=1.9e+02 Score=21.68 Aligned_cols=57 Identities=18% Similarity=0.221 Sum_probs=36.4
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCCCCC---------CChHHHHHHHHh---cCCCceeEEEecccCCcC
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLVLPV---------DDPKYLENLVEE---RCSQVSLSARLGIRDLQY 60 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~l~~---------~KTk~L~~~l~~---~~~~~s~LiI~g~~~~~~ 60 (63)
.|+--|+.||-++-.-....|+|+..+-- .+-|.|+..+.. |.++++-++|. +-|+|
T Consensus 16 trA~~L~~~l~~~~~K~~v~ii~deslg~~~ns~y~~s~~EK~lRg~L~S~v~R~Lsk~~iVI~--DslNy 84 (281)
T KOG3062|consen 16 TRAVELREALKERGTKQSVRIIDDESLGIEKNSNYGDSQAEKALRGKLRSAVDRSLSKGDIVIV--DSLNY 84 (281)
T ss_pred hHHHHHHHHHHhhcccceEEEechhhcCCCCcccccccHHHHHHHHHHHHHHHhhcccCcEEEE--ecccc
Confidence 36777899999888333778888765433 346777777765 55654344442 55666
No 257
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=29.71 E-value=1.2e+02 Score=20.88 Aligned_cols=50 Identities=12% Similarity=0.074 Sum_probs=32.3
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhc--CCCceeEEEecc
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEER--CSQVSLSARLGI 55 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~--~~~~s~LiI~g~ 55 (63)
++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++ ..+..+++|...
T Consensus 140 qrl~laraL~~---~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd 193 (257)
T PRK11247 140 QRVALARALIH---RPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHD 193 (257)
T ss_pred HHHHHHHHHhc---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 56777777754 77999999994 5554555666777664 134346666543
No 258
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=29.60 E-value=1.2e+02 Score=23.52 Aligned_cols=56 Identities=14% Similarity=0.178 Sum_probs=41.0
Q ss_pred hhhhhhHHHHhh---hhcCCcEEEEecCCCCCCChHHHHHHHHhcCCCceeEEEecccCC
Q psy5946 2 SIVLGLTSTLSI---KLMQDDLHIVKDLVLPVDDPKYLENLVEERCSQVSLSARLGIRDL 58 (63)
Q Consensus 2 vR~lGLk~ALS~---K~~q~~LiIvD~l~l~~~KTk~L~~~l~~~~~~~s~LiI~g~~~~ 58 (63)
.|..+++.+++. +.+..++++|||.-.--.-.+.+.+.|++.|..+ +=+.-++-.+
T Consensus 330 ~R~~~v~~~f~~~~~~i~gk~VlLVDDvittGtTl~~~~~~Lk~aGA~e-V~v~i~sPpi 388 (471)
T PRK06781 330 LREQGVKMKLSAVRGVVEGKRVVMIDDSIVRGTTSKRIVRMLREAGATE-VHVRIASPPL 388 (471)
T ss_pred HHHHHHhcceeccccccCCceEEEEeceeccchHHHHHHHHHHHcCCcE-EEEEECCCCc
Confidence 367777777763 4555679999999877778888999999988874 6555555433
No 259
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=29.52 E-value=1.6e+02 Score=18.88 Aligned_cols=42 Identities=14% Similarity=-0.114 Sum_probs=33.8
Q ss_pred hhhcCCcEEEEecCCCCCCChHHHHHHHHhcCCCceeEEEeccc
Q psy5946 13 IKLMQDDLHIVKDLVLPVDDPKYLENLVEERCSQVSLSARLGIR 56 (63)
Q Consensus 13 ~K~~q~~LiIvD~l~l~~~KTk~L~~~l~~~~~~~s~LiI~g~~ 56 (63)
..+..+|++|+=+..-.++.+-...+.++++|.. +..|.+..
T Consensus 97 ~~~~~~Dv~I~iS~SG~t~~~i~~~~~ak~~Ga~--vI~IT~~~ 138 (177)
T cd05006 97 ALGQPGDVLIGISTSGNSPNVLKALEAAKERGMK--TIALTGRD 138 (177)
T ss_pred HhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCE--EEEEeCCC
Confidence 4578899999999988999999999999998875 55555443
No 260
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=29.45 E-value=1.3e+02 Score=22.06 Aligned_cols=52 Identities=10% Similarity=0.091 Sum_probs=36.1
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC--CCceeEEEecccC
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC--SQVSLSARLGIRD 57 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~--~~~s~LiI~g~~~ 57 (63)
++.+|..||.. +-+++++|+.. ++..-++.+.+.+.++. .+..+++|.+..+
T Consensus 147 QRV~IARAL~~---~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~ 202 (343)
T TIGR02314 147 QRVAIARALAS---NPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD 202 (343)
T ss_pred HHHHHHHHHHh---CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 56777777764 66999999994 66666777777777752 3444777765443
No 261
>PRK08116 hypothetical protein; Validated
Probab=29.37 E-value=98 Score=21.77 Aligned_cols=41 Identities=22% Similarity=0.183 Sum_probs=24.3
Q ss_pred hhhcCCcEEEEecCCCCCCChH---HHHHHHHhc-CCCceeEEEec
Q psy5946 13 IKLMQDDLHIVKDLVLPVDDPK---YLENLVEER-CSQVSLSARLG 54 (63)
Q Consensus 13 ~K~~q~~LiIvD~l~l~~~KTk---~L~~~l~~~-~~~~s~LiI~g 54 (63)
..+++.+|+|+||+..+..... .|-+++..| .-+ ..+||.+
T Consensus 174 ~~l~~~dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~-~~~IiTs 218 (268)
T PRK08116 174 RSLVNADLLILDDLGAERDTEWAREKVYNIIDSRYRKG-LPTIVTT 218 (268)
T ss_pred HHhcCCCEEEEecccCCCCCHHHHHHHHHHHHHHHHCC-CCEEEEC
Confidence 3467889999999976544322 344555554 233 3555543
No 262
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=29.16 E-value=1.4e+02 Score=20.46 Aligned_cols=50 Identities=12% Similarity=0.105 Sum_probs=32.5
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC--CCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC--SQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~--~~~s~LiI~g 54 (63)
-++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++. .+..++++..
T Consensus 126 ~qrv~laral~~---~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH 179 (251)
T PRK09544 126 TQRVLLARALLN---RPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSH 179 (251)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 356777777764 56899999984 55545566677776542 2444666643
No 263
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=29.14 E-value=52 Score=29.86 Aligned_cols=40 Identities=8% Similarity=0.003 Sum_probs=26.7
Q ss_pred CCcEEEEecCC-CCCCChHHHHHHHHhcCC-CceeEEEecccCCc
Q psy5946 17 QDDLHIVKDLV-LPVDDPKYLENLVEERCS-QVSLSARLGIRDLQ 59 (63)
Q Consensus 17 q~~LiIvD~l~-l~~~KTk~L~~~l~~~~~-~~s~LiI~g~~~~~ 59 (63)
.++++|||+.. ++. ..+..+++...- +..+++|...+|||
T Consensus 1062 ~~~llIVDEaSMv~~---~~m~~Ll~~~~~~garvVLVGD~~QL~ 1103 (1747)
T PRK13709 1062 SNTLFLLDESSMVGN---TDMARAYALIAAGGGRAVSSGDTDQLQ 1103 (1747)
T ss_pred CCcEEEEEccccccH---HHHHHHHHhhhcCCCEEEEecchHhcC
Confidence 56899999985 444 444555544332 33588998888886
No 264
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=29.12 E-value=1.5e+02 Score=19.61 Aligned_cols=50 Identities=8% Similarity=0.007 Sum_probs=33.1
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC-CCceeEEEecc
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC-SQVSLSARLGI 55 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~~~s~LiI~g~ 55 (63)
|++++..||.. +-+++++|+.. ++..-.+.+.+.+.++. .+..++++...
T Consensus 150 qrl~laral~~---~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~ 202 (226)
T cd03234 150 RRVSIAVQLLW---DPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQ 202 (226)
T ss_pred HHHHHHHHHHh---CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 56677777765 56999999994 66656677777777642 34445555443
No 265
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=29.08 E-value=1.2e+02 Score=20.16 Aligned_cols=51 Identities=10% Similarity=0.102 Sum_probs=34.4
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC-CCceeEEEecc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC-SQVSLSARLGI 55 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~~~s~LiI~g~ 55 (63)
.++++|..||-. +-+++|+|+.. ++..-.+.+.+.+.++. -+.+++++...
T Consensus 119 ~qrv~laral~~---~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~ 172 (223)
T TIGR03771 119 RQRVLVARALAT---RPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHD 172 (223)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 356777777765 66999999994 66666677777887642 24446666543
No 266
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=28.98 E-value=1.6e+02 Score=19.21 Aligned_cols=49 Identities=10% Similarity=0.070 Sum_probs=29.6
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHH--HHHhc-CCCceeEEEe
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLEN--LVEER-CSQVSLSARL 53 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~--~l~~~-~~~~s~LiI~ 53 (63)
.++++|..||.. +-+++++|+.. ++..-.+.+.+ ++..+ ..+..++++.
T Consensus 146 ~qrv~laral~~---~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~s 199 (218)
T cd03290 146 RQRICVARALYQ---NTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVT 199 (218)
T ss_pred HHHHHHHHHHhh---CCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 367777777776 45899999984 55444455554 44433 3444455554
No 267
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=28.91 E-value=1.2e+02 Score=22.17 Aligned_cols=50 Identities=12% Similarity=0.038 Sum_probs=35.5
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC-CCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC-SQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~~~s~LiI~g 54 (63)
-|+++|..||.. +-+++|+|+.. ++..-.+.+.+.+.++. .+.+++++.+
T Consensus 178 kqrv~lA~aL~~---~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH 230 (340)
T PRK13536 178 KRRLTLARALIN---DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH 230 (340)
T ss_pred HHHHHHHHHHhc---CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 477888888876 56999999994 65556677777887752 3445666644
No 268
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=28.49 E-value=90 Score=26.31 Aligned_cols=54 Identities=13% Similarity=0.087 Sum_probs=34.0
Q ss_pred hhhHHHHhhhhc---CCcEEEEecC--CCCCCChHHHHHHHHhc-CCCceeEEEecccCC
Q psy5946 5 LGLTSTLSIKLM---QDDLHIVKDL--VLPVDDPKYLENLVEER-CSQVSLSARLGIRDL 58 (63)
Q Consensus 5 lGLk~ALS~K~~---q~~LiIvD~l--~l~~~KTk~L~~~l~~~-~~~~s~LiI~g~~~~ 58 (63)
+++..++|.-.+ .-+++++|+. .++..-...+.+.|..+ ..|..++||.+.+++
T Consensus 960 la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l 1019 (1047)
T PRK10246 960 LALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAM 1019 (1047)
T ss_pred HHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHH
Confidence 444445544211 2378999998 46666667777777775 356678888776544
No 269
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=28.32 E-value=61 Score=23.04 Aligned_cols=22 Identities=18% Similarity=-0.064 Sum_probs=18.4
Q ss_pred hHHHHHHHHhcCCCceeEEEeccc
Q psy5946 33 PKYLENLVEERCSQVSLSARLGIR 56 (63)
Q Consensus 33 Tk~L~~~l~~~~~~~s~LiI~g~~ 56 (63)
...+.+.++.+||. +.+|||.+
T Consensus 137 ~e~l~~~~~~yG~~--~~~VDG~D 158 (227)
T cd02011 137 HEELEALFRGYGYE--PYFVEGDD 158 (227)
T ss_pred chhHHHHHHhCCCc--eEEECCCC
Confidence 46789999999996 77899975
No 270
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=28.25 E-value=1.3e+02 Score=20.61 Aligned_cols=49 Identities=6% Similarity=0.066 Sum_probs=32.7
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC-CCceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC-SQVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~~~s~LiI~g 54 (63)
++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++. .+..++++..
T Consensus 143 qrl~laraL~~---~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH 194 (271)
T PRK13638 143 KRVAIAGALVL---QARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSH 194 (271)
T ss_pred HHHHHHHHHHc---CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 56777777754 67999999984 65555666777777652 3434566543
No 271
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=28.20 E-value=1.3e+02 Score=19.88 Aligned_cols=51 Identities=4% Similarity=-0.030 Sum_probs=33.2
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC-CC-ceeEEEecc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC-SQ-VSLSARLGI 55 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~~-~s~LiI~g~ 55 (63)
-|++++..||.. +-+++++|+.. ++..-.+.+.+.+.++. .+ ..++++.+.
