Query psy5946
Match_columns 63
No_of_seqs 102 out of 206
Neff 4.6
Searched_HMMs 29240
Date Fri Aug 16 22:30:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5946.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5946hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ftc_D Mitochondrial ribosomal 99.5 8.9E-15 3.1E-19 98.4 6.7 54 2-55 73-126 (175)
2 1dmg_A Ribosomal protein L4; a 99.5 2.7E-14 9.3E-19 99.2 7.2 55 2-56 104-159 (225)
3 3r8s_E 50S ribosomal protein L 99.5 4.6E-14 1.6E-18 96.8 5.9 55 2-57 100-154 (201)
4 3v2d_F 50S ribosomal protein L 99.5 1.2E-13 4E-18 95.2 6.4 53 2-54 105-159 (210)
5 2zjr_C 50S ribosomal protein L 99.4 1.3E-13 4.6E-18 94.4 4.2 52 2-53 99-152 (205)
6 1vq8_C 50S ribosomal protein L 99.1 4.5E-11 1.5E-15 84.2 5.3 44 2-46 106-163 (246)
7 3bbo_G Ribosomal protein L4; l 99.1 1.2E-11 4.2E-16 89.1 1.4 54 2-57 156-213 (293)
8 3j21_D 50S ribosomal protein L 99.1 7.2E-11 2.4E-15 83.6 4.6 43 2-45 109-166 (255)
9 2zkr_c 60S ribosomal protein L 98.9 1.5E-09 5E-14 81.6 5.1 44 2-46 119-177 (421)
10 2wwb_H 60S ribosomal protein L 98.9 1E-09 3.5E-14 81.0 3.9 44 2-46 117-175 (362)
11 3iz5_D 60S ribosomal protein L 98.8 5.8E-09 2E-13 77.9 5.7 44 2-46 123-181 (405)
12 4a17_C RPL4, ribosomal protein 98.7 9.3E-09 3.2E-13 77.0 5.0 44 2-46 124-182 (410)
13 3auy_A DNA double-strand break 67.2 11 0.00039 25.9 5.1 53 5-57 291-347 (371)
14 1w36_D RECD, exodeoxyribonucle 65.3 9.3 0.00032 28.5 4.6 43 17-61 262-304 (608)
15 1e69_A Chromosome segregation 62.4 15 0.00052 24.7 5.0 53 3-55 226-281 (322)
16 4aby_A DNA repair protein RECN 60.7 7.2 0.00025 26.7 3.1 52 3-55 302-355 (415)
17 2vf7_A UVRA2, excinuclease ABC 58.3 14 0.00046 29.5 4.6 53 3-56 386-441 (842)
18 3kta_B Chromosome segregation 57.8 20 0.00069 22.7 4.7 51 3-53 71-124 (173)
19 1mv5_A LMRA, multidrug resista 57.3 25 0.00085 22.9 5.2 49 3-54 146-196 (243)
20 3e1s_A Exodeoxyribonuclease V, 56.9 15 0.00051 27.4 4.4 43 17-61 279-321 (574)
21 2ghi_A Transport protein; mult 55.2 22 0.00077 23.5 4.7 50 3-55 162-213 (260)
22 2r6f_A Excinuclease ABC subuni 52.7 22 0.00074 29.1 5.0 52 3-55 511-565 (972)
23 3upu_A ATP-dependent DNA helic 50.0 34 0.0011 24.2 5.2 44 16-61 127-170 (459)
24 2ff7_A Alpha-hemolysin translo 48.6 21 0.00074 23.4 3.8 50 3-55 152-203 (247)
25 1sgw_A Putative ABC transporte 47.9 42 0.0014 21.7 5.1 50 3-55 140-192 (214)
26 3pih_A Uvrabc system protein A 45.9 12 0.0004 30.1 2.5 53 3-55 812-867 (916)
27 2wk1_A NOVP; transferase, O-me 45.6 9.9 0.00034 26.3 1.8 44 10-53 229-272 (282)
28 3qkt_A DNA double-strand break 45.5 28 0.00095 23.6 4.1 42 16-57 271-315 (339)
29 3qnm_A Haloacid dehalogenase-l 44.7 40 0.0014 19.9 4.3 37 19-55 151-188 (240)
30 2d2e_A SUFC protein; ABC-ATPas 44.6 41 0.0014 22.0 4.7 49 3-54 150-201 (250)
31 3kbb_A Phosphorylated carbohyd 42.7 30 0.001 20.6 3.5 35 21-55 131-166 (216)
32 3fve_A DAP epimerase, diaminop 42.4 28 0.00097 24.2 3.8 38 16-53 10-50 (290)
33 2zu0_C Probable ATP-dependent 41.6 56 0.0019 21.6 5.0 49 3-54 171-222 (267)
34 2ixe_A Antigen peptide transpo 41.2 51 0.0017 21.9 4.8 49 3-54 163-215 (271)
35 1f2t_B RAD50 ABC-ATPase; DNA d 40.1 58 0.002 19.9 4.6 41 16-56 80-123 (148)
36 2yz2_A Putative ABC transporte 39.7 59 0.002 21.4 4.9 50 3-55 145-197 (266)
37 3vkw_A Replicase large subunit 39.1 66 0.0022 23.8 5.5 42 18-62 235-276 (446)
38 3e58_A Putative beta-phosphogl 39.0 48 0.0016 19.0 3.9 33 23-55 138-171 (214)
39 2qi9_C Vitamin B12 import ATP- 38.1 30 0.001 22.9 3.3 53 2-54 132-191 (249)
40 2pib_A Phosphorylated carbohyd 38.0 41 0.0014 19.4 3.5 33 23-55 133-166 (216)
41 3gfo_A Cobalt import ATP-bindi 37.8 41 0.0014 22.6 3.9 52 3-57 150-205 (275)
42 3pih_A Uvrabc system protein A 37.6 50 0.0017 26.5 4.9 52 3-55 471-525 (916)
43 3b5x_A Lipid A export ATP-bind 36.9 60 0.0021 23.8 4.9 49 3-54 487-537 (582)
44 3s6j_A Hydrolase, haloacid deh 36.5 53 0.0018 19.3 3.9 35 21-55 138-173 (233)
45 3euj_A Chromosome partition pr 35.8 18 0.00061 26.9 2.0 35 17-53 414-449 (483)
46 1ji0_A ABC transporter; ATP bi 34.7 56 0.0019 21.2 4.1 50 3-55 146-198 (240)
47 3nh6_A ATP-binding cassette SU 33.4 49 0.0017 22.7 3.8 48 3-53 197-246 (306)
48 3ddh_A Putative haloacid dehal 33.1 69 0.0023 18.6 4.0 27 29-55 156-183 (234)
49 1te2_A Putative phosphatase; s 33.0 73 0.0025 18.4 4.3 34 21-54 141-175 (226)
50 2o5v_A DNA replication and rep 33.0 70 0.0024 22.5 4.6 37 16-55 291-329 (359)
51 3ed5_A YFNB; APC60080, bacillu 32.4 76 0.0026 18.7 4.1 36 20-55 148-185 (238)
52 1g5t_A COB(I)alamin adenosyltr 32.3 63 0.0022 21.2 4.1 39 17-56 120-162 (196)
53 2pjz_A Hypothetical protein ST 32.1 95 0.0032 20.6 5.0 48 3-55 135-184 (263)
54 3um9_A Haloacid dehalogenase, 31.9 80 0.0027 18.5 4.2 35 20-54 142-177 (230)
55 2vf7_A UVRA2, excinuclease ABC 31.7 22 0.00075 28.3 1.9 53 3-55 737-792 (842)
56 2fi1_A Hydrolase, haloacid deh 31.6 69 0.0024 18.3 3.8 30 25-55 132-161 (190)
57 1g6h_A High-affinity branched- 31.3 55 0.0019 21.4 3.6 50 3-55 160-212 (257)
58 3ux8_A Excinuclease ABC, A sub 31.2 36 0.0012 25.3 3.0 53 3-55 550-605 (670)
59 3mc1_A Predicted phosphatase, 31.2 82 0.0028 18.5 4.2 36 20-55 132-168 (226)
60 2ah5_A COG0546: predicted phos 30.9 88 0.003 18.7 4.7 35 20-55 128-163 (210)
61 2ygr_A Uvrabc system protein A 30.2 33 0.0011 28.1 2.7 52 3-54 870-924 (993)
62 4ad8_A DNA repair protein RECN 30.1 26 0.00089 25.3 2.0 51 3-54 404-456 (517)
63 3qf7_A RAD50; ABC-ATPase, ATPa 29.8 81 0.0028 21.7 4.5 54 3-56 286-345 (365)
64 3b60_A Lipid A export ATP-bind 29.3 63 0.0021 23.7 4.0 49 3-54 487-537 (582)
65 4dcc_A Putative haloacid dehal 29.0 46 0.0016 20.1 2.8 35 20-54 163-198 (229)
66 2cbz_A Multidrug resistance-as 28.8 76 0.0026 20.5 4.0 49 3-54 134-187 (237)
67 4gib_A Beta-phosphoglucomutase 28.4 72 0.0024 19.8 3.7 31 24-54 164-195 (250)
68 2r6f_A Excinuclease ABC subuni 28.2 38 0.0013 27.7 2.8 53 3-55 852-907 (972)
69 1jql_B DNA polymerase III, del 28.1 97 0.0033 18.3 5.0 39 15-54 74-114 (140)
70 2om6_A Probable phosphoserine 27.7 64 0.0022 18.9 3.2 33 23-55 151-184 (235)
71 2no4_A (S)-2-haloacid dehaloge 27.6 99 0.0034 18.6 4.1 33 21-53 152-185 (240)
72 3kzx_A HAD-superfamily hydrola 27.5 1E+02 0.0034 18.3 4.6 36 20-55 149-186 (231)
73 3tif_A Uncharacterized ABC tra 27.2 58 0.002 21.0 3.2 50 3-55 152-205 (235)
74 3ozx_A RNAse L inhibitor; ATP 27.1 92 0.0032 23.0 4.6 49 3-54 145-195 (538)
75 1x92_A APC5045, phosphoheptose 27.0 1.1E+02 0.0038 18.6 4.5 42 13-56 109-150 (199)
76 2yl4_A ATP-binding cassette SU 26.6 70 0.0024 23.5 3.8 49 3-54 490-540 (595)
77 2nyv_A Pgpase, PGP, phosphogly 26.1 95 0.0032 18.7 3.9 31 24-54 133-164 (222)
78 4a8j_B Elongator complex prote 25.9 71 0.0024 22.7 3.6 41 16-59 99-140 (270)
79 4ex6_A ALNB; modified rossman 25.8 74 0.0025 18.9 3.3 32 24-55 154-186 (237)
80 1m3s_A Hypothetical protein YC 25.6 1.1E+02 0.0039 18.2 4.2 40 15-56 77-116 (186)
81 2hoq_A Putative HAD-hydrolase 25.4 1.1E+02 0.0037 18.5 4.0 33 23-55 143-176 (241)
82 3l8h_A Putative haloacid dehal 25.3 87 0.003 18.2 3.5 32 24-55 95-127 (179)
83 1w1w_A Structural maintenance 25.3 92 0.0031 21.6 4.1 38 17-54 355-395 (430)
84 3ec2_A DNA replication protein 25.3 59 0.002 19.3 2.7 40 13-53 96-139 (180)
85 2wf7_A Beta-PGM, beta-phosphog 25.2 1E+02 0.0036 17.8 3.8 32 24-55 139-171 (221)
86 2nq2_C Hypothetical ABC transp 25.1 65 0.0022 21.2 3.1 49 3-54 135-187 (253)
87 3dv9_A Beta-phosphoglucomutase 25.1 95 0.0033 18.4 3.7 32 24-55 159-191 (247)
88 3qxg_A Inorganic pyrophosphata 25.0 99 0.0034 18.6 3.8 32 24-55 160-192 (243)
89 2pcj_A ABC transporter, lipopr 24.9 70 0.0024 20.4 3.2 49 3-54 147-198 (224)
90 2pr7_A Haloacid dehalogenase/e 24.9 82 0.0028 17.0 3.2 30 26-55 70-100 (137)
91 2i2w_A Phosphoheptose isomeras 24.5 1.3E+02 0.0045 18.7 4.8 43 12-56 126-168 (212)
92 3umb_A Dehalogenase-like hydro 24.5 95 0.0032 18.3 3.6 33 22-54 147-180 (233)
93 2xhz_A KDSD, YRBH, arabinose 5 24.4 1.2E+02 0.004 18.0 4.2 41 14-56 93-133 (183)
94 2fdr_A Conserved hypothetical 24.3 73 0.0025 18.7 3.0 36 20-55 131-169 (229)
95 1qq5_A Protein (L-2-haloacid d 24.2 1.1E+02 0.0038 18.7 4.0 34 20-53 137-171 (253)
96 4eek_A Beta-phosphoglucomutase 24.0 97 0.0033 18.8 3.6 33 23-55 160-194 (259)
97 3m1y_A Phosphoserine phosphata 23.8 86 0.0029 18.3 3.3 30 26-55 137-167 (217)
98 2yva_A DNAA initiator-associat 23.6 1.3E+02 0.0044 18.1 4.5 41 13-55 105-145 (196)
99 2ygr_A Uvrabc system protein A 23.4 59 0.002 26.6 3.1 52 3-55 528-582 (993)
100 1tk9_A Phosphoheptose isomeras 23.4 1.3E+02 0.0043 18.0 4.3 42 13-56 106-147 (188)
101 2l8b_A Protein TRAI, DNA helic 23.1 46 0.0016 22.3 2.1 40 16-57 120-160 (189)
102 3vay_A HAD-superfamily hydrola 23.1 79 0.0027 18.6 3.0 30 26-55 151-181 (230)
103 1zrn_A L-2-haloacid dehalogena 22.9 1.3E+02 0.0043 17.8 4.0 30 24-53 145-175 (232)
104 2px0_A Flagellar biosynthesis 22.7 1.8E+02 0.0061 19.5 6.5 48 7-55 173-223 (296)
105 3umc_A Haloacid dehalogenase; 22.6 75 0.0026 19.0 2.9 30 25-54 168-198 (254)
106 3cio_A ETK, tyrosine-protein k 22.6 1.8E+02 0.006 19.4 6.0 39 16-56 102-143 (299)
107 1lng_A SRP19, signal recogniti 22.4 73 0.0025 18.6 2.7 22 25-46 23-44 (87)
108 2w43_A Hypothetical 2-haloalka 22.2 1.2E+02 0.0042 17.6 3.7 30 24-54 122-151 (201)
109 4a82_A Cystic fibrosis transme 21.6 1.4E+02 0.0049 21.8 4.7 49 3-54 484-534 (578)
110 1vpl_A ABC transporter, ATP-bi 21.5 90 0.0031 20.6 3.3 50 2-54 152-204 (256)
111 1b0u_A Histidine permease; ABC 21.5 91 0.0031 20.5 3.3 49 3-54 160-211 (262)
112 2npi_A Protein CLP1; CLP1-PCF1 21.4 1.2E+02 0.0042 21.9 4.2 50 2-57 241-299 (460)
113 3sho_A Transcriptional regulat 21.3 1.4E+02 0.0048 17.8 4.1 43 13-57 83-125 (187)
114 1jeo_A MJ1247, hypothetical pr 21.2 1.4E+02 0.0048 17.7 4.1 40 14-55 79-118 (180)
115 3b85_A Phosphate starvation-in 21.2 54 0.0019 20.9 2.1 46 3-54 111-156 (208)
116 3tui_C Methionine import ATP-b 21.1 1.1E+02 0.0036 21.9 3.8 50 3-55 170-223 (366)
117 3m9l_A Hydrolase, haloacid deh 21.0 1.4E+02 0.0046 17.5 3.9 28 27-54 124-152 (205)
118 2ihy_A ABC transporter, ATP-bi 21.0 1.7E+02 0.0058 19.4 4.7 50 3-55 168-222 (279)
119 2kjq_A DNAA-related protein; s 20.8 71 0.0024 19.1 2.5 40 16-55 82-123 (149)
120 3cnh_A Hydrolase family protei 20.8 1.1E+02 0.0038 17.7 3.3 32 23-54 134-166 (200)
121 4g9b_A Beta-PGM, beta-phosphog 20.6 1.3E+02 0.0044 18.6 3.8 32 24-55 143-175 (243)
122 1vim_A Hypothetical protein AF 20.4 1.5E+02 0.0051 18.3 4.0 41 14-56 86-126 (200)
123 2go7_A Hydrolase, haloacid deh 20.3 1.3E+02 0.0043 17.0 3.4 31 24-54 134-165 (207)
124 4fn5_A EF-G 1, elongation fact 20.2 1.3E+02 0.0046 22.7 4.3 44 12-56 105-148 (709)
125 2i6x_A Hydrolase, haloacid deh 20.1 88 0.003 18.2 2.8 32 24-55 144-176 (211)
No 1
>2ftc_D Mitochondrial ribosomal protein L4 isoform A, mitochondrial 39S ribosomal protein L3; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_D
Probab=99.55 E-value=8.9e-15 Score=98.43 Aligned_cols=54 Identities=41% Similarity=0.506 Sum_probs=51.3
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCCCCCCChHHHHHHHHhcCCCceeEEEecc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCSQVSLSARLGI 55 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~l~~~KTk~L~~~l~~~~~~~s~LiI~g~ 55 (63)
+|++||++|||+|+++++|+|||+|+++.+|||++.+.|++++|++++|||++.
