BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5948
(549 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N3L|A Chain A, Crystal Structure Of A Human Aminoacyl-Trna Synthetase
Cytokine
pdb|1Q11|A Chain A, Crystal Structure Of An Active Fragment Of Human
Tyrosyl-Trna Synthetase With Tyrosinol
Length = 372
Score = 493 bits (1268), Expect = e-139, Method: Compositional matrix adjust.
Identities = 247/340 (72%), Positives = 277/340 (81%), Gaps = 3/340 (0%)
Query: 18 SFDEKKQLITRNLQEFLGEDRLNVILKERDLKIYWGTATTGRPHIAYFVPMSKIADFLRA 77
S +EK LITRNLQE LGE++L ILKER+LKIYWGTATTG+PH+AYFVPMSKIADFL+A
Sbjct: 6 SPEEKLHLITRNLQEVLGEEKLKEILKERELKIYWGTATTGKPHVAYFVPMSKIADFLKA 65
Query: 78 GCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQL 137
GCEVTILFADLHAYLDNMKAPWELL LR YYE IKAMLESI VP+ KLKF+KGTDYQL
Sbjct: 66 GCEVTILFADLHAYLDNMKAPWELLELRVSYYENVIKAMLESIGVPLEKLKFIKGTDYQL 125
Query: 138 SKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFGG 197
SKEYTLDVYRLSSV+T+HD+KKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFGG
Sbjct: 126 SKEYTLDVYRLSSVVTQHDSKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFGG 185
Query: 198 VDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGGKMSSSEEDSKIDXXXXXXXXXXXX 257
+DQRKIFT AEKYLP LGY+KR+H MNPMVPGL G KMSSSEE+SKID
Sbjct: 186 IDQRKIFTFAEKYLPALGYSKRVHLMNPMVPGLTGSKMSSSEEESKIDLLDRKEDVKKKL 245
Query: 258 XXXFCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQ 317
FCEPGNVE+NGVLSF+KHV+F L VI RDE GGN ++ Y LE+ FA +
Sbjct: 246 KKAFCEPGNVENNGVLSFIKHVLFPL---KSEFVILRDEKWGGNKTYTAYVDLEKDFAAE 302
Query: 318 ELHPADLKAAAEFYINRLLEPIRKKFESKELKDLTSKAYP 357
+HP DLK + E +N+LL+PIR+KF + LK L S AYP
Sbjct: 303 VVHPGDLKNSVEVALNKLLDPIREKFNTPALKKLASAAYP 342
>pdb|2DLC|X Chain X, Crystal Structure Of The Ternary Complex Of Yeast
Tyrosyl-Trna Synthetase
Length = 394
Score = 389 bits (998), Expect = e-108, Method: Compositional matrix adjust.
Identities = 196/364 (53%), Positives = 260/364 (71%), Gaps = 13/364 (3%)
Query: 7 MNSLNMTSPSLSFDEKKQLITRNLQEFLGEDRLNVIL--KERDLKIYWGTATTGRPHIAY 64
M+S P+ +F LIT+NLQE L + +L ++R LK+YWGTA TGRPH Y
Sbjct: 1 MSSAATVDPNEAFG----LITKNLQEVLNPQIIKDVLEVQKRHLKLYWGTAPTGRPHCGY 56
Query: 65 FVPMSKIADFLRAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPI 124
FVPM+K+ADFL+AGCEVT+L ADLHA+LDNMKAP E++ R KYYE +IKA+L SI+VPI
Sbjct: 57 FVPMTKLADFLKAGCEVTVLLADLHAFLDNMKAPLEVVNYRAKYYELTIKAILRSINVPI 116
Query: 125 SKLKFVKGTDYQLSKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQAL 184
KLKFV G+ YQL+ +YT+D++RLS++++++DAK+AGA+VVKQV +PLLSGL+YP +QAL
Sbjct: 117 EKLKFVVGSSYQLTPDYTMDIFRLSNIVSQNDAKRAGADVVKQVANPLLSGLIYPLMQAL 176
Query: 185 DEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLA-GGKMSSSEEDSK 243
DE++L VD QFGGVDQRKIF LAE+ LP LGY KR H MNPMVPGLA GGKMS+S+ +SK
Sbjct: 177 DEQFLDVDCQFGGVDQRKIFVLAEENLPSLGYKKRAHLMNPMVPGLAQGGKMSASDPNSK 236
Query: 244 IDXXXXXXXXXXXXXXXFCEPGNVEDNGVLSFLKHVVFSL--LKPGEN---LVITRDENN 298
ID FC PGNVE+NG+LSF+++V+ + LK G N I R E
Sbjct: 237 IDLLEEPKQVKKKINSAFCSPGNVEENGLLSFVQYVIAPIQELKFGTNHFEFFIDRPEKF 296
Query: 299 GGNLNFSDYQSLEQVFAKQELHPADLKAAAEFYINRLLEPIRKKF-ESKELKDLTSKAYP 357
GG + + ++ ++ F +++L P DLK IN LLEPIR++F +KE ++ + K YP
Sbjct: 297 GGPITYKSFEEMKLAFKEEKLSPPDLKIGVADAINELLEPIRQEFANNKEFQEASEKGYP 356
Query: 358 PKKP 361