T Consensus 77 ~qrv~laral~~---~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~ 131 (177)
T cd03222 77 LQRVAIAAALLR---NATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHD 131 (177)
T ss_pred HHHHHHHHHHhc---CCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 467788888876 56999999984 44444555666666642 22 356776544
No 272
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=27.93 E-value=1.2e+02 Score=20.53 Aligned_cols=49 Identities=14% Similarity=0.101 Sum_probs=31.6
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC--CCceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC--SQVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~--~~~s~LiI~g 54 (63)
++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++. .+..+++|.+
T Consensus 158 qrl~laral~~---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH 210 (258)
T PRK11701 158 QRLQIARNLVT---HPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTH 210 (258)
T ss_pred HHHHHHHHHhc---CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Confidence 56778888854 67999999984 54444555666666532 2444666644
No 273
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=27.93 E-value=88 Score=21.49 Aligned_cols=39 Identities=13% Similarity=0.016 Sum_probs=23.0
Q ss_pred CcEEEEecCC-CCCCChHHHHHHHHhcCCCceeEEEeccc
Q psy5946 18 DDLHIVKDLV-LPVDDPKYLENLVEERCSQVSLSARLGIR 56 (63)
Q Consensus 18 ~~LiIvD~l~-l~~~KTk~L~~~l~~~~~~~s~LiI~g~~ 56 (63)
.=++||||++ ++..+-..+-+.++.+.--+++-+|-+.+
T Consensus 173 ~iViiIDdLDR~~~~~i~~~l~~ik~~~~~~~i~~Il~~D 212 (325)
T PF07693_consen 173 RIVIIIDDLDRCSPEEIVELLEAIKLLLDFPNIIFILAFD 212 (325)
T ss_pred eEEEEEcchhcCCcHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 3456679986 55555666666666653223466665544
No 274
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=27.81 E-value=1.3e+02 Score=19.26 Aligned_cols=35 Identities=6% Similarity=-0.103 Sum_probs=24.9
Q ss_pred EEEecCCCCCCChHHHHHHHHhcCCC-ceeEEEecc
Q psy5946 21 HIVKDLVLPVDDPKYLENLVEERCSQ-VSLSARLGI 55 (63)
Q Consensus 21 iIvD~l~l~~~KTk~L~~~l~~~~~~-~s~LiI~g~ 55 (63)
+-.++...+.|++..+...+++++.. +.+++|+.+
T Consensus 122 ~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~l~igD~ 157 (205)
T TIGR01454 122 IGSDEVPRPKPAPDIVREALRLLDVPPEDAVMVGDA 157 (205)
T ss_pred EecCcCCCCCCChHHHHHHHHHcCCChhheEEEcCC
Confidence 33455556778889999999998875 357777543
No 275
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=27.78 E-value=1e+02 Score=22.03 Aligned_cols=40 Identities=13% Similarity=0.068 Sum_probs=30.6
Q ss_pred hhHHHHhhhhcCCcEEE-EecCCCCCCChHHHHHHHHhcCC
Q psy5946 6 GLTSTLSIKLMQDDLHI-VKDLVLPVDDPKYLENLVEERCS 45 (63)
Q Consensus 6 GLk~ALS~K~~q~~LiI-vD~l~l~~~KTk~L~~~l~~~~~ 45 (63)
+|-.-|.+|...|++++ +||.+-+..++.+-..+++.+.|
T Consensus 22 al~~~l~Ar~~~G~~iLRieDtD~~R~~~~~~~~I~~dL~w 62 (238)
T cd00807 22 ILLNFGYAKKYGGRCNLRFDDTNPEKEEEEYVDSIKEDVKW 62 (238)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCcccchHHHHHHHHHHHH
Confidence 45566788999999887 89998888888777666666543
No 276
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=27.77 E-value=1.4e+02 Score=22.82 Aligned_cols=48 Identities=6% Similarity=0.102 Sum_probs=32.5
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEe
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARL 53 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~ 53 (63)
++++|.-||- ++.+++++|+.. ++..-.+.+.+.+.++..+..+++|.
T Consensus 458 qRi~lARall---~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~it 507 (569)
T PRK10789 458 QRISIARALL---LNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISA 507 (569)
T ss_pred HHHHHHHHHh---cCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 5566666665 477999999994 66655667777787765554444543
No 277
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=27.75 E-value=1.2e+02 Score=17.74 Aligned_cols=44 Identities=18% Similarity=0.080 Sum_probs=29.9
Q ss_pred hhhcCCcEEEEecCCCCCCChHHHHHHHHhcCCCceeEEEecccCC
Q psy5946 13 IKLMQDDLHIVKDLVLPVDDPKYLENLVEERCSQVSLSARLGIRDL 58 (63)
Q Consensus 13 ~K~~q~~LiIvD~l~l~~~KTk~L~~~l~~~~~~~s~LiI~g~~~~ 58 (63)
.....++++|+=+..-.+..+....+.++++|.. ++.|.+..+-
T Consensus 49 ~~~~~~d~vi~is~sg~~~~~~~~~~~ak~~g~~--vi~iT~~~~~ 92 (131)
T PF01380_consen 49 ENLDPDDLVIIISYSGETRELIELLRFAKERGAP--VILITSNSES 92 (131)
T ss_dssp GGCSTTEEEEEEESSSTTHHHHHHHHHHHHTTSE--EEEEESSTTS
T ss_pred ccccccceeEeeeccccchhhhhhhHHHHhcCCe--EEEEeCCCCC
Confidence 4456788888887766666777777777776654 6667655443
No 278
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=27.75 E-value=1.2e+02 Score=20.31 Aligned_cols=50 Identities=14% Similarity=0.108 Sum_probs=33.7
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC-CCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC-SQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~~~s~LiI~g 54 (63)
.|+++|..||.. +-+++++|+.. ++..-.+.+.+.+.++. -+..++++..
T Consensus 157 ~qrv~la~al~~---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH 209 (252)
T CHL00131 157 KKRNEILQMALL---DSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITH 209 (252)
T ss_pred HHHHHHHHHHHc---CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 467788888875 67999999984 55555667777777642 2334666654
No 279
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=27.75 E-value=1.2e+02 Score=21.51 Aligned_cols=40 Identities=15% Similarity=0.206 Sum_probs=31.8
Q ss_pred hhHHHHhhhhcCCcEEE-EecCCCCCCChHHHHHHHHhcCC
Q psy5946 6 GLTSTLSIKLMQDDLHI-VKDLVLPVDDPKYLENLVEERCS 45 (63)
Q Consensus 6 GLk~ALS~K~~q~~LiI-vD~l~l~~~KTk~L~~~l~~~~~ 45 (63)
+|-.-|.+|...|++++ +||.+-+..++.+..++++.+.|
T Consensus 22 al~n~l~Ar~~~G~~iLRieDtD~~R~~~~~~~~I~~dL~w 62 (230)
T cd00418 22 ALFNFAFARKYGGKFILRIEDTDPERSRPEYVESILEDLKW 62 (230)
T ss_pred HHHHHHHHHHcCCeEEEEeCcCCCCCCChHHHHHHHHHHHH
Confidence 45556788989999887 89999888888888888777654
No 280
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=27.50 E-value=1.6e+02 Score=19.73 Aligned_cols=37 Identities=11% Similarity=-0.004 Sum_probs=26.5
Q ss_pred cEEEEecCCCCCCChHHHHHHHHhcCCC-ceeEEEecc
Q psy5946 19 DLHIVKDLVLPVDDPKYLENLVEERCSQ-VSLSARLGI 55 (63)
Q Consensus 19 ~LiIvD~l~l~~~KTk~L~~~l~~~~~~-~s~LiI~g~ 55 (63)
.++.-++...+.|++..+...++.+|.. .++++|+.+
T Consensus 138 ~iv~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l~igDs 175 (224)
T PRK14988 138 LLLSTHTFGYPKEDQRLWQAVAEHTGLKAERTLFIDDS 175 (224)
T ss_pred EEEEeeeCCCCCCCHHHHHHHHHHcCCChHHEEEEcCC
Confidence 3444566666777888888889998886 458887543
No 281
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=27.44 E-value=1.2e+02 Score=21.90 Aligned_cols=50 Identities=12% Similarity=0.129 Sum_probs=33.5
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEecc
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLGI 55 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g~ 55 (63)
++++|..||. .+-+++++|+.. ++..-.+.+.+.+..+.-+..+++|.+.
T Consensus 232 qRl~LARAl~---~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~ 283 (329)
T PRK14257 232 QRLCIARAIA---LEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHS 283 (329)
T ss_pred HHHHHHHHHH---hCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 4667777775 477899999994 5555556677777765334446666543
No 282
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=27.38 E-value=1.4e+02 Score=23.84 Aligned_cols=15 Identities=20% Similarity=-0.050 Sum_probs=11.9
Q ss_pred HHhcCCCceeE-EEeccc
Q psy5946 40 VEERCSQVSLS-ARLGIR 56 (63)
Q Consensus 40 l~~~~~~~s~L-iI~g~~ 56 (63)
|+.+||. +. -|||++
T Consensus 234 f~~~G~~--~~~~vDGhd 249 (617)
T TIGR00204 234 FEELGFN--YIGPVDGHD 249 (617)
T ss_pred HHHcCCc--EEcccCCCC
Confidence 7889996 66 689985
No 283
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=27.19 E-value=1.5e+02 Score=20.96 Aligned_cols=49 Identities=14% Similarity=0.220 Sum_probs=32.7
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g 54 (63)
++++|..||-. +-+++++|+.. ++..-.+.+.+.+.++.-+..++++..
T Consensus 207 qrv~LAraL~~---~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH 257 (305)
T PRK14264 207 QRLCIARCLAV---DPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTH 257 (305)
T ss_pred HHHHHHHHHhc---CCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEc
Confidence 56677777764 66999999984 665566677777776532334556543
No 284
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=27.15 E-value=61 Score=23.71 Aligned_cols=49 Identities=10% Similarity=0.036 Sum_probs=37.9
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCCCCCCChHHHHHHHHhcCCCceeEEE
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCSQVSLSAR 52 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~l~~~KTk~L~~~l~~~~~~~s~LiI 52 (63)
+|+.|.--..=.++++..+-|+|.=+---.|.+.....+.+.|.. ++||
T Consensus 74 irAHGv~~~~~~~~~~~g~~viDaTCP~V~k~~~~v~~~~~~Gy~--ivii 122 (281)
T PRK12360 74 IRSHGVSKKVYKDLKDKGLEIIDATCPFVKKIQNIVEEYYNKGYS--IIIV 122 (281)
T ss_pred EeCCCCCHHHHHHHHHCCCeEEeCCCccchHHHHHHHHHHhCCCE--EEEE
Confidence 577888888888899999999987776667888888888876553 5554
No 285
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=27.04 E-value=2.1e+02 Score=21.53 Aligned_cols=49 Identities=8% Similarity=0.072 Sum_probs=33.5
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g 54 (63)
++++|.-||-. +.+++|+|+.. ++..-.+.+.+.+.++..+..+++|.+
T Consensus 465 qri~laRal~~---~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH 515 (529)
T TIGR02857 465 QRLALARAFLR---DAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTH 515 (529)
T ss_pred HHHHHHHHHhc---CCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 46667777654 56999999994 666666677777877644544555543
No 286
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=26.84 E-value=78 Score=23.44 Aligned_cols=45 Identities=13% Similarity=0.045 Sum_probs=27.1
Q ss_pred HHhhhhcCCcEEEEecC---CC----CCCChHHHHHHHHhcCCCceeEEE-eccc
Q psy5946 10 TLSIKLMQDDLHIVKDL---VL----PVDDPKYLENLVEERCSQVSLSAR-LGIR 56 (63)
Q Consensus 10 ALS~K~~q~~LiIvD~l---~l----~~~KTk~L~~~l~~~~~~~s~LiI-~g~~ 56 (63)
++-..++-++|++|=|- .+ +...+..+.+.++.+||. |+-| ||++
T Consensus 165 ~~A~~~~L~nLi~i~D~N~~q~dg~~~~~~~~~~~~k~~a~Gw~--v~~v~dGhd 217 (332)
T PF00456_consen 165 SLAGHYKLDNLIVIYDSNGIQIDGPTDIVFSEDIAKKFEAFGWN--VIEVCDGHD 217 (332)
T ss_dssp HHHHHTT-TTEEEEEEEESEETTEEGGGTHHSHHHHHHHHTT-E--EEEEEETTB
T ss_pred HHHHHhCCCCEEEEEecCCcccCCCcccccchHHHHHHHHhhhh--hcccccCcH
Confidence 34456667788776332 12 222345678899999996 7776 8765
No 287
>PRK06921 hypothetical protein; Provisional
Probab=26.71 E-value=87 Score=22.06 Aligned_cols=43 Identities=7% Similarity=-0.013 Sum_probs=26.1
Q ss_pred hhhcCCcEEEEecCCC---CCCC-----hHHHHHHHHhcCCCceeEEEecc
Q psy5946 13 IKLMQDDLHIVKDLVL---PVDD-----PKYLENLVEERCSQVSLSARLGI 55 (63)
Q Consensus 13 ~K~~q~~LiIvD~l~l---~~~K-----Tk~L~~~l~~~~~~~s~LiI~g~ 55 (63)
.++.+-+|+|+||+.. .... ...|-.++..|-.....+||.+.