T Consensus 73 ~rrlAl~sALs~k~~~~~lvVvd~~~~~~~KTK~~~~~l~~l~~~~~~LiV~~~ 126 (175)
T 2ftc_D 73 VRALGLKVALTVKLAQDDLHIMDSLELPTGDPQYLTELAHYRRWGDSVLLVDLT 126 (175)
T ss_pred HHHHHHHHHHHHhccCCCEEEEecccCCCCCHHHHHHHHHHCCCCCceEEEECC
Confidence 699999999999999999999999999999999999999999997679999865
No 2
>1dmg_A Ribosomal protein L4; alpha-beta, ribosome, RNA, S10 operon, gene regulation; HET: CIT; 1.70A {Thermotoga maritima} SCOP: c.22.1.1
Probab=99.52 E-value=2.7e-14 Score=99.21 Aligned_cols=55 Identities=24% Similarity=0.248 Sum_probs=51.6
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCCCCCCChHHHHHHHHhcCCC-ceeEEEeccc
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCSQ-VSLSARLGIR 56 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~l~~~KTk~L~~~l~~~~~~-~s~LiI~g~~ 56 (63)
+|++||++|||+|++++.|+|||+++++.+|||++.+.|+++||. +++|||.+.+
T Consensus 104 ~rrlAl~sALs~k~~~~~LvVvd~~~~~~~KTK~~~~~L~~l~~~~~~~LiV~~~~ 159 (225)
T 1dmg_A 104 MKKLALRSALSVKYRENKLLVLDDLKLERPKTKSLKEILQNLQLSDKKTLIVLPWK 159 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEESCCCCSSCCHHHHHHHHHHTTCTTSCEEEEECCC
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeecccCCCCHHHHHHHHHHcCCCCCCEEEEECCC
Confidence 699999999999999999999999999999999999999999985 5799998664
No 3
>3r8s_E 50S ribosomal protein L4; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_C 1p86_C 1vs8_E 1vs6_E 2aw4_E 2awb_E 1vt2_E 2i2v_E 2j28_E 2i2t_E* 2qao_E* 2qba_E* 2qbc_E* 2qbe_E 2qbg_E 2qbi_E* 2qbk_E* 2qov_E 2qox_E 2qoz_E* ...
Probab=99.48 E-value=4.6e-14 Score=96.82 Aligned_cols=55 Identities=22% Similarity=0.187 Sum_probs=51.3
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCCCCCCChHHHHHHHHhcCCCceeEEEecccC
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCSQVSLSARLGIRD 57 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~l~~~KTk~L~~~l~~~~~~~s~LiI~g~~~ 57 (63)
+|++||++|||+|+++++|+|||+++++.+|||++.+.|+++||. ++|||.+..|
T Consensus 100 ~rrlAl~sALs~k~~~~~l~Vvd~~~~~~~KTK~~~~~L~~l~~~-~~LiV~~~~~ 154 (201)
T 3r8s_E 100 MYRGALKSILSELVRQDRLIVVEKFSVEAPKTKLLAQKLKDMALE-DVLIITGELD 154 (201)
T ss_dssp HHHHHHHHHHHHHHHHTCEEECSCCCCSSSCHHHHHHHHHHHTCS-SEEEEESSCC
T ss_pred HHHHHHHHHHHHHhhcCCEEEeccccccCcCHHHHHHHHHHcCCC-ceEEEECCCc
Confidence 699999999999999999999999999999999999999999997 6999986533
No 4
>3v2d_F 50S ribosomal protein L4; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_F 2hgj_F 2hgu_F 2j03_F 2jl6_F 2jl8_F 2v47_F 2v49_F 2wdi_F 2wdj_F 2wdl_F 2wdn_F 2wh2_F 2wh4_F 2wrj_F 2wrl_F 2wro_F 2wrr_F 2x9s_F 2x9u_F ...
Probab=99.45 E-value=1.2e-13 Score=95.21 Aligned_cols=53 Identities=15% Similarity=0.065 Sum_probs=50.3
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCCCCCCChHHHHHHHHhcCCC--ceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCSQ--VSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~l~~~KTk~L~~~l~~~~~~--~s~LiI~g 54 (63)
+|++||++|||+|+++++|+|||+++++.+|||++.+.|+++|+. +++|||.+
T Consensus 105 ~rrlAl~sALs~k~~~~~l~Vvd~~~~~~~KTK~~~~~L~~lg~~~~~~~LiV~~ 159 (210)
T 3v2d_F 105 VRKKGLAMAVADRAREGKLLLVEAFAGVNGKTKEFLAWAKEAGLDGSESVLLVTG 159 (210)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEESCCTTCSSCHHHHHHHHHHTTCCSSSCEEEECS
T ss_pred HHHHHHHHHHHHHHhcCCEEEecccccCCccHHHHHHHHHHcCCCCCCceEEEeC
Confidence 699999999999999999999999999999999999999999983 57999987
No 5
>2zjr_C 50S ribosomal protein L4; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.22.1.1 PDB: 1j5a_K* 1jzy_K* 1jzz_K* 1k01_K* 1nkw_C 1sm1_C* 2zjp_C* 2zjq_C 1jzx_K 3cf5_C* 3dll_C* 3pio_C* 3pip_C* 1nwy_C* 1nwx_C* 1xbp_C* 1pnu_C 1pny_C 1vor_F 1vou_F ...
Probab=99.41 E-value=1.3e-13 Score=94.45 Aligned_cols=52 Identities=12% Similarity=0.066 Sum_probs=49.6
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCCCCCCChHHHHHHHHhcCCC--ceeEEEe
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCSQ--VSLSARL 53 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~l~~~KTk~L~~~l~~~~~~--~s~LiI~ 53 (63)
+|++||++|||+|++++.|+|||+++++.+|||++.+.|++++|. +++|||.
T Consensus 99 ~rrlAl~sALs~k~~~~~lvVvd~~~~~~~KTK~~~~~L~~l~~~~~~~~LiV~ 152 (205)
T 2zjr_C 99 VRQLGLAMAIASRQEGGKLVAVDGFDIADAKTKNFISWAKQNGLDGTEKVLLVT 152 (205)
T ss_dssp HHHHHHHHHHHHHHHTTCCBCSCCTTSCSSCSHHHHHHHHHTTCCSSSCEEEEC
T ss_pred HHHHHHHHHHHHHhhcCCEEEEeccccCCCCHHHHHHHHHHcCCCcCCCEEEEE
Confidence 699999999999999999999999999999999999999999985 5799997
No 6
>1vq8_C 50S ribosomal protein L4E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.22.1.1 PDB: 1k73_E* 1k8a_E* 1k9m_E* 1kc8_E* 1kd1_E* 1kqs_C* 1m1k_E* 1m90_E* 1n8r_E* 1nji_E* 1q7y_E* 1q81_E* 1q82_E* 1q86_E* 1qvf_C 1qvg_C 1s72_C* 1vq4_C* 1vq5_C* 1vq6_C* ...
Probab=99.14 E-value=4.5e-11 Score=84.21 Aligned_cols=44 Identities=14% Similarity=0.103 Sum_probs=41.8
Q ss_pred hhhhhhHHHHhhhhc--------------CCcEEEEecCCCCCCChHHHHHHHHhcCCC
Q psy5946 2 SIVLGLTSTLSIKLM--------------QDDLHIVKDLVLPVDDPKYLENLVEERCSQ 46 (63)
Q Consensus 2 vR~lGLk~ALS~K~~--------------q~~LiIvD~l~l~~~KTk~L~~~l~~~~~~ 46 (63)
+|++||++|||+|+. ++.|+|+|+++ +.+|||++.+.|+++||.
T Consensus 106 ~rrlAl~sALsa~~~~~lv~~rGh~~~~~e~~lvVvd~~~-~~~KTK~~~~~L~~lg~~ 163 (246)
T 1vq8_C 106 ERQLAVRSALAATADADLVADRGHEFDRDEVPVVVSDDFE-DLVKTQEVVSLLEALDVH 163 (246)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHTCCCCCSSCSEEECGGGG-GCCCHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHhhhhhhhhhcccccccccccEEEEeCcc-cCCCHHHHHHHHHhcCCc
Confidence 689999999999997 79999999999 999999999999999985
No 7
>3bbo_G Ribosomal protein L4; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.11 E-value=1.2e-11 Score=89.05 Aligned_cols=54 Identities=9% Similarity=-0.006 Sum_probs=48.3
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecC--CCCCCChHHHHHHHHhcCCC--ceeEEEecccC
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDL--VLPVDDPKYLENLVEERCSQ--VSLSARLGIRD 57 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l--~l~~~KTk~L~~~l~~~~~~--~s~LiI~g~~~ 57 (63)
+|++||++|||+|+ |+|+|||++ +++.+|||++.+.|+++||. +++|||.+..+
T Consensus 156 ~rrlAlrsALSak~--g~LvVvd~~~~~~~~~KTK~~~~~Lk~lg~~~~~k~LlV~~~~d 213 (293)
T 3bbo_G 156 ERRLALSTAIASAV--GNSFVVEEFAENFEKPKTKDFIAAMQRWGLDPAEKSLFFLMDLV 213 (293)
T ss_dssp HHHHHHHHHHHHHH--HTTCCCCCCGGGTTCCSSHHHHTTHHHHSCSSCSSSCCEECCCS
T ss_pred HHHHHHHHHHHHHc--CCEEEEecccccccCCCHHHHHHHHHHcCCcccCceEEEEcCCC
Confidence 69999999999999 899999999 89999999999999999983 46888875443
No 8
>3j21_D 50S ribosomal protein L4P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.09 E-value=7.2e-11 Score=83.59 Aligned_cols=43 Identities=21% Similarity=0.223 Sum_probs=40.3
Q ss_pred hhhhhhHHHHhhhhcCC---------------cEEEEecCCCCCCChHHHHHHHHhcCC
Q psy5946 2 SIVLGLTSTLSIKLMQD---------------DLHIVKDLVLPVDDPKYLENLVEERCS 45 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~---------------~LiIvD~l~l~~~KTk~L~~~l~~~~~ 45 (63)
+|++||++|||+|+.++ .|+|+|+|+ +.+|||++.+.|+++++
T Consensus 109 ~rrlAl~sALsa~~~~~lv~~rgh~~~~~~~~~lvVvd~~~-~~~KTK~~~~~L~~lg~ 166 (255)
T 3j21_D 109 EKRLALMSAIAATANYDLVRARGHIIDNVPQLPLIVVDDLQ-KVQKTRETREIFKKLGI 166 (255)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHTCCCSCTTCSSEEECGGGG-TCCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhhcccchhcccccccccceeEEEEeCCc-CCCChHHHHHHHHHcCC
Confidence 68999999999999988 899999998 56799999999999998
No 9
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=98.89 E-value=1.5e-09 Score=81.58 Aligned_cols=44 Identities=11% Similarity=-0.009 Sum_probs=42.0
Q ss_pred hhhhhhHHHHhhh---------------hcCCcEEEEecCCCCCCChHHHHHHHHhcCCC
Q psy5946 2 SIVLGLTSTLSIK---------------LMQDDLHIVKDLVLPVDDPKYLENLVEERCSQ 46 (63)
Q Consensus 2 vR~lGLk~ALS~K---------------~~q~~LiIvD~l~l~~~KTk~L~~~l~~~~~~ 46 (63)
+|++||++|||++ +.++.|+|+|+|+ +.+||+++.++|+++||.
T Consensus 119 ~rrlAlrSALSaka~~~LV~aRGH~i~~~~e~~LVVvD~le-~~~KTK~~v~~Lk~lgl~ 177 (421)
T 2zkr_c 119 QKRYAICSALACLSLPALVMSKGHRIEEVPELPLVVEDKVE-GYKKTKEAVLLLKKLKAW 177 (421)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHTTCCCCSCSCCSEEECGGGG-GCCCHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcccchhhhhccccccccccCCEEEEeCCc-cccChHHHHHHHHhcCCC
Confidence 6899999999999 8999999999999 999999999999999975
No 10
>2wwb_H 60S ribosomal protein L4-B; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Triticum aestivum} PDB: 2wwa_H 2ww9_H 3izc_D 3izs_D 3o58_D 3o5h_D 3u5e_C 3u5i_C 1s1i_D 3jyw_D
Probab=98.88 E-value=1e-09 Score=81.02 Aligned_cols=44 Identities=11% Similarity=0.092 Sum_probs=42.1
Q ss_pred hhhhhhHHHHhhh---------------hcCCcEEEEecCCCCCCChHHHHHHHHhcCCC
Q psy5946 2 SIVLGLTSTLSIK---------------LMQDDLHIVKDLVLPVDDPKYLENLVEERCSQ 46 (63)
Q Consensus 2 vR~lGLk~ALS~K---------------~~q~~LiIvD~l~l~~~KTk~L~~~l~~~~~~ 46 (63)
+|++||++|||+| +.++.|+|+|++ .+.+|||++.+.|+++||.
T Consensus 117 ~rrlAl~SALsaka~~~lv~arGH~i~~~~e~~LvVvd~~-~~~~KTK~~~~~Lk~lg~~ 175 (362)
T 2wwb_H 117 EKRYATASAIAATAVASLVLARGHRVEKIPEIPLVVSTDL-ESIQKTKEAVAALKAVGAH 175 (362)
T ss_dssp HHHHHHHHHHHGGGCSTHHHHHTCCCCSCSSCSBCCCGGG-GTCCCHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHhccchhhhhhccccccccccCcEEEEecc-cccCCHHHHHHHHHhcCCC
Confidence 6899999999999 999999999999 8999999999999999985
No 11
>3iz5_D 60S ribosomal protein L4 (L4P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_D
Probab=98.80 E-value=5.8e-09 Score=77.95 Aligned_cols=44 Identities=9% Similarity=0.077 Sum_probs=39.7
Q ss_pred hhhhhhHHHHhhhhc---------------CCcEEEEecCCCCCCChHHHHHHHHhcCCC
Q psy5946 2 SIVLGLTSTLSIKLM---------------QDDLHIVKDLVLPVDDPKYLENLVEERCSQ 46 (63)
Q Consensus 2 vR~lGLk~ALS~K~~---------------q~~LiIvD~l~l~~~KTk~L~~~l~~~~~~ 46 (63)
+|++||++|||+|+. ++.|+|+|+++ +.+|||++.+.|+++|+.
T Consensus 123 ~rrlAlrSALSaka~~~lV~aRghri~~v~e~~LVV~D~~~-~~~KTK~~v~~Lk~lg~~ 181 (405)
T 3iz5_D 123 LRRVAVASALAATSVPSLVLARGHRIETVPELPLVISDSAE-SIEKTSQAIKILKQVGAY 181 (405)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHTCCCCCCSSSSEEECTTSS-SCCCHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHhcchhhhhhccccccccccCCEEEEecCc-ccCChHHHHHHHHHcCCc
Confidence 689999999999976 78888888887 788999999999999975
No 12
>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_C 4a1c_C 4a1e_C
Probab=98.74 E-value=9.3e-09 Score=77.02 Aligned_cols=44 Identities=5% Similarity=0.005 Sum_probs=39.8
Q ss_pred hhhhhhHHHHhhhhc---------------CCcEEEEecCCCCCCChHHHHHHHHhcCCC
Q psy5946 2 SIVLGLTSTLSIKLM---------------QDDLHIVKDLVLPVDDPKYLENLVEERCSQ 46 (63)
Q Consensus 2 vR~lGLk~ALS~K~~---------------q~~LiIvD~l~l~~~KTk~L~~~l~~~~~~ 46 (63)
+|++||++|||+|+. ++.|+|+|+++ ..+|||++.+.|+++|+.
T Consensus 124 ~rrlAlrSALSaka~~~lV~aRgh~i~~v~e~~LVV~D~~e-~~~KTK~~v~~Lk~lg~~ 182 (410)
T 4a17_C 124 QKRHAVAAALAASALVPLVFARGHRISNVQELPYVFDDSVE-SYEKTKQAVAFLKRVGAY 182 (410)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHTTCCCTTCCSSSEEECTTGG-GCCSHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHhcchhhhhhccccccccCcCCEEEEecCc-CCCCHHHHHHHHHHcCCc
Confidence 689999999999974 88899999998 558999999999999974
No 13
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=67.24 E-value=11 Score=25.90 Aligned_cols=53 Identities=15% Similarity=0.096 Sum_probs=32.5
Q ss_pred hhhHHHHhhhh-cC-CcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEecccC
Q psy5946 5 LGLTSTLSIKL-MQ-DDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLGIRD 57 (63)
Q Consensus 5 lGLk~ALS~K~-~q-~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g~~~ 57 (63)
++|+.|+..=+ .+ -.++++|+.. ++..-.+.+.+.+.++.-+..++++....+
T Consensus 291 lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~ 347 (371)
T 3auy_A 291 LSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE 347 (371)
T ss_dssp HHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG
T ss_pred HHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH
Confidence 34455554322 34 5899999995 555556677788877543335777765433
No 14
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=65.25 E-value=9.3 Score=28.50 Aligned_cols=43 Identities=12% Similarity=0.071 Sum_probs=33.0
Q ss_pred CCcEEEEecCCCCCCChHHHHHHHHhcCCCceeEEEecccCCcCC
Q psy5946 17 QDDLHIVKDLVLPVDDPKYLENLVEERCSQVSLSARLGIRDLQYD 61 (63)
Q Consensus 17 q~~LiIvD~l~l~~~KTk~L~~~l~~~~~~~s~LiI~g~~~~~~~ 61 (63)
..+++|||++..- ....+..+++.+.-+..++++...+||++-
T Consensus 262 ~~d~lIIDEAsml--~~~~~~~Ll~~l~~~~~liLvGD~~QL~~V 304 (608)
T 1w36_D 262 HLDVLVVDEASMI--DLPMMSRLIDALPDHARVIFLGDRDQLASV 304 (608)
T ss_dssp SCSEEEECSGGGC--BHHHHHHHHHTCCTTCEEEEEECTTSGGGT
T ss_pred CCCEEEEechhhC--CHHHHHHHHHhCCCCCEEEEEcchhhcCCC
Confidence 5679999999732 366777888877666568999989999863
No 15
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=62.40 E-value=15 Score=24.67 Aligned_cols=53 Identities=9% Similarity=0.212 Sum_probs=33.4
Q ss_pred hhhhhHHHHhh-hhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEecc
Q psy5946 3 IVLGLTSTLSI-KLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLGI 55 (63)
Q Consensus 3 R~lGLk~ALS~-K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g~ 55 (63)
++++|..||.. .+...+++++|+.. ++....+.+.+.+.++.-+..++++...
