Your job contains 1 sequence.
>psy5946
MSIVLGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCSQVSLSARLGIRDLQY
DDS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy5946
(63 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0001995 - symbol:mRpL4 "mitochondrial ribosomal pr... 124 2.0e-07 1
MGI|MGI:2137210 - symbol:Mrpl4 "mitochondrial ribosomal p... 113 3.3e-06 1
RGD|1311777 - symbol:Mrpl4 "mitochondrial ribosomal prote... 113 3.3e-06 1
UNIPROTKB|K7EJ73 - symbol:MRPL4 "39S ribosomal protein L4... 103 9.0e-06 1
UNIPROTKB|K7ELQ0 - symbol:MRPL4 "39S ribosomal protein L4... 103 2.2e-05 1
UNIPROTKB|F1PB94 - symbol:MRPL4 "Uncharacterized protein"... 105 2.5e-05 1
UNIPROTKB|Q32PI6 - symbol:MRPL4 "39S ribosomal protein L4... 103 4.1e-05 1
UNIPROTKB|K7ES61 - symbol:MRPL4 "39S ribosomal protein L4... 103 4.3e-05 1
ZFIN|ZDB-GENE-050522-388 - symbol:zgmrpl4 "mitochondrial ... 103 4.4e-05 1
UNIPROTKB|Q9BYD3 - symbol:MRPL4 "39S ribosomal protein L4... 103 4.6e-05 1
UNIPROTKB|F1S3J8 - symbol:MRPL4 "Uncharacterized protein"... 101 6.9e-05 1
>FB|FBgn0001995 [details] [associations]
symbol:mRpL4 "mitochondrial ribosomal protein L4"
species:7227 "Drosophila melanogaster" [GO:0005762 "mitochondrial
large ribosomal subunit" evidence=ISS] [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573
EMBL:AE014134 GO:GO:0006412 GO:GO:0005762 GO:GO:0003735
eggNOG:COG0088 Gene3D:3.40.1370.10 InterPro:IPR013005
PANTHER:PTHR10746 SUPFAM:SSF52166 TIGRFAMs:TIGR03953 CTD:51073
GeneTree:ENSGT00390000014512 OMA:VYGLNVY EMBL:AY061407
RefSeq:NP_524939.1 UniGene:Dm.1535 SMR:Q9V3D0 IntAct:Q9V3D0
STRING:Q9V3D0 EnsemblMetazoa:FBtr0080843 GeneID:49425
KEGG:dme:Dmel_CG5818 UCSC:CG5818-RA FlyBase:FBgn0001995
InParanoid:Q9V3D0 OrthoDB:EOG43FFCQ GenomeRNAi:49425 NextBio:839752
Uniprot:Q9V3D0
Length = 296
Score = 124 (48.7 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 23/40 (57%), Positives = 33/40 (82%)
Query: 4 VLGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEER 43
VLGLTSTLS+KL QDDLHI+ ++ +P D ++L++L+ ER
Sbjct: 174 VLGLTSTLSVKLAQDDLHIIDNVDIPTGDAEFLKDLIAER 213
>MGI|MGI:2137210 [details] [associations]
symbol:Mrpl4 "mitochondrial ribosomal protein L4"
species:10090 "Mus musculus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573 MGI:MGI:2137210
GO:GO:0005739 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
eggNOG:COG0088 HOGENOM:HOG000248767 Gene3D:3.40.1370.10
InterPro:IPR013005 PANTHER:PTHR10746 SUPFAM:SSF52166
TIGRFAMs:TIGR03953 CTD:51073 GeneTree:ENSGT00390000014512
HOVERGEN:HBG083638 OMA:VYGLNVY OrthoDB:EOG4XKV7V EMBL:AB049634
EMBL:AB041599 EMBL:AK002464 EMBL:BC037064 EMBL:BC039983
EMBL:BC061095 IPI:IPI00121359 RefSeq:NP_075656.2 UniGene:Mm.427576
ProteinModelPortal:Q9DCU6 SMR:Q9DCU6 STRING:Q9DCU6
PhosphoSite:Q9DCU6 PaxDb:Q9DCU6 PRIDE:Q9DCU6
Ensembl:ENSMUST00000003386 GeneID:66163 KEGG:mmu:66163