T Consensus 173 ~~~~~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn 223 (266)
T PRK06921 173 NRMKKVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSE 223 (266)
T ss_pred HHhcCCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECC
Confidence 3567789999999954 1111 23567777776443235666543
No 288
>PRK03918 chromosome segregation protein; Provisional
Probab=26.66 E-value=1.1e+02 Score=24.35 Aligned_cols=53 Identities=17% Similarity=0.122 Sum_probs=30.8
Q ss_pred hhhHHHHhhhh-cCCcEEEEecCC--CCCCChHHHHHHHHhc-CCCceeEEEecccC
Q psy5946 5 LGLTSTLSIKL-MQDDLHIVKDLV--LPVDDPKYLENLVEER-CSQVSLSARLGIRD 57 (63)
Q Consensus 5 lGLk~ALS~K~-~q~~LiIvD~l~--l~~~KTk~L~~~l~~~-~~~~s~LiI~g~~~ 57 (63)
++++.||+.=+ ..-+++|+|+.. ++..-...+.+.+..+ .-+..+++|.+..+
T Consensus 799 la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~ 855 (880)
T PRK03918 799 LAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEE 855 (880)
T ss_pred HHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 44556665332 456899999985 4444445566666653 22334777765543
No 289
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=26.58 E-value=1.6e+02 Score=19.72 Aligned_cols=49 Identities=6% Similarity=0.136 Sum_probs=30.8
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC--CCceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC--SQVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~--~~~s~LiI~g 54 (63)
++++|..||.. +-+++++|+.. ++..-...+.+.+.++. .+..++++..
T Consensus 153 qrv~laral~~---~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH 205 (252)
T TIGR03005 153 QRVAIARALAM---RPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTH 205 (252)
T ss_pred HHHHHHHHHHc---CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Confidence 56777777754 66899999995 44433445666666542 3444666644
No 290
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=26.55 E-value=61 Score=23.70 Aligned_cols=50 Identities=8% Similarity=-0.007 Sum_probs=37.7
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCCCCCCChHHHHHHHHhcCCCceeEEEe
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCSQVSLSARL 53 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~l~~~KTk~L~~~l~~~~~~~s~LiI~ 53 (63)
+|+.|.--+.=.++++..+-|+|.=+---.|.+.....+.+.|.. ++||.
T Consensus 71 irAHGv~~~~~~~~~~~gl~viDaTCP~V~kv~~~v~~~~~~Gy~--iiiiG 120 (280)
T TIGR00216 71 IRAHGVPPEVREELEKKGLEVIDATCPLVTKVHNAVKKYAKEGYH--VILIG 120 (280)
T ss_pred EeCCCCCHHHHHHHHHCCCeEEeCCCcccHHHHHHHHHHHhCCCE--EEEEe
Confidence 577777777788888888999987776667888888888876553 55543
No 291
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=26.44 E-value=1.5e+02 Score=22.42 Aligned_cols=43 Identities=14% Similarity=0.114 Sum_probs=33.2
Q ss_pred HhhhhcCCcEEEEecC--CCCCCChHHHHHHHHhc-CCCceeEEEe
Q psy5946 11 LSIKLMQDDLHIVKDL--VLPVDDPKYLENLVEER-CSQVSLSARL 53 (63)
Q Consensus 11 LS~K~~q~~LiIvD~l--~l~~~KTk~L~~~l~~~-~~~~s~LiI~ 53 (63)
||+=+-+-+|+|+|+. .++-..++.|++.+..+ .||..++|=.
T Consensus 142 isaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSs 187 (300)
T COG4152 142 ISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSS 187 (300)
T ss_pred HHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEec
Confidence 5666678899999998 68888999999988774 6886455543
No 292
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=26.33 E-value=1.1e+02 Score=21.07 Aligned_cols=50 Identities=14% Similarity=0.034 Sum_probs=32.9
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC--CCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC--SQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~--~~~s~LiI~g 54 (63)
.++++|..||-. +-+++++|+.. ++..-.+.+.+.+.++. .+..++++..
T Consensus 157 ~qrl~laral~~---~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH 210 (268)
T PRK10419 157 LQRVCLARALAV---EPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITH 210 (268)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEEC
Confidence 356777777765 66999999984 55545566777777652 2434666644
No 293
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=26.31 E-value=1.7e+02 Score=20.53 Aligned_cols=44 Identities=11% Similarity=0.187 Sum_probs=32.5
Q ss_pred hhHHHHhhhhcCCcEEEEecCCCCCCChHHHHHHHHhcCCCceeEEEecc
Q psy5946 6 GLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCSQVSLSARLGI 55 (63)
Q Consensus 6 GLk~ALS~K~~q~~LiIvD~l~l~~~KTk~L~~~l~~~~~~~s~LiI~g~ 55 (63)
|+-.|+.- .+.++..+|+.. .|+.+|+....++|+.+ +-++-|-
T Consensus 82 GipLAI~~--p~~~vtLles~~---Kk~~FL~~~~~eL~L~n-v~i~~~R 125 (215)
T COG0357 82 GIPLAIAF--PDLKVTLLESLG---KKIAFLREVKKELGLEN-VEIVHGR 125 (215)
T ss_pred hhhHHHhc--cCCcEEEEccCc---hHHHHHHHHHHHhCCCC-eEEehhh
Confidence 44455443 566688888653 68999999999999984 8877653
No 294
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=26.31 E-value=2.2e+02 Score=19.45 Aligned_cols=49 Identities=8% Similarity=0.009 Sum_probs=33.8
Q ss_pred HHhhhhcCCcEEEEecCCCCCCChHHHHHHHHhcC-C-CceeEEEecccCC
Q psy5946 10 TLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERC-S-QVSLSARLGIRDL 58 (63)
Q Consensus 10 ALS~K~~q~~LiIvD~l~l~~~KTk~L~~~l~~~~-~-~~s~LiI~g~~~~ 58 (63)
++=.+..+|+-+|.=+..-..-.+..|++.++.+. - +.=+++|.|.+-|
T Consensus 59 ~il~~i~~~~~vi~Ld~~Gk~~sSe~fA~~l~~~~~~G~~i~f~IGG~~Gl 109 (155)
T COG1576 59 AILAAIPKGSYVVLLDIRGKALSSEEFADFLERLRDDGRDISFLIGGADGL 109 (155)
T ss_pred HHHHhcCCCCeEEEEecCCCcCChHHHHHHHHHHHhcCCeEEEEEeCcccC
Confidence 34456666767777777777888999999998643 2 2346777777655
No 295
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=26.23 E-value=1.8e+02 Score=18.35 Aligned_cols=37 Identities=11% Similarity=-0.005 Sum_probs=26.1
Q ss_pred cEEEEecCCC----CCCChHHHHHHHHhcCCC-ceeEEEecc
Q psy5946 19 DLHIVKDLVL----PVDDPKYLENLVEERCSQ-VSLSARLGI 55 (63)
Q Consensus 19 ~LiIvD~l~l----~~~KTk~L~~~l~~~~~~-~s~LiI~g~ 55 (63)
.++..++... ..|++..+...++.+|.. +.+++|+.+
T Consensus 126 ~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~l~vgD~ 167 (184)
T TIGR01993 126 GIFCFDTANPDYLLPKPSPQAYEKALREAGVDPERAIFFDDS 167 (184)
T ss_pred eEEEeecccCccCCCCCCHHHHHHHHHHhCCCccceEEEeCC
Confidence 3555566654 478888999999998877 357777643
No 296
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=26.22 E-value=1.6e+02 Score=19.31 Aligned_cols=51 Identities=8% Similarity=0.079 Sum_probs=33.3
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC--CCceeEEEeccc
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC--SQVSLSARLGIR 56 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~--~~~s~LiI~g~~ 56 (63)
++..|..||-. +-+++++|+.. ++..-.+.+.+.++++. .+..++++....
T Consensus 148 qrv~laral~~---~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~ 202 (220)
T TIGR02982 148 QRVAIARALVH---RPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDN 202 (220)
T ss_pred HHHHHHHHHhc---CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 44555555544 66999999994 66656667777777642 344577775544
No 297
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=26.16 E-value=1.2e+02 Score=23.70 Aligned_cols=51 Identities=14% Similarity=0.197 Sum_probs=37.3
Q ss_pred hhhhhHHHHhh---hhcCCcEEEEecCCCCCCChHHHHHHHHhcCCCceeEEEec
Q psy5946 3 IVLGLTSTLSI---KLMQDDLHIVKDLVLPVDDPKYLENLVEERCSQVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~---K~~q~~LiIvD~l~l~~~KTk~L~~~l~~~~~~~s~LiI~g 54 (63)
|..+++.+++. ..+..++++|||.-..-.-.+...+.+++.|... +-+...
T Consensus 333 R~~~vr~~f~~~~~~~~gk~vllVDDvittG~T~~~~~~~L~~~Ga~~-v~~~~~ 386 (484)
T PRK07272 333 REQGVRMKLSAVSGVVKGKRVVMVDDSIVRGTTSRRIVQLLKEAGAKE-VHVAIA 386 (484)
T ss_pred HHHHHhhCccccccccCCCEEEEEccccCchHHHHHHHHHHHhcCCcE-EEEEEe
Confidence 66677777653 4556689999999777777788888999888874 555444
No 298
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=26.11 E-value=1.6e+02 Score=19.50 Aligned_cols=49 Identities=14% Similarity=0.081 Sum_probs=32.8
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhc-CCCceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEER-CSQVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~-~~~~s~LiI~g 54 (63)
+++.|..||.. +-+++++|+.. ++..-.+.+.+.+.++ ..+..++++.+
T Consensus 152 qrv~laral~~---~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH 203 (248)
T PRK09580 152 KRNDILQMAVL---EPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTH 203 (248)
T ss_pred HHHHHHHHHHc---CCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 56677777765 56999999994 5555567777777664 23444666654
No 299
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=26.03 E-value=2.1e+02 Score=19.86 Aligned_cols=39 Identities=5% Similarity=-0.049 Sum_probs=25.8
Q ss_pred cCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEec
Q psy5946 16 MQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLG 54 (63)
Q Consensus 16 ~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g 54 (63)
+..+++++|+.. ++..-.+.+.+.+.+...+..+++|.+
T Consensus 191 ~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH 231 (276)
T cd03241 191 DAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITH 231 (276)
T ss_pred CCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 488999999985 444445666777777654544555544
No 300
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=25.87 E-value=1.3e+02 Score=20.89 Aligned_cols=50 Identities=8% Similarity=0.057 Sum_probs=32.1
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhc-CCCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEER-CSQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~-~~~~s~LiI~g 54 (63)
.|+++|..||.. +-+++++|+.. ++..-.+.+.+.+.++ ..+..++++.+
T Consensus 149 ~qrv~Laral~~---~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH 201 (264)
T PRK13546 149 RAKLGFSINITV---NPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSH 201 (264)
T ss_pred HHHHHHHHHHhh---CCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcC
Confidence 467788888876 56899999985 4433345666777654 23444555543
No 301
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=25.72 E-value=89 Score=28.63 Aligned_cols=54 Identities=9% Similarity=-0.007 Sum_probs=40.3
Q ss_pred hhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhc-CCCceeEEEecccC
Q psy5946 4 VLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEER-CSQVSLSARLGIRD 57 (63)
Q Consensus 4 ~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~-~~~~s~LiI~g~~~ 57 (63)
++-|..-|+.+-..+.|.|+|+.. +.-.+.+.|.+.|..+ .-|+++++|.+..|
T Consensus 1707 RikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~~ 1763 (1809)
T PRK00635 1707 AIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDPA 1763 (1809)
T ss_pred HHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 455666677655567999999984 6667888999998886 56777888876443
No 302
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=25.68 E-value=1.4e+02 Score=22.89 Aligned_cols=48 Identities=19% Similarity=0.095 Sum_probs=35.1
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEecc
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLGI 55 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g~ 55 (63)
++++|..||. ..-+++++|+.. ++..-...+.+.+.+++ + .+++|...