T Consensus 226 q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~ 281 (322)
T 1e69_A 226 ALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHN 281 (322)
T ss_dssp HHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCC
T ss_pred HHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 45556666542 22456899999985 6555667788888876334346665543
No 16
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=60.71 E-value=7.2 Score=26.68 Aligned_cols=52 Identities=2% Similarity=-0.081 Sum_probs=33.7
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEecc
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLGI 55 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g~ 55 (63)
+++.|..||-..... +++|+|+.. ++..-...+.+.+.++.-+..+++|...
T Consensus 302 qrl~lA~~l~~~~~~-~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~ 355 (415)
T 4aby_A 302 SRVMLAVSTVLGADT-PSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHL 355 (415)
T ss_dssp HHHHHHHHHHHCCSS-SEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSC
T ss_pred HHHHHHHHHHhCCCC-CEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCc
Confidence 445555566543322 999999984 6666677788888876534457776543
No 17
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=58.27 E-value=14 Score=29.46 Aligned_cols=53 Identities=19% Similarity=0.061 Sum_probs=38.7
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhc-CCCceeEEEeccc
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEER-CSQVSLSARLGIR 56 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~-~~~~s~LiI~g~~ 56 (63)
.+..|..||+.... +.++|+|+.. +.....+.|.+.+..+ .+|+++++|.+-.
T Consensus 386 QRV~LA~aL~~~p~-~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl 441 (842)
T 2vf7_A 386 QRLRLATQLYSNLF-GVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDL 441 (842)
T ss_dssp HHHHHHHHTTTCCC-SCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred HHHHHHHHHhhCCC-CeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 45677778876432 3799999984 7777888888888775 4676677776543
No 18
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=57.84 E-value=20 Score=22.65 Aligned_cols=51 Identities=12% Similarity=0.205 Sum_probs=34.5
Q ss_pred hhhhhHHHHhhh-hcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEe
Q psy5946 3 IVLGLTSTLSIK-LMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARL 53 (63)
Q Consensus 3 R~lGLk~ALS~K-~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~ 53 (63)
++++|..||... ++...++++|+.. ++..-.+.+.+.+.++.-+..+++|.
T Consensus 71 qr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivit 124 (173)
T 3kta_B 71 ALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVIT 124 (173)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEEC
T ss_pred HHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEE
Confidence 456777777765 5667899999985 55556677788888765443344443
No 19
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=57.33 E-value=25 Score=22.87 Aligned_cols=49 Identities=4% Similarity=0.060 Sum_probs=35.3
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecC--CCCCCChHHHHHHHHhcCCCceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDL--VLPVDDPKYLENLVEERCSQVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l--~l~~~KTk~L~~~l~~~~~~~s~LiI~g 54 (63)
++++|..||.. +-+++++|+. .++..-.+.+.+.+.++.-+..++++.+
T Consensus 146 qrv~lAral~~---~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH 196 (243)
T 1mv5_A 146 QRLAIARAFLR---NPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAH 196 (243)
T ss_dssp HHHHHHHHHHH---CCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECC
T ss_pred HHHHHHHHHhc---CCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeC
Confidence 56777777764 6789999999 4777777888888887643444666543
No 20
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=56.93 E-value=15 Score=27.41 Aligned_cols=43 Identities=14% Similarity=0.040 Sum_probs=32.4
Q ss_pred CCcEEEEecCCCCCCChHHHHHHHHhcCCCceeEEEecccCCcCC
Q psy5946 17 QDDLHIVKDLVLPVDDPKYLENLVEERCSQVSLSARLGIRDLQYD 61 (63)
Q Consensus 17 q~~LiIvD~l~l~~~KTk~L~~~l~~~~~~~s~LiI~g~~~~~~~ 61 (63)
..+++|||++.. -.+..+..+++.+.-+.++++|...+||++-
T Consensus 279 ~~dvlIIDEasm--l~~~~~~~Ll~~~~~~~~lilvGD~~QL~~v 321 (574)
T 3e1s_A 279 PYDLLIVDEVSM--MGDALMLSLLAAVPPGARVLLVGDTDQLPPV 321 (574)
T ss_dssp SCSEEEECCGGG--CCHHHHHHHHTTSCTTCEEEEEECTTSCCCS
T ss_pred cCCEEEEcCccC--CCHHHHHHHHHhCcCCCEEEEEecccccCCc
Confidence 458999999853 2456777777776655568899999999874
No 21
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=55.17 E-value=22 Score=23.49 Aligned_cols=50 Identities=12% Similarity=0.086 Sum_probs=34.7
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEecc
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLGI 55 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g~ 55 (63)
++++|..||-. +-+++++|+.. ++..-.+.+.+.+.++.-+..+++|.+.
T Consensus 162 qRv~lAraL~~---~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~ 213 (260)
T 2ghi_A 162 QRIAIARCLLK---DPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHR 213 (260)
T ss_dssp HHHHHHHHHHH---CCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSS
T ss_pred HHHHHHHHHHc---CCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCC
Confidence 56777777764 67999999984 6665667777888776445456666543
No 22
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=52.65 E-value=22 Score=29.07 Aligned_cols=52 Identities=13% Similarity=0.041 Sum_probs=37.5
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhc-CCCceeEEEecc
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEER-CSQVSLSARLGI 55 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~-~~~~s~LiI~g~ 55 (63)
.++.|..||.... .++++|+|+.. +....+..|.+.++++ ..|+++++|.+-
T Consensus 511 QRV~LA~aL~~~~-~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHd 565 (972)
T 2r6f_A 511 QRIRLATQIGSRL-TGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 565 (972)
T ss_dssp HHHHHHHHHTTCC-CSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCC
T ss_pred HHHHHHHHHhhCC-CCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 3566777777533 24899999984 7777888899888875 467667777543
No 23
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=49.96 E-value=34 Score=24.16 Aligned_cols=44 Identities=9% Similarity=0.046 Sum_probs=29.8
Q ss_pred cCCcEEEEecCCCCCCChHHHHHHHHhcCCCceeEEEecccCCcCC
Q psy5946 16 MQDDLHIVKDLVLPVDDPKYLENLVEERCSQVSLSARLGIRDLQYD 61 (63)
Q Consensus 16 ~q~~LiIvD~l~l~~~KTk~L~~~l~~~~~~~s~LiI~g~~~~~~~ 61 (63)
...+++|||++..- .+..+..++..+.-+.++++|+..+|++|-
T Consensus 127 ~~~~~iiiDE~~~~--~~~~~~~l~~~~~~~~~~~~vGD~~Ql~~v 170 (459)
T 3upu_A 127 AKCRVLICDEVSMY--DRKLFKILLSTIPPWCTIIGIGDNKQIRPV 170 (459)
T ss_dssp SSCSEEEESCGGGC--CHHHHHHHHHHSCTTCEEEEEECTTSCCCC
T ss_pred cCCCEEEEECchhC--CHHHHHHHHHhccCCCEEEEECCHHHcCCc
Confidence 45789999999633 245555555555534458888888888763
No 24
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=48.64 E-value=21 Score=23.40 Aligned_cols=50 Identities=8% Similarity=0.114 Sum_probs=34.1
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEecc
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLGI 55 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g~ 55 (63)
++++|..||. .+-+++++|+.. ++..-.+.+.+.+.++.-+..+++|...
T Consensus 152 qRv~iAraL~---~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~ 203 (247)
T 2ff7_A 152 QRIAIARALV---NNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHR 203 (247)
T ss_dssp HHHHHHHHHT---TCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSS
T ss_pred HHHHHHHHHh---cCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 5667777775 467899999984 6666667777888776334446666543
No 25
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=47.92 E-value=42 Score=21.67 Aligned_cols=50 Identities=14% Similarity=0.080 Sum_probs=35.4
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecC--CCCCCChHHHHHHHHhcC-CCceeEEEecc
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDL--VLPVDDPKYLENLVEERC-SQVSLSARLGI 55 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l--~l~~~KTk~L~~~l~~~~-~~~s~LiI~g~ 55 (63)
++++|..||. .+-+++++|+. .++..-.+.+.+.+.++. -+..++++...
T Consensus 140 qrv~laraL~---~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd 192 (214)
T 1sgw_A 140 RRVQLASTLL---VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE 192 (214)
T ss_dssp HHHHHHHHTT---SCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS
T ss_pred HHHHHHHHHH---hCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 5677777775 47799999999 477777778888887652 23456776543
No 26
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=45.87 E-value=12 Score=30.09 Aligned_cols=53 Identities=15% Similarity=0.075 Sum_probs=38.1
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhc-CCCceeEEEecc
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEER-CSQVSLSARLGI 55 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~-~~~~s~LiI~g~ 55 (63)
+++.|..||..+..+.+|+|+|+.. ++....+.+.+.|.++ .-|.++++|.+.
T Consensus 812 QRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~Hd 867 (916)
T 3pih_A 812 QRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHN 867 (916)
T ss_dssp HHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 4667788887766667899999984 6666777788888765 235557777543
No 27
>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}
Probab=45.57 E-value=9.9 Score=26.27 Aligned_cols=44 Identities=14% Similarity=-0.027 Sum_probs=32.1
Q ss_pred HHhhhhcCCcEEEEecCCCCCCChHHHHHHHHhcCCCceeEEEe
Q psy5946 10 TLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCSQVSLSARL 53 (63)
Q Consensus 10 ALS~K~~q~~LiIvD~l~l~~~KTk~L~~~l~~~~~~~s~LiI~ 53 (63)
++-.+++.|-++|+||...-..-++++.+.+++.++.-..+-++
T Consensus 229 ~~~p~L~pGGiIv~DD~~~~~G~~~Av~Ef~~~~~i~~~i~~~~ 272 (282)
T 2wk1_A 229 NLYPKVSVGGYVIVDDYMMCPPCKDAVDEYRAKFDIADELITID 272 (282)
T ss_dssp HHGGGEEEEEEEEESSCTTCHHHHHHHHHHHHHTTCCSCCEECS
T ss_pred HHHhhcCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCceEEEEec
Confidence 35568899999999998653446888899999888873333333
No 28
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=45.48 E-value=28 Score=23.61 Aligned_cols=42 Identities=12% Similarity=0.029 Sum_probs=26.7
Q ss_pred cCCcEEEEecCC--CCCCChHHHHHHHHhcC-CCceeEEEecccC
Q psy5946 16 MQDDLHIVKDLV--LPVDDPKYLENLVEERC-SQVSLSARLGIRD 57 (63)
Q Consensus 16 ~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~~~s~LiI~g~~~ 57 (63)
.+-+++++|+.. ++..-...+.+.+.++. -+..+++|.+..+
T Consensus 271 ~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~ 315 (339)
T 3qkt_A 271 GEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE 315 (339)
T ss_dssp TTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH
Confidence 456899999985 54445566777777642 2335777765443
No 29
>3qnm_A Haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 1.70A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0
Probab=44.68 E-value=40 Score=19.90 Aligned_cols=37 Identities=11% Similarity=0.008 Sum_probs=27.3
Q ss_pred cEEEEecCCCCCCChHHHHHHHHhcCCC-ceeEEEecc
Q psy5946 19 DLHIVKDLVLPVDDPKYLENLVEERCSQ-VSLSARLGI 55 (63)
Q Consensus 19 ~LiIvD~l~l~~~KTk~L~~~l~~~~~~-~s~LiI~g~ 55 (63)
.++..++.....||+..+...++.+|.. ..+++|+.+
T Consensus 151 ~~~~~~~~~~~kp~~~~~~~~~~~lgi~~~~~~~iGD~ 188 (240)
T 3qnm_A 151 KIILSEDLGVLKPRPEIFHFALSATQSELRESLMIGDS 188 (240)
T ss_dssp EEEEGGGTTCCTTSHHHHHHHHHHTTCCGGGEEEEESC
T ss_pred eEEEeccCCCCCCCHHHHHHHHHHcCCCcccEEEECCC
Confidence 3444455566778889999999999987 468888655
No 30
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=44.56 E-value=41 Score=21.97 Aligned_cols=49 Identities=10% Similarity=0.032 Sum_probs=34.3
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC-CCceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC-SQVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~~~s~LiI~g 54 (63)
++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++. -+..+++|.+
T Consensus 150 Qrv~iAraL~~---~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtH 201 (250)
T 2d2e_A 150 KRNEILQLLVL---EPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITH 201 (250)
T ss_dssp HHHHHHHHHHH---CCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECS
T ss_pred HHHHHHHHHHc---CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 56778888764 67999999984 66656667788888763 2444666654
No 31
>3kbb_A Phosphorylated carbohydrates phosphatase TM_1254; hydrolase, arbohydrate metabolism, COBA magnesium, manganese, metal-binding, nickel; HET: MSE GOL; 1.74A {Thermotoga maritima MSB8}
Probab=42.72 E-value=30 Score=20.64 Aligned_cols=35 Identities=9% Similarity=-0.095 Sum_probs=26.2
Q ss_pred EEEecCCCCCCChHHHHHHHHhcCCC-ceeEEEecc
Q psy5946 21 HIVKDLVLPVDDPKYLENLVEERCSQ-VSLSARLGI 55 (63)
Q Consensus 21 iIvD~l~l~~~KTk~L~~~l~~~~~~-~s~LiI~g~ 55 (63)
+.-++.....|++..+...++.+|.. ..+++|+.+
T Consensus 131 ~~~~~~~~~KP~p~~~~~a~~~lg~~p~e~l~VgDs 166 (216)
T 3kbb_A 131 VFGDQVKNGKPDPEIYLLVLERLNVVPEKVVVFEDS 166 (216)
T ss_dssp ECGGGSSSCTTSTHHHHHHHHHHTCCGGGEEEEECS
T ss_pred ccccccCCCcccHHHHHHHHHhhCCCccceEEEecC
Confidence 33455667788899999999999987 358888643
No 32
>3fve_A DAP epimerase, diaminopimelate epimerase; alpha/beta, amino-acid biosynthesis, isomerase, lysine biosy; 2.60A {Mycobacterium tuberculosis}
Probab=42.36 E-value=28 Score=24.15 Aligned_cols=38 Identities=11% Similarity=-0.033 Sum_probs=27.2
Q ss_pred cCCcEEEEecCCCCCCChHHHHHHHHhcC--CC-ceeEEEe
Q psy5946 16 MQDDLHIVKDLVLPVDDPKYLENLVEERC--SQ-VSLSARL 53 (63)
Q Consensus 16 ~q~~LiIvD~l~l~~~KTk~L~~~l~~~~--~~-~s~LiI~ 53 (63)
..||.+|+|+.+.+...+..+...+-.|. .| .-.|+|.
T Consensus 10 ~GNDFvvid~~~~~~~~~~~~~~~lcdR~~GIGaDGli~v~ 50 (290)
T 3fve_A 10 TQNDFVLLPDVDAELVLTAARVAALCDRRKGLGADGVLRVT 50 (290)
T ss_dssp SSCEEEEEECTTCCSCCCHHHHHHHHCTTTSCCCSEEEEEE
T ss_pred CCCcEEEEECCCCcCCCCHHHHHHhcccCCCCCCCEEEEEe
Confidence 47899999999766666777777777654 44 2466664
No 33
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=41.62 E-value=56 Score=21.59 Aligned_cols=49 Identities=14% Similarity=0.085 Sum_probs=34.2
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC-CCceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC-SQVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~~~s~LiI~g 54 (63)
++++|..||. .+-+++++|+.. ++..-.+.+.+.+.++. -+..+++|..
T Consensus 171 QRv~iAraL~---~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtH 222 (267)
T 2zu0_C 171 KRNDILQMAV---LEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTH 222 (267)
T ss_dssp HHHHHHHHHH---HCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECS
T ss_pred HHHHHHHHHH---hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEee
Confidence 5677777775 467999999994 66666677888888753 2444555544
No 34
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=41.21 E-value=51 Score=21.92 Aligned_cols=49 Identities=14% Similarity=0.127 Sum_probs=34.2
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCC--CceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCS--QVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~--~~s~LiI~g 54 (63)
++++|..||. .+-+++++|+.. ++..-.+.+.+.+.++.- +..+++|..
T Consensus 163 QRv~lAraL~---~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtH 215 (271)
T 2ixe_A 163 QAVALARALI---RKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQ 215 (271)
T ss_dssp HHHHHHHHHT---TCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECS
T ss_pred HHHHHHHHHh---cCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeC
Confidence 5677777775 467999999984 665566778888887632 444666543
No 35
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=40.07 E-value=58 Score=19.86 Aligned_cols=41 Identities=12% Similarity=0.007 Sum_probs=26.4
Q ss_pred cCCcEEEEecCC--CCCCChHHHHHHHHhcC-CCceeEEEeccc
Q psy5946 16 MQDDLHIVKDLV--LPVDDPKYLENLVEERC-SQVSLSARLGIR 56 (63)
Q Consensus 16 ~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~~~s~LiI~g~~ 56 (63)
.+-+++++|+.. ++..-.+.+.+.+.++. -+..+++|.+..
