BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>psy5946
MSIVLGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEERCSQVSLSARLGIRDLQY
DDS

High Scoring Gene Products

Symbol, full name Information P value
mRpL4
mitochondrial ribosomal protein L4
protein from Drosophila melanogaster 2.0e-07
Mrpl4
mitochondrial ribosomal protein L4
protein from Mus musculus 3.3e-06
Mrpl4
mitochondrial ribosomal protein L4
gene from Rattus norvegicus 3.3e-06
MRPL4
39S ribosomal protein L4, mitochondrial
protein from Homo sapiens 9.0e-06
MRPL4
39S ribosomal protein L4, mitochondrial
protein from Homo sapiens 2.2e-05
MRPL4
Uncharacterized protein
protein from Canis lupus familiaris 2.5e-05
MRPL4
39S ribosomal protein L4, mitochondrial
protein from Bos taurus 4.1e-05
MRPL4
39S ribosomal protein L4, mitochondrial
protein from Homo sapiens 4.3e-05
zgmrpl4
mitochondrial ribosomal protein L4
gene_product from Danio rerio 4.4e-05
MRPL4
39S ribosomal protein L4, mitochondrial
protein from Homo sapiens 4.6e-05
LOC100511369
Uncharacterized protein
protein from Sus scrofa 6.9e-05

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  psy5946
        (63 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

FB|FBgn0001995 - symbol:mRpL4 "mitochondrial ribosomal pr...   124  2.0e-07   1
MGI|MGI:2137210 - symbol:Mrpl4 "mitochondrial ribosomal p...   113  3.3e-06   1
RGD|1311777 - symbol:Mrpl4 "mitochondrial ribosomal prote...   113  3.3e-06   1
UNIPROTKB|K7EJ73 - symbol:MRPL4 "39S ribosomal protein L4...   103  9.0e-06   1
UNIPROTKB|K7ELQ0 - symbol:MRPL4 "39S ribosomal protein L4...   103  2.2e-05   1
UNIPROTKB|F1PB94 - symbol:MRPL4 "Uncharacterized protein"...   105  2.5e-05   1
UNIPROTKB|Q32PI6 - symbol:MRPL4 "39S ribosomal protein L4...   103  4.1e-05   1
UNIPROTKB|K7ES61 - symbol:MRPL4 "39S ribosomal protein L4...   103  4.3e-05   1
ZFIN|ZDB-GENE-050522-388 - symbol:zgmrpl4 "mitochondrial ...   103  4.4e-05   1
UNIPROTKB|Q9BYD3 - symbol:MRPL4 "39S ribosomal protein L4...   103  4.6e-05   1
UNIPROTKB|F1S3J8 - symbol:MRPL4 "Uncharacterized protein"...   101  6.9e-05   1


>FB|FBgn0001995 [details] [associations]
            symbol:mRpL4 "mitochondrial ribosomal protein L4"
            species:7227 "Drosophila melanogaster" [GO:0005762 "mitochondrial
            large ribosomal subunit" evidence=ISS] [GO:0003735 "structural
            constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
            evidence=ISS] InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573
            EMBL:AE014134 GO:GO:0006412 GO:GO:0005762 GO:GO:0003735
            eggNOG:COG0088 Gene3D:3.40.1370.10 InterPro:IPR013005
            PANTHER:PTHR10746 SUPFAM:SSF52166 TIGRFAMs:TIGR03953 CTD:51073
            GeneTree:ENSGT00390000014512 OMA:VYGLNVY EMBL:AY061407
            RefSeq:NP_524939.1 UniGene:Dm.1535 SMR:Q9V3D0 IntAct:Q9V3D0
            STRING:Q9V3D0 EnsemblMetazoa:FBtr0080843 GeneID:49425
            KEGG:dme:Dmel_CG5818 UCSC:CG5818-RA FlyBase:FBgn0001995
            InParanoid:Q9V3D0 OrthoDB:EOG43FFCQ GenomeRNAi:49425 NextBio:839752
            Uniprot:Q9V3D0
        Length = 296