T Consensus 452 qrv~la~al~---~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-tvi~vtHd 501 (556)
T PRK11819 452 NRLHLAKTLK---QGGNVLLLDEPTNDLDVETLRALEEALLEFP-G-CAVVISHD 501 (556)
T ss_pred HHHHHHHHHh---cCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC-C-eEEEEECC
Confidence 5677777775 578999999994 76667788888888864 3 46666543
No 303
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=25.49 E-value=1.9e+02 Score=22.50 Aligned_cols=55 Identities=7% Similarity=0.105 Sum_probs=37.7
Q ss_pred hhhhhHHHHhh---hhcCCcEEEEecCCCCCCChHHHHHHHHhcCCCceeEEEecccCC
Q psy5946 3 IVLGLTSTLSI---KLMQDDLHIVKDLVLPVDDPKYLENLVEERCSQVSLSARLGIRDL 58 (63)
Q Consensus 3 R~lGLk~ALS~---K~~q~~LiIvD~l~l~~~KTk~L~~~l~~~~~~~s~LiI~g~~~~ 58 (63)
|...++.+++. ..+..++++|||.-..-.--+...+.|.+.|.. ++-+......+
T Consensus 341 R~~~vr~~f~~~~~~v~gK~VlLVDDvitTGaTl~~~~~~L~~aGA~-~V~v~v~ap~i 398 (501)
T PRK09246 341 RKKSVRQKLNAIRAEFKGKNVLLVDDSIVRGTTSEQIVQMAREAGAK-KVYFASAAPPV 398 (501)
T ss_pred HHHHHHhhcCCccccccCCeEEEEeccccccHHHHHHHHHHHHcCCC-EEEEEEEcccc
Confidence 55566767653 345568999999876666778888888888877 36555544433
No 304
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=25.48 E-value=1.5e+02 Score=17.44 Aligned_cols=42 Identities=17% Similarity=0.079 Sum_probs=32.0
Q ss_pred hhcCCcEEEEecCCCCCCChHHHHHHHHhcCCCceeEEEecccC
Q psy5946 14 KLMQDDLHIVKDLVLPVDDPKYLENLVEERCSQVSLSARLGIRD 57 (63)
Q Consensus 14 K~~q~~LiIvD~l~l~~~KTk~L~~~l~~~~~~~s~LiI~g~~~ 57 (63)
.+.+++++|+=+..-.++.+-...+.++++|.. ++.|.+..+
T Consensus 44 ~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~--vi~iT~~~~ 85 (128)
T cd05014 44 MVTPGDVVIAISNSGETDELLNLLPHLKRRGAP--IIAITGNPN 85 (128)
T ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCe--EEEEeCCCC
Confidence 357789999988888888888888888888764 666665544
No 305
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=25.47 E-value=1.6e+02 Score=17.75 Aligned_cols=39 Identities=18% Similarity=0.132 Sum_probs=23.3
Q ss_pred hhhHHHHhhhhcCCcEEEEecCCCCCC--ChHHHHHHHHhc
Q psy5946 5 LGLTSTLSIKLMQDDLHIVKDLVLPVD--DPKYLENLVEER 43 (63)
Q Consensus 5 lGLk~ALS~K~~q~~LiIvD~l~l~~~--KTk~L~~~l~~~ 43 (63)
+.+-.+|-.....+.++++|+.+..=+ -.+.|.+.+.+.
T Consensus 245 l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~ 285 (303)
T PF13304_consen 245 LSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKEL 285 (303)
T ss_dssp HHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhh
Confidence 355555555555559999999985542 234555566543
No 306
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.42 E-value=1.2e+02 Score=25.25 Aligned_cols=42 Identities=7% Similarity=0.007 Sum_probs=25.7
Q ss_pred CCcEEEEecCC--CCCCChHHHHHHHHhc-CCCceeEEEecccCC
Q psy5946 17 QDDLHIVKDLV--LPVDDPKYLENLVEER-CSQVSLSARLGIRDL 58 (63)
Q Consensus 17 q~~LiIvD~l~--l~~~KTk~L~~~l~~~-~~~~s~LiI~g~~~~ 58 (63)
.-+++++|+.- ++..-...+.+.+..+ ..|..++||.+..++
T Consensus 978 ~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~ 1022 (1042)
T TIGR00618 978 VLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEF 1022 (1042)
T ss_pred CCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHH
Confidence 34799999984 4444445566667665 355556677665543
No 307
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=25.39 E-value=1.9e+02 Score=18.65 Aligned_cols=51 Identities=6% Similarity=-0.004 Sum_probs=31.2
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHH-HHHhc-CCCceeEEEecc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLEN-LVEER-CSQVSLSARLGI 55 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~-~l~~~-~~~~s~LiI~g~ 55 (63)
.++.+|..||.. +-+++++|+.. ++..-.+.+.+ ++.++ .-+..++++...
T Consensus 133 ~qrv~laral~~---~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~ 187 (204)
T cd03250 133 KQRISLARAVYS---DADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQ 187 (204)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCC
Confidence 467788888876 55999999984 44433345655 44443 224446666543
No 308
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=25.38 E-value=1.5e+02 Score=21.05 Aligned_cols=50 Identities=10% Similarity=0.051 Sum_probs=34.3
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC-CCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC-SQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~~~s~LiI~g 54 (63)
.|+++|..||.. +-+++++|+.. ++..-.+.+.+.+.++. -+..++++.+
T Consensus 144 ~qrl~la~aL~~---~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH 196 (306)
T PRK13537 144 KRRLTLARALVN---DPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTH 196 (306)
T ss_pred HHHHHHHHHHhC---CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 578888888865 67999999984 55555566777777652 2334666543
No 309
>PRK13371 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=25.22 E-value=65 Score=24.86 Aligned_cols=49 Identities=14% Similarity=-0.063 Sum_probs=38.3
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCCCCCCChHHHHHHHHhcCCCceeEEE
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCSQVSLSAR 52 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~l~~~KTk~L~~~l~~~~~~~s~LiI 52 (63)
+|+.|..-..=.++++..+.|||.=+---.|.+.....+.+.|.. ++||
T Consensus 115 IrAHGv~~~v~~~~~~rgl~iiDATCP~V~kvh~~v~~~~~~Gy~--iIIi 163 (387)
T PRK13371 115 LPAFGATVQEMQLLNEKGCHIVDTTCPWVSKVWNTVEKHKKKDFT--SIIH 163 (387)
T ss_pred EeCCCCCHHHHHHHHHCCCeEEecCCccchHHHHHHHHHHhCCCE--EEEE
Confidence 577888888888899999999987776677888888888876653 4444
No 310
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=25.03 E-value=1.4e+02 Score=20.91 Aligned_cols=50 Identities=12% Similarity=0.038 Sum_probs=33.2
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC-CCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC-SQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~~~s~LiI~g 54 (63)
-++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++. -+..++++.+
T Consensus 141 ~qrv~la~al~~---~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH 193 (303)
T TIGR01288 141 KRRLTLARALIN---DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH 193 (303)
T ss_pred HHHHHHHHHHhc---CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 367778888864 67999999984 55555566777777652 2334666643
No 311
>PLN03073 ABC transporter F family; Provisional
Probab=25.01 E-value=1.5e+02 Score=24.18 Aligned_cols=48 Identities=17% Similarity=0.231 Sum_probs=34.1
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEecc
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLGI 55 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g~ 55 (63)
++++|..||.. +-+++++|+.. ++..-...|.+.+.++ +..++||.+.
T Consensus 351 ~rv~LA~aL~~---~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd 400 (718)
T PLN03073 351 MRIALARALFI---EPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHA 400 (718)
T ss_pred HHHHHHHHHhc---CCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECC
Confidence 56677777764 66899999994 6666677788888875 4446666543
No 312
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=24.99 E-value=59 Score=21.45 Aligned_cols=31 Identities=29% Similarity=0.278 Sum_probs=18.3
Q ss_pred hhhcCCcEEEEecCCCCCCChHH---HHHHHHhc
Q psy5946 13 IKLMQDDLHIVKDLVLPVDDPKY---LENLVEER 43 (63)
Q Consensus 13 ~K~~q~~LiIvD~l~l~~~KTk~---L~~~l~~~ 43 (63)
.++..-+|.|+||+......... |-+++..|
T Consensus 104 ~~l~~~dlLilDDlG~~~~~~~~~~~l~~ii~~R 137 (178)
T PF01695_consen 104 KRLKRVDLLILDDLGYEPLSEWEAELLFEIIDER 137 (178)
T ss_dssp HHHHTSSCEEEETCTSS---HHHHHCTHHHHHHH
T ss_pred CccccccEecccccceeeecccccccchhhhhHh
Confidence 35567799999999876554332 33455554
No 313
>KOG0523|consensus
Probab=24.98 E-value=1.7e+02 Score=24.26 Aligned_cols=46 Identities=17% Similarity=-0.025 Sum_probs=31.2
Q ss_pred HHHhhhhcCCcEEEEecCC---CCC-----CChHHHHHHHHhcCCCceeEEEeccc
Q psy5946 9 STLSIKLMQDDLHIVKDLV---LPV-----DDPKYLENLVEERCSQVSLSARLGIR 56 (63)
Q Consensus 9 ~ALS~K~~q~~LiIvD~l~---l~~-----~KTk~L~~~l~~~~~~~s~LiI~g~~ 56 (63)
+++-.-++-++|+++-|.+ ++. ++..--+..++.+||. +.+|+|++
T Consensus 162 ~s~Ag~l~ldnLVai~D~n~is~~g~t~~~~~~dV~~~r~ea~g~~--~~~V~~~d 215 (632)
T KOG0523|consen 162 MSLAGHLKLDNLVAIYDNNKISIDGATSLGFDEDVYQLRFEAFGWN--VIIVDGGD 215 (632)
T ss_pred HhhhhhcccCCEEEEEccccccCCCCCcccccccHHHHHHHHhCce--EEEEcCcC
Confidence 3455667788999888775 332 2333334478889996 89999876
No 314
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=24.92 E-value=1.5e+02 Score=17.16 Aligned_cols=43 Identities=14% Similarity=0.113 Sum_probs=30.8
Q ss_pred hcCCcEEEEecCCCCCCChHHHHHHHHhcCCCceeEEEecccCCc
Q psy5946 15 LMQDDLHIVKDLVLPVDDPKYLENLVEERCSQVSLSARLGIRDLQ 59 (63)
Q Consensus 15 ~~q~~LiIvD~l~l~~~KTk~L~~~l~~~~~~~s~LiI~g~~~~~ 59 (63)
..+++++|+=+..-.++.+..+.+.++++|.. ++.|.+..+.+
T Consensus 58 ~~~~~~~i~iS~~g~~~~~~~~~~~a~~~g~~--iv~iT~~~~~~ 100 (139)
T cd05013 58 LTPGDVVIAISFSGETKETVEAAEIAKERGAK--VIAITDSANSP 100 (139)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCe--EEEEcCCCCCh
Confidence 46788988888876776677777777877753 67777665543
No 315
>COG0261 RplU Ribosomal protein L21 [Translation, ribosomal structure and biogenesis]
Probab=24.80 E-value=48 Score=21.30 Aligned_cols=35 Identities=17% Similarity=0.070 Sum_probs=26.7
Q ss_pred hhcCCcEEEEecCCCCCCChHHHHHHHHhcCCCceeEEEecccCC
Q psy5946 14 KLMQDDLHIVKDLVLPVDDPKYLENLVEERCSQVSLSARLGIRDL 58 (63)
Q Consensus 14 K~~q~~LiIvD~l~l~~~KTk~L~~~l~~~~~~~s~LiI~g~~~~ 58 (63)
|+.+|+++-|+-++.+...+= .+. .+|+|++.++.
T Consensus 13 kV~~G~~i~vEkl~~e~g~~v---------~f~-~VL~v~~~~~v 47 (103)
T COG0261 13 KVEEGDVIKVEKLDAEPGDKV---------EFD-EVLMVGGGEEV 47 (103)
T ss_pred EEecCCEEEEEEcCCCCCCEE---------EEE-EEEEEcCCCce
Confidence 678899999999987775533 366 59999887644
No 316
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=24.62 E-value=1.7e+02 Score=21.15 Aligned_cols=50 Identities=16% Similarity=0.127 Sum_probs=33.5
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC--CCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC--SQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~--~~~s~LiI~g 54 (63)
-++.++..||.. +-+++|+|+.. ++..-.+.+.++|.++. .+.++++|.+
T Consensus 160 ~QRv~iArAL~~---~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTH 213 (327)
T PRK11308 160 RQRIAIARALML---DPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISH 213 (327)
T ss_pred HHHHHHHHHHHc---CCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 356777788776 45899999994 55555666677776642 2435777754
No 317
>PRK08727 hypothetical protein; Validated
Probab=24.56 E-value=1.2e+02 Score=20.56 Aligned_cols=21 Identities=14% Similarity=0.053 Sum_probs=15.8
Q ss_pred hhcCCcEEEEecCCCCCCChH
Q psy5946 14 KLMQDDLHIVKDLVLPVDDPK 34 (63)
Q Consensus 14 K~~q~~LiIvD~l~l~~~KTk 34 (63)
++.+-+++|+||++.-..++.