T Consensus 80 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~ 123 (148)
T 1f2t_B 80 GEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE 123 (148)
T ss_dssp SSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG
T ss_pred CCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH
Confidence 467999999984 55445566777777642 234466665443
No 36
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=39.69 E-value=59 Score=21.43 Aligned_cols=50 Identities=14% Similarity=0.088 Sum_probs=33.7
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC-CCceeEEEecc
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC-SQVSLSARLGI 55 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~~~s~LiI~g~ 55 (63)
++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++. -+..++++.+.
T Consensus 145 qRv~lAraL~~---~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd 197 (266)
T 2yz2_A 145 RRVAIASVIVH---EPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHD 197 (266)
T ss_dssp HHHHHHHHHTT---CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred HHHHHHHHHHc---CCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 56777777764 67999999994 66656667777777651 25446666543
No 37
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=39.08 E-value=66 Score=23.80 Aligned_cols=42 Identities=10% Similarity=0.031 Sum_probs=30.9
Q ss_pred CcEEEEecCCCCCCChHHHHHHHHhcCCCceeEEEecccCCcCCC
Q psy5946 18 DDLHIVKDLVLPVDDPKYLENLVEERCSQVSLSARLGIRDLQYDD 62 (63)
Q Consensus 18 ~~LiIvD~l~l~~~KTk~L~~~l~~~~~~~s~LiI~g~~~~~~~~ 62 (63)
.+++|||+...- .+..+..++....-. .+++++...|++|-.
T Consensus 235 ~d~liiDE~sm~--~~~~l~~l~~~~~~~-~vilvGD~~Qlp~v~ 276 (446)
T 3vkw_A 235 FKRLFIDEGLML--HTGCVNFLVEMSLCD-IAYVYGDTQQIPYIN 276 (446)
T ss_dssp CSEEEEETGGGS--CHHHHHHHHHHTTCS-EEEEEECTTSCCCCC
T ss_pred CCEEEEeCcccC--CHHHHHHHHHhCCCC-EEEEecCcccccCcc
Confidence 689999998633 355665566655554 699999999999853
No 38
>3e58_A Putative beta-phosphoglucomutase; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.86A {Streptococcus thermophilus lmg 18311}
Probab=39.02 E-value=48 Score=19.02 Aligned_cols=33 Identities=6% Similarity=-0.067 Sum_probs=24.0
Q ss_pred EecCCCCCCChHHHHHHHHhcCCC-ceeEEEecc
Q psy5946 23 VKDLVLPVDDPKYLENLVEERCSQ-VSLSARLGI 55 (63)
Q Consensus 23 vD~l~l~~~KTk~L~~~l~~~~~~-~s~LiI~g~ 55 (63)
-++.....||+..+...++.+|+. ..+++|+.+
T Consensus 138 ~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~iGD~ 171 (214)
T 3e58_A 138 GEEFKESKPNPEIYLTALKQLNVQASRALIIEDS 171 (214)
T ss_dssp GGGCSSCTTSSHHHHHHHHHHTCCGGGEEEEECS
T ss_pred cccccCCCCChHHHHHHHHHcCCChHHeEEEecc
Confidence 344455677888999999999887 357777644
No 39
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=38.11 E-value=30 Score=22.86 Aligned_cols=53 Identities=11% Similarity=0.127 Sum_probs=36.1
Q ss_pred hhhhhhHHHHhhhhcCCc----EEEEecCC--CCCCChHHHHHHHHhcC-CCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDD----LHIVKDLV--LPVDDPKYLENLVEERC-SQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~----LiIvD~l~--l~~~KTk~L~~~l~~~~-~~~s~LiI~g 54 (63)
-++++|..||..+-.+.. ++++|+.. ++..-.+.+.+.+.++. -+..++++.+
T Consensus 132 ~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtH 191 (249)
T 2qi9_C 132 WQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSH 191 (249)
T ss_dssp HHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred HHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 367888889988766333 99999984 66656667777777652 2444666643
No 40
>2pib_A Phosphorylated carbohydrates phosphatase TM_1254; 3D-structure, structural genomics, NPPSFA; HET: MSE GOL; 1.73A {Thermotoga maritima MSB8} PDB: 3kbb_A*
Probab=37.98 E-value=41 Score=19.37 Aligned_cols=33 Identities=9% Similarity=-0.091 Sum_probs=24.2
Q ss_pred EecCCCCCCChHHHHHHHHhcCCC-ceeEEEecc
Q psy5946 23 VKDLVLPVDDPKYLENLVEERCSQ-VSLSARLGI 55 (63)
Q Consensus 23 vD~l~l~~~KTk~L~~~l~~~~~~-~s~LiI~g~ 55 (63)
-++.....||+..+...++.+|.. ..+++|+.+
T Consensus 133 ~~~~~~~kp~~~~~~~~~~~~~~~~~~~i~iGD~ 166 (216)
T 2pib_A 133 GDQVKNGKPDPEIYLLVLERLNVVPEKVVVFEDS 166 (216)
T ss_dssp GGGSSSCTTSTHHHHHHHHHHTCCGGGEEEEECS
T ss_pred cccCCCCCcCcHHHHHHHHHcCCCCceEEEEeCc
Confidence 344556677888999999999887 357777644
No 41
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=37.82 E-value=41 Score=22.64 Aligned_cols=52 Identities=12% Similarity=0.077 Sum_probs=35.4
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC--CCceeEEEecccC
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC--SQVSLSARLGIRD 57 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~--~~~s~LiI~g~~~ 57 (63)
++++|..||.. +-+++|+|+.. ++..-.+.+.+.+.++. -+..+++|....+
T Consensus 150 QRv~iAraL~~---~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~ 205 (275)
T 3gfo_A 150 KRVAIAGVLVM---EPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID 205 (275)
T ss_dssp HHHHHHHHHTT---CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS
T ss_pred HHHHHHHHHHc---CCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH
Confidence 56778888864 67999999984 55555567777776642 2445777765443
No 42
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=37.64 E-value=50 Score=26.51 Aligned_cols=52 Identities=10% Similarity=0.027 Sum_probs=38.3
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC-CCceeEEEecc
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC-SQVSLSARLGI 55 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~~~s~LiI~g~ 55 (63)
++..|..||..+. ++.++|+|+.. ++....+.|.+.++++. .|+++++|.+.
T Consensus 471 QRv~LAraL~~~p-~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd 525 (916)
T 3pih_A 471 QRIRLATQIGSGL-TGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHD 525 (916)
T ss_dssp HHHHHHHHHHTTC-CSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCC
T ss_pred HHHHHHHHHhhCC-CCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 4667777887653 34799999984 77778899999999864 46667777543
No 43
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=36.86 E-value=60 Score=23.76 Aligned_cols=49 Identities=8% Similarity=0.127 Sum_probs=33.8
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g 54 (63)
++++|.-||- ++-+++++|+.. ++..-.+.+.+.+.++.-+..+++|.+
T Consensus 487 qr~~iAral~---~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH 537 (582)
T 3b5x_A 487 QRVAIARALL---RDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAH 537 (582)
T ss_pred HHHHHHHHHH---cCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEec
Confidence 4566777764 577999999994 666566677778877643555666654
No 44
>3s6j_A Hydrolase, haloacid dehalogenase-like family; structural genomics, PSI-2; 2.20A {Pseudomonas syringae PV}
Probab=36.46 E-value=53 Score=19.30 Aligned_cols=35 Identities=9% Similarity=-0.062 Sum_probs=25.1
Q ss_pred EEEecCCCCCCChHHHHHHHHhcCCC-ceeEEEecc
Q psy5946 21 HIVKDLVLPVDDPKYLENLVEERCSQ-VSLSARLGI 55 (63)
Q Consensus 21 iIvD~l~l~~~KTk~L~~~l~~~~~~-~s~LiI~g~ 55 (63)
+..++.....||+..+...++.+|.. ..+++|+.+
T Consensus 138 ~~~~~~~~~kp~~~~~~~~~~~l~~~~~~~i~iGD~ 173 (233)
T 3s6j_A 138 VTRDDVSYGKPDPDLFLAAAKKIGAPIDECLVIGDA 173 (233)
T ss_dssp ECGGGSSCCTTSTHHHHHHHHHTTCCGGGEEEEESS
T ss_pred eccccCCCCCCChHHHHHHHHHhCCCHHHEEEEeCC
Confidence 33445556778899999999999887 357777643
No 45
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=35.82 E-value=18 Score=26.92 Aligned_cols=35 Identities=20% Similarity=0.010 Sum_probs=28.1
Q ss_pred CCcEEEEecC-CCCCCChHHHHHHHHhcCCCceeEEEe
Q psy5946 17 QDDLHIVKDL-VLPVDDPKYLENLVEERCSQVSLSARL 53 (63)
Q Consensus 17 q~~LiIvD~l-~l~~~KTk~L~~~l~~~~~~~s~LiI~ 53 (63)
.=.|+|+|++ ..+..++++..++++++|++ ++|+.
T Consensus 414 ~~rlvvlDEA~kmD~~~~~~~~~l~~~lglQ--liiat 449 (483)
T 3euj_A 414 PCRLLFLDQAARLDAMSINTLFELCERLDMQ--LLIAA 449 (483)
T ss_dssp CCCEEEESSGGGSCHHHHHHHHHHHHHTTCE--EEEEE
T ss_pred ceeEEEEeccccCCHHHHHHHHHHHHHcCCE--EEEEC
Confidence 3468999999 46777899999999999997 66553
No 46
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=34.66 E-value=56 Score=21.16 Aligned_cols=50 Identities=8% Similarity=-0.003 Sum_probs=33.8
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC-CCceeEEEecc
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC-SQVSLSARLGI 55 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~~~s~LiI~g~ 55 (63)
++++|..||. .+-+++++|+.. ++..-.+.+.+.+.++. -+..++++.+.
T Consensus 146 qrv~lAraL~---~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd 198 (240)
T 1ji0_A 146 QMLAIGRALM---SRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQN 198 (240)
T ss_dssp HHHHHHHHHT---TCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred HHHHHHHHHH---cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 5677777775 467999999994 65555666777777642 24446666543
No 47
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=33.37 E-value=49 Score=22.74 Aligned_cols=48 Identities=6% Similarity=0.179 Sum_probs=32.1
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEe
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARL 53 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~ 53 (63)
++++|.-||- .+-+++|+|+.. ++..-.+.+.+.+.++.-+..+++|.
T Consensus 197 QRvaiARAL~---~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~it 246 (306)
T 3nh6_A 197 QRVAIARTIL---KAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVA 246 (306)
T ss_dssp HHHHHHHHHH---HCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHH---hCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 4567777775 467999999984 55555566777777754444566654
No 48
>3ddh_A Putative haloacid dehalogenase-like family hydrol; hydrolase, HAD superfamily, ST genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron}
Probab=33.09 E-value=69 Score=18.62 Aligned_cols=27 Identities=11% Similarity=-0.184 Sum_probs=22.2
Q ss_pred CCCChHHHHHHHHhcCCC-ceeEEEecc
Q psy5946 29 PVDDPKYLENLVEERCSQ-VSLSARLGI 55 (63)
Q Consensus 29 ~~~KTk~L~~~l~~~~~~-~s~LiI~g~ 55 (63)
+.||+..+...++.+|.. ..+++|+.+
T Consensus 156 ~kpk~~~~~~~~~~lgi~~~~~i~iGD~ 183 (234)
T 3ddh_A 156 SDKTEKEYLRLLSILQIAPSELLMVGNS 183 (234)
T ss_dssp SCCSHHHHHHHHHHHTCCGGGEEEEESC
T ss_pred CCCCHHHHHHHHHHhCCCcceEEEECCC
Confidence 568999999999999987 458888765
No 49
>1te2_A Putative phosphatase; structural genomics, phosphates, PSI, protein S initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Escherichia coli} SCOP: c.108.1.6
Probab=33.04 E-value=73 Score=18.44 Aligned_cols=34 Identities=9% Similarity=0.012 Sum_probs=23.3
Q ss_pred EEEecCCCCCCChHHHHHHHHhcCCC-ceeEEEec
Q psy5946 21 HIVKDLVLPVDDPKYLENLVEERCSQ-VSLSARLG 54 (63)
Q Consensus 21 iIvD~l~l~~~KTk~L~~~l~~~~~~-~s~LiI~g 54 (63)
+..++.....|++..+...++.+|+. ..+++|+.
T Consensus 141 ~~~~~~~~~kp~~~~~~~~~~~~~i~~~~~i~iGD 175 (226)
T 1te2_A 141 ASAEKLPYSKPHPQVYLDCAAKLGVDPLTCVALED 175 (226)
T ss_dssp EECTTSSCCTTSTHHHHHHHHHHTSCGGGEEEEES
T ss_pred EeccccCCCCCChHHHHHHHHHcCCCHHHeEEEeC
Confidence 33344555566788999999998877 35677653
No 50
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=32.95 E-value=70 Score=22.45 Aligned_cols=37 Identities=16% Similarity=0.108 Sum_probs=27.0
Q ss_pred cCCcEEEEecC--CCCCCChHHHHHHHHhcCCCceeEEEecc
Q psy5946 16 MQDDLHIVKDL--VLPVDDPKYLENLVEERCSQVSLSARLGI 55 (63)
Q Consensus 16 ~q~~LiIvD~l--~l~~~KTk~L~~~l~~~~~~~s~LiI~g~ 55 (63)
.+-.++++|+. +++....+.|.+.+.+++ . ++|+.-+
T Consensus 291 ~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--q-t~i~~th 329 (359)
T 2o5v_A 291 GEDPVLLLDDFTAELDPHRRQYLLDLAASVP--Q-AIVTGTE 329 (359)
T ss_dssp SSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--E-EEEEESS
T ss_pred CCCCEEEEeCccccCCHHHHHHHHHHHHhcC--c-EEEEEEe
Confidence 46789999999 577777788888888765 3 4444433
No 51
>3ed5_A YFNB; APC60080, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.72A {Bacillus subtilis} PDB: 3i76_A
Probab=32.36 E-value=76 Score=18.68 Aligned_cols=36 Identities=8% Similarity=-0.040 Sum_probs=26.3
Q ss_pred EEEEecCCCCCCChHHHHHHHHhcC-CC-ceeEEEecc
Q psy5946 20 LHIVKDLVLPVDDPKYLENLVEERC-SQ-VSLSARLGI 55 (63)
Q Consensus 20 LiIvD~l~l~~~KTk~L~~~l~~~~-~~-~s~LiI~g~ 55 (63)
.+..++.....||+..+...++.+| .. ..+++|+.+
T Consensus 148 ~~~~~~~~~~kp~~~~~~~~~~~~g~~~~~~~i~vGD~ 185 (238)
T 3ed5_A 148 IFVSEDTGFQKPMKEYFNYVFERIPQFSAEHTLIIGDS 185 (238)
T ss_dssp EEEGGGTTSCTTCHHHHHHHHHTSTTCCGGGEEEEESC
T ss_pred EEEecccCCCCCChHHHHHHHHHcCCCChhHeEEECCC
Confidence 3444555667788999999999998 76 468888655
No 52
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=32.30 E-value=63 Score=21.21 Aligned_cols=39 Identities=10% Similarity=0.028 Sum_probs=29.0
Q ss_pred CCcEEEEecCC----CCCCChHHHHHHHHhcCCCceeEEEeccc
Q psy5946 17 QDDLHIVKDLV----LPVDDPKYLENLVEERCSQVSLSARLGIR 56 (63)
Q Consensus 17 q~~LiIvD~l~----l~~~KTk~L~~~l~~~~~~~s~LiI~g~~ 56 (63)
.=||+|+|++. +.--....+.+.+.++--. .-+||.|-.
T Consensus 120 ~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~-~~vIlTGr~ 162 (196)
T 1g5t_A 120 LLDMVVLDELTYMVAYDYLPLEEVISALNARPGH-QTVIITGRG 162 (196)
T ss_dssp TCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTT-CEEEEECSS
T ss_pred CCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCC-CEEEEECCC
Confidence 45999999994 3556777888999987655 477777754
No 53
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=32.07 E-value=95 Score=20.61 Aligned_cols=48 Identities=6% Similarity=0.027 Sum_probs=33.9
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEecc
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLGI 55 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g~ 55 (63)
++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++.- .++++.+.
T Consensus 135 qRv~lAraL~~---~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd 184 (263)
T 2pjz_A 135 VLVRTSLALAS---QPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHE 184 (263)
T ss_dssp HHHHHHHHHHT---CCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESC
T ss_pred HHHHHHHHHHh---CCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcC
Confidence 56777777765 56899999984 555556667778877532 57777654
No 54
>3um9_A Haloacid dehalogenase, type II; haloacid dehalogenase-like hydrolase protein superfamily, defluorinase, hydrolase; 2.19A {Polaromonas SP}
Probab=31.89 E-value=80 Score=18.52 Aligned_cols=35 Identities=14% Similarity=-0.045 Sum_probs=25.1
Q ss_pred EEEEecCCCCCCChHHHHHHHHhcCCC-ceeEEEec
Q psy5946 20 LHIVKDLVLPVDDPKYLENLVEERCSQ-VSLSARLG 54 (63)
Q Consensus 20 LiIvD~l~l~~~KTk~L~~~l~~~~~~-~s~LiI~g 54 (63)
.+..++.....||+..+...++.+|.. ..+++|+.