UCSC:uc009oju.1 InParanoid:Q9DCU6 NextBio:320818 Bgee:Q9DCU6
CleanEx:MM_MRPL4 Genevestigator:Q9DCU6
GermOnline:ENSMUSG00000003299 Uniprot:Q9DCU6
Length = 294
Score = 113 (44.8 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 23/39 (58%), Positives = 27/39 (69%)
Query: 5 LGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEER 43
LGL L++KLMQDDLHIV L LP DP+YL L + R
Sbjct: 172 LGLKVALTVKLMQDDLHIVDSLELPTADPQYLTELAQYR 210
>RGD|1311777 [details] [associations]
symbol:Mrpl4 "mitochondrial ribosomal protein L4" species:10116
"Rattus norvegicus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR002136 InterPro:IPR023574
Pfam:PF00573 RGD:1311777 GO:GO:0005739 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 EMBL:CH473993 Gene3D:3.40.1370.10 InterPro:IPR013005
PANTHER:PTHR10746 SUPFAM:SSF52166 TIGRFAMs:TIGR03953
HAMAP:MF_01328_B CTD:51073 GeneTree:ENSGT00390000014512 OMA:VYGLNVY
OrthoDB:EOG4XKV7V IPI:IPI00201814 RefSeq:NP_001102224.1
UniGene:Rn.13113 Ensembl:ENSRNOT00000049706 GeneID:363023
KEGG:rno:363023 UCSC:RGD:1311777 NextBio:682165 Uniprot:D4A131
Length = 294
Score = 113 (44.8 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 23/39 (58%), Positives = 27/39 (69%)
Query: 5 LGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEER 43
LGL L++KLMQDDLHIV L LP DP+YL L + R
Sbjct: 172 LGLKVALTVKLMQDDLHIVDSLELPTADPQYLTELAQYR 210
>UNIPROTKB|K7EJ73 [details] [associations]
symbol:MRPL4 "39S ribosomal protein L4, mitochondrial"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR002136
InterPro:IPR023574 Pfam:PF00573 EMBL:AC011511 Gene3D:3.40.1370.10
InterPro:IPR013005 PANTHER:PTHR10746 SUPFAM:SSF52166
HGNC:HGNC:14276 Ensembl:ENST00000590702 Uniprot:K7EJ73
Length = 119
Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 21/39 (53%), Positives = 25/39 (64%)
Query: 5 LGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEER 43
LGL L++KL QDDLHI+ L LP DP+YL L R
Sbjct: 70 LGLKVALTVKLAQDDLHIMDSLELPTGDPQYLTELAHYR 108
>UNIPROTKB|K7ELQ0 [details] [associations]
symbol:MRPL4 "39S ribosomal protein L4, mitochondrial"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR002136
InterPro:IPR023574 Pfam:PF00573 EMBL:AC011511 Gene3D:3.40.1370.10
InterPro:IPR013005 PANTHER:PTHR10746 SUPFAM:SSF52166
TIGRFAMs:TIGR03953 HGNC:HGNC:14276 Ensembl:ENST00000588502
Uniprot:K7ELQ0
Length = 220
Score = 103 (41.3 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 21/39 (53%), Positives = 25/39 (64%)
Query: 5 LGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEER 43
LGL L++KL QDDLHI+ L LP DP+YL L R
Sbjct: 171 LGLKVALTVKLAQDDLHIMDSLELPTGDPQYLTELAHYR 209
>UNIPROTKB|F1PB94 [details] [associations]
symbol:MRPL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] InterPro:IPR002136
InterPro:IPR023574 Pfam:PF00573 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 Gene3D:3.40.1370.10 InterPro:IPR013005
PANTHER:PTHR10746 SUPFAM:SSF52166 TIGRFAMs:TIGR03953