T Consensus 90 ~l~~~dlLiIDDi~~l~~~~~ 110 (233)
T PRK08727 90 ALEGRSLVALDGLESIAGQRE 110 (233)
T ss_pred HHhcCCEEEEeCcccccCChH
Confidence 567789999999986554544
No 318
>PRK12754 transketolase; Reviewed
Probab=24.55 E-value=1.9e+02 Score=23.56 Aligned_cols=44 Identities=14% Similarity=-0.103 Sum_probs=28.6
Q ss_pred HhhhhcCCcE-EEEecCC--CCCC----ChHHHHHHHHhcCCCceeEE-Eeccc
Q psy5946 11 LSIKLMQDDL-HIVKDLV--LPVD----DPKYLENLVEERCSQVSLSA-RLGIR 56 (63)
Q Consensus 11 LS~K~~q~~L-iIvD~l~--l~~~----KTk~L~~~l~~~~~~~s~Li-I~g~~ 56 (63)
+-..++=++| +|+|+=. ++.+ -+..+.+.++.+||. ++- |||++
T Consensus 169 ~A~~~kL~nLi~ivD~N~~~idg~~~~~~~~~~~~r~~a~Gw~--vi~vvDG~D 220 (663)
T PRK12754 169 LAGTLKLGKLIAFYDDNGISIDGHVEGWFTDDTAMRFEAYGWH--VIRGIDGHD 220 (663)
T ss_pred HHHHhCCCCEEEEEEcCCCccCcchhhccCccHHHHHHhcCCe--EEeeECCCC
Confidence 3455666776 6677633 2221 245778899999997 665 89874
No 319
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=24.22 E-value=1.4e+02 Score=22.59 Aligned_cols=48 Identities=6% Similarity=-0.030 Sum_probs=34.3
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEecc
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLGI 55 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g~ 55 (63)
++++|..||.. +-+++++|+.. ++..-.+.+.+.+.+++ ..+++|...
T Consensus 445 qrv~la~al~~---~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vsHd 494 (530)
T PRK15064 445 GRMLFGKLMMQ---KPNVLVMDEPTNHMDMESIESLNMALEKYE--GTLIFVSHD 494 (530)
T ss_pred HHHHHHHHHhc---CCCEEEEcCCCCCCCHHHHHHHHHHHHHCC--CEEEEEeCC
Confidence 56677777764 67999999994 66666778888888764 246666543
No 320
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=24.16 E-value=1.3e+02 Score=20.63 Aligned_cols=51 Identities=22% Similarity=0.175 Sum_probs=33.5
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC--CCceeEEEecc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC--SQVSLSARLGI 55 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~--~~~s~LiI~g~ 55 (63)
-++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++. -+..++++...
T Consensus 155 ~qrv~laral~~---~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~ 209 (267)
T PRK15112 155 KQRLGLARALIL---RPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQH 209 (267)
T ss_pred HHHHHHHHHHHh---CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCC
Confidence 356777777764 56999999984 55555567777777642 24346666543
No 321
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=23.82 E-value=55 Score=22.73 Aligned_cols=14 Identities=21% Similarity=-0.045 Sum_probs=10.9
Q ss_pred CCceeEEEecccCC
Q psy5946 45 SQVSLSARLGIRDL 58 (63)
Q Consensus 45 ~~~s~LiI~g~~~~ 58 (63)
-|+++||||.+.|+
T Consensus 86 ~GkkVLIVDDI~DT 99 (192)
T COG2236 86 SGKKVLIVDDIVDT 99 (192)
T ss_pred CCCeEEEEecccCc
Confidence 34579999998875
No 322
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=23.81 E-value=1.3e+02 Score=21.75 Aligned_cols=51 Identities=6% Similarity=0.083 Sum_probs=34.5
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC--CCceeEEEecc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC--SQVSLSARLGI 55 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~--~~~s~LiI~g~ 55 (63)
-++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++. .+..++++.+.
T Consensus 146 ~qRv~lAraL~~---~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~ 200 (343)
T PRK11153 146 KQRVAIARALAS---NPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHE 200 (343)
T ss_pred HHHHHHHHHHHc---CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 356777777754 67999999984 66666777788887753 24346666443
No 323
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=23.69 E-value=2.1e+02 Score=22.41 Aligned_cols=49 Identities=6% Similarity=0.078 Sum_probs=32.6
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g 54 (63)
++++|.-||- ++.+++|+|+.. ++..-.+.+.+.+.++.-+..+++|.+
T Consensus 608 QRlalARall---~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItH 658 (694)
T TIGR03375 608 QAVALARALL---RDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTH 658 (694)
T ss_pred HHHHHHHHHh---cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 4566666665 578999999994 665555667777777644444555543
No 324
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.62 E-value=2.5e+02 Score=20.82 Aligned_cols=51 Identities=12% Similarity=0.180 Sum_probs=35.6
Q ss_pred ChhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC--CCceeEEEec
Q psy5946 1 MSIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC--SQVSLSARLG 54 (63)
Q Consensus 1 ~vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~--~~~s~LiI~g 54 (63)
|.|+-||.-||+. +-+|+..|+.. ++---...+.+++.+++ ++-.+++|.+
T Consensus 150 M~KRvaLARAial---dPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTH 204 (263)
T COG1127 150 MRKRVALARAIAL---DPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTH 204 (263)
T ss_pred HHHHHHHHHHHhc---CCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEC
Confidence 6688889888876 66999999984 55556667777776643 3333666654
No 325
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=23.57 E-value=1.2e+02 Score=17.94 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=16.0
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecC
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDL 26 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l 26 (63)
+++.|..||- ++-+++|+|+.
T Consensus 115 ~rl~la~al~---~~~~llllDEP 135 (137)
T PF00005_consen 115 QRLALARALL---KNPKLLLLDEP 135 (137)
T ss_dssp HHHHHHHHHH---TTSSEEEEEST
T ss_pred HHHHHHHHHH---cCCCEEEEeCC
Confidence 5677777775 46799999985
No 326
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=23.43 E-value=1.6e+02 Score=19.72 Aligned_cols=52 Identities=12% Similarity=0.004 Sum_probs=31.9
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhc-CCCceeEEEecc
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEER-CSQVSLSARLGI 55 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~-~~~~s~LiI~g~ 55 (63)
+++.|..||.... +.+++|+|+.. ++..-.+.+.+.+.++ ..+.++++|...
T Consensus 144 qrv~laral~~~p-~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~ 198 (226)
T cd03270 144 QRIRLATQIGSGL-TGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHD 198 (226)
T ss_pred HHHHHHHHHHhCC-CCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeC
Confidence 5566666666422 11799999984 5555556667777664 234457776654
No 327
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=23.40 E-value=1.9e+02 Score=22.50 Aligned_cols=38 Identities=3% Similarity=0.024 Sum_probs=26.3
Q ss_pred CcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEecc
Q psy5946 18 DDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLGI 55 (63)
Q Consensus 18 ~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g~ 55 (63)
-+++|+|+.. ++..-...+.+.+.++.-+..+++|.+.
T Consensus 463 ~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~ 502 (563)
T TIGR00634 463 VTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHL 502 (563)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEECh
Confidence 4899999984 5555566677788876434457777654
No 328
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=23.36 E-value=2.1e+02 Score=22.98 Aligned_cols=54 Identities=15% Similarity=0.185 Sum_probs=33.8
Q ss_pred hhhhHHHHhh-hhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEecccC
Q psy5946 4 VLGLTSTLSI-KLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLGIRD 57 (63)
Q Consensus 4 ~lGLk~ALS~-K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g~~~ 57 (63)
.++|..|+.. .+...+++|+|+.. ++..-...+.+.+..+.-+..++||.+..+
T Consensus 1097 ~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~ 1153 (1179)
T TIGR02168 1097 LTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKG 1153 (1179)
T ss_pred HHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChh
Confidence 4555555543 23455899999985 555556777788877632334777765543
No 329
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=23.19 E-value=1.8e+02 Score=20.16 Aligned_cols=50 Identities=8% Similarity=0.110 Sum_probs=33.7
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC--CCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC--SQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~--~~~s~LiI~g 54 (63)
.++.+|..||-. +-+++++|+.. ++..-.+.+.+.+.++. -+.+++++..
T Consensus 146 ~qrv~lAral~~---~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH 199 (279)
T PRK13650 146 KQRVAIAGAVAM---RPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITH 199 (279)
T ss_pred HHHHHHHHHHHc---CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 367777777765 67999999984 55555666777776642 2445666653
No 330
>PTZ00089 transketolase; Provisional
Probab=23.18 E-value=2.1e+02 Score=23.00 Aligned_cols=41 Identities=15% Similarity=0.011 Sum_probs=26.2
Q ss_pred hhhcCCcE-EEEecCCCC------CCChHHHHHHHHhcCCCceeEEE-ecc
Q psy5946 13 IKLMQDDL-HIVKDLVLP------VDDPKYLENLVEERCSQVSLSAR-LGI 55 (63)
Q Consensus 13 ~K~~q~~L-iIvD~l~l~------~~KTk~L~~~l~~~~~~~s~LiI-~g~ 55 (63)
...+-++| +|+|+=... ....+.+.+.++.+||. ++-| ||+
T Consensus 173 ~~~~L~nLi~i~d~N~~~i~~~~~~~~~~~~~~~f~a~G~~--~i~v~dG~ 221 (661)
T PTZ00089 173 GHLGLEKLIVLYDDNKITIDGNTDLSFTEDVEKKYEAYGWH--VIEVDNGN 221 (661)
T ss_pred HHhCCCCEEEEEECCCcccccCcccccCccHHHHHHhcCCc--EEEeCCCC
Confidence 34444565 667774322 12246778899999997 5556 887
No 331
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=23.14 E-value=78 Score=27.07 Aligned_cols=43 Identities=14% Similarity=0.175 Sum_probs=30.5
Q ss_pred hcCCcEEEEecCCCCCCChHHHHHHHHhc-CCCceeEEEecccCCc
Q psy5946 15 LMQDDLHIVKDLVLPVDDPKYLENLVEER-CSQVSLSARLGIRDLQ 59 (63)
Q Consensus 15 ~~q~~LiIvD~l~l~~~KTk~L~~~l~~~-~~~~s~LiI~g~~~~~ 59 (63)
....+++|||+... ..++.|..+++.. .-+-.+++|...+|||
T Consensus 431 l~~~~vlIVDEASM--v~~~~m~~LL~~a~~~garvVLVGD~~QLp 474 (988)
T PRK13889 431 LTSRDVLVIDEAGM--VGTRQLERVLSHAADAGAKVVLVGDPQQLQ 474 (988)
T ss_pred cccCcEEEEECccc--CCHHHHHHHHHhhhhCCCEEEEECCHHHcC
Confidence 44678999999863 3466777777643 3343588888888886
No 332
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=23.05 E-value=1.9e+02 Score=20.07 Aligned_cols=50 Identities=10% Similarity=0.089 Sum_probs=31.8
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC-CCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC-SQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~~~s~LiI~g 54 (63)
.++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++. -+.++++|.+
T Consensus 145 ~qrv~laral~~---~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSH 197 (255)
T cd03236 145 LQRVAIAAALAR---DADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEH 197 (255)
T ss_pred HHHHHHHHHHHh---CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 367788888864 56899999995 43333345667776642 2444666644
No 333
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=22.93 E-value=2.3e+02 Score=21.36 Aligned_cols=50 Identities=20% Similarity=0.189 Sum_probs=34.2
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhc--CCCceeEEEecc
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEER--CSQVSLSARLGI 55 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~--~~~~s~LiI~g~ 55 (63)
++.+|..||. .+-+++++|+.. ++..-.+.+.+.+.++ ..+..+++|...
T Consensus 175 qrv~iA~al~---~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd 228 (520)
T TIGR03269 175 QRVVLARQLA---KEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHW 228 (520)
T ss_pred HHHHHHHHHh---cCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCC
Confidence 5667777775 467899999984 6666667776777765 245457777544
No 334
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=22.79 E-value=79 Score=24.20 Aligned_cols=42 Identities=7% Similarity=0.067 Sum_probs=29.2
Q ss_pred CCcEEEEecCCCCCCChHHHHHHHHhcCCCceeEEEecccCCcC
Q psy5946 17 QDDLHIVKDLVLPVDDPKYLENLVEERCSQVSLSARLGIRDLQY 60 (63)
Q Consensus 17 q~~LiIvD~l~l~~~KTk~L~~~l~~~~~~~s~LiI~g~~~~~~ 60 (63)
.+-.||+|+... .-...+...|..+|+++++.|-..+.|++.
T Consensus 243 ~dAfVIlDEaQN--tT~~QmKMfLTRiGf~skmvItGD~tQiDL 284 (348)
T COG1702 243 NDAFVILDEAQN--TTVGQMKMFLTRIGFESKMVITGDITQIDL 284 (348)
T ss_pred CCeEEEEecccc--cchhhhceeeeeecCCceEEEEcCcccccC
Confidence 456899999987 356677888999999954444444444443
No 335
>KOG0572|consensus
Probab=22.59 E-value=2.9e+02 Score=22.15 Aligned_cols=54 Identities=13% Similarity=0.191 Sum_probs=41.6
Q ss_pred hhhhhhHH---HHhhhhcCCcEEEEecCCCCCCChHHHHHHHHhcCCCceeEEEeccc
Q psy5946 2 SIVLGLTS---TLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCSQVSLSARLGIR 56 (63)
Q Consensus 2 vR~lGLk~---ALS~K~~q~~LiIvD~l~l~~~KTk~L~~~l~~~~~~~s~LiI~g~~ 56 (63)
+|.+|.+. +|+.++...++++|||--+--.-.+.+.+.+++-|.++ |-+--.+-
T Consensus 338 iR~~~V~~Kl~~l~~~~~GKrvvlVDDSIVRGtTs~~IVkmlreaGAke-Vh~riAsP 394 (474)
T KOG0572|consen 338 IRQLGVKKKLGPLRQNFEGKRVVLVDDSIVRGTTSSPIVKMLREAGAKE-VHIRIASP 394 (474)
T ss_pred HHHhhhhhhcccchhhcCCceEEEEecceeccCchHHHHHHHHHcCCcE-EEEEecCC
Confidence 46777775 56788999999999999877778888999999888774 65544333
No 336
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=22.53 E-value=2.3e+02 Score=21.65 Aligned_cols=48 Identities=10% Similarity=0.167 Sum_probs=31.9
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEe
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARL 53 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~ 53 (63)
++++|.-||= ++.+++++|+.. ++..-.+.+.+.+.++..++.+++|.