T Consensus 142 ~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~iGD 177 (230)
T 3um9_A 142 LISVDEVRLFKPHQKVYELAMDTLHLGESEILFVSC 177 (230)
T ss_dssp EEEGGGTTCCTTCHHHHHHHHHHHTCCGGGEEEEES
T ss_pred eEehhhcccCCCChHHHHHHHHHhCCCcccEEEEeC
Confidence 344445556678889999999999887 35777753
No 55
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=31.67 E-value=22 Score=28.29 Aligned_cols=53 Identities=11% Similarity=0.005 Sum_probs=34.9
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhc-CCCceeEEEecc
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEER-CSQVSLSARLGI 55 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~-~~~~s~LiI~g~ 55 (63)
+++.|..||..+-...+++|+|+.. ++....+.+.+.+.++ .-|.++++|...
T Consensus 737 QRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHd 792 (842)
T 2vf7_A 737 QRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHK 792 (842)
T ss_dssp HHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCC
Confidence 4566666666543346999999984 6555667777777765 245557777543
No 56
>2fi1_A Hydrolase, haloacid dehalogenase-like family; structural genomics, haloacid dehalogenase-like F PSI, protein structure initiative; 1.40A {Streptococcus pneumoniae} SCOP: c.108.1.3
Probab=31.61 E-value=69 Score=18.31 Aligned_cols=30 Identities=13% Similarity=-0.150 Sum_probs=21.4
Q ss_pred cCCCCCCChHHHHHHHHhcCCCceeEEEecc
Q psy5946 25 DLVLPVDDPKYLENLVEERCSQVSLSARLGI 55 (63)
Q Consensus 25 ~l~l~~~KTk~L~~~l~~~~~~~s~LiI~g~ 55 (63)
+.....||+..+...++.+|.. .+++|+.+
T Consensus 132 ~~~~~kp~~~~~~~~~~~~~~~-~~~~iGD~ 161 (190)
T 2fi1_A 132 SGFKRKPNPESMLYLREKYQIS-SGLVIGDR 161 (190)
T ss_dssp GCCCCTTSCHHHHHHHHHTTCS-SEEEEESS
T ss_pred ccCCCCCCHHHHHHHHHHcCCC-eEEEEcCC
Confidence 3445567788888888888887 67777643
No 57
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=31.32 E-value=55 Score=21.42 Aligned_cols=50 Identities=8% Similarity=0.022 Sum_probs=34.1
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC-CCceeEEEecc
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC-SQVSLSARLGI 55 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~~~s~LiI~g~ 55 (63)
++++|..||. .+-+++++|+.. ++..-.+.+.+.+.++. -+..+++|.+.
T Consensus 160 Qrv~iAraL~---~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd 212 (257)
T 1g6h_A 160 KLVEIGRALM---TNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHR 212 (257)
T ss_dssp HHHHHHHHHH---TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred HHHHHHHHHH---cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 5677777776 467899999984 66666677777777652 14446666544
No 58
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=31.23 E-value=36 Score=25.35 Aligned_cols=53 Identities=17% Similarity=0.095 Sum_probs=37.0
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC-CCceeEEEecc
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC-SQVSLSARLGI 55 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~~~s~LiI~g~ 55 (63)
++++|..||..+..+-+++++|+.. ++..-...+.+.+.++. -+.++++|...
T Consensus 550 qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd 605 (670)
T 3ux8_A 550 QRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHN 605 (670)
T ss_dssp HHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 5678888887765556899999984 65556677777777652 24457777543
No 59
>3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.93A {Clostridium acetobutylicum} SCOP: c.108.1.0
Probab=31.21 E-value=82 Score=18.47 Aligned_cols=36 Identities=3% Similarity=-0.324 Sum_probs=26.4
Q ss_pred EEEEecCCCCCCChHHHHHHHHhcCCC-ceeEEEecc
Q psy5946 20 LHIVKDLVLPVDDPKYLENLVEERCSQ-VSLSARLGI 55 (63)
Q Consensus 20 LiIvD~l~l~~~KTk~L~~~l~~~~~~-~s~LiI~g~ 55 (63)
.+..++.....||+..+...++.+|.. ..+++|+.+
T Consensus 132 ~~~~~~~~~~kp~~~~~~~~~~~lgi~~~~~i~iGD~ 168 (226)
T 3mc1_A 132 IVGSSLDGKLSTKEDVIRYAMESLNIKSDDAIMIGDR 168 (226)
T ss_dssp EEEECTTSSSCSHHHHHHHHHHHHTCCGGGEEEEESS
T ss_pred eeccCCCCCCCCCHHHHHHHHHHhCcCcccEEEECCC
Confidence 444555566778999999999999987 457777543
No 60
>2ah5_A COG0546: predicted phosphatases; MCSG, structural genomics, hydrola haloacid dehalogenase-like, PSI; 1.74A {Streptococcus pneumoniae} SCOP: c.108.1.6
Probab=30.91 E-value=88 Score=18.68 Aligned_cols=35 Identities=0% Similarity=-0.247 Sum_probs=25.1
Q ss_pred EEEEecCCCCCCChHHHHHHHHhcCCC-ceeEEEecc
Q psy5946 20 LHIVKDLVLPVDDPKYLENLVEERCSQ-VSLSARLGI 55 (63)
Q Consensus 20 LiIvD~l~l~~~KTk~L~~~l~~~~~~-~s~LiI~g~ 55 (63)
-++.-+ ....||+..+...++.+|.. ..+++|+.+
T Consensus 128 ~i~~~~-~~~Kp~p~~~~~~~~~lg~~p~~~~~vgDs 163 (210)
T 2ah5_A 128 GIYGSS-PEAPHKADVIHQALQTHQLAPEQAIIIGDT 163 (210)
T ss_dssp EEEEEC-SSCCSHHHHHHHHHHHTTCCGGGEEEEESS
T ss_pred eeecCC-CCCCCChHHHHHHHHHcCCCcccEEEECCC
Confidence 344444 55678888999999999987 357777543
No 61
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=30.19 E-value=33 Score=28.07 Aligned_cols=52 Identities=17% Similarity=0.114 Sum_probs=35.9
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhc-CCCceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEER-CSQVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~-~~~~s~LiI~g 54 (63)
+++.|..||..+-...+++|+|+.. ++....+.+.+.+.++ .-|.++++|..
T Consensus 870 QRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisH 924 (993)
T 2ygr_A 870 QRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEH 924 (993)
T ss_dssp HHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcC
Confidence 5677778887654456999999984 5555666777777765 23555777754
No 62
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=30.15 E-value=26 Score=25.25 Aligned_cols=51 Identities=2% Similarity=-0.100 Sum_probs=33.2
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g 54 (63)
++..|..||...-.. +++|+|+.. ++..-...+.+.+.++.-+..+++|.+
T Consensus 404 qrv~la~~l~~~~~~-~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH 456 (517)
T 4ad8_A 404 SRVMLAVSTVLGADT-PSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTH 456 (517)
T ss_dssp HHHHHHHHHHHCCCS-SEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECC
T ss_pred HHHHHHHHHHhCCCC-CEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 455666677665444 999999984 665556667777776532445776654
No 63
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=29.79 E-value=81 Score=21.75 Aligned_cols=54 Identities=9% Similarity=0.122 Sum_probs=33.5
Q ss_pred hhhhhHHHHh-hhh--cCCcEEEEecCC--CCCCChHHHHHHHHhcC-CCceeEEEeccc
Q psy5946 3 IVLGLTSTLS-IKL--MQDDLHIVKDLV--LPVDDPKYLENLVEERC-SQVSLSARLGIR 56 (63)
Q Consensus 3 R~lGLk~ALS-~K~--~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~~~s~LiI~g~~ 56 (63)
++++|..||. +++ .+-+++++|+.. ++..-...+.+.+.++. -+..+++|.+..
T Consensus 286 qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~ 345 (365)
T 3qf7_A 286 ALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDR 345 (365)
T ss_dssp HHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCH
T ss_pred HHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecch
Confidence 3445555554 222 466899999984 55556667777777753 344577776543
No 64
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=29.35 E-value=63 Score=23.67 Aligned_cols=49 Identities=8% Similarity=0.118 Sum_probs=33.0
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g 54 (63)
++++|.-||- ++-+++++|+.. ++..-.+.+.+.+.++.-+..+++|.+
T Consensus 487 qrl~iAral~---~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH 537 (582)
T 3b60_A 487 QRIAIARALL---RDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAH 537 (582)
T ss_dssp HHHHHHHHHH---HCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECS
T ss_pred HHHHHHHHHH---hCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 4567777774 477999999994 555555667777777533555666654
No 65
>4dcc_A Putative haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 1.65A {Bacteroides thetaiotaomicron} PDB: 4dfd_A 4f71_A 4f72_A
Probab=29.04 E-value=46 Score=20.07 Aligned_cols=35 Identities=6% Similarity=0.048 Sum_probs=25.6
Q ss_pred EEEEecCCCCCCChHHHHHHHHhcCCC-ceeEEEec
Q psy5946 20 LHIVKDLVLPVDDPKYLENLVEERCSQ-VSLSARLG 54 (63)
Q Consensus 20 LiIvD~l~l~~~KTk~L~~~l~~~~~~-~s~LiI~g 54 (63)
++..++.....|++..+...++.+|+. ..+++|+.
T Consensus 163 i~~~~~~~~~KP~~~~~~~~~~~~g~~~~~~~~vGD 198 (229)
T 4dcc_A 163 TYLSYEMKMAKPEPEIFKAVTEDAGIDPKETFFIDD 198 (229)
T ss_dssp EEEHHHHTCCTTCHHHHHHHHHHHTCCGGGEEEECS
T ss_pred EEeecccCCCCCCHHHHHHHHHHcCCCHHHeEEECC
Confidence 344455566777889999999999987 45777753
No 66
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=28.80 E-value=76 Score=20.50 Aligned_cols=49 Identities=10% Similarity=-0.018 Sum_probs=29.4
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHH---hcCCCceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVE---ERCSQVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~---~~~~~~s~LiI~g 54 (63)
++++|..||.. +-+++++|+.. ++..-.+.+.+.+. ++.-+..+++|..
T Consensus 134 qRv~lAraL~~---~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH 187 (237)
T 2cbz_A 134 QRVSLARAVYS---NADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTH 187 (237)
T ss_dssp HHHHHHHHHHH---CCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECS
T ss_pred HHHHHHHHHhc---CCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEec
Confidence 56777777764 67999999985 44333455556663 2222444666643
No 67
>4gib_A Beta-phosphoglucomutase; rossmann fold, HAD-like, structural genomics, center for structural genomics of infectious DISE csgid, isomerase; 2.27A {Clostridium difficile}
Probab=28.38 E-value=72 Score=19.85 Aligned_cols=31 Identities=3% Similarity=-0.201 Sum_probs=22.8
Q ss_pred ecCCCCCCChHHHHHHHHhcCCC-ceeEEEec
Q psy5946 24 KDLVLPVDDPKYLENLVEERCSQ-VSLSARLG 54 (63)
Q Consensus 24 D~l~l~~~KTk~L~~~l~~~~~~-~s~LiI~g 54 (63)
++.....|+|..+...++++|.. +.+++|+.
T Consensus 164 ~~~~~~KP~p~~~~~a~~~lg~~p~e~l~VGD 195 (250)
T 4gib_A 164 GKCKNNKPHPEIFLMSAKGLNVNPQNCIGIED 195 (250)
T ss_dssp GGCCSCTTSSHHHHHHHHHHTCCGGGEEEEES
T ss_pred cccCCCCCcHHHHHHHHHHhCCChHHeEEECC
Confidence 44455677888899999999887 35777754
No 68
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=28.21 E-value=38 Score=27.67 Aligned_cols=53 Identities=17% Similarity=0.075 Sum_probs=36.4
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhc-CCCceeEEEecc
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEER-CSQVSLSARLGI 55 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~-~~~~s~LiI~g~ 55 (63)
+++.|..||..+-...+++|+|+.. ++....+.+.+.+.++ .-|..+++|...
T Consensus 852 QRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHd 907 (972)
T 2r6f_A 852 QRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHN 907 (972)
T ss_dssp HHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCC
Confidence 5677888887755556999999984 5555666677777765 235557777543
No 69
>1jql_B DNA polymerase III, delta subunit; processivity clamp, clamp loader, DNA replication, AAA+ ATPase, transferase; HET: DNA; 2.50A {Escherichia coli} SCOP: c.37.1.20
Probab=28.09 E-value=97 Score=18.29 Aligned_cols=39 Identities=10% Similarity=-0.123 Sum_probs=25.5
Q ss_pred hcCCcEEEEecCCC--CCCChHHHHHHHHhcCCCceeEEEec
Q psy5946 15 LMQDDLHIVKDLVL--PVDDPKYLENLVEERCSQVSLSARLG 54 (63)
Q Consensus 15 ~~q~~LiIvD~l~l--~~~KTk~L~~~l~~~~~~~s~LiI~g 54 (63)
+++.++|+|.+..- ...-.+.|.+.+++..-+ .+|||.+
T Consensus 74 F~~rrlV~v~~~~~~~~~~~~~~L~~yl~~p~~~-~~lvi~~ 114 (140)
T 1jql_B 74 FASRQTLLLLLPENGPNAAINEQLLTLTGLLHDD-LLLIVRG 114 (140)
T ss_dssp TCCCEEEEEECCTTCSCTTHHHHHHHHHHHCCSS-CCEEEEC
T ss_pred CCCCEEEEEECCCCCCChHHHHHHHHHHhcCCCC-EEEEEEe
Confidence 56778999987642 233346788888865544 5777765
No 70
>2om6_A Probable phosphoserine phosphatase; rossmann fold, B-hairpin, four-helix bundle, structural GENO NPPSFA; 2.20A {Pyrococcus horikoshii}
Probab=27.70 E-value=64 Score=18.91 Aligned_cols=33 Identities=3% Similarity=-0.090 Sum_probs=25.3
Q ss_pred EecCCCCCCChHHHHHHHHhcCCC-ceeEEEecc
Q psy5946 23 VKDLVLPVDDPKYLENLVEERCSQ-VSLSARLGI 55 (63)
Q Consensus 23 vD~l~l~~~KTk~L~~~l~~~~~~-~s~LiI~g~ 55 (63)
-++.....|++..+...++.+|.. ..+++|+.+
T Consensus 151 ~~~~~~~kp~~~~~~~~~~~lgi~~~~~~~iGD~ 184 (235)
T 2om6_A 151 ADEVLSYKPRKEMFEKVLNSFEVKPEESLHIGDT 184 (235)
T ss_dssp HHHHTCCTTCHHHHHHHHHHTTCCGGGEEEEESC
T ss_pred ccccCCCCCCHHHHHHHHHHcCCCccceEEECCC
Confidence 355566778899999999999987 468888654
No 71
>2no4_A (S)-2-haloacid dehalogenase IVA; HAD superfamily, rossman fold, hydrol; 1.93A {Burkholderia cepacia} PDB: 2no5_A*
Probab=27.64 E-value=99 Score=18.56 Aligned_cols=33 Identities=12% Similarity=0.053 Sum_probs=23.4
Q ss_pred EEEecCCCCCCChHHHHHHHHhcCCC-ceeEEEe
Q psy5946 21 HIVKDLVLPVDDPKYLENLVEERCSQ-VSLSARL 53 (63)
Q Consensus 21 iIvD~l~l~~~KTk~L~~~l~~~~~~-~s~LiI~ 53 (63)
+..++.....|++..+...++.+|.. ..+++|+
T Consensus 152 ~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~iG 185 (240)
T 2no4_A 152 LSADDLKIYKPDPRIYQFACDRLGVNPNEVCFVS 185 (240)
T ss_dssp EEGGGTTCCTTSHHHHHHHHHHHTCCGGGEEEEE
T ss_pred EEccccCCCCCCHHHHHHHHHHcCCCcccEEEEe
Confidence 33355556677888899899998876 3577775
No 72
>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 1.90A {Ehrlichia chaffeensis}
Probab=27.49 E-value=1e+02 Score=18.27 Aligned_cols=36 Identities=6% Similarity=-0.215 Sum_probs=25.7
Q ss_pred EEEEecCCCCCCChHHHHHHHHhcCCCc--eeEEEecc
Q psy5946 20 LHIVKDLVLPVDDPKYLENLVEERCSQV--SLSARLGI 55 (63)
Q Consensus 20 LiIvD~l~l~~~KTk~L~~~l~~~~~~~--s~LiI~g~ 55 (63)
++.-++.....||+..+...++.+|..+ .+++|+.+
T Consensus 149 i~~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~~v~vGD~ 186 (231)
T 3kzx_A 149 IIGSGDTGTIKPSPEPVLAALTNINIEPSKEVFFIGDS 186 (231)
T ss_dssp EEEETSSSCCTTSSHHHHHHHHHHTCCCSTTEEEEESS
T ss_pred EEcccccCCCCCChHHHHHHHHHcCCCcccCEEEEcCC
Confidence 3444555666788899999999999873 37777543
No 73
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=27.17 E-value=58 Score=21.04 Aligned_cols=50 Identities=6% Similarity=0.030 Sum_probs=34.0
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC--CCceeEEEecc
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC--SQVSLSARLGI 55 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~--~~~s~LiI~g~ 55 (63)
++++|..||.. +-+++++|+.. ++..-...+.+.+.++. .+..+++|.+.
T Consensus 152 QRv~iAral~~---~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd 205 (235)
T 3tif_A 152 QRVAIARALAN---NPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHD 205 (235)
T ss_dssp HHHHHHHHHTT---CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSC
T ss_pred HHHHHHHHHHc---CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCC
Confidence 56778888864 67999999994 55556667777777652 24346666543
No 74
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=27.14 E-value=92 Score=23.00 Aligned_cols=49 Identities=14% Similarity=0.070 Sum_probs=33.5
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g 54 (63)
++.+|..||. .+-+++|+|+.. ++..-...+.+.+.++.-+..+++|..