HAMAP:MF_01328_B CTD:51073 GeneTree:ENSGT00390000014512 OMA:VYGLNVY
EMBL:AAEX03012426 RefSeq:XP_854013.1 Ensembl:ENSCAFT00000028364
GeneID:611273 KEGG:cfa:611273 Uniprot:F1PB94
Length = 294
Score = 105 (42.0 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 22/40 (55%), Positives = 25/40 (62%)
Query: 4 VLGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEER 43
V GL L++KL QDDLHIV L LP DP+YL L R
Sbjct: 171 VQGLKVALTVKLAQDDLHIVDSLELPTSDPQYLTELARYR 210
>UNIPROTKB|Q32PI6 [details] [associations]
symbol:MRPL4 "39S ribosomal protein L4, mitochondrial"
species:9913 "Bos taurus" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573
GO:GO:0005739 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
eggNOG:COG0088 HOGENOM:HOG000248767 Gene3D:3.40.1370.10
InterPro:IPR013005 PANTHER:PTHR10746 SUPFAM:SSF52166
TIGRFAMs:TIGR03953 PDB:2FTC PDBsum:2FTC EMBL:BC108102
IPI:IPI00700987 RefSeq:NP_001032527.1 UniGene:Bt.40442
STRING:Q32PI6 PRIDE:Q32PI6 Ensembl:ENSBTAT00000001861 GeneID:507154
KEGG:bta:507154 CTD:51073 GeneTree:ENSGT00390000014512
HOVERGEN:HBG083638 InParanoid:Q32PI6 OMA:VYGLNVY OrthoDB:EOG4XKV7V
EvolutionaryTrace:Q32PI6 NextBio:20867926 Uniprot:Q32PI6
Length = 294
Score = 103 (41.3 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 22/40 (55%), Positives = 25/40 (62%)
Query: 4 VLGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEER 43
V GL L++KL QDDLHIV L LP DP+YL L R
Sbjct: 171 VQGLKVALTVKLAQDDLHIVDSLELPTTDPQYLMELARYR 210
>UNIPROTKB|K7ES61 [details] [associations]
symbol:MRPL4 "39S ribosomal protein L4, mitochondrial"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR002136
InterPro:IPR023574 Pfam:PF00573 EMBL:AC011511 Gene3D:3.40.1370.10
InterPro:IPR013005 PANTHER:PTHR10746 SUPFAM:SSF52166
TIGRFAMs:TIGR03953 HAMAP:MF_01328_B HGNC:HGNC:14276
Ensembl:ENST00000592514 Uniprot:K7ES61
Length = 300
Score = 103 (41.3 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 21/39 (53%), Positives = 25/39 (64%)
Query: 5 LGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEER 43
LGL L++KL QDDLHI+ L LP DP+YL L R
Sbjct: 172 LGLKVALTVKLAQDDLHIMDSLELPTGDPQYLTELAHYR 210
>ZFIN|ZDB-GENE-050522-388 [details] [associations]
symbol:zgmrpl4 "mitochondrial ribosomal protein L4"
species:7955 "Danio rerio" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573
ZFIN:ZDB-GENE-050522-388 GO:GO:0005739 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 eggNOG:COG0088 HOGENOM:HOG000248767
Gene3D:3.40.1370.10 InterPro:IPR013005 PANTHER:PTHR10746
SUPFAM:SSF52166 TIGRFAMs:TIGR03953 GeneTree:ENSGT00390000014512
HOVERGEN:HBG083638 OMA:VYGLNVY OrthoDB:EOG4XKV7V EMBL:BC095145
IPI:IPI00505153 RefSeq:NP_001018572.1 UniGene:Dr.14878
STRING:Q503X2 Ensembl:ENSDART00000081765 GeneID:553771
KEGG:dre:553771 CTD:553771 InParanoid:Q503X2 NextBio:20880493
Bgee:Q503X2 Uniprot:Q503X2
Length = 302
Score = 103 (41.3 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 22/40 (55%), Positives = 27/40 (67%)