T Consensus 483 QRialARaLl---~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivt 532 (592)
T PRK10790 483 QLLALARVLV---QTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIA 532 (592)
T ss_pred HHHHHHHHHH---hCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 4566776665 566999999994 55555567777787764444444443
No 337
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=22.44 E-value=1.9e+02 Score=19.84 Aligned_cols=50 Identities=10% Similarity=0.157 Sum_probs=33.5
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCC--CceeEEEecc
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCS--QVSLSARLGI 55 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~--~~s~LiI~g~ 55 (63)
++++|..||-. +-+++++|+.. ++..-.+.+.+.+.++.- +..++++...
T Consensus 149 qrl~laral~~---~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~ 202 (271)
T PRK13632 149 QRVAIASVLAL---NPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHD 202 (271)
T ss_pred HHHHHHHHHHc---CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEec
Confidence 56677777764 56999999994 666666777888877521 2346666543
No 338
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=22.37 E-value=1.6e+02 Score=20.13 Aligned_cols=49 Identities=14% Similarity=0.085 Sum_probs=32.2
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC-C-CceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC-S-QVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~-~~s~LiI~g 54 (63)
++++|..||-. +-+++++|+.. ++..-.+.+.+.+.++. . +..++++..
T Consensus 150 qrv~laral~~---~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH 202 (269)
T PRK11831 150 RRAALARAIAL---EPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSH 202 (269)
T ss_pred HHHHHHHHHhc---CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEec
Confidence 56666667654 67999999984 66655667777777752 2 334566643
No 339
>PRK00064 recF recombination protein F; Reviewed
Probab=22.26 E-value=1.5e+02 Score=21.64 Aligned_cols=41 Identities=7% Similarity=-0.078 Sum_probs=27.1
Q ss_pred hhhcCCcEEEEecC--CCCCCChHHHHHHHHhcCCCceeEEEeccc
Q psy5946 13 IKLMQDDLHIVKDL--VLPVDDPKYLENLVEERCSQVSLSARLGIR 56 (63)
Q Consensus 13 ~K~~q~~LiIvD~l--~l~~~KTk~L~~~l~~~~~~~s~LiI~g~~ 56 (63)
.......++++|+. +++....+.+.+.+.++ +. ..||.+++
T Consensus 296 ~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~--~~-qv~it~~~ 338 (361)
T PRK00064 296 EETGEAPILLLDDVASELDDGRRAALLERLKGL--GA-QVFITTTD 338 (361)
T ss_pred HhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc--CC-EEEEEcCC
Confidence 45567899999999 46666667777777653 32 34454443
No 340
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=22.22 E-value=2.4e+02 Score=21.23 Aligned_cols=49 Identities=12% Similarity=0.177 Sum_probs=33.9
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhc-CCCceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEER-CSQVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~-~~~~s~LiI~g 54 (63)
++++|..||. .+-+++++|+.. ++..-.+.+.+.+.++ ..+..+++|.+
T Consensus 150 qrv~la~al~---~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH 201 (506)
T PRK13549 150 QLVEIAKALN---KQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISH 201 (506)
T ss_pred HHHHHHHHHh---cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 5667777775 467899999984 7766677777887775 23444666654
No 341
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=22.21 E-value=2e+02 Score=21.62 Aligned_cols=49 Identities=14% Similarity=0.036 Sum_probs=33.6
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhc-CCCceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEER-CSQVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~-~~~~s~LiI~g 54 (63)
+++.|..||.. +-+++|+|+.. ++..-.+.+.+.+.++ ..+..+++|..
T Consensus 403 qrl~la~al~~---~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsH 454 (501)
T PRK11288 403 QKAILGRWLSE---DMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSS 454 (501)
T ss_pred HHHHHHHHHcc---CCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECC
Confidence 56777777754 66999999994 6776777777777664 23444566543
No 342
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=22.14 E-value=2e+02 Score=17.56 Aligned_cols=32 Identities=9% Similarity=-0.144 Sum_probs=22.8
Q ss_pred EecCCCCCCChHHHHHHHHhcCCC-ceeEEEec
Q psy5946 23 VKDLVLPVDDPKYLENLVEERCSQ-VSLSARLG 54 (63)
Q Consensus 23 vD~l~l~~~KTk~L~~~l~~~~~~-~s~LiI~g 54 (63)
-++.....|++..+...+++++.. ..+++|+.
T Consensus 133 ~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~vgD 165 (183)
T TIGR01509 133 SGDVGRGKPDPDIYLLALKKLGLKPEECLFVDD 165 (183)
T ss_pred cCCCCCCCCCHHHHHHHHHHcCCCcceEEEEcC
Confidence 345556667788899999998876 35777753
No 343
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=22.08 E-value=1.3e+02 Score=22.60 Aligned_cols=51 Identities=12% Similarity=0.061 Sum_probs=35.4
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC--CCceeEEEecc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC--SQVSLSARLGI 55 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~--~~~s~LiI~g~ 55 (63)
-++.+|..||.. +-+++++|+.. ++..-.+.+.+.+.++. .+.+++||.+.
T Consensus 170 ~QRV~LARALa~---~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHd 224 (382)
T TIGR03415 170 QQRVGLARAFAM---DADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHD 224 (382)
T ss_pred HHHHHHHHHHhc---CCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 467788888864 67999999984 55556667777777653 24457777543
No 344
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=22.08 E-value=2.5e+02 Score=18.66 Aligned_cols=42 Identities=2% Similarity=0.015 Sum_probs=25.0
Q ss_pred CCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEecccCCc
Q psy5946 17 QDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLGIRDLQ 59 (63)
Q Consensus 17 q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g~~~~~ 59 (63)
+-|++++| +. ++.+..-.+.+.+.+.+-+-.++++.+.++-+
T Consensus 47 ~pDlvLlD-l~~~l~~~~g~~~i~~i~~~~p~~~iivlt~~~~~~ 90 (207)
T PRK15411 47 RPSVVFIN-EDCFIHDASNSQRIKQIINQHPNTLFIVFMAIANIH 90 (207)
T ss_pred CCCEEEEe-CcccCCCCChHHHHHHHHHHCCCCeEEEEECCCchh
Confidence 34899998 22 44444445666666654443477777665543
No 345
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=22.06 E-value=2.2e+02 Score=18.40 Aligned_cols=43 Identities=19% Similarity=0.132 Sum_probs=28.7
Q ss_pred CCcEEEEecCCCCCCChHHHHHHHHhcCCCceeEEEecccCCcCCC
Q psy5946 17 QDDLHIVKDLVLPVDDPKYLENLVEERCSQVSLSARLGIRDLQYDD 62 (63)
Q Consensus 17 q~~LiIvD~l~l~~~KTk~L~~~l~~~~~~~s~LiI~g~~~~~~~~ 62 (63)
..+.+|||+...-. +.++.-++....-. .+.++....|.+|.+
T Consensus 62 ~~~~liiDE~~~~~--~g~l~~l~~~~~~~-~~~l~GDp~Q~~~~~ 104 (234)
T PF01443_consen 62 SYDTLIIDEAQLLP--PGYLLLLLSLSPAK-NVILFGDPLQIPYIS 104 (234)
T ss_pred cCCEEEEeccccCC--hHHHHHHHhhccCc-ceEEEECchhccCCc
Confidence 48999999997544 23333344444444 488888888888864
No 346
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=22.05 E-value=89 Score=28.34 Aligned_cols=41 Identities=15% Similarity=0.075 Sum_probs=26.6
Q ss_pred CCcEEEEecCC-CCCCChHHHHHHHHhcCCCceeEEEecccCCc
Q psy5946 17 QDDLHIVKDLV-LPVDDPKYLENLVEERCSQVSLSARLGIRDLQ 59 (63)
Q Consensus 17 q~~LiIvD~l~-l~~~KTk~L~~~l~~~~~~~s~LiI~g~~~~~ 59 (63)
.++++|||+.. +.......|...+... +..+++|....||+
T Consensus 930 ~~~llIVDEASMV~~~~m~~ll~~~~~~--garvVLVGD~~QL~ 971 (1623)
T PRK14712 930 SNTLFLLDESSMVGNTDMARAYALIAAG--GGRAVASGDTDQLQ 971 (1623)
T ss_pred CCcEEEEEccccccHHHHHHHHHhhhhC--CCEEEEEcchhhcC
Confidence 47899999996 4443444444444432 23599998888886
No 347
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=22.00 E-value=90 Score=27.12 Aligned_cols=42 Identities=12% Similarity=0.097 Sum_probs=29.9
Q ss_pred cCCcEEEEecCCCCCCChHHHHHHHHhcC-CCceeEEEecccCCc
Q psy5946 16 MQDDLHIVKDLVLPVDDPKYLENLVEERC-SQVSLSARLGIRDLQ 59 (63)
Q Consensus 16 ~q~~LiIvD~l~l~~~KTk~L~~~l~~~~-~~~s~LiI~g~~~~~ 59 (63)
..++++|||+... ..++.|..+++... -+-++++|+...|||
T Consensus 467 ~~~~vlVIDEAsM--v~~~~m~~Ll~~~~~~garvVLVGD~~QL~ 509 (1102)
T PRK13826 467 DNKTVFVLDEAGM--VASRQMALFVEAVTRAGAKLVLVGDPEQLQ 509 (1102)
T ss_pred CCCcEEEEECccc--CCHHHHHHHHHHHHhcCCEEEEECCHHHcC
Confidence 4578999999863 35667777776543 343588888888886
No 348
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=21.98 E-value=2.4e+02 Score=21.35 Aligned_cols=49 Identities=14% Similarity=0.103 Sum_probs=33.9
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecC--CCCCCChHHHHHHHHhc-CCCceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDL--VLPVDDPKYLENLVEER-CSQVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l--~l~~~KTk~L~~~l~~~-~~~~s~LiI~g 54 (63)
+++.|..||-. +-+++|+|+. .++..-.+.+.+.+.++ ..+..+++|..
T Consensus 410 qrl~la~al~~---~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsH 461 (510)
T PRK15439 410 QKVLIAKCLEA---SPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISS 461 (510)
T ss_pred HHHHHHHHHhh---CCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECC
Confidence 56777777754 5699999999 47777777888887775 23444555543
No 349
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=21.94 E-value=1.8e+02 Score=22.93 Aligned_cols=51 Identities=4% Similarity=-0.027 Sum_probs=35.2
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhc-CCCceeEEEecc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEER-CSQVSLSARLGI 55 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~-~~~~s~LiI~g~ 55 (63)
-|++.|..||.. +-+++++|+.. ++..-.+.+.+.++++ ..+..++++.+.
T Consensus 150 ~qrv~LAraL~~---~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~ 203 (648)
T PRK10535 150 QQRVSIARALMN---GGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHD 203 (648)
T ss_pred HHHHHHHHHHhc---CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCC
Confidence 367777777766 56999999994 6666667777888775 345445665443
No 350
>KOG2978|consensus
Probab=21.91 E-value=2.2e+02 Score=20.82 Aligned_cols=50 Identities=22% Similarity=0.379 Sum_probs=36.5
Q ss_pred hhhhHHHHh--hhhcCCcEEEEecCCCCCCChHHHHHHHHhcCCCceeEEEecc
Q psy5946 4 VLGLTSTLS--IKLMQDDLHIVKDLVLPVDDPKYLENLVEERCSQVSLSARLGI 55 (63)
Q Consensus 4 ~lGLk~ALS--~K~~q~~LiIvD~l~l~~~KTk~L~~~l~~~~~~~s~LiI~g~ 55 (63)
++||-+|-. -|++.++.+|+=|.+++- .|+++-+.++...=+ +.=||.|.