P
Sbjct: 357 VATP 360
>pdb|2CYB|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With L-Tyrosine From Archaeoglobus Fulgidus
pdb|2CYB|B Chain B, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With L-Tyrosine From Archaeoglobus Fulgidus
Length = 323
Score = 196 bits (497), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 114/328 (34%), Positives = 187/328 (57%), Gaps = 10/328 (3%)
Query: 17 LSFDEKKQLITRNLQEFLGEDRLNVILKERDL-KIYWGTATTGRPHIAYFVPMSKIADFL 75
+ EK +LITRN +E + E+ L +++ ++ + Y G +G H+ + + + K+ D
Sbjct: 1 MDITEKLRLITRNAEEVVTEEELRQLIETKEKPRAYVGYEPSGEIHLGHMMTVQKLMDLQ 60
Query: 76 RAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDY 135
AG E+ +L AD+HAYL N K +E +A Y K + ++ + S+ KFV G++Y
Sbjct: 61 EAGFEIIVLLADIHAYL-NEKGTFEEIAEVADYN----KKVFIALGLDESRAKFVLGSEY 115
Query: 136 QLSKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQF 195
QLS++Y LDV +++ + T + A+++ EV ++ E P++S ++YP +QALD +L VD
Sbjct: 116 QLSRDYVLDVLKMARITTLNRARRSMDEVSRRKEDPMVSQMIYPLMQALDIAHLGVDLAV 175
Query: 196 GGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGGKMSSSEEDSKIDXXXXXXXXXX 255
GG+DQRKI LA + LP+LGY+ + P++ GL G KMSSS + + I
Sbjct: 176 GGIDQRKIHMLARENLPRLGYSSPVCLHTPILVGLDGQKMSSS-KGNYISVRDPPEEVER 234
Query: 256 XXXXXFCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFA 315
+C G VE+N +L K + +L +V+ RD GG++ ++ ++ L + F
Sbjct: 235 KIRKAYCPAGVVEENPILDIAK---YHILPRFGKIVVERDAKFGGDVEYASFEELAEDFK 291
Query: 316 KQELHPADLKAAAEFYINRLLEPIRKKF 343
+LHP DLK A Y+N LLE RK+
Sbjct: 292 SGQLHPLDLKIAVAKYLNMLLEDARKRL 319
>pdb|1NTG|A Chain A, Crystal Structure Of The Emap Ii-Like Cytokine Released
From Human Tyrosyl-Trna Synthetase
pdb|1NTG|B Chain B, Crystal Structure Of The Emap Ii-Like Cytokine Released
From Human Tyrosyl-Trna Synthetase
pdb|1NTG|C Chain C, Crystal Structure Of The Emap Ii-Like Cytokine Released
From Human Tyrosyl-Trna Synthetase
pdb|1NTG|D Chain D, Crystal Structure Of The Emap Ii-Like Cytokine Released
From Human Tyrosyl-Trna Synthetase
Length = 172
Score = 189 bits (479), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 93/152 (61%), Positives = 116/152 (76%), Gaps = 1/152 (0%)
Query: 364 ESDIIAPHRLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANR 423
E + + P RLDIRVGKI+ V +HPDA++LYVEKID+GE PRT+VSGLV +V + ++ +R
Sbjct: 1 EPEEVIPSRLDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDR 60
Query: 424 LVVVLCNLKPAKMRGIESAGMVLCASVEEEGNKKVEPLFVPPSSKAGDKIVVEGYETGAP 483
LVVVLCNLKP KMRG+ES GM+LCAS+E N++VEPL P S G+ + V+GYE G P
Sbjct: 61 LVVVLCNLKPQKMRGVESQGMLLCASIEGI-NRQVEPLDPPAGSAPGEHVFVKGYEKGQP 119
Query: 484 DEILNPKKKVWEKLQVDLKTSSEGIAQWQGFN 515
DE L PKKKV+EKLQ D K S E IAQW+ N
Sbjct: 120 DEELKPKKKVFEKLQADFKISEECIAQWKQTN 151
>pdb|1J1U|A Chain A, Crystal Structure Of Archaeal Tyrosyl-Trna Synthetase
Complexed With Trna(Tyr) And L-Tyrosine
pdb|1U7D|A Chain A, Crystal Structure Of Apo M. Jannashii Tyrosyl-Trna
Synthetase
pdb|1U7D|B Chain B, Crystal Structure Of Apo M. Jannashii Tyrosyl-Trna
Synthetase
Length = 306
Score = 171 bits (434), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 112/321 (34%), Positives = 175/321 (54%), Gaps = 20/321 (6%)
Query: 24 QLITRNLQEFLGEDRLNVILKERDLKIYWGTATTGRPHIAYFVPMSKIADFLRAGCEVTI 83
++I RN E + E+ L +LK+ + Y G +G+ H+ +++ + K+ D AG ++ I