Query: 4 VLGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEER 43
V GL LS KL QD LHIV L +P DP+YL++LV+ R
Sbjct: 180 VQGLKIALSAKLAQDYLHIVDSLEIPTPDPQYLQDLVKHR 219
>UNIPROTKB|Q9BYD3 [details] [associations]
symbol:MRPL4 "39S ribosomal protein L4, mitochondrial"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573
EMBL:AB049635 GO:GO:0005739 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 EMBL:CH471106 EMBL:AC011511 eggNOG:COG0088
HOGENOM:HOG000248767 Gene3D:3.40.1370.10 InterPro:IPR013005
PANTHER:PTHR10746 SUPFAM:SSF52166 TIGRFAMs:TIGR03953 OMA:GKAHGPV
CTD:51073 HOVERGEN:HBG083638 OrthoDB:EOG4XKV7V EMBL:AF132962
EMBL:BC000756 EMBL:BC009858 EMBL:AY007152 IPI:IPI00023334
IPI:IPI00107137 RefSeq:NP_057040.2 RefSeq:NP_666499.1
RefSeq:NP_666500.1 UniGene:Hs.279652 ProteinModelPortal:Q9BYD3
SMR:Q9BYD3 IntAct:Q9BYD3 MINT:MINT-1389069 STRING:Q9BYD3
PhosphoSite:Q9BYD3 DMDM:74733471 PaxDb:Q9BYD3 PRIDE:Q9BYD3
Ensembl:ENST00000253099 Ensembl:ENST00000307422
Ensembl:ENST00000393733 GeneID:51073 KEGG:hsa:51073 UCSC:uc002mnm.3
UCSC:uc002mno.3 GeneCards:GC19P010362 HGNC:HGNC:14276 HPA:HPA051261
MIM:611823 neXtProt:NX_Q9BYD3 PharmGKB:PA30971 InParanoid:Q9BYD3
PhylomeDB:Q9BYD3 ChiTaRS:MRPL4 GenomeRNAi:51073 NextBio:53691
Bgee:Q9BYD3 CleanEx:HS_MRPL4 Genevestigator:Q9BYD3
GermOnline:ENSG00000105364 Uniprot:Q9BYD3
Length = 311
Score = 103 (41.3 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 21/39 (53%), Positives = 25/39 (64%)
Query: 5 LGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEER 43
LGL L++KL QDDLHI+ L LP DP+YL L R
Sbjct: 172 LGLKVALTVKLAQDDLHIMDSLELPTGDPQYLTELAHYR 210
>UNIPROTKB|F1S3J8 [details] [associations]
symbol:MRPL4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573 GO:GO:0005739
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 Gene3D:3.40.1370.10
InterPro:IPR013005 PANTHER:PTHR10746 SUPFAM:SSF52166
TIGRFAMs:TIGR03953 HAMAP:MF_01328_B GeneTree:ENSGT00390000014512
OMA:VYGLNVY EMBL:CU657936 RefSeq:XP_003123269.2
Ensembl:ENSSSCT00000014920 GeneID:100511369 KEGG:ssc:100511369
Uniprot:F1S3J8
Length = 294
Score = 101 (40.6 bits), Expect = 6.9e-05, P = 6.9e-05
Identities = 22/40 (55%), Positives = 25/40 (62%)
Query: 4 VLGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEER 43
V GL L++KL QDDLHIV L LP DP+YL L R
Sbjct: 171 VQGLKVALTVKLAQDDLHIVDSLELPTADPQYLIELARYR 210
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.138 0.374 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 63 63 0.00091 102 3 11 22 0.40 28
29 0.42 28
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 11
No. of states in DFA: 410 (44 KB)
Total size of DFA: 70 KB (2062 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 7.44u 0.07s 7.51t Elapsed: 00:00:22
Total cpu time: 7.44u 0.07s 7.51t Elapsed: 00:00:22
Start: Thu Aug 15 13:04:09 2013 End: Thu Aug 15 13:04:31 2013