T Consensus 73 klGLgtAy~hgl~~a~g~fiviMDaDlsH-hPk~ipe~i~lq~~~-~~div~GT 124 (238)
T KOG2978|consen 73 KLGLGTAYIHGLKHATGDFIVIMDADLSH-HPKFIPEFIRLQKEG-NYDIVLGT 124 (238)
T ss_pred cccchHHHHhhhhhccCCeEEEEeCccCC-CchhHHHHHHHhhcc-Ccceeeee
Confidence 567766654 478999999999999875 788888888865444 24555554
No 351
>PRK08181 transposase; Validated
Probab=21.88 E-value=1.4e+02 Score=21.26 Aligned_cols=39 Identities=28% Similarity=0.258 Sum_probs=25.0
Q ss_pred hhcCCcEEEEecCCCCCCChH---HHHHHHHhcCCCceeEEEe
Q psy5946 14 KLMQDDLHIVKDLVLPVDDPK---YLENLVEERCSQVSLSARL 53 (63)
Q Consensus 14 K~~q~~LiIvD~l~l~~~KTk---~L~~~l~~~~~~~s~LiI~ 53 (63)
++..-+|+|+||+........ .|-+++..+-=. ..+||.
T Consensus 164 ~l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~-~s~IiT 205 (269)
T PRK08181 164 KLDKFDLLILDDLAYVTKDQAETSVLFELISARYER-RSILIT 205 (269)
T ss_pred HHhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhC-CCEEEE
Confidence 456779999999975544433 466777765323 355554
No 352
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=21.87 E-value=2.2e+02 Score=18.13 Aligned_cols=36 Identities=8% Similarity=-0.009 Sum_probs=25.0
Q ss_pred EEEEecCCCCCCChHHHHHHHHhc-CCC-ceeEEEecc
Q psy5946 20 LHIVKDLVLPVDDPKYLENLVEER-CSQ-VSLSARLGI 55 (63)
Q Consensus 20 LiIvD~l~l~~~KTk~L~~~l~~~-~~~-~s~LiI~g~ 55 (63)
.+.-++.....|++..+...++.+ |.. ..+++|+.+
T Consensus 142 i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~v~igD~ 179 (224)
T TIGR02254 142 IFVSEDAGIQKPDKEIFNYALERMPKFSKEEVLMIGDS 179 (224)
T ss_pred EEEcCccCCCCCCHHHHHHHHHHhcCCCchheEEECCC
Confidence 333455556678888889999988 876 358888543
No 353
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=21.85 E-value=47 Score=20.46 Aligned_cols=38 Identities=16% Similarity=0.065 Sum_probs=16.4
Q ss_pred hhHHHHhhhhcC-C-cEEEEecCCCCCCC-hHHHHHHHHhc
Q psy5946 6 GLTSTLSIKLMQ-D-DLHIVKDLVLPVDD-PKYLENLVEER 43 (63)
Q Consensus 6 GLk~ALS~K~~q-~-~LiIvD~l~l~~~K-Tk~L~~~l~~~ 43 (63)
.++.+++.-.+. . =++++|+++.-.+. ...|..++..+
T Consensus 137 ~l~~~l~~~~~~~~~~vlviDd~d~~~~~~~~~l~~l~~~~ 177 (185)
T PF13191_consen 137 LLREILRELAARRKPLVLVIDDLDWADPASLDLLRALARRL 177 (185)
T ss_dssp HHHHHHTTS-SE---EEEEEETTTHHHTTHHHHHHH-----
T ss_pred HHHHHHHHHHhCCCeEEEEEeCCCCCCcHHHHHHHhccccc
Confidence 344444433333 3 57788999743333 33444444433
No 354
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=21.68 E-value=2.6e+02 Score=18.62 Aligned_cols=39 Identities=15% Similarity=0.145 Sum_probs=29.0
Q ss_pred CCcEEEEecCCC----CCCChHHHHHHHHhcCCCceeEEEeccc
Q psy5946 17 QDDLHIVKDLVL----PVDDPKYLENLVEERCSQVSLSARLGIR 56 (63)
Q Consensus 17 q~~LiIvD~l~l----~~~KTk~L~~~l~~~~~~~s~LiI~g~~ 56 (63)
+-||+|+|++.. .--....+.+.++++-=+ --+|+.|.+
T Consensus 95 ~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~-~evIlTGr~ 137 (159)
T cd00561 95 EYDLVILDEINYALGYGLLDVEEVVDLLKAKPED-LELVLTGRN 137 (159)
T ss_pred CCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCC-CEEEEECCC
Confidence 559999999953 345788899999987554 367777754
No 355
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=21.61 E-value=2e+02 Score=19.83 Aligned_cols=50 Identities=10% Similarity=0.112 Sum_probs=31.8
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC-CCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC-SQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~~~s~LiI~g 54 (63)
-++++|..||-. +-+++++|+.. ++..-...+.+.+..+. -+..++++..
T Consensus 142 ~qrv~laral~~---~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH 194 (274)
T PRK13644 142 GQCVALAGILTM---EPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITH 194 (274)
T ss_pred HHHHHHHHHHHc---CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 356777777765 66999999995 44434466667776542 2334666643
No 356
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=21.61 E-value=2.4e+02 Score=21.70 Aligned_cols=49 Identities=14% Similarity=0.211 Sum_probs=32.9
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g 54 (63)
++++|.-||- ++.+++|+|+.. ++..-.+.+.+.+.++.-++.+++|.+
T Consensus 482 qRialARall---~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitH 532 (574)
T PRK11160 482 RRLGIARALL---HDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITH 532 (574)
T ss_pred HHHHHHHHHh---cCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEec
Confidence 4566777765 477999999994 655555667777777644544555543
No 357
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=21.58 E-value=2.3e+02 Score=21.23 Aligned_cols=47 Identities=15% Similarity=0.106 Sum_probs=30.5
Q ss_pred hhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEe
Q psy5946 4 VLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARL 53 (63)
Q Consensus 4 ~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~ 53 (63)
+++|.-|| +++.+++|+|+.. ++..-.+.+.+.+.++.-+..+++|.
T Consensus 478 RiaiARal---l~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiIt 526 (529)
T TIGR02868 478 RLALARAL---LADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVIT 526 (529)
T ss_pred HHHHHHHH---hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 45555555 4678999999995 66655566667777654454455553
No 358
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=21.55 E-value=1.9e+02 Score=20.73 Aligned_cols=49 Identities=6% Similarity=0.038 Sum_probs=32.9
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC--CCceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC--SQVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~--~~~s~LiI~g 54 (63)
++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++. .+..+++|..
T Consensus 107 qRvalaraL~~---~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTH 159 (325)
T TIGR01187 107 QRVALARALVF---KPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTH 159 (325)
T ss_pred HHHHHHHHHHh---CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 56777777754 66999999984 66555666777776642 2434666654
No 359
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=21.51 E-value=93 Score=24.78 Aligned_cols=50 Identities=14% Similarity=0.094 Sum_probs=39.6
Q ss_pred ChhhhhhHHHHhhhhcCCcEEEEecCCCCCCChHHHHHHHHhcCCCceeEEE
Q psy5946 1 MSIVLGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCSQVSLSAR 52 (63)
Q Consensus 1 ~vR~lGLk~ALS~K~~q~~LiIvD~l~l~~~KTk~L~~~l~~~~~~~s~LiI 52 (63)
++|+.|.--+.=.++++..+.|+|.=+---.|.+..+..+.+.|.. +++|
T Consensus 70 ii~aHG~~~~~~~~~~~~~~~viDaTCP~V~k~~~~~~~~~~~g~~--ivi~ 119 (647)
T PRK00087 70 IIRSHGVPPEVLEELKDKGLKVIDATCPFVKNIQKLAKKYYEEGYQ--IVIV 119 (647)
T ss_pred EEeCCCCCHHHHHHHHHCCCeEEECCCcCchHHHHHHHHHHhCCCE--EEEE
Confidence 3678888888888999999999998887777899888888876553 5554
No 360
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=21.50 E-value=2.5e+02 Score=21.42 Aligned_cols=51 Identities=10% Similarity=0.186 Sum_probs=36.2
Q ss_pred hhhhhHHHHhh---hhcCCcEEEEecCCCCCCChHHHHHHHHhcCCCceeEEEec
Q psy5946 3 IVLGLTSTLSI---KLMQDDLHIVKDLVLPVDDPKYLENLVEERCSQVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~---K~~q~~LiIvD~l~l~~~KTk~L~~~l~~~~~~~s~LiI~g 54 (63)
|..+++..++. .++..+++||||.-..-.--+...+.|++-|... +-+...
T Consensus 321 R~~~v~~k~~~~~~~~~gk~v~lvDD~ittG~T~~~~~~~l~~~ga~~-v~~~~~ 374 (442)
T TIGR01134 321 RELSVRLKLNPIREVFRGKRVVLVDDSIVRGTTSRQIVKMLRDAGAKE-VHVRIA 374 (442)
T ss_pred HHHHHhhhcccccccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcE-EEEEEc
Confidence 55566666643 2455589999999777777788888999888874 555554
No 361
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=21.49 E-value=2.1e+02 Score=18.11 Aligned_cols=35 Identities=6% Similarity=-0.106 Sum_probs=23.9
Q ss_pred EEEEecCCCCCCChHHHHHHHHhcCCC-ceeEEEec
Q psy5946 20 LHIVKDLVLPVDDPKYLENLVEERCSQ-VSLSARLG 54 (63)
Q Consensus 20 LiIvD~l~l~~~KTk~L~~~l~~~~~~-~s~LiI~g 54 (63)
++.-++.....|++..+...++++|.. ..+++|+.
T Consensus 138 i~~s~~~~~~KP~~~~~~~~~~~~~~~p~~~~~vgD 173 (198)
T TIGR01428 138 VLSADAVRAYKPAPQVYQLALEALGVPPDEVLFVAS 173 (198)
T ss_pred eEehhhcCCCCCCHHHHHHHHHHhCCChhhEEEEeC
Confidence 344455556677788888888888876 35777753
No 362
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=21.36 E-value=2e+02 Score=17.33 Aligned_cols=42 Identities=10% Similarity=0.101 Sum_probs=32.5
Q ss_pred hhcCCcEEEEecCCCCCCChHHHHHHHHhcCCCceeEEEecccC
Q psy5946 14 KLMQDDLHIVKDLVLPVDDPKYLENLVEERCSQVSLSARLGIRD 57 (63)
Q Consensus 14 K~~q~~LiIvD~l~l~~~KTk~L~~~l~~~~~~~s~LiI~g~~~ 57 (63)
...+++++|+=+..-.++.+....+.++++|.. ++.|.+..+
T Consensus 44 ~~~~~dl~I~iS~SG~t~~~~~~~~~a~~~g~~--vi~iT~~~~ 85 (120)
T cd05710 44 RLTEKSVVILASHSGNTKETVAAAKFAKEKGAT--VIGLTDDED 85 (120)
T ss_pred cCCCCcEEEEEeCCCCChHHHHHHHHHHHcCCe--EEEEECCCC
Confidence 456789999988888888888888888888764 666665544
No 363
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=21.30 E-value=3.1e+02 Score=22.50 Aligned_cols=50 Identities=16% Similarity=0.090 Sum_probs=35.0
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g 54 (63)
-|++||.-+|= ..-.++++|+.. ++-.-.+.+.+.+.+.-=++++|+|.+
T Consensus 480 ~rRLAlAR~LL---~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTH 531 (573)
T COG4987 480 RRRLALARALL---HDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTH 531 (573)
T ss_pred HHHHHHHHHHH---cCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEec
Confidence 37888888874 377999999994 555455666666666555666777754
No 364
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=21.14 E-value=2.6e+02 Score=21.64 Aligned_cols=49 Identities=8% Similarity=0.106 Sum_probs=32.7
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g 54 (63)
++++|.-||- ++-+++|+|+.. ++..-.+.+.+.+.++.-+..+++|.+
T Consensus 478 qrl~lARall---~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH 528 (585)
T TIGR01192 478 QRLAIARAIL---KNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAH 528 (585)
T ss_pred HHHHHHHHHh---cCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 4566666664 588999999995 666566677777776533444555543
No 365
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=20.98 E-value=2.4e+02 Score=18.50 Aligned_cols=50 Identities=8% Similarity=0.034 Sum_probs=31.2
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhc-CCCceeEEEecc
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEER-CSQVSLSARLGI 55 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~-~~~~s~LiI~g~ 55 (63)
|+++|..||.. +-+++++|+.. ++..-.+.+.+.+.++ .-+..++++.+.