Sbjct: 5 EMIKRNTSEIISEEELREVLKKDEKSAYIGFEPSGKIHLGHYLQIKKMIDLQNAGFDIII 64
Query: 84 LFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLSKEYTL 143
L ADLHAYL N K + + Y ++ +AM K K+V G+++QL K+YTL
Sbjct: 65 LLADLHAYL-NQKGELDEIRKIGDYNKKVFEAMG-------LKAKYVYGSEFQLDKDYTL 116
Query: 144 DVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFGGVDQRKI 203
+VYRL+ T A+++ + ++ E+P ++ ++YP +Q D YL VD GG++QRKI
Sbjct: 117 NVYRLALKTTLKRARRSMELIAREDENPKVAEVIYPIMQVNDIHYLGVDVAVGGMEQRKI 176
Query: 204 FTLAEKYLPQLGYAKRIHFMNPMVPGLAG-GKMSSSEEDSKIDXXXXXXXXXXXXXXXFC 262
LA + LP+ K + NP++ GL G GKMSSS+ + I +C
Sbjct: 177 HMLARELLPK----KVVCIHNPVLTGLDGEGKMSSSKGNF-IAVDDSPEEIRAKIKKAYC 231
Query: 263 EPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPA 322
G VE N ++ K + L P L I R E GG+L + Y+ LE +F +ELHP
Sbjct: 232 PAGVVEGNPIMEIAK---YFLEYP---LTIKRPEKFGGDLTVNSYEELESLFKNKELHPM 285
Query: 323 DLKAAAEFYINRLLEPIRKKF 343
DLK A + ++LEPIRK+
Sbjct: 286 DLKNAVAEELIKILEPIRKRL 306
>pdb|1ZH6|A Chain A, Crystal Structure Of P-Acetylphenylalanine-Trna Synthetase
In Complex With P-Acetylphenylalanine
Length = 314
Score = 164 bits (414), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 109/321 (33%), Positives = 172/321 (53%), Gaps = 20/321 (6%)
Query: 24 QLITRNLQEFLGEDRLNVILKERDLKIYWGTATTGRPHIAYFVPMSKIADFLRAGCEVTI 83
++I RN E + E+ L +LK+ + G +G+ H+ +++ + K+ D AG ++ I
Sbjct: 5 EMIKRNTSEIISEEELREVLKKDEKSALIGFEPSGKIHLGHYLQIKKMIDLQNAGFDIII 64
Query: 84 LFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLSKEYTL 143
L ADLHAYL N K + + Y ++ +AM K K+V G+++QL K+YTL
Sbjct: 65 LLADLHAYL-NQKGELDEIRKIGDYNKKVFEAMG-------LKAKYVYGSEFQLDKDYTL 116
Query: 144 DVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFGGVDQRKI 203
+VYRL+ T A+++ + ++ E+P ++ ++YP +Q Y VD GG++QRKI
Sbjct: 117 NVYRLALKTTLKRARRSMELIAREDENPKVAEVIYPIMQVNGCHYRGVDVAVGGMEQRKI 176
Query: 204 FTLAEKYLPQLGYAKRIHFMNPMVPGLAG-GKMSSSEEDSKIDXXXXXXXXXXXXXXXFC 262
LA + LP+ K + NP++ GL G GKMSSS+ + I +C
Sbjct: 177 HMLARELLPK----KVVCIHNPVLTGLDGEGKMSSSKGNF-IAVDDSPEEIRAKIKKAYC 231
Query: 263 EPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPA 322
G VE N ++ K + L P L I R E GG+L + Y+ LE +F +ELHP
Sbjct: 232 PAGVVEGNPIMEIAK---YFLEYP---LTIKRPEKFGGDLTVNSYEELESLFKNKELHPM 285
Query: 323 DLKAAAEFYINRLLEPIRKKF 343
DLK A + ++LEPIRK+
Sbjct: 286 DLKNAVAEELIKILEPIRKRL 306
>pdb|1ZH0|A Chain A, Crystal Structure Of L-3-(2-Napthyl)alanine-Trna
Synthetase In Complex With L-3-(2-Napthyl)alanine
Length = 314
Score = 162 bits (411), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 109/321 (33%), Positives = 171/321 (53%), Gaps = 20/321 (6%)
Query: 24 QLITRNLQEFLGEDRLNVILKERDLKIYWGTATTGRPHIAYFVPMSKIADFLRAGCEVTI 83
++I RN E + E+ L +LK+ + G +G+ H+ +++ + K+ D AG ++ I
Sbjct: 5 EMIKRNTSEIISEEELREVLKKDEKSALIGFEPSGKIHLGHYLQIKKMIDLQNAGFDIII 64
Query: 84 LFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLSKEYTL 143
L ADLHAYL N K + + Y ++ +AM K K+V G+ +QL K+YTL
Sbjct: 65 LLADLHAYL-NQKGELDEIRKIGDYNKKVFEAMG-------LKAKYVYGSSFQLDKDYTL 116
Query: 144 DVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFGGVDQRKI 203
+VYRL+ T A+++ + ++ E+P ++ ++YP +Q Y VD GG++QRKI
Sbjct: 117 NVYRLALKTTLKRARRSMELIAREDENPKVAEVIYPIMQVNPAHYQGVDVVVGGMEQRKI 176
Query: 204 FTLAEKYLPQLGYAKRIHFMNPMVPGLAG-GKMSSSEEDSKIDXXXXXXXXXXXXXXXFC 262