T Consensus 145 Qrv~iA~aL~---~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsH 195 (538)
T 3ozx_A 145 QRLLVAASLL---READVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDH 195 (538)
T ss_dssp HHHHHHHHHH---SCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECS
T ss_pred HHHHHHHHHH---cCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEe
Confidence 4567777775 467899999984 555455667888887644555666643
No 75
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=27.00 E-value=1.1e+02 Score=18.57 Aligned_cols=42 Identities=10% Similarity=-0.106 Sum_probs=31.9
Q ss_pred hhhcCCcEEEEecCCCCCCChHHHHHHHHhcCCCceeEEEeccc
Q psy5946 13 IKLMQDDLHIVKDLVLPVDDPKYLENLVEERCSQVSLSARLGIR 56 (63)
Q Consensus 13 ~K~~q~~LiIvD~l~l~~~KTk~L~~~l~~~~~~~s~LiI~g~~ 56 (63)
.....+|++|+=+..-.++.+-...+.++++|.. ++.|.+..
T Consensus 109 ~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~--vI~IT~~~ 150 (199)
T 1x92_A 109 ALGQPGDVLLAISTSGNSANVIQAIQAAHDREML--VVALTGRD 150 (199)
T ss_dssp HHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCE--EEEEECTT
T ss_pred hCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCE--EEEEECCC
Confidence 4568899999998887777788888888888775 55665543
No 76
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=26.60 E-value=70 Score=23.47 Aligned_cols=49 Identities=4% Similarity=0.112 Sum_probs=33.0
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g 54 (63)
++++|.-||- ++-+++++|+.. ++..-.+.+.+.+.++.-+..+++|.+
T Consensus 490 qrv~iAral~---~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH 540 (595)
T 2yl4_A 490 QRIAIARALL---KNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAH 540 (595)
T ss_dssp HHHHHHHHHH---HCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECC
T ss_pred HHHHHHHHHH---cCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 4667777775 467999999994 665556667777777533544666543
No 77
>2nyv_A Pgpase, PGP, phosphoglycolate phosphatase; structural genomics, PSI-2, protein structure initiative; 2.10A {Aquifex aeolicus} PDB: 2yy6_A
Probab=26.08 E-value=95 Score=18.70 Aligned_cols=31 Identities=6% Similarity=-0.156 Sum_probs=22.4
Q ss_pred ecCCCCCCChHHHHHHHHhcCCC-ceeEEEec
Q psy5946 24 KDLVLPVDDPKYLENLVEERCSQ-VSLSARLG 54 (63)
Q Consensus 24 D~l~l~~~KTk~L~~~l~~~~~~-~s~LiI~g 54 (63)
++.....||+..+...++.+|.. ..+++|+.
T Consensus 133 ~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~vGD 164 (222)
T 2nyv_A 133 DTFGEKKPSPTPVLKTLEILGEEPEKALIVGD 164 (222)
T ss_dssp TSSCTTCCTTHHHHHHHHHHTCCGGGEEEEES
T ss_pred CcCCCCCCChHHHHHHHHHhCCCchhEEEECC
Confidence 44445668899999999998876 35777754
No 78
>4a8j_B Elongator complex protein 5; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_B
Probab=25.88 E-value=71 Score=22.67 Aligned_cols=41 Identities=15% Similarity=0.281 Sum_probs=28.2
Q ss_pred cCCcEEEEecCC-CCCCChHHHHHHHHhcCCCceeEEEecccCCc
Q psy5946 16 MQDDLHIVKDLV-LPVDDPKYLENLVEERCSQVSLSARLGIRDLQ 59 (63)
Q Consensus 16 ~q~~LiIvD~l~-l~~~KTk~L~~~l~~~~~~~s~LiI~g~~~~~ 59 (63)
++..|||||++. ++. ..|...+...--....|+..=|.|.|
T Consensus 99 ~~k~LVIIDSLN~l~~---~~L~~FlsSi~sP~~sLv~vYH~DvP 140 (270)
T 4a8j_B 99 AKKHMVIIDSLNYIST---EYITRFLSEIASPHCTMVATYHKDIK 140 (270)
T ss_dssp CCCEEEEESCGGGSCG---GGHHHHHHHHCCTTEEEEEEEETTSC
T ss_pred CcceEEEEecCcchhh---hhHHHHHHHhhcCCcEEEEEecCCCC
Confidence 557899999996 554 67888888865444456655555554
No 79
>4ex6_A ALNB; modified rossman fold, phosphatase, magnesium binding, hydro; 1.25A {Streptomyces SP} PDB: 4ex7_A
Probab=25.83 E-value=74 Score=18.91 Aligned_cols=32 Identities=3% Similarity=-0.207 Sum_probs=23.4
Q ss_pred ecCCCCCCChHHHHHHHHhcCCC-ceeEEEecc
Q psy5946 24 KDLVLPVDDPKYLENLVEERCSQ-VSLSARLGI 55 (63)
Q Consensus 24 D~l~l~~~KTk~L~~~l~~~~~~-~s~LiI~g~ 55 (63)
++.....||+..+...++.+|.. ..+++|+.+
T Consensus 154 ~~~~~~kp~~~~~~~~~~~lg~~~~~~i~vGD~ 186 (237)
T 4ex6_A 154 DSVERGKPHPDMALHVARGLGIPPERCVVIGDG 186 (237)
T ss_dssp TTSSSCTTSSHHHHHHHHHHTCCGGGEEEEESS
T ss_pred CCCCCCCCCHHHHHHHHHHcCCCHHHeEEEcCC
Confidence 44455677889999999999887 357777543
No 80
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=25.58 E-value=1.1e+02 Score=18.23 Aligned_cols=40 Identities=13% Similarity=-0.090 Sum_probs=30.0
Q ss_pred hcCCcEEEEecCCCCCCChHHHHHHHHhcCCCceeEEEeccc
Q psy5946 15 LMQDDLHIVKDLVLPVDDPKYLENLVEERCSQVSLSARLGIR 56 (63)
Q Consensus 15 ~~q~~LiIvD~l~l~~~KTk~L~~~l~~~~~~~s~LiI~g~~ 56 (63)
..+++++|+=+..-.++.+-...+.++++|.. ++.|.+..
T Consensus 77 ~~~~d~vI~iS~sG~t~~~~~~~~~ak~~g~~--vi~IT~~~ 116 (186)
T 1m3s_A 77 LAEGDLVIIGSGSGETKSLIHTAAKAKSLHGI--VAALTINP 116 (186)
T ss_dssp CCTTCEEEEECSSSCCHHHHHHHHHHHHTTCE--EEEEESCT
T ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHHHCCCE--EEEEECCC
Confidence 46789999888877777788888888887764 66665543
No 81
>2hoq_A Putative HAD-hydrolase PH1655; haloacid dehalogenase, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.70A {Pyrococcus horikoshii}
Probab=25.36 E-value=1.1e+02 Score=18.47 Aligned_cols=33 Identities=6% Similarity=-0.147 Sum_probs=24.5
Q ss_pred EecCCCCCCChHHHHHHHHhcCCC-ceeEEEecc
Q psy5946 23 VKDLVLPVDDPKYLENLVEERCSQ-VSLSARLGI 55 (63)
Q Consensus 23 vD~l~l~~~KTk~L~~~l~~~~~~-~s~LiI~g~ 55 (63)
.++.....|++..+...++.+|.. ..+++|+.+
T Consensus 143 ~~~~~~~Kp~~~~~~~~~~~~g~~~~~~i~iGD~ 176 (241)
T 2hoq_A 143 SDFEGVKKPHPKIFKKALKAFNVKPEEALMVGDR 176 (241)
T ss_dssp GGGGTCCTTCHHHHHHHHHHHTCCGGGEEEEESC
T ss_pred eCCCCCCCCCHHHHHHHHHHcCCCcccEEEECCC
Confidence 355556677889999999999877 357888654
No 82
>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica}
Probab=25.30 E-value=87 Score=18.17 Aligned_cols=32 Identities=6% Similarity=-0.050 Sum_probs=24.3
Q ss_pred ecCCCCCCChHHHHHHHHhcCCC-ceeEEEecc
Q psy5946 24 KDLVLPVDDPKYLENLVEERCSQ-VSLSARLGI 55 (63)
Q Consensus 24 D~l~l~~~KTk~L~~~l~~~~~~-~s~LiI~g~ 55 (63)
++.....|++..+...++++|.. ..+++|+.+
T Consensus 95 ~~~~~~KP~~~~~~~~~~~~~~~~~~~~~vGD~ 127 (179)
T 3l8h_A 95 DGCACRKPLPGMYRDIARRYDVDLAGVPAVGDS 127 (179)
T ss_dssp SCCSSSTTSSHHHHHHHHHHTCCCTTCEEEESS
T ss_pred CCCCCCCCCHHHHHHHHHHcCCCHHHEEEECCC
Confidence 44556778889999999999987 358888643
No 83
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=25.29 E-value=92 Score=21.62 Aligned_cols=38 Identities=3% Similarity=0.134 Sum_probs=25.5
Q ss_pred CCcEEEEecCC--CCCCChHHHHHHHHhcCC-CceeEEEec
Q psy5946 17 QDDLHIVKDLV--LPVDDPKYLENLVEERCS-QVSLSARLG 54 (63)
Q Consensus 17 q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~-~~s~LiI~g 54 (63)
...++++|+.. ++....+.+.+.+.++.- +..+++|..
T Consensus 355 ~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th 395 (430)
T 1w1w_A 355 PSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISL 395 (430)
T ss_dssp CCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECS
T ss_pred CCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEEC
Confidence 56899999994 555566777888877532 333555544
No 84
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=25.26 E-value=59 Score=19.28 Aligned_cols=40 Identities=8% Similarity=0.064 Sum_probs=23.5
Q ss_pred hhhcCCcEEEEecCCCCCCC---hHHHHHHHHhcC-CCceeEEEe
Q psy5946 13 IKLMQDDLHIVKDLVLPVDD---PKYLENLVEERC-SQVSLSARL 53 (63)
Q Consensus 13 ~K~~q~~LiIvD~l~l~~~K---Tk~L~~~l~~~~-~~~s~LiI~ 53 (63)
.++.+.+++|+|++.....+ ...|.+.+..+. -+. .+|+.
T Consensus 96 ~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~-~ii~t 139 (180)
T 3ec2_A 96 KTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLK-STIIT 139 (180)
T ss_dssp HHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTC-EEEEE
T ss_pred HHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCC-CEEEE
Confidence 34567899999999643322 234556666653 333 44544
No 85
>2wf7_A Beta-PGM, beta-phosphoglucomutase; transition state analogue, haloacid dehalogenase superfamily, isomerase, phosphotransferase; HET: G7P; 1.05A {Lactococcus lactis} PDB: 1o03_A* 1z4n_A* 1z4o_A* 1zol_A 2wf5_A* 2wf6_A* 1o08_A* 2wf8_A* 2wf9_A* 2wfa_A 2whe_A 1lvh_A* 3fm9_A
Probab=25.23 E-value=1e+02 Score=17.80 Aligned_cols=32 Identities=3% Similarity=-0.098 Sum_probs=21.9
Q ss_pred ecCCCCCCChHHHHHHHHhcCCC-ceeEEEecc
Q psy5946 24 KDLVLPVDDPKYLENLVEERCSQ-VSLSARLGI 55 (63)
Q Consensus 24 D~l~l~~~KTk~L~~~l~~~~~~-~s~LiI~g~ 55 (63)
++.....|++..+...++.+|.. ..+++|+.+
T Consensus 139 ~~~~~~Kp~~~~~~~~~~~lgi~~~~~i~iGD~ 171 (221)
T 2wf7_A 139 AEVAASKPAPDIFIAAAHAVGVAPSESIGLEDS 171 (221)
T ss_dssp TTSSSCTTSSHHHHHHHHHTTCCGGGEEEEESS
T ss_pred ccCCCCCCChHHHHHHHHHcCCChhHeEEEeCC
Confidence 34444556667999999999887 357777543
No 86
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=25.13 E-value=65 Score=21.17 Aligned_cols=49 Identities=6% Similarity=0.143 Sum_probs=33.0
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC--CCceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC--SQVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~--~~~s~LiI~g 54 (63)
++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++. .+..++++..
T Consensus 135 qrv~lAraL~~---~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtH 187 (253)
T 2nq2_C 135 QLILIARAIAS---ECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTH 187 (253)
T ss_dssp HHHHHHHHHHT---TCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEES
T ss_pred HHHHHHHHHHc---CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 56777777765 67999999984 55555666777777652 2434666654
No 87
>3dv9_A Beta-phosphoglucomutase; structural genomics, APC60149, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.72A {Bacteroides vulgatus}
Probab=25.13 E-value=95 Score=18.40 Aligned_cols=32 Identities=6% Similarity=-0.119 Sum_probs=23.7
Q ss_pred ecCCCCCCChHHHHHHHHhcCCC-ceeEEEecc
Q psy5946 24 KDLVLPVDDPKYLENLVEERCSQ-VSLSARLGI 55 (63)
Q Consensus 24 D~l~l~~~KTk~L~~~l~~~~~~-~s~LiI~g~ 55 (63)
++.....||+..+...++.+|.. ..+++|+.+
T Consensus 159 ~~~~~~kp~~~~~~~~~~~lg~~~~~~i~vGD~ 191 (247)
T 3dv9_A 159 FDVKYGKPNPEPYLMALKKGGFKPNEALVIENA 191 (247)
T ss_dssp GGCSSCTTSSHHHHHHHHHHTCCGGGEEEEECS
T ss_pred ccCCCCCCCCHHHHHHHHHcCCChhheEEEeCC
Confidence 44456678888999999999987 357777543
No 88
>3qxg_A Inorganic pyrophosphatase; hydrolase, magnesium binding site, NEW YORK research center for structural genomics; HET: TLA; 1.24A {Bacteroides thetaiotaomicron} PDB: 3qu2_A* 3qx7_A 3quq_A* 3r9k_A 3qut_A 3qu9_A* 3qu7_A 3qu5_A 3qyp_A 3quc_A 3qub_A 3qu4_A
Probab=25.03 E-value=99 Score=18.60 Aligned_cols=32 Identities=6% Similarity=-0.107 Sum_probs=24.0
Q ss_pred ecCCCCCCChHHHHHHHHhcCCC-ceeEEEecc
Q psy5946 24 KDLVLPVDDPKYLENLVEERCSQ-VSLSARLGI 55 (63)
Q Consensus 24 D~l~l~~~KTk~L~~~l~~~~~~-~s~LiI~g~ 55 (63)
++.....||+..+...++.+|.. ..+++|+.+
T Consensus 160 ~~~~~~kp~~~~~~~~~~~lg~~~~~~i~vGD~ 192 (243)
T 3qxg_A 160 FDVKYGKPNPEPYLMALKKGGLKADEAVVIENA 192 (243)
T ss_dssp TTCSSCTTSSHHHHHHHHHTTCCGGGEEEEECS
T ss_pred HhCCCCCCChHHHHHHHHHcCCCHHHeEEEeCC
Confidence 44456678889999999999987 357777643
No 89
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=24.92 E-value=70 Score=20.43 Aligned_cols=49 Identities=10% Similarity=0.065 Sum_probs=32.4
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC-CCceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC-SQVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~~~s~LiI~g 54 (63)
++++|..||. .+-+++++|+.. ++..-.+.+.+.+.++. -+..++++.+
T Consensus 147 qrv~laral~---~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtH 198 (224)
T 2pcj_A 147 QRVAIARALA---NEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTH 198 (224)
T ss_dssp HHHHHHHHTT---TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred HHHHHHHHHH---cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcC
Confidence 5667777775 467899999984 55555666777776641 2444666654
No 90
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}
Probab=24.90 E-value=82 Score=17.02 Aligned_cols=30 Identities=3% Similarity=-0.181 Sum_probs=21.7
Q ss_pred CCCCCCChHHHHHHHHhcCCC-ceeEEEecc
Q psy5946 26 LVLPVDDPKYLENLVEERCSQ-VSLSARLGI 55 (63)
Q Consensus 26 l~l~~~KTk~L~~~l~~~~~~-~s~LiI~g~ 55 (63)
.....|++..+...++++|.. ..+++|+.+
T Consensus 70 ~~~~Kp~~~~~~~~~~~~~~~~~~~~~vgD~ 100 (137)
T 2pr7_A 70 LGVEKPEEAAFQAAADAIDLPMRDCVLVDDS 100 (137)
T ss_dssp HSCCTTSHHHHHHHHHHTTCCGGGEEEEESC
T ss_pred CCCCCCCHHHHHHHHHHcCCCcccEEEEcCC
Confidence 345667788888899998877 357887643
No 91
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=24.51 E-value=1.3e+02 Score=18.65 Aligned_cols=43 Identities=7% Similarity=-0.121 Sum_probs=33.2
Q ss_pred hhhhcCCcEEEEecCCCCCCChHHHHHHHHhcCCCceeEEEeccc
Q psy5946 12 SIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCSQVSLSARLGIR 56 (63)
Q Consensus 12 S~K~~q~~LiIvD~l~l~~~KTk~L~~~l~~~~~~~s~LiI~g~~ 56 (63)
.....+++++|+=+..-.++.+-...+.++++|.. ++.|.+..