T Consensus 144 qrv~laral~~---~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~ 196 (214)
T PRK13543 144 KRLALARLWLS---PAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHG 196 (214)
T ss_pred HHHHHHHHHhc---CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 56666666654 66899999984 5554556666777653 123346666543
No 366
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=20.98 E-value=1.9e+02 Score=25.08 Aligned_cols=54 Identities=20% Similarity=0.119 Sum_probs=42.4
Q ss_pred hhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhc-CCCceeEEEecccC
Q psy5946 4 VLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEER-CSQVSLSARLGIRD 57 (63)
Q Consensus 4 ~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~-~~~~s~LiI~g~~~ 57 (63)
++-|..=||-|.....|.|+|+.. +-..+-+.|.+.+..+ .-|++|++|.+..|
T Consensus 830 RvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLd 886 (935)
T COG0178 830 RVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLD 886 (935)
T ss_pred HHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccc
Confidence 445677799999999999999984 6666778888888775 57788999876554
No 367
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=20.93 E-value=1.9e+02 Score=16.94 Aligned_cols=41 Identities=20% Similarity=0.093 Sum_probs=29.7
Q ss_pred hcCCcEEEEecCCCCCCChHHHHHHHHhcCCCceeEEEecccC
Q psy5946 15 LMQDDLHIVKDLVLPVDDPKYLENLVEERCSQVSLSARLGIRD 57 (63)
Q Consensus 15 ~~q~~LiIvD~l~l~~~KTk~L~~~l~~~~~~~s~LiI~g~~~ 57 (63)
..+++++|+=+..-.++.+....+.++++|.. ++.|.+..+
T Consensus 44 ~~~~d~~I~iS~sG~t~e~~~~~~~a~~~g~~--vi~iT~~~~ 84 (126)
T cd05008 44 LDEDTLVIAISQSGETADTLAALRLAKEKGAK--TVAITNVVG 84 (126)
T ss_pred CCCCcEEEEEeCCcCCHHHHHHHHHHHHcCCe--EEEEECCCC
Confidence 56788988888776777777777777877764 666666544
No 368
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=20.88 E-value=2.1e+02 Score=17.71 Aligned_cols=31 Identities=10% Similarity=-0.030 Sum_probs=20.9
Q ss_pred ecCCCCCCChHHHHHHHHhcCCC-ceeEEEec
Q psy5946 24 KDLVLPVDDPKYLENLVEERCSQ-VSLSARLG 54 (63)
Q Consensus 24 D~l~l~~~KTk~L~~~l~~~~~~-~s~LiI~g 54 (63)
++...+.|++..+...++.++.. ..+++|+.
T Consensus 135 ~~~~~~kp~p~~~~~~~~~~~~~~~~~v~vgD 166 (185)
T TIGR01990 135 AEIKKGKPDPEIFLAAAEGLGVSPSECIGIED 166 (185)
T ss_pred hhcCCCCCChHHHHHHHHHcCCCHHHeEEEec
Confidence 34445667788888888888776 35777653
No 369
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=20.78 E-value=1.9e+02 Score=21.83 Aligned_cols=50 Identities=14% Similarity=0.090 Sum_probs=33.8
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC--CCceeEEEecc
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC--SQVSLSARLGI 55 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~--~~~s~LiI~g~ 55 (63)
++++|..||-. +-+++++|+.. ++..-.+.+.+.+.++. .+..++||.+.
T Consensus 171 QRv~LArAL~~---~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd 224 (400)
T PRK10070 171 QRVGLARALAI---NPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHD 224 (400)
T ss_pred HHHHHHHHHhc---CCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 56777777765 66999999984 66555667777777652 34446666543
No 370
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=20.74 E-value=1.6e+02 Score=15.92 Aligned_cols=35 Identities=11% Similarity=-0.037 Sum_probs=27.7
Q ss_pred hhhhcCCcEEEEecCCCCCCChHHHHHHHHhcCCC
Q psy5946 12 SIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCSQ 46 (63)
Q Consensus 12 S~K~~q~~LiIvD~l~l~~~KTk~L~~~l~~~~~~ 46 (63)
.....+++++|+=+..-.++.+..+.+.+++.|..
T Consensus 42 ~~~~~~~d~~i~iS~sg~t~~~~~~~~~a~~~g~~ 76 (87)
T cd04795 42 LSLLRKGDVVIALSYSGRTEELLAALEIAKELGIP 76 (87)
T ss_pred HhcCCCCCEEEEEECCCCCHHHHHHHHHHHHcCCe
Confidence 45567889999988887777888888888887754
No 371
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=20.70 E-value=2.6e+02 Score=18.61 Aligned_cols=31 Identities=26% Similarity=0.265 Sum_probs=24.7
Q ss_pred cCCcEEEEecCCCCCCChHHHHHHHHhcCCC
Q psy5946 16 MQDDLHIVKDLVLPVDDPKYLENLVEERCSQ 46 (63)
Q Consensus 16 ~q~~LiIvD~l~l~~~KTk~L~~~l~~~~~~ 46 (63)
+..+.+||||+--.-.--..+.+++++.|..
T Consensus 115 ~G~rVlIVDDllaTGgT~~a~~~Ll~~~ga~ 145 (179)
T COG0503 115 PGDRVLIVDDLLATGGTALALIELLEQAGAE 145 (179)
T ss_pred CCCEEEEEecchhcChHHHHHHHHHHHCCCE
Confidence 6788999999975555567889999988765
No 372
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=20.65 E-value=2.6e+02 Score=21.38 Aligned_cols=49 Identities=14% Similarity=0.144 Sum_probs=32.6
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g 54 (63)
++++|.-|| ++..+++|+|+.. ++..-.+.+.+.+.++..+..+++|.+
T Consensus 478 QRialARal---l~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitH 528 (588)
T PRK13657 478 QRLAIARAL---LKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAH 528 (588)
T ss_pred HHHHHHHHH---hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEe
Confidence 456666665 4578999999994 666566667777776644444566543
No 373
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=20.62 E-value=3.6e+02 Score=19.89 Aligned_cols=36 Identities=17% Similarity=0.074 Sum_probs=28.1
Q ss_pred CCcEEEEecCCCCCC---ChHHHHHHHHhcCCCceeEEEe
Q psy5946 17 QDDLHIVKDLVLPVD---DPKYLENLVEERCSQVSLSARL 53 (63)
Q Consensus 17 q~~LiIvD~l~l~~~---KTk~L~~~l~~~~~~~s~LiI~ 53 (63)
+-+++++-+...||. +..++..+++....+ ..+|||
T Consensus 145 ~~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~~-~~vVvD 183 (356)
T COG0079 145 KTKLVFLCNPNNPTGTLLPREELRALLEALPEG-GLVVID 183 (356)
T ss_pred CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCC-cEEEEe
Confidence 578999999998886 678888888876664 467765
No 374
>KOG2111|consensus
Probab=20.57 E-value=60 Score=24.94 Aligned_cols=21 Identities=19% Similarity=-0.039 Sum_probs=15.9
Q ss_pred hhhcCCcEEEEecCCCCCCCh
Q psy5946 13 IKLMQDDLHIVKDLVLPVDDP 33 (63)
Q Consensus 13 ~K~~q~~LiIvD~l~l~~~KT 33 (63)
.|+++|+++|+||.+-....+
T Consensus 70 pky~pNkviIWDD~k~~~i~e 90 (346)
T KOG2111|consen 70 PKYPPNKVIIWDDLKERCIIE 90 (346)
T ss_pred CCCCCceEEEEecccCcEEEE
Confidence 689999999999886443333
No 375
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=20.31 E-value=87 Score=19.38 Aligned_cols=18 Identities=28% Similarity=0.370 Sum_probs=9.3
Q ss_pred HHHHHHHHhcCCCceeEEE
Q psy5946 34 KYLENLVEERCSQVSLSAR 52 (63)
Q Consensus 34 k~L~~~l~~~~~~~s~LiI 52 (63)
++.+..+++.+|. ++++|
T Consensus 87 ~~~~~~~~~~~~~-~iilV 104 (155)
T PF02698_consen 87 RFSKRLLKERGWQ-SIILV 104 (155)
T ss_dssp HHHHHHHHT-SSS--EEEE
T ss_pred HHHHHHHHhhcCC-eEEEE
Confidence 4455566666664 46655
No 376
>PRK11595 DNA utilization protein GntX; Provisional
Probab=20.31 E-value=2e+02 Score=19.56 Aligned_cols=31 Identities=16% Similarity=0.177 Sum_probs=18.3
Q ss_pred cCCcEEEEecCCCCCCChHHHHHHHHhcCCC
Q psy5946 16 MQDDLHIVKDLVLPVDDPKYLENLVEERCSQ 46 (63)
Q Consensus 16 ~q~~LiIvD~l~l~~~KTk~L~~~l~~~~~~ 46 (63)
+..+.+||||.--.-.--....+.|.+.|..
T Consensus 186 ~~~~vllvDDv~tTG~Tl~~~~~~L~~~g~~ 216 (227)
T PRK11595 186 QGQHMAIVDDVVTTGSTVAEIAQLLLRNGAA 216 (227)
T ss_pred CCCEEEEEeeeecchHHHHHHHHHHHHcCCc
Confidence 3345777777754444455566666666655
No 377
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=20.26 E-value=2.3e+02 Score=21.28 Aligned_cols=49 Identities=6% Similarity=-0.014 Sum_probs=34.0
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhc-CCCceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEER-CSQVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~-~~~~s~LiI~g 54 (63)
++++|..||.. +-+++|+|+.. ++..-.+.+.+.+.++ ..+..+++|..
T Consensus 416 qrv~lAral~~---~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsH 467 (510)
T PRK09700 416 QKVLISKWLCC---CPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSS 467 (510)
T ss_pred HHHHHHHHHhc---CCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcC
Confidence 56777777764 56999999994 6666677777888764 33444566543
No 378
>PRK06835 DNA replication protein DnaC; Validated
Probab=20.09 E-value=1.8e+02 Score=21.36 Aligned_cols=41 Identities=24% Similarity=0.108 Sum_probs=25.5
Q ss_pred hhhcCCcEEEEecCCCCCCCh---HHHHHHHHhcCCCceeEEEe
Q psy5946 13 IKLMQDDLHIVKDLVLPVDDP---KYLENLVEERCSQVSLSARL 53 (63)
Q Consensus 13 ~K~~q~~LiIvD~l~l~~~KT---k~L~~~l~~~~~~~s~LiI~ 53 (63)
.++.+-+|+|+||+..+...+ ..|-+++..|--....+||.
T Consensus 242 ~~l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiT 285 (329)
T PRK06835 242 DLLINCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIIS 285 (329)
T ss_pred HHhccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 445677999999997665443 45666666653322355654
No 379
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=20.05 E-value=2.5e+02 Score=17.95 Aligned_cols=36 Identities=6% Similarity=-0.095 Sum_probs=25.4
Q ss_pred EEEEecCCCCCCChHHHHHHHHhcCCC-ceeEEEecc
Q psy5946 20 LHIVKDLVLPVDDPKYLENLVEERCSQ-VSLSARLGI 55 (63)
Q Consensus 20 LiIvD~l~l~~~KTk~L~~~l~~~~~~-~s~LiI~g~ 55 (63)
++.-++.....|++..+...++.+|.. +.+++|+.+
T Consensus 140 i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~igDs 176 (221)
T TIGR02253 140 VITSEEEGVEKPHPKIFYAALKRLGVKPEEAVMVGDR 176 (221)
T ss_pred EEEeccCCCCCCCHHHHHHHHHHcCCChhhEEEECCC
Confidence 444556666677888888899998876 347777543
No 380
>PF10652 DUF2480: Protein of unknown function (DUF2480); InterPro: IPR018914 All the members of this family are uncharacterised proteins, but the environment in which they are found on the bacterial genome suggests a function as a glucose-6-phosphate isomerase (5.3.1.9 from EC). This could not, however, be confirmed.
Probab=20.03 E-value=57 Score=22.65 Aligned_cols=34 Identities=15% Similarity=0.036 Sum_probs=24.2
Q ss_pred hhhcCCcEEEEecCC-CCC-----------------CChHHHHHHHHhcCCC
Q psy5946 13 IKLMQDDLHIVKDLV-LPV-----------------DDPKYLENLVEERCSQ 46 (63)
Q Consensus 13 ~K~~q~~LiIvD~l~-l~~-----------------~KTk~L~~~l~~~~~~ 46 (63)
-|++|..|+.+|=-+ -|+ -|-|++++.+++..|+
T Consensus 7 NkVA~S~LitfDLedyyp~g~r~~~Dik~~L~~GliLkEKdFR~~lk~~DWs 58 (167)
T PF10652_consen 7 NKVANSGLITFDLEDYYPKGERVVFDIKDWLFEGLILKEKDFREFLKEHDWS 58 (167)
T ss_pred HHHhccCceEeeHHHhCCCCcEEEEecHHHHhhhhhhhhHHHHHHHHhcCHH
Confidence 467788888776211 111 1889999999999997
No 381
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=20.02 E-value=1.3e+02 Score=19.88 Aligned_cols=30 Identities=17% Similarity=0.174 Sum_probs=16.6
Q ss_pred CCcEEEEecCCCCCCChHHHHHHHHhcCCC
Q psy5946 17 QDDLHIVKDLVLPVDDPKYLENLVEERCSQ 46 (63)
Q Consensus 17 q~~LiIvD~l~l~~~KTk~L~~~l~~~~~~ 46 (63)
..+++||||.--.-.--.+..+.|.+.|..
T Consensus 152 ~~~vllvDDV~TTGaTl~~~~~~L~~~Ga~ 181 (190)
T TIGR00201 152 GRNIVLVDDVVTTGATLHEIARLLLELGAA 181 (190)
T ss_pred CCEEEEEeeeeccHHHHHHHHHHHHHcCCC
Confidence 335666666654444455555566555544
Done!