LA + LP+ K + NP++ GL G GKMSSS+ + I +C
Sbjct: 177 HMLARELLPK----KVVCIHNPVLTGLDGEGKMSSSKGNF-IAVDDSPEEIRAKIKKAYC 231
Query: 263 EPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPA 322
G VE N ++ K + L P L I R E GG+L + Y+ LE +F +ELHP
Sbjct: 232 PAGVVEGNPIMEIAK---YFLEYP---LTIKRPEKFGGDLTVNSYEELESLFKNKELHPM 285
Query: 323 DLKAAAEFYINRLLEPIRKKF 343
DLK A + ++LEPIRK+
Sbjct: 286 DLKNAVAEELIKILEPIRKRL 306
>pdb|3QE4|A Chain A, An Evolved Aminoacyl-Trna Synthetase With Atypical
Polysubstrate Specificity
pdb|3QE4|B Chain B, An Evolved Aminoacyl-Trna Synthetase With Atypical
Polysubstrate Specificity
Length = 312
Score = 162 bits (411), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 108/321 (33%), Positives = 172/321 (53%), Gaps = 20/321 (6%)
Query: 24 QLITRNLQEFLGEDRLNVILKERDLKIYWGTATTGRPHIAYFVPMSKIADFLRAGCEVTI 83
++I RN E + E+ L +LK+ + G +G+ H+ +++ + K+ D AG ++ I
Sbjct: 5 EMIKRNTSEIISEEELREVLKKDEKSALIGFEPSGKIHLGHYLQIKKMIDLQNAGFDIII 64
Query: 84 LFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLSKEYTL 143
+ ADLHAYL N K + + Y ++ +AM K K+V G+++ L K+YTL
Sbjct: 65 VLADLHAYL-NQKGELDEIRKIGDYNKKVFEAMG-------LKAKYVYGSEWMLDKDYTL 116
Query: 144 DVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFGGVDQRKI 203
+VYRL+ T A+++ + ++ E+P ++ ++YP +Q YL VD GG++QRKI
Sbjct: 117 NVYRLALKTTLKRARRSMELIAREDENPKVAEVIYPIMQVNGAHYLGVDVAVGGMEQRKI 176
Query: 204 FTLAEKYLPQLGYAKRIHFMNPMVPGLAG-GKMSSSEEDSKIDXXXXXXXXXXXXXXXFC 262
LA + LP+ K + NP++ GL G GKMSSS+ + I +C
Sbjct: 177 HMLARELLPK----KVVCIHNPVLTGLDGEGKMSSSKGNF-IAVDDSPEEIRAKIKKAYC 231
Query: 263 EPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPA 322
G VE N ++ K + L P L I R E GG+L + Y+ LE +F +ELHP
Sbjct: 232 PAGVVEGNPIMEIAK---YFLEYP---LTIKRPEKFGGDLTVNSYEELESLFKNKELHPM 285
Query: 323 DLKAAAEFYINRLLEPIRKKF 343
DLK A + ++LEPIRK+
Sbjct: 286 DLKNAVAEELIKILEPIRKRL 306
>pdb|2ZP1|A Chain A, Structual Basis Of Iodo-Tyrosine Recognition By Engineered
Archeal Tyrosyl-Trna Synthetase
Length = 314
Score = 162 bits (410), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 109/321 (33%), Positives = 172/321 (53%), Gaps = 20/321 (6%)
Query: 24 QLITRNLQEFLGEDRLNVILKERDLKIYWGTATTGRPHIAYFVPMSKIADFLRAGCEVTI 83
++I RN E + E+ L +LK+ + Y G +G+ H+ +++ + K+ D AG ++ I
Sbjct: 5 EMIKRNTSEIISEEELREVLKKDEKSAYIGFEPSGKIHLGHYLQIKKMIDLQNAGFDIII 64
Query: 84 LFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLSKEYTL 143
L ADL AYL N K + + Y ++ +AM K K+V G+++QL K+YTL
Sbjct: 65 LLADLAAYL-NQKGELDEIRKIGDYNKKVFEAMG-------LKAKYVYGSEFQLDKDYTL 116
Query: 144 DVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFGGVDQRKI 203
+VYRL+ T A+++ + ++ E+P ++ ++YP +Q YL VD GG++QRKI
Sbjct: 117 NVYRLALKTTLKRARRSMELIAREDENPKVAEVIYPIMQVNTSHYLGVDVAVGGMEQRKI 176
Query: 204 FTLAEKYLPQLGYAKRIHFMNPMVPGLAG-GKMSSSEEDSKIDXXXXXXXXXXXXXXXFC 262
LA + LP+ K + NP++ GL G GKMSSS+ + I +C
Sbjct: 177 HMLARELLPK----KVVCIHNPVLTGLDGEGKMSSSKGNF-IAVDDSPEEIRAKIKKAYC 231
Query: 263 EPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPA 322
G VE N ++ K + L P L I R E GG+L + Y+ LE +F +ELHP
Sbjct: 232 PAGVVEGNPIMEIAK---YFLEYP---LTIKRPEKFGGDLTVNSYEELESLFKNKELHPM 285
Query: 323 DLKAAAEFYINRLLEPIRKKF 343
LK A + ++LEPIRK+
Sbjct: 286 YLKNAVAEELIKILEPIRKRL 306
>pdb|2HGZ|A Chain A, Crystal Structure Of A P-Benzoyl-L-Phenylalanyl-Trna
Synthetase
Length = 306
Score = 162 bits (409), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 109/321 (33%), Positives = 171/321 (53%), Gaps = 20/321 (6%)
Query: 24 QLITRNLQEFLGEDRLNVILKERDLKIYWGTATTGRPHIAYFVPMSKIADFLRAGCEVTI 83
++I RN E + E+ L +LK+ + G +G+ H+ +++ + K+ D AG ++ I
Sbjct: 4 EMIKRNTSEIISEEELREVLKKDEKSAGIGFEPSGKIHLGHYLQIKKMIDLQNAGFDIII 63
Query: 84 LFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLSKEYTL 143
L ADLHAYL N K + + Y ++ +AM K K+V G+ +QL K+YTL
Sbjct: 64 LLADLHAYL-NQKGELDEIRKIGDYNKKVFEAMG-------LKAKYVYGSPFQLDKDYTL 115
Query: 144 DVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFGGVDQRKI 203
+VYRL+ T A+++ + ++ E+P ++ ++YP +Q L VD GG++QRKI
Sbjct: 116 NVYRLALKTTLKRARRSMELIAREDENPKVAEVIYPIMQVNTSHRLGVDVAVGGMEQRKI 175
Query: 204 FTLAEKYLPQLGYAKRIHFMNPMVPGLAG-GKMSSSEEDSKIDXXXXXXXXXXXXXXXFC 262
LA + LP+ K + NP++ GL G GKMSSS+ + I +C
Sbjct: 176 HMLARELLPK----KVVMIHNPVLTGLDGEGKMSSSKGNF-IAVDDSPEEIRAKIKKAYC 230
Query: 263 EPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPA 322
G VE N ++ K + L P L I R E GG+L + Y+ LE +F +ELHP
Sbjct: 231 PAGVVEGNPIMEIAK---YFLEYP---LTIKRPEKFGGDLTVNSYEELESLFKNKELHPM 284
Query: 323 DLKAAAEFYINRLLEPIRKKF 343
DLK A + ++LEPIRK+
Sbjct: 285 DLKNAVAEELIKILEPIRKRL 305
>pdb|2AG6|A Chain A, Crystal Structure Of P-Bromo-L-Phenylalanine-Trna
Sythetase In Complex With P-Bromo-L-Phenylalanine
Length = 314
Score = 162 bits (409), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 109/321 (33%), Positives = 171/321 (53%), Gaps = 20/321 (6%)
Query: 24 QLITRNLQEFLGEDRLNVILKERDLKIYWGTATTGRPHIAYFVPMSKIADFLRAGCEVTI 83
++I RN E + E+ L +LK+ + G +G+ H+ +++ + K+ D AG ++ I
Sbjct: 5 EMIKRNTSEIISEEELREVLKKDEKSALIGFEPSGKIHLGHYLQIKKMIDLQNAGFDIII 64
Query: 84 LFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLSKEYTL 143
L ADLHAYL N K + + Y ++ +AM K K+V G+ +QL K+YTL
Sbjct: 65 LLADLHAYL-NQKGELDEIRKIGDYNKKVFEAMG-------LKAKYVYGSSFQLDKDYTL 116
Query: 144 DVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFGGVDQRKI 203
+VYRL+ T A+++ + ++ E+P ++ ++YP +Q Y VD GG++QRKI
Sbjct: 117 NVYRLALKTTLKRARRSMELIAREDENPKVAEVIYPIMQVNPLHYEGVDVAVGGMEQRKI 176
Query: 204 FTLAEKYLPQLGYAKRIHFMNPMVPGLAG-GKMSSSEEDSKIDXXXXXXXXXXXXXXXFC 262
LA + LP+ K + NP++ GL G GKMSSS+ + I +C
Sbjct: 177 HMLARELLPK----KVVCIHNPVLTGLDGEGKMSSSKGNF-IAVDDSPEEIRAKIKKAYC 231
Query: 263 EPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPA 322
G VE N ++ K + L P L I R E GG+L + Y+ LE +F +ELHP
Sbjct: 232 PAGVVEGNPIMEIAK---YFLEYP---LTIKRPEKFGGDLTVNSYEELESLFKNKELHPM 285
Query: 323 DLKAAAEFYINRLLEPIRKKF 343
DLK A + ++LEPIRK+
Sbjct: 286 DLKNAVAEELIKILEPIRKRL 306
>pdb|1U7X|A Chain A, Crystal Structure Of A Mutant M. Jannashii Tyrosyl-Trna
Synthetase Specific For O-Methyl-Tyrosine
pdb|1U7X|B Chain B, Crystal Structure Of A Mutant M. Jannashii Tyrosyl-Trna
Synthetase Specific For O-Methyl-Tyrosine
Length = 312
Score = 161 bits (408), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 109/321 (33%), Positives = 171/321 (53%), Gaps = 20/321 (6%)
Query: 24 QLITRNLQEFLGEDRLNVILKERDLKIYWGTATTGRPHIAYFVPMSKIADFLRAGCEVTI 83
++I RN E + E+ L +LK+ + G +G+ H+ +++ + K+ D AG ++ I
Sbjct: 5 EMIKRNTSEIISEEELREVLKKDEKSAQIGFEPSGKIHLGHYLQIKKMIDLQNAGFDIII 64