 Score = 124 (48.7 bits), Expect = 2.0e-07, P = 2.0e-07
 Identities = 23/40 (57%), Positives = 33/40 (82%)

Query:     4 VLGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEER 43
             VLGLTSTLS+KL QDDLHI+ ++ +P  D ++L++L+ ER
Sbjct:   174 VLGLTSTLSVKLAQDDLHIIDNVDIPTGDAEFLKDLIAER 213


>MGI|MGI:2137210 [details] [associations]
            symbol:Mrpl4 "mitochondrial ribosomal protein L4"
            species:10090 "Mus musculus" [GO:0003735 "structural constituent of
            ribosome" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA]
            [GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
            evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573 MGI:MGI:2137210
            GO:GO:0005739 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
            eggNOG:COG0088 HOGENOM:HOG000248767 Gene3D:3.40.1370.10
            InterPro:IPR013005 PANTHER:PTHR10746 SUPFAM:SSF52166
            TIGRFAMs:TIGR03953 CTD:51073 GeneTree:ENSGT00390000014512
            HOVERGEN:HBG083638 OMA:VYGLNVY OrthoDB:EOG4XKV7V EMBL:AB049634
            EMBL:AB041599 EMBL:AK002464 EMBL:BC037064 EMBL:BC039983
            EMBL:BC061095 IPI:IPI00121359 RefSeq:NP_075656.2 UniGene:Mm.427576
            ProteinModelPortal:Q9DCU6 SMR:Q9DCU6 STRING:Q9DCU6
            PhosphoSite:Q9DCU6 PaxDb:Q9DCU6 PRIDE:Q9DCU6
            Ensembl:ENSMUST00000003386 GeneID:66163 KEGG:mmu:66163
            UCSC:uc009oju.1 InParanoid:Q9DCU6 NextBio:320818 Bgee:Q9DCU6
            CleanEx:MM_MRPL4 Genevestigator:Q9DCU6
            GermOnline:ENSMUSG00000003299 Uniprot:Q9DCU6
        Length = 294

 Score = 113 (44.8 bits), Expect = 3.3e-06, P = 3.3e-06
 Identities = 23/39 (58%), Positives = 27/39 (69%)

Query:     5 LGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEER 43
             LGL   L++KLMQDDLHIV  L LP  DP+YL  L + R
Sbjct:   172 LGLKVALTVKLMQDDLHIVDSLELPTADPQYLTELAQYR 210


>RGD|1311777 [details] [associations]
            symbol:Mrpl4 "mitochondrial ribosomal protein L4" species:10116
            "Rattus norvegicus" [GO:0003735 "structural constituent of
            ribosome" evidence=IEA] [GO:0005739 "mitochondrion"
            evidence=IEA;ISO] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
            "translation" evidence=IEA] InterPro:IPR002136 InterPro:IPR023574
            Pfam:PF00573 RGD:1311777 GO:GO:0005739 GO:GO:0006412 GO:GO:0005840
            GO:GO:0003735 EMBL:CH473993 Gene3D:3.40.1370.10 InterPro:IPR013005
            PANTHER:PTHR10746 SUPFAM:SSF52166 TIGRFAMs:TIGR03953
            HAMAP:MF_01328_B CTD:51073 GeneTree:ENSGT00390000014512 OMA:VYGLNVY
            OrthoDB:EOG4XKV7V IPI:IPI00201814 RefSeq:NP_001102224.1
            UniGene:Rn.13113 Ensembl:ENSRNOT00000049706 GeneID:363023
            KEGG:rno:363023 UCSC:RGD:1311777 NextBio:682165 Uniprot:D4A131
        Length = 294

 Score = 113 (44.8 bits), Expect = 3.3e-06, P = 3.3e-06
 Identities = 23/39 (58%), Positives = 27/39 (69%)

Query:     5 LGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEER 43
             LGL   L++KLMQDDLHIV  L LP  DP+YL  L + R
Sbjct:   172 LGLKVALTVKLMQDDLHIVDSLELPTADPQYLTELAQYR 210