T Consensus 126 ~~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~G~~--vIaIT~~~ 168 (212)
T 2i2w_A 126 EAVGREGDVLLGISTSGNSANVIKAIAAAREKGMK--VITLTGKD 168 (212)
T ss_dssp HHHCCTTCEEEEECSSSCCHHHHHHHHHHHHHTCE--EEEEEETT
T ss_pred HhcCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCe--EEEEECCC
Confidence 34568899999998888888888888888888875 56665543
No 92
>3umb_A Dehalogenase-like hydrolase; 2.20A {Ralstonia solanacearum}
Probab=24.48 E-value=95 Score=18.29 Aligned_cols=33 Identities=9% Similarity=-0.113 Sum_probs=22.8
Q ss_pred EEecCCCCCCChHHHHHHHHhcCCC-ceeEEEec
Q psy5946 22 IVKDLVLPVDDPKYLENLVEERCSQ-VSLSARLG 54 (63)
Q Consensus 22 IvD~l~l~~~KTk~L~~~l~~~~~~-~s~LiI~g 54 (63)
..++.....|++..+...++.+|.. ..+++|+.
T Consensus 147 ~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~vGD 180 (233)
T 3umb_A 147 SVDAVRLYKTAPAAYALAPRAFGVPAAQILFVSS 180 (233)
T ss_dssp EGGGTTCCTTSHHHHTHHHHHHTSCGGGEEEEES
T ss_pred EecccCCCCcCHHHHHHHHHHhCCCcccEEEEeC
Confidence 3344455667778888888988876 45777753
No 93
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=24.41 E-value=1.2e+02 Score=18.04 Aligned_cols=41 Identities=12% Similarity=-0.003 Sum_probs=30.5
Q ss_pred hhcCCcEEEEecCCCCCCChHHHHHHHHhcCCCceeEEEeccc
Q psy5946 14 KLMQDDLHIVKDLVLPVDDPKYLENLVEERCSQVSLSARLGIR 56 (63)
Q Consensus 14 K~~q~~LiIvD~l~l~~~KTk~L~~~l~~~~~~~s~LiI~g~~ 56 (63)
.+..++++|+=+..-.++.+-.+.+.++++|.. ++.|.+..
T Consensus 93 ~~~~~d~vI~iS~sG~t~~~~~~~~~ak~~g~~--vi~IT~~~ 133 (183)
T 2xhz_A 93 MVTPQDVVIAISNSGESSEITALIPVLKRLHVP--LICITGRP 133 (183)
T ss_dssp TCCTTCEEEEECSSSCCHHHHHHHHHHHTTTCC--EEEEESCT
T ss_pred cCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCC--EEEEECCC
Confidence 356889999988887777788888888877765 66665544
No 94
>2fdr_A Conserved hypothetical protein; SAD, structural genomics, agrobacter tumefaciens, HAD-superfamily hydrolase; 2.00A {Agrobacterium tumefaciens str} SCOP: c.108.1.6
Probab=24.33 E-value=73 Score=18.69 Aligned_cols=36 Identities=11% Similarity=-0.051 Sum_probs=24.9
Q ss_pred EEEEecCCCC--CCChHHHHHHHHhcCCC-ceeEEEecc
Q psy5946 20 LHIVKDLVLP--VDDPKYLENLVEERCSQ-VSLSARLGI 55 (63)
Q Consensus 20 LiIvD~l~l~--~~KTk~L~~~l~~~~~~-~s~LiI~g~ 55 (63)
.+..++.... .||+..+...++.+|.. ..+++|+.+
T Consensus 131 ~~~~~~~~~~~~kpk~~~~~~~~~~l~~~~~~~i~iGD~ 169 (229)
T 2fdr_A 131 IYSAKDLGADRVKPKPDIFLHGAAQFGVSPDRVVVVEDS 169 (229)
T ss_dssp EEEHHHHCTTCCTTSSHHHHHHHHHHTCCGGGEEEEESS
T ss_pred EEeccccccCCCCcCHHHHHHHHHHcCCChhHeEEEcCC
Confidence 3334444556 78888999999999887 457777543
No 95
>1qq5_A Protein (L-2-haloacid dehalogenase); hydrolase; 1.52A {Xanthobacter autotrophicus} SCOP: c.108.1.1 PDB: 1qq6_A* 1qq7_A* 1aq6_A
Probab=24.24 E-value=1.1e+02 Score=18.66 Aligned_cols=34 Identities=9% Similarity=-0.129 Sum_probs=25.1
Q ss_pred EEEEecCCCCCCChHHHHHHHHhcCCC-ceeEEEe
Q psy5946 20 LHIVKDLVLPVDDPKYLENLVEERCSQ-VSLSARL 53 (63)
Q Consensus 20 LiIvD~l~l~~~KTk~L~~~l~~~~~~-~s~LiI~ 53 (63)
++..++.....|++..+...++++|.. ..+++|+
T Consensus 137 ~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~vG 171 (253)
T 1qq5_A 137 VISVDAKRVFKPHPDSYALVEEVLGVTPAEVLFVS 171 (253)
T ss_dssp EEEGGGGTCCTTSHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEccccCCCCCCHHHHHHHHHHcCCCHHHEEEEe
Confidence 444556666778888999999999887 3577774
No 96
>4eek_A Beta-phosphoglucomutase-related protein; hydrolase, magnesium binding site, enzyme function initiativ; 1.60A {Deinococcus radiodurans} PDB: 4eel_A* 4een_A
Probab=24.02 E-value=97 Score=18.84 Aligned_cols=33 Identities=3% Similarity=-0.259 Sum_probs=25.1
Q ss_pred EecCC-CCCCChHHHHHHHHhcCCC-ceeEEEecc
Q psy5946 23 VKDLV-LPVDDPKYLENLVEERCSQ-VSLSARLGI 55 (63)
Q Consensus 23 vD~l~-l~~~KTk~L~~~l~~~~~~-~s~LiI~g~ 55 (63)
-++.. ...||+..+...++.+|.. ..+++|+.+
T Consensus 160 ~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~i~iGD~ 194 (259)
T 4eek_A 160 PSWVGGRGKPHPDLYTFAAQQLGILPERCVVIEDS 194 (259)
T ss_dssp GGGGTTCCTTSSHHHHHHHHHTTCCGGGEEEEESS
T ss_pred HhhcCcCCCCChHHHHHHHHHcCCCHHHEEEEcCC
Confidence 45556 6778899999999999987 457877644
No 97
>3m1y_A Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, phophoserine phosphatase, protein structure initiative, structural genomics; 2.40A {Helicobacter pylori} SCOP: c.108.1.0
Probab=23.80 E-value=86 Score=18.32 Aligned_cols=30 Identities=7% Similarity=-0.158 Sum_probs=22.4
Q ss_pred CCCCCCChHHHHHHHHhcCCC-ceeEEEecc
Q psy5946 26 LVLPVDDPKYLENLVEERCSQ-VSLSARLGI 55 (63)
Q Consensus 26 l~l~~~KTk~L~~~l~~~~~~-~s~LiI~g~ 55 (63)
.....+|+..+...++.+|.. ..+++|+.+
T Consensus 137 ~~~~k~k~~~~~~~~~~~g~~~~~~i~vGDs 167 (217)
T 3m1y_A 137 MMFSHSKGEMLLVLQRLLNISKTNTLVVGDG 167 (217)
T ss_dssp CCSTTHHHHHHHHHHHHHTCCSTTEEEEECS
T ss_pred CCCCCChHHHHHHHHHHcCCCHhHEEEEeCC
Confidence 335678899999999999886 357777644
No 98
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=23.55 E-value=1.3e+02 Score=18.15 Aligned_cols=41 Identities=12% Similarity=-0.103 Sum_probs=32.1
Q ss_pred hhhcCCcEEEEecCCCCCCChHHHHHHHHhcCCCceeEEEecc
Q psy5946 13 IKLMQDDLHIVKDLVLPVDDPKYLENLVEERCSQVSLSARLGI 55 (63)
Q Consensus 13 ~K~~q~~LiIvD~l~l~~~KTk~L~~~l~~~~~~~s~LiI~g~ 55 (63)
.....+|++|+=+..-.++.+-...+..+++|.. +..|.+.
T Consensus 105 ~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~--vI~IT~~ 145 (196)
T 2yva_A 105 ALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMT--IVALTGY 145 (196)
T ss_dssp HHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCE--EEEEECT
T ss_pred hcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCE--EEEEeCC
Confidence 4568899999999888888888888888888875 5556554
No 99
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=23.41 E-value=59 Score=26.57 Aligned_cols=52 Identities=13% Similarity=0.019 Sum_probs=35.0
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhc-CCCceeEEEecc
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEER-CSQVSLSARLGI 55 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~-~~~~s~LiI~g~ 55 (63)
.+..|..||.... .++++|+|+.. +....++.|.+.++.+ ..|+++++|..-
T Consensus 528 QRV~LA~aL~~~~-~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHd 582 (993)
T 2ygr_A 528 QRIRLATQIGSGL-VGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHD 582 (993)
T ss_dssp HHHHHHHHHTTCC-CSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HHHHHHHHHhhCC-CCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCC
Confidence 3556677776532 24799999985 5556778888877775 366667777543
No 100
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=23.36 E-value=1.3e+02 Score=17.95 Aligned_cols=42 Identities=10% Similarity=-0.221 Sum_probs=31.7
Q ss_pred hhhcCCcEEEEecCCCCCCChHHHHHHHHhcCCCceeEEEeccc
Q psy5946 13 IKLMQDDLHIVKDLVLPVDDPKYLENLVEERCSQVSLSARLGIR 56 (63)
Q Consensus 13 ~K~~q~~LiIvD~l~l~~~KTk~L~~~l~~~~~~~s~LiI~g~~ 56 (63)
.....+|++|+=+..-.++.+....+.++++|.. ++.|.+..
T Consensus 106 ~~~~~~Dvvi~iS~sG~t~~~~~~~~~ak~~g~~--vi~iT~~~ 147 (188)
T 1tk9_A 106 ALGNEKDVLIGISTSGKSPNVLEALKKAKELNML--CLGLSGKG 147 (188)
T ss_dssp HHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCE--EEEEEEGG
T ss_pred HhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCE--EEEEeCCC
Confidence 3467899999998887787888888888887774 55665543
No 101
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=23.08 E-value=46 Score=22.27 Aligned_cols=40 Identities=10% Similarity=-0.049 Sum_probs=27.1
Q ss_pred cCCcEEEEecCC-CCCCChHHHHHHHHhcCCCceeEEEecccC
Q psy5946 16 MQDDLHIVKDLV-LPVDDPKYLENLVEERCSQVSLSARLGIRD 57 (63)
Q Consensus 16 ~q~~LiIvD~l~-l~~~KTk~L~~~l~~~~~~~s~LiI~g~~~ 57 (63)
+-++++|||+.+ +....+-.|.+..+..|. .++|+++...
T Consensus 120 tp~s~lIVD~AekLS~kE~~~Lld~A~~~na--qvvll~~~~R 160 (189)
T 2l8b_A 120 TPGSTVIVDQGEKLSLKETLTLLDGAARHNV--QVLITDSGQR 160 (189)
T ss_dssp CCCCEEEEEESSSHHHHHHHHHHHHHHHTTC--CEEEEESSTT
T ss_pred CCCCEEEEechhhcCHHHHHHHHHHHHhcCC--EEEEeCCccc
Confidence 677899999996 555555556665555563 4888876543
No 102
>3vay_A HAD-superfamily hydrolase; rossmann fold, haloacid dehalogenase; 1.98A {Pseudomonas syringae PV}
Probab=23.05 E-value=79 Score=18.62 Aligned_cols=30 Identities=10% Similarity=-0.054 Sum_probs=22.6
Q ss_pred CCCCCCChHHHHHHHHhcCCC-ceeEEEecc
Q psy5946 26 LVLPVDDPKYLENLVEERCSQ-VSLSARLGI 55 (63)
Q Consensus 26 l~l~~~KTk~L~~~l~~~~~~-~s~LiI~g~ 55 (63)
.....|++..+...++.+|.. ..+++|+.+
T Consensus 151 ~~~~kp~~~~~~~~~~~~~~~~~~~~~vGD~ 181 (230)
T 3vay_A 151 LGIGKPDPAPFLEALRRAKVDASAAVHVGDH 181 (230)
T ss_dssp HTCCTTSHHHHHHHHHHHTCCGGGEEEEESC
T ss_pred cCCCCcCHHHHHHHHHHhCCCchheEEEeCC
Confidence 334467888999999999987 457888654
No 103
>1zrn_A L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseudomonas SP} SCOP: c.108.1.1 PDB: 1zrm_A 1jud_A 1qh9_A
Probab=22.93 E-value=1.3e+02 Score=17.83 Aligned_cols=30 Identities=7% Similarity=-0.098 Sum_probs=21.6
Q ss_pred ecCCCCCCChHHHHHHHHhcCCC-ceeEEEe
Q psy5946 24 KDLVLPVDDPKYLENLVEERCSQ-VSLSARL 53 (63)
Q Consensus 24 D~l~l~~~KTk~L~~~l~~~~~~-~s~LiI~ 53 (63)
++.....|++..+...++.+|.. ..+++|+
T Consensus 145 ~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~iG 175 (232)
T 1zrn_A 145 DPVQVYKPDNRVYELAEQALGLDRSAILFVA 175 (232)
T ss_dssp GGGTCCTTSHHHHHHHHHHHTSCGGGEEEEE
T ss_pred cccCCCCCCHHHHHHHHHHcCCCcccEEEEe
Confidence 44555667777888888988876 3577774
No 104
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=22.65 E-value=1.8e+02 Score=19.48 Aligned_cols=48 Identities=17% Similarity=0.134 Sum_probs=28.2
Q ss_pred hHHHHhhhhcCCcEEEEecCCCCCCChHHHHHHHHhcCC--C-ceeEEEecc
Q psy5946 7 LTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCS--Q-VSLSARLGI 55 (63)
Q Consensus 7 Lk~ALS~K~~q~~LiIvD~l~l~~~KTk~L~~~l~~~~~--~-~s~LiI~g~ 55 (63)
++.|+. ++..-+++|+|.......+...+.++.+-+.. . ...+++++.
T Consensus 173 l~~al~-~~~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at 223 (296)
T 2px0_A 173 FQQAKE-LFSEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSAT 223 (296)
T ss_dssp HHHHHH-HGGGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETT
T ss_pred HHHHHH-HhcCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECC
Confidence 345554 45777999999877766565555554444331 1 235666544
No 105
>3umc_A Haloacid dehalogenase; HY; 2.15A {Pseudomonas aeruginosa}
Probab=22.65 E-value=75 Score=19.04 Aligned_cols=30 Identities=7% Similarity=-0.205 Sum_probs=22.8
Q ss_pred cCCCCCCChHHHHHHHHhcCCC-ceeEEEec
Q psy5946 25 DLVLPVDDPKYLENLVEERCSQ-VSLSARLG 54 (63)
Q Consensus 25 ~l~l~~~KTk~L~~~l~~~~~~-~s~LiI~g 54 (63)
......||+..+...++.+|.. ..+++|+.
T Consensus 168 ~~~~~kp~~~~~~~~~~~lgi~~~~~~~iGD 198 (254)
T 3umc_A 168 LFGHYKPDPQVYLGACRLLDLPPQEVMLCAA 198 (254)
T ss_dssp HHTCCTTSHHHHHHHHHHHTCCGGGEEEEES
T ss_pred ccccCCCCHHHHHHHHHHcCCChHHEEEEcC
Confidence 3356678899999999999987 45777764
No 106
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=22.58 E-value=1.8e+02 Score=19.36 Aligned_cols=39 Identities=3% Similarity=-0.018 Sum_probs=27.8
Q ss_pred cCCcEEEEecCCCCCCChH---HHHHHHHhcCCCceeEEEeccc
Q psy5946 16 MQDDLHIVKDLVLPVDDPK---YLENLVEERCSQVSLSARLGIR 56 (63)
Q Consensus 16 ~q~~LiIvD~l~l~~~KTk---~L~~~l~~~~~~~s~LiI~g~~ 56 (63)
+..+.+.|-+..--+.||- .|+..+... |.+||+||.-.
T Consensus 102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~--G~rVLLID~D~ 143 (299)
T 3cio_A 102 TENNILMITGATPDSGKTFVSSTLAAVIAQS--DQKVLFIDADL 143 (299)
T ss_dssp CSCCEEEEEESSSSSCHHHHHHHHHHHHHHT--TCCEEEEECCT
T ss_pred CCCeEEEEECCCCCCChHHHHHHHHHHHHhC--CCcEEEEECCC
Confidence 4567888999887888884 455556654 44699998643
No 107
>1lng_A SRP19, signal recognition particle 19 kDa protein; protein-RNA complex, signaling protein/RNA complex; 2.30A {Methanocaldococcus jannaschii} SCOP: d.201.1.1 PDB: 2v3c_A 3ndb_A 1l9a_A*
Probab=22.36 E-value=73 Score=18.55 Aligned_cols=22 Identities=14% Similarity=0.167 Sum_probs=19.8
Q ss_pred cCCCCCCChHHHHHHHHhcCCC
Q psy5946 25 DLVLPVDDPKYLENLVEERCSQ 46 (63)
Q Consensus 25 ~l~l~~~KTk~L~~~l~~~~~~ 46 (63)
+..++.|..+++.+.++++|+.
T Consensus 23 ~~aV~~P~~~EI~~a~~~lgl~ 44 (87)
T 1lng_A 23 ELAIEKPSLKDIEKALKKLGLE 44 (87)
T ss_dssp TTCBSSCCHHHHHHHHHHTTCC
T ss_pred HHhccCCCHHHHHHHHHHcCCC
Confidence 4568899999999999999997
No 108
>2w43_A Hypothetical 2-haloalkanoic acid dehalogenase; hydrolase, metabolic process; HET: MES; 1.66A {Sulfolobus tokodaii} PDB: 2w11_A
Probab=22.16 E-value=1.2e+02 Score=17.63 Aligned_cols=30 Identities=7% Similarity=-0.051 Sum_probs=21.8
Q ss_pred ecCCCCCCChHHHHHHHHhcCCCceeEEEec
Q psy5946 24 KDLVLPVDDPKYLENLVEERCSQVSLSARLG 54 (63)
Q Consensus 24 D~l~l~~~KTk~L~~~l~~~~~~~s~LiI~g 54 (63)
++.....|++..+...++++| ...+++|+.