Query: 84 LFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLSKEYTL 143
L ADLHAYL N K + + Y ++ +AM K K+V G+ +QL K+YTL
Sbjct: 65 LLADLHAYL-NQKGELDEIRKIGDYNKKVFEAMG-------LKAKYVYGSTFQLDKDYTL 116
Query: 144 DVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFGGVDQRKI 203
+VYRL+ T A+++ + ++ E+P ++ ++YP +Q Y VD GG++QRKI
Sbjct: 117 NVYRLALKTTLKRARRSMELIAREDENPKVAEVIYPIMQVNAIHYPGVDVAVGGMEQRKI 176
Query: 204 FTLAEKYLPQLGYAKRIHFMNPMVPGLAG-GKMSSSEEDSKIDXXXXXXXXXXXXXXXFC 262
LA + LP+ K + NP++ GL G GKMSSS+ + I +C
Sbjct: 177 HMLARELLPK----KVVCIHNPVLTGLDGEGKMSSSKGNF-IAVDDSPEEIRAKIKKAYC 231
Query: 263 EPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPA 322
G VE N ++ K + L P L I R E GG+L + Y+ LE +F +ELHP
Sbjct: 232 PAGVVEGNPIMEIAK---YFLEYP---LTIKRPEKFGGDLTVNSYEELESLFKNKELHPM 285
Query: 323 DLKAAAEFYINRLLEPIRKKF 343
DLK A + ++LEPIRK+
Sbjct: 286 DLKNAVAEELIKILEPIRKRL 306
>pdb|3N2Y|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With P-(2- Tetrazolyl)-Phenylalanine
pdb|3N2Y|B Chain B, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With P-(2- Tetrazolyl)-Phenylalanine
Length = 314
Score = 158 bits (400), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 106/321 (33%), Positives = 171/321 (53%), Gaps = 20/321 (6%)
Query: 24 QLITRNLQEFLGEDRLNVILKERDLKIYWGTATTGRPHIAYFVPMSKIADFLRAGCEVTI 83
++I RN E + E+ L +LK+ + G +G+ H+ +++ + K+ D AG ++ I
Sbjct: 5 EMIKRNTSEIISEEELREVLKKDEKSALIGFEPSGKIHLGHYLQIKKMIDLQNAGFDIII 64
Query: 84 LFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLSKEYTL 143
+ ADLHAYL N K + + Y ++ +AM K K+V G+++ L K+YTL
Sbjct: 65 ILADLHAYL-NQKGELDEIRKIGDYNKKVFEAMG-------LKAKYVYGSEFMLDKDYTL 116
Query: 144 DVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFGGVDQRKI 203
+VYRL+ T A+++ + ++ E+P ++ ++YP +Q Y+ D GG++QRKI
Sbjct: 117 NVYRLALKTTLKRARRSMELIAREDENPKVAEVIYPIMQVNGIHYVGGDVAVGGMEQRKI 176
Query: 204 FTLAEKYLPQLGYAKRIHFMNPMVPGLAG-GKMSSSEEDSKIDXXXXXXXXXXXXXXXFC 262
LA + LP+ K + NP++ GL G GKMSSS+ + I +C
Sbjct: 177 HMLARELLPK----KVVCIHNPVLTGLDGEGKMSSSKGNF-IAVDDSPEEIRAKIKKAYC 231
Query: 263 EPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPA 322
G VE N ++ K + L P L I R E GG+L + Y+ LE +F +ELHP
Sbjct: 232 PAGVVEGNPIMEIAK---YFLEYP---LTIKRPEKFGGDLTVNSYEELESLFKNKELHPM 285
Query: 323 DLKAAAEFYINRLLEPIRKKF 343
DLK A + ++LEPIRK+
Sbjct: 286 DLKNAVAEELIKILEPIRKRL 306
>pdb|3D6U|A Chain A, Crystal Structure Of 4-(Trifluoromethyldiazirinyl)
Phenylalanyl-Trna Synthetase
pdb|3D6V|A Chain A, Crystal Structure Of 4-(Trifluoromethyldiazirinyl)
Phenylalanyl-Trna Synthetase
Length = 314
Score = 155 bits (393), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 107/321 (33%), Positives = 169/321 (52%), Gaps = 20/321 (6%)
Query: 24 QLITRNLQEFLGEDRLNVILKERDLKIYWGTATTGRPHIAYFVPMSKIADFLRAGCEVTI 83
++I RN E + E+ L +LK+ + G +G+ H+ +++ + K+ D AG ++ I
Sbjct: 5 EMIKRNTSEIISEEELREVLKKDEKSAIIGFEPSGKIHLGHYLQIKKMIDLQNAGFDIII 64
Query: 84 LFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLSKEYTL 143
L ADL AYL N K + + Y ++ +AM K K+V G+ + L K+YTL
Sbjct: 65 LLADLFAYL-NQKGELDEIRKIGDYNKKVFEAMG-------LKAKYVYGSSFMLDKDYTL 116
Query: 144 DVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFGGVDQRKI 203
+VYRL+ T A+++ + ++ E+P ++ ++YP +Q Y VD GG++QRKI