>UNIPROTKB|K7EJ73 [details] [associations]
            symbol:MRPL4 "39S ribosomal protein L4, mitochondrial"
            species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
            ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
            [GO:0006412 "translation" evidence=IEA] InterPro:IPR002136
            InterPro:IPR023574 Pfam:PF00573 EMBL:AC011511 Gene3D:3.40.1370.10
            InterPro:IPR013005 PANTHER:PTHR10746 SUPFAM:SSF52166
            HGNC:HGNC:14276 Ensembl:ENST00000590702 Uniprot:K7EJ73
        Length = 119

 Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
 Identities = 21/39 (53%), Positives = 25/39 (64%)

Query:     5 LGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEER 43
             LGL   L++KL QDDLHI+  L LP  DP+YL  L   R
Sbjct:    70 LGLKVALTVKLAQDDLHIMDSLELPTGDPQYLTELAHYR 108


>UNIPROTKB|K7ELQ0 [details] [associations]
            symbol:MRPL4 "39S ribosomal protein L4, mitochondrial"
            species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
            ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
            [GO:0006412 "translation" evidence=IEA] InterPro:IPR002136
            InterPro:IPR023574 Pfam:PF00573 EMBL:AC011511 Gene3D:3.40.1370.10
            InterPro:IPR013005 PANTHER:PTHR10746 SUPFAM:SSF52166
            TIGRFAMs:TIGR03953 HGNC:HGNC:14276 Ensembl:ENST00000588502
            Uniprot:K7ELQ0
        Length = 220

 Score = 103 (41.3 bits), Expect = 2.2e-05, P = 2.2e-05
 Identities = 21/39 (53%), Positives = 25/39 (64%)

Query:     5 LGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEER 43
             LGL   L++KL QDDLHI+  L LP  DP+YL  L   R
Sbjct:   171 LGLKVALTVKLAQDDLHIMDSLELPTGDPQYLTELAHYR 209


>UNIPROTKB|F1PB94 [details] [associations]
            symbol:MRPL4 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0006412 "translation" evidence=IEA]
            [GO:0005840 "ribosome" evidence=IEA] [GO:0003735 "structural
            constituent of ribosome" evidence=IEA] InterPro:IPR002136
            InterPro:IPR023574 Pfam:PF00573 GO:GO:0006412 GO:GO:0005840
            GO:GO:0003735 Gene3D:3.40.1370.10 InterPro:IPR013005
            PANTHER:PTHR10746 SUPFAM:SSF52166 TIGRFAMs:TIGR03953
            HAMAP:MF_01328_B CTD:51073 GeneTree:ENSGT00390000014512 OMA:VYGLNVY
            EMBL:AAEX03012426 RefSeq:XP_854013.1 Ensembl:ENSCAFT00000028364
            GeneID:611273 KEGG:cfa:611273 Uniprot:F1PB94
        Length = 294

 Score = 105 (42.0 bits), Expect = 2.5e-05, P = 2.5e-05
 Identities = 22/40 (55%), Positives = 25/40 (62%)

Query:     4 VLGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEER 43
             V GL   L++KL QDDLHIV  L LP  DP+YL  L   R
Sbjct:   171 VQGLKVALTVKLAQDDLHIVDSLELPTSDPQYLTELARYR 210


>UNIPROTKB|Q32PI6 [details] [associations]
            symbol:MRPL4 "39S ribosomal protein L4, mitochondrial"
            species:9913 "Bos taurus" [GO:0005739 "mitochondrion" evidence=IEA]
            [GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
            evidence=IEA] [GO:0003735 "structural constituent of ribosome"
            evidence=IEA] InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573
            GO:GO:0005739 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
            eggNOG:COG0088 HOGENOM:HOG000248767 Gene3D:3.40.1370.10
            InterPro:IPR013005 PANTHER:PTHR10746 SUPFAM:SSF52166
            TIGRFAMs:TIGR03953 PDB:2FTC PDBsum:2FTC EMBL:BC108102
            IPI:IPI00700987 RefSeq:NP_001032527.1 UniGene:Bt.40442
            STRING:Q32PI6 PRIDE:Q32PI6 Ensembl:ENSBTAT00000001861 GeneID:507154
            KEGG:bta:507154 CTD:51073 GeneTree:ENSGT00390000014512
            HOVERGEN:HBG083638 InParanoid:Q32PI6 OMA:VYGLNVY OrthoDB:EOG4XKV7V
            EvolutionaryTrace:Q32PI6 NextBio:20867926 Uniprot:Q32PI6
        Length = 294