T Consensus 122 ~~~~~~Kp~~~~~~~~~~~~~-~~~~~~vGD 151 (201)
T 2w43_A 122 ESVKEYKPSPKVYKYFLDSIG-AKEAFLVSS 151 (201)
T ss_dssp GGGTCCTTCHHHHHHHHHHHT-CSCCEEEES
T ss_pred hhcCCCCCCHHHHHHHHHhcC-CCcEEEEeC
Confidence 444556677888888899888 545788754
No 109
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=21.59 E-value=1.4e+02 Score=21.75 Aligned_cols=49 Identities=6% Similarity=0.087 Sum_probs=31.7
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcCCCceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERCSQVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~~~~s~LiI~g 54 (63)
++++|.-||- ++-+++++|+.. ++..-.+.+.+.+.++.-+..+++|.+
T Consensus 484 Qrv~lAral~---~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH 534 (578)
T 4a82_A 484 QRLSIARIFL---NNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAH 534 (578)
T ss_dssp HHHHHHHHHH---HCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECS
T ss_pred HHHHHHHHHH---cCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEec
Confidence 3556666664 567999999984 554444566677776654555666643
No 110
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=21.54 E-value=90 Score=20.58 Aligned_cols=50 Identities=12% Similarity=0.191 Sum_probs=33.4
Q ss_pred hhhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC-CCceeEEEec
Q psy5946 2 SIVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC-SQVSLSARLG 54 (63)
Q Consensus 2 vR~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~~~s~LiI~g 54 (63)
-++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++. -+..++++..
T Consensus 152 ~qRv~lAraL~~---~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtH 204 (256)
T 1vpl_A 152 VRKLLIARALMV---NPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSH 204 (256)
T ss_dssp HHHHHHHHHHTT---CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHHc---CCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcC
Confidence 356777777764 67999999984 55555666777776642 2444666654
No 111
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=21.46 E-value=91 Score=20.48 Aligned_cols=49 Identities=6% Similarity=0.106 Sum_probs=32.8
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC-CCceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC-SQVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~~~s~LiI~g 54 (63)
++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++. -+..+++|.+
T Consensus 160 qRv~lAraL~~---~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtH 211 (262)
T 1b0u_A 160 QRVSIARALAM---EPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTH 211 (262)
T ss_dssp HHHHHHHHHHT---CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred HHHHHHHHHhc---CCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 56777777764 67999999984 66556666777776641 2434666654
No 112
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=21.36 E-value=1.2e+02 Score=21.91 Aligned_cols=50 Identities=18% Similarity=0.159 Sum_probs=32.6
Q ss_pred hhhhhhHHH--HhhhhcCCcE----EEEec-C--CCCCCChHHHHHHHHhcCCCceeEEEecccC
Q psy5946 2 SIVLGLTST--LSIKLMQDDL----HIVKD-L--VLPVDDPKYLENLVEERCSQVSLSARLGIRD 57 (63)
Q Consensus 2 vR~lGLk~A--LS~K~~q~~L----iIvD~-l--~l~~~KTk~L~~~l~~~~~~~s~LiI~g~~~ 57 (63)
.+++++..| |. .+-++ +++|+ . .++.. .+.+.+.+++++. ++++|.+..+
T Consensus 241 ~qrlalAra~rL~---~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~~~--tviiVth~~~ 299 (460)
T 2npi_A 241 ISQLGQVVGQRLH---LDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKLNV--NIMLVLCSET 299 (460)
T ss_dssp HHHHHHHHHHHHH---HCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHTTC--CEEEEECCSS
T ss_pred HHHHHHHHHHHhc---cCcccCcceEEEeCCcccccChh-HHHHHHHHHHhCC--CEEEEEccCc
Confidence 356666666 53 35577 88999 3 24443 7788888887654 3777766544
No 113
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=21.30 E-value=1.4e+02 Score=17.76 Aligned_cols=43 Identities=19% Similarity=-0.050 Sum_probs=31.2
Q ss_pred hhhcCCcEEEEecCCCCCCChHHHHHHHHhcCCCceeEEEecccC
Q psy5946 13 IKLMQDDLHIVKDLVLPVDDPKYLENLVEERCSQVSLSARLGIRD 57 (63)
Q Consensus 13 ~K~~q~~LiIvD~l~l~~~KTk~L~~~l~~~~~~~s~LiI~g~~~ 57 (63)
....+++++|+=+..-.++.+-...+.++++|.. ++.|.+..+
T Consensus 83 ~~~~~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~--vi~IT~~~~ 125 (187)
T 3sho_A 83 ANLRPTDLMIGVSVWRYLRDTVAALAGAAERGVP--TMALTDSSV 125 (187)
T ss_dssp HTCCTTEEEEEECCSSCCHHHHHHHHHHHHTTCC--EEEEESCTT
T ss_pred hcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCC--EEEEeCCCC
Confidence 3567889999988877777777777778877765 666665443
No 114
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=21.22 E-value=1.4e+02 Score=17.71 Aligned_cols=40 Identities=13% Similarity=0.004 Sum_probs=29.1
Q ss_pred hhcCCcEEEEecCCCCCCChHHHHHHHHhcCCCceeEEEecc
Q psy5946 14 KLMQDDLHIVKDLVLPVDDPKYLENLVEERCSQVSLSARLGI 55 (63)
Q Consensus 14 K~~q~~LiIvD~l~l~~~KTk~L~~~l~~~~~~~s~LiI~g~ 55 (63)
....++++|+=+..-.++.+-...+.++++|.. ++.|.+.
T Consensus 79 ~~~~~d~vi~iS~sG~t~~~~~~~~~ak~~g~~--vi~IT~~ 118 (180)
T 1jeo_A 79 SYEKDDLLILISGSGRTESVLTVAKKAKNINNN--IIAIVCE 118 (180)
T ss_dssp CCCTTCEEEEEESSSCCHHHHHHHHHHHTTCSC--EEEEESS
T ss_pred cCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCc--EEEEeCC
Confidence 356789988888877777777777778877765 5666553
No 115
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=21.17 E-value=54 Score=20.94 Aligned_cols=46 Identities=11% Similarity=0.134 Sum_probs=30.3
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCCCCCCChHHHHHHHHhcCCCceeEEEec
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCSQVSLSARLG 54 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~l~~~KTk~L~~~l~~~~~~~s~LiI~g 54 (63)
++++|..||.. +.+++++|+.... -.+.+.+.+.++.-+..++ +.+
T Consensus 111 qrv~lAraL~~---~p~lllLDEPts~--~~~~l~~~l~~l~~g~tii-vtH 156 (208)
T 3b85_A 111 APLAYMRGRTL---NDAFVILDEAQNT--TPAQMKMFLTRLGFGSKMV-VTG 156 (208)
T ss_dssp EEGGGGTTCCB---CSEEEEECSGGGC--CHHHHHHHHTTBCTTCEEE-EEE
T ss_pred HHHHHHHHHhc---CCCEEEEeCCccc--cHHHHHHHHHHhcCCCEEE-EEC
Confidence 34555555553 6789999999766 6777888888773343344 544
No 116
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=21.12 E-value=1.1e+02 Score=21.88 Aligned_cols=50 Identities=6% Similarity=0.064 Sum_probs=35.3
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC--CCceeEEEecc
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC--SQVSLSARLGI 55 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~--~~~s~LiI~g~ 55 (63)
++.++..||.. +-+++++|+.. ++..-++.+.+.+.++. .+..+++|...
T Consensus 170 QRVaIArAL~~---~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHd 223 (366)
T 3tui_C 170 QRVAIARALAS---NPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHE 223 (366)
T ss_dssp HHHHHHHHTTT---CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESC
T ss_pred HHHHHHHHHhc---CCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 56777777764 67999999984 66666777788887652 34457777654
No 117
>3m9l_A Hydrolase, haloacid dehalogenase-like family; HAD family hydrolase, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Pseudomonas fluorescens} PDB: 2ybd_A* 3r09_A*
Probab=20.98 E-value=1.4e+02 Score=17.47 Aligned_cols=28 Identities=18% Similarity=0.045 Sum_probs=21.0
Q ss_pred CCCCCChHHHHHHHHhcCCC-ceeEEEec
Q psy5946 27 VLPVDDPKYLENLVEERCSQ-VSLSARLG 54 (63)
Q Consensus 27 ~l~~~KTk~L~~~l~~~~~~-~s~LiI~g 54 (63)
....||+..+...++.+|.. ..+++|+.
T Consensus 124 ~~~kp~~~~~~~~~~~~g~~~~~~i~iGD 152 (205)
T 3m9l_A 124 APPKPHPGGLLKLAEAWDVSPSRMVMVGD 152 (205)
T ss_dssp SCCTTSSHHHHHHHHHTTCCGGGEEEEES
T ss_pred CCCCCCHHHHHHHHHHcCCCHHHEEEECC
Confidence 45567788999999999886 35777754
No 118
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=20.98 E-value=1.7e+02 Score=19.45 Aligned_cols=50 Identities=14% Similarity=0.053 Sum_probs=33.9
Q ss_pred hhhhhHHHHhhhhcCCcEEEEecCC--CCCCChHHHHHHHHhcC-CCcee--EEEecc
Q psy5946 3 IVLGLTSTLSIKLMQDDLHIVKDLV--LPVDDPKYLENLVEERC-SQVSL--SARLGI 55 (63)
Q Consensus 3 R~lGLk~ALS~K~~q~~LiIvD~l~--l~~~KTk~L~~~l~~~~-~~~s~--LiI~g~ 55 (63)
++++|..||.. +-+++++|+.. ++..-.+.+.+.+.++. -+..+ ++|...
T Consensus 168 qRv~lAraL~~---~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd 222 (279)
T 2ihy_A 168 QRVMIARALMG---QPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHF 222 (279)
T ss_dssp HHHHHHHHHHT---CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred HHHHHHHHHhC---CCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecC
Confidence 56777777764 67999999994 66556666777776641 13347 777654
No 119
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=20.80 E-value=71 Score=19.08 Aligned_cols=40 Identities=8% Similarity=-0.049 Sum_probs=22.6
Q ss_pred cCCcEEEEecCCCCCCC-hHHHHHHHHhcC-CCceeEEEecc
Q psy5946 16 MQDDLHIVKDLVLPVDD-PKYLENLVEERC-SQVSLSARLGI 55 (63)
Q Consensus 16 ~q~~LiIvD~l~l~~~K-Tk~L~~~l~~~~-~~~s~LiI~g~ 55 (63)
.+-+++|+|++..-.+. ...|.+.+..+. -+...+||.+.
T Consensus 82 ~~~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~ 123 (149)
T 2kjq_A 82 FEAEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSE 123 (149)
T ss_dssp GGCSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEES
T ss_pred hCCCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECC
Confidence 45689999999754332 345556665542 22222565543
No 120
>3cnh_A Hydrolase family protein; NP_295428.1, predicted hydrolase of haloacid dehalogenase-LI superfamily; HET: MSE PG4; 1.66A {Deinococcus radiodurans R1}
Probab=20.78 E-value=1.1e+02 Score=17.69 Aligned_cols=32 Identities=6% Similarity=-0.157 Sum_probs=22.1
Q ss_pred EecCCCCCCChHHHHHHHHhcCCC-ceeEEEec
Q psy5946 23 VKDLVLPVDDPKYLENLVEERCSQ-VSLSARLG 54 (63)
Q Consensus 23 vD~l~l~~~KTk~L~~~l~~~~~~-~s~LiI~g 54 (63)
-++.....|++..+...++.+|.. ..+++|+.
T Consensus 134 ~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~vgD 166 (200)
T 3cnh_A 134 SSALGVMKPNPAMYRLGLTLAQVRPEEAVMVDD 166 (200)
T ss_dssp HHHHSCCTTCHHHHHHHHHHHTCCGGGEEEEES
T ss_pred ecccCCCCCCHHHHHHHHHHcCCCHHHeEEeCC
Confidence 344455667777888888888876 35777754
No 121
>4g9b_A Beta-PGM, beta-phosphoglucomutase; HAD, putative phosphoglucomutase, enzyme function initiative structural genomics, isomerase; 1.70A {Escherichia coli}
Probab=20.62 E-value=1.3e+02 Score=18.58 Aligned_cols=32 Identities=9% Similarity=-0.065 Sum_probs=22.9
Q ss_pred ecCCCCCCChHHHHHHHHhcCCC-ceeEEEecc
Q psy5946 24 KDLVLPVDDPKYLENLVEERCSQ-VSLSARLGI 55 (63)
Q Consensus 24 D~l~l~~~KTk~L~~~l~~~~~~-~s~LiI~g~ 55 (63)
++....-|+|..+...++.+|.. ..+++|+.+
T Consensus 143 ~~~~~~KP~p~~~~~a~~~lg~~p~e~l~VgDs 175 (243)
T 4g9b_A 143 SQLKNSKPDPEIFLAACAGLGVPPQACIGIEDA 175 (243)
T ss_dssp GGCSSCTTSTHHHHHHHHHHTSCGGGEEEEESS
T ss_pred ccccCCCCcHHHHHHHHHHcCCChHHEEEEcCC
Confidence 44455667788888899999887 457877543
No 122
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=20.39 E-value=1.5e+02 Score=18.29 Aligned_cols=41 Identities=15% Similarity=0.093 Sum_probs=31.4
Q ss_pred hhcCCcEEEEecCCCCCCChHHHHHHHHhcCCCceeEEEeccc
Q psy5946 14 KLMQDDLHIVKDLVLPVDDPKYLENLVEERCSQVSLSARLGIR 56 (63)
Q Consensus 14 K~~q~~LiIvD~l~l~~~KTk~L~~~l~~~~~~~s~LiI~g~~ 56 (63)
.+..+|++|+=+..-.++.+-.+.+.++++|.. ++.|.+..
T Consensus 86 ~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~--vI~IT~~~ 126 (200)
T 1vim_A 86 RITDQDVLVGISGSGETTSVVNISKKAKDIGSK--LVAVTGKR 126 (200)
T ss_dssp CCCTTCEEEEECSSSCCHHHHHHHHHHHHHTCE--EEEEESCT
T ss_pred CCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCe--EEEEECCC
Confidence 356789999988888888888888888888775 66665543
No 123
>2go7_A Hydrolase, haloacid dehalogenase-like family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.10A {Streptococcus pneumoniae} SCOP: c.108.1.6
Probab=20.30 E-value=1.3e+02 Score=16.97 Aligned_cols=31 Identities=6% Similarity=-0.098 Sum_probs=21.3
Q ss_pred ecCCCCCCChHHHHHHHHhcCCC-ceeEEEec
Q psy5946 24 KDLVLPVDDPKYLENLVEERCSQ-VSLSARLG 54 (63)
Q Consensus 24 D~l~l~~~KTk~L~~~l~~~~~~-~s~LiI~g 54 (63)
++.....|++..+...++.+|.. ..+++|+.
T Consensus 134 ~~~~~~Kp~~~~~~~~~~~~~i~~~~~~~iGD 165 (207)
T 2go7_A 134 QSGFVRKPSPEAATYLLDKYQLNSDNTYYIGD 165 (207)
T ss_dssp GGCCCCTTSSHHHHHHHHHHTCCGGGEEEEES
T ss_pred CcCCCCCCCcHHHHHHHHHhCCCcccEEEECC
Confidence 33344456688889999998877 35677754
No 124
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=20.23 E-value=1.3e+02 Score=22.69 Aligned_cols=44 Identities=2% Similarity=-0.074 Sum_probs=36.9
Q ss_pred hhhhcCCcEEEEecCCCCCCChHHHHHHHHhcCCCceeEEEeccc
Q psy5946 12 SIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCSQVSLSARLGIR 56 (63)
Q Consensus 12 S~K~~q~~LiIvD~l~l~~~KTk~L~~~l~~~~~~~s~LiI~g~~ 56 (63)
|..+.++-++|||..+-.++-|..+-..+.+.+... ++||-=+|
T Consensus 105 aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~-i~~iNKiD 148 (709)
T 4fn5_A 105 SLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPR-IVYVNKMD 148 (709)
T ss_dssp HHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCE-EEEEECSS
T ss_pred HHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCe-EEEEcccc
Confidence 344599999999999988999999999999999984 88875444
No 125
>2i6x_A Hydrolase, haloacid dehalogenase-like family; HAD superfamily, struct genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Porphyromonas gingivalis}
Probab=20.15 E-value=88 Score=18.25 Aligned_cols=32 Identities=0% Similarity=-0.206 Sum_probs=23.2
Q ss_pred ecCCCCCCChHHHHHHHHhcCCC-ceeEEEecc
Q psy5946 24 KDLVLPVDDPKYLENLVEERCSQ-VSLSARLGI 55 (63)
Q Consensus 24 D~l~l~~~KTk~L~~~l~~~~~~-~s~LiI~g~ 55 (63)
++.....|++..+...++.+|.. ..+++|+.+
T Consensus 144 ~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~igD~ 176 (211)
T 2i6x_A 144 CQMGKYKPNEDIFLEMIADSGMKPEETLFIDDG 176 (211)
T ss_dssp HHHTCCTTSHHHHHHHHHHHCCCGGGEEEECSC
T ss_pred cccCCCCCCHHHHHHHHHHhCCChHHeEEeCCC
Confidence 44455667788999999999987 357777543
Done!