Sbjct: 117 NVYRLALKTTLKRARRSMELIAREDENPKVAEVIYPIMQVNPLHYEGVDVAVGGMEQRKI 176
Query: 204 FTLAEKYLPQLGYAKRIHFMNPMVPGLAG-GKMSSSEEDSKIDXXXXXXXXXXXXXXXFC 262
LA + LP+ K + NP++ GL G GKMSSS+ + I +C
Sbjct: 177 HMLARELLPK----KVVCIHNPVLTGLDGEGKMSSSKGNF-IAVDDSPEEIRAKIKKAYC 231
Query: 263 EPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPA 322
G VE N ++ K + L P L I R E GG+L + Y+ LE +F +ELHP
Sbjct: 232 PAGVVEGNPIMEIAK---YFLEYP---LTIKRPEKFGGDLTVNSYEELESLFKNKELHPM 285
Query: 323 DLKAAAEFYINRLLEPIRKKF 343
DLK A + ++LEPIRK+
Sbjct: 286 DLKNAVAEELIKILEPIRKRL 306
>pdb|2PXH|A Chain A, Crystal Structure Of A Bipyridylalanyl-Trna Synthetase
Length = 314
Score = 154 bits (390), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 106/321 (33%), Positives = 170/321 (52%), Gaps = 20/321 (6%)
Query: 24 QLITRNLQEFLGEDRLNVILKERDLKIYWGTATTGRPHIAYFVPMSKIADFLRAGCEVTI 83
++I RN E + E+ L +LK+ + G +G+ H+ +++ + K+ D AG ++ I
Sbjct: 5 EMIKRNTSEIISEEELREVLKKDEKSAGIGFEPSGKIHLGHYLQIKKMIDLQNAGFDIII 64
Query: 84 LFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLSKEYTL 143
ADL AYL N K + + Y ++ +AM K K+V G+++QL K+YTL
Sbjct: 65 YLADLAAYL-NQKGELDEIRKIGDYNKKVFEAMG-------LKAKYVYGSEFQLDKDYTL 116
Query: 144 DVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFGGVDQRKI 203
+VYRL+ T A+++ + ++ E+P ++ ++YP ++ Y VD GG++QRKI
Sbjct: 117 NVYRLALKTTLKRARRSMELIAREDENPKVAEVIYPIMEVNGWHYSGVDVAVGGMEQRKI 176
Query: 204 FTLAEKYLPQLGYAKRIHFMNPMVPGLAG-GKMSSSEEDSKIDXXXXXXXXXXXXXXXFC 262
LA + LP+ K + NP++ GL G GKMSSS+ + I +C
Sbjct: 177 HMLARELLPK----KVVCIHNPVLTGLDGEGKMSSSKGNF-IAVDDSPEEIRAKIKKAYC 231
Query: 263 EPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPA 322
G VE N ++ K + L P L I R E GG+L + Y+ LE +F +ELHP
Sbjct: 232 PAGVVEGNPIMEIAK---YFLEYP---LTIKRPEKFGGDLTVNSYEELESLFKNKELHPM 285
Query: 323 DLKAAAEFYINRLLEPIRKKF 343
DLK A + ++LEPIRK+
Sbjct: 286 DLKNAVAEELIKILEPIRKRL 306
>pdb|1E7Z|A Chain A, Crystal Structure Of The Emap2RNA BINDING DOMAIN OF THE
P43 Protein From Human Aminoacyl-Trna Synthetase Complex
Length = 174
Score = 154 bits (389), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/143 (52%), Positives = 103/143 (72%), Gaps = 5/143 (3%)
Query: 372 RLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCNL 431
RLD+R+G I+ +HPDA++LYVE++D+GE PRT+VSGLVN+V M NR+V++LCNL
Sbjct: 8 RLDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNL 67
Query: 432 KPAKMRGIESAGMVLCASVEEEGNKKVEPLFVPPSSKAGDKIVVEGYETGAPDEILNPKK 491
KPAKMRG+ S MV+CAS E K+E L P S GD+I + + G PD+ LNPKK
Sbjct: 68 KPAKMRGVLSQAMVMCASSPE----KIEILAPPNGSVPGDRITFDAF-PGEPDKELNPKK 122
Query: 492 KVWEKLQVDLKTSSEGIAQWQGF 514
K+WE++Q DL T+ E +A ++G
Sbjct: 123 KIWEQIQPDLHTNDECVATYKGV 145
>pdb|1FL0|A Chain A, Crystal Structure Of The Emap2RNA-Binding Domain Of The
P43 Protein From Human Aminoacyl-Trna Synthetase Complex
Length = 171
Score = 154 bits (388), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/143 (52%), Positives = 103/143 (72%), Gaps = 5/143 (3%)
Query: 372 RLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCNL 431
RLD+R+G I+ +HPDA++LYVE++D+GE PRT+VSGLVN+V M NR+V++LCNL
Sbjct: 5 RLDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNL 64
Query: 432 KPAKMRGIESAGMVLCASVEEEGNKKVEPLFVPPSSKAGDKIVVEGYETGAPDEILNPKK 491
KPAKMRG+ S MV+CAS E K+E L P S GD+I + + G PD+ LNPKK
Sbjct: 65 KPAKMRGVLSQAMVMCASSPE----KIEILAPPNGSVPGDRITFDAF-PGEPDKELNPKK 119
Query: 492 KVWEKLQVDLKTSSEGIAQWQGF 514
K+WE++Q DL T+ E +A ++G
Sbjct: 120 KIWEQIQPDLHTNDECVATYKGV 142
>pdb|1EUJ|A Chain A, A Novel Anti-Tumor Cytokine Contains A Rna-Binding Motif
Present In Aminoacyl-Trna Synthetases
pdb|1EUJ|B Chain B, A Novel Anti-Tumor Cytokine Contains A Rna-Binding Motif
Present In Aminoacyl-Trna Synthetases
Length = 166
Score = 154 bits (388), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/143 (52%), Positives = 103/143 (72%), Gaps = 5/143 (3%)
Query: 372 RLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCNL 431
RLD+R+G I+ +HPDA++LYVE++D+GE PRT+VSGLVN+V M NR+V++LCNL
Sbjct: 8 RLDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNL 67
Query: 432 KPAKMRGIESAGMVLCASVEEEGNKKVEPLFVPPSSKAGDKIVVEGYETGAPDEILNPKK 491
KPAKMRG+ S MV+CAS E K+E L P S GD+I + + G PD+ LNPKK
Sbjct: 68 KPAKMRGVLSQAMVMCASSPE----KIEILAPPNGSVPGDRITFDAF-PGEPDKELNPKK 122
Query: 492 KVWEKLQVDLKTSSEGIAQWQGF 514
K+WE++Q DL T+ E +A ++G
Sbjct: 123 KIWEQIQPDLHTNDECVATYKGV 145
>pdb|2CYA|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase From
Aeropyrum Pernix
Length = 364
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 90/345 (26%), Positives = 160/345 (46%), Gaps = 27/345 (7%)
Query: 17 LSFDEKKQLITRNLQEFLGEDRLNVILKE-RDLKIYWGTATTGRPHIAYFVPMSKIADFL 75
+ +E+ I RN E + E+ L +L +K Y G +G HI + V M K+ D +
Sbjct: 4 VDVEERFNRIARNTVEIVTEEELKGLLASGARIKGYIGYEPSGVAHIGWLVWMYKVKDLV 63
Query: 76 RAGCEVTILFADLHAYL-DNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTD 134
AG + ++L A HAY+ D + +L+ + ++ ++E+ VP+ +++FV +
Sbjct: 64 EAGVDFSVLEATWHAYINDKLGGDMDLIRAAARI----VRRVMEAAGVPVERVRFVDAEE 119
Query: 135 YQLSKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLL--SGLLYPGLQALDEEYLKVD 192
K+Y V R++ + ++A + ++ E + S L+YP +Q D Y+ +D
Sbjct: 120 LASDKDYWGLVIRVAKRASLARVRRALTIMGRRAEEAEVDASKLIYPLMQVSDIFYMDLD 179
Query: 193 AQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMV-----PG------------LAGGKM 235
GG+DQRK LA +LG K + P++ PG LA KM
Sbjct: 180 IALGGMDQRKAHMLARDVAEKLGRKKPVAIHTPIISSLQGPGRMEASQGEIDDVLAEVKM 239
Query: 236 SSSEEDSKIDXXXXXXXXXXXXXXXFCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRD 295
S S+ ++ + +C V+ N VL ++++F+ + G L + R
Sbjct: 240 SKSKPETAVFVVDSDDDIRRKIRKAYCPAKQVQGNPVLEIARYILFA--RDGFTLRVDRP 297
Query: 296 ENNGGNLNFSDYQSLEQVFAKQELHPADLKAAAEFYINRLLEPIR 340
GG + ++ Y+ LE+ + LHP DLK A + ++ PIR
Sbjct: 298 AKYGGPVEYTSYEELERDYTDGRLHPLDLKNAVAESLIEVVRPIR 342
>pdb|3VGJ|A Chain A, Crystal Of Plasmodium Falciparum Tyrosyl-Trna Synthetase
(Pftyrrs)in Complex With Adenylate Analog
pdb|3VGJ|B Chain B, Crystal Of Plasmodium Falciparum Tyrosyl-Trna Synthetase
(Pftyrrs)in Complex With Adenylate Analog
Length = 373
Score = 109 bits (272), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 99/332 (29%), Positives = 158/332 (47%), Gaps = 21/332 (6%)
Query: 32 EFLGEDRLNV-ILKERDLKIYWGTATTGRPHIAYFVPMSKIADFLRA-GCEVTILFADLH 89
E + D L V +L +R L Y G +GR HIA + S I + L + GC AD
Sbjct: 40 ECIQPDELRVKLLLKRKLICYDGFEPSGRMHIAQGLLKSIIVNKLTSNGCTFIFWIADWF 99
Query: 90 AYLDN-MKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLSK---EYTLDV 145
A+L+N M + + Y+ E K S + + ++F+ ++ +++K EY V
Sbjct: 100 AHLNNKMSGDLKKIKKVGSYFIEVWK----SCGMNMENVQFLWASE