 Score = 103 (41.3 bits), Expect = 4.1e-05, P = 4.1e-05
 Identities = 22/40 (55%), Positives = 25/40 (62%)

Query:     4 VLGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEER 43
             V GL   L++KL QDDLHIV  L LP  DP+YL  L   R
Sbjct:   171 VQGLKVALTVKLAQDDLHIVDSLELPTTDPQYLMELARYR 210


>UNIPROTKB|K7ES61 [details] [associations]
            symbol:MRPL4 "39S ribosomal protein L4, mitochondrial"
            species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
            ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
            [GO:0006412 "translation" evidence=IEA] InterPro:IPR002136
            InterPro:IPR023574 Pfam:PF00573 EMBL:AC011511 Gene3D:3.40.1370.10
            InterPro:IPR013005 PANTHER:PTHR10746 SUPFAM:SSF52166
            TIGRFAMs:TIGR03953 HAMAP:MF_01328_B HGNC:HGNC:14276
            Ensembl:ENST00000592514 Uniprot:K7ES61
        Length = 300

 Score = 103 (41.3 bits), Expect = 4.3e-05, P = 4.3e-05
 Identities = 21/39 (53%), Positives = 25/39 (64%)

Query:     5 LGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEER 43
             LGL   L++KL QDDLHI+  L LP  DP+YL  L   R
Sbjct:   172 LGLKVALTVKLAQDDLHIMDSLELPTGDPQYLTELAHYR 210


>ZFIN|ZDB-GENE-050522-388 [details] [associations]
            symbol:zgmrpl4 "mitochondrial ribosomal protein L4"
            species:7955 "Danio rerio" [GO:0003735 "structural constituent of
            ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
            [GO:0005840 "ribosome" evidence=IEA] [GO:0030529 "ribonucleoprotein
            complex" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
            InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573
            ZFIN:ZDB-GENE-050522-388 GO:GO:0005739 GO:GO:0006412 GO:GO:0005840
            GO:GO:0003735 eggNOG:COG0088 HOGENOM:HOG000248767
            Gene3D:3.40.1370.10 InterPro:IPR013005 PANTHER:PTHR10746
            SUPFAM:SSF52166 TIGRFAMs:TIGR03953 GeneTree:ENSGT00390000014512
            HOVERGEN:HBG083638 OMA:VYGLNVY OrthoDB:EOG4XKV7V EMBL:BC095145
            IPI:IPI00505153 RefSeq:NP_001018572.1 UniGene:Dr.14878
            STRING:Q503X2 Ensembl:ENSDART00000081765 GeneID:553771
            KEGG:dre:553771 CTD:553771 InParanoid:Q503X2 NextBio:20880493
            Bgee:Q503X2 Uniprot:Q503X2
        Length = 302

 Score = 103 (41.3 bits), Expect = 4.4e-05, P = 4.4e-05
 Identities = 22/40 (55%), Positives = 27/40 (67%)

Query:     4 VLGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEER 43
             V GL   LS KL QD LHIV  L +P  DP+YL++LV+ R
Sbjct:   180 VQGLKIALSAKLAQDYLHIVDSLEIPTPDPQYLQDLVKHR 219


>UNIPROTKB|Q9BYD3 [details] [associations]
            symbol:MRPL4 "39S ribosomal protein L4, mitochondrial"
            species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
            ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
            [GO:0005840 "ribosome" evidence=IEA] [GO:0005739 "mitochondrion"
            evidence=IEA] InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573
            EMBL:AB049635 GO:GO:0005739 GO:GO:0006412 GO:GO:0005840
            GO:GO:0003735 EMBL:CH471106 EMBL:AC011511 eggNOG:COG0088
            HOGENOM:HOG000248767 Gene3D:3.40.1370.10 InterPro:IPR013005
            PANTHER:PTHR10746 SUPFAM:SSF52166 TIGRFAMs:TIGR03953 OMA:GKAHGPV
            CTD:51073 HOVERGEN:HBG083638 OrthoDB:EOG4XKV7V EMBL:AF132962
            EMBL:BC000756 EMBL:BC009858 EMBL:AY007152 IPI:IPI00023334
            IPI:IPI00107137 RefSeq:NP_057040.2 RefSeq:NP_666499.1
            RefSeq:NP_666500.1 UniGene:Hs.279652 ProteinModelPortal:Q9BYD3
            SMR:Q9BYD3 IntAct:Q9BYD3 MINT:MINT-1389069 STRING:Q9BYD3
            PhosphoSite:Q9BYD3 DMDM:74733471 PaxDb:Q9BYD3 PRIDE:Q9BYD3
            Ensembl:ENST00000253099 Ensembl:ENST00000307422
            Ensembl:ENST00000393733 GeneID:51073 KEGG:hsa:51073 UCSC:uc002mnm.3
            UCSC:uc002mno.3 GeneCards:GC19P010362 HGNC:HGNC:14276 HPA:HPA051261
            MIM:611823 neXtProt:NX_Q9BYD3 PharmGKB:PA30971 InParanoid:Q9BYD3
            PhylomeDB:Q9BYD3 ChiTaRS:MRPL4 GenomeRNAi:51073 NextBio:53691
            Bgee:Q9BYD3 CleanEx:HS_MRPL4 Genevestigator:Q9BYD3
            GermOnline:ENSG00000105364 Uniprot:Q9BYD3
        Length = 311

 Score = 103 (41.3 bits), Expect = 4.6e-05, P = 4.6e-05
 Identities = 21/39 (53%), Positives = 25/39 (64%)

Query:     5 LGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEER 43
             LGL   L++KL QDDLHI+  L LP  DP+YL  L   R
Sbjct:   172 LGLKVALTVKLAQDDLHIMDSLELPTGDPQYLTELAHYR 210


>UNIPROTKB|F1S3J8 [details] [associations]
            symbol:MRPL4 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0006412
            "translation" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
            [GO:0003735 "structural constituent of ribosome" evidence=IEA]
            InterPro:IPR002136 InterPro:IPR023574 Pfam:PF00573 GO:GO:0005739
            GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 Gene3D:3.40.1370.10
            InterPro:IPR013005 PANTHER:PTHR10746 SUPFAM:SSF52166
            TIGRFAMs:TIGR03953 HAMAP:MF_01328_B GeneTree:ENSGT00390000014512
            OMA:VYGLNVY EMBL:CU657936 RefSeq:XP_003123269.2
            Ensembl:ENSSSCT00000014920 GeneID:100511369 KEGG:ssc:100511369
            Uniprot:F1S3J8
        Length = 294

 Score = 101 (40.6 bits), Expect = 6.9e-05, P = 6.9e-05
 Identities = 22/40 (55%), Positives = 25/40 (62%)

Query:     4 VLGLTSTLSIKLMQDDLHIVKDLVLPVDDPKYLENLVEER 43
             V GL   L++KL QDDLHIV  L LP  DP+YL  L   R
Sbjct:   171 VQGLKVALTVKLAQDDLHIVDSLELPTADPQYLIELARYR 210


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.138   0.374    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       63        63   0.00091  102 3  11 22  0.40    28
                                                     29  0.42    28


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  11
  No. of states in DFA:  410 (44 KB)
  Total size of DFA:  70 KB (2062 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.44u 0.07s 7.51t   Elapsed:  00:00:22
  Total cpu time:  7.44u 0.07s 7.51t   Elapsed:  00:00:22
  Start:  Thu Aug 15 13:04:09 2013   End:  Thu Aug 15 13:04:31 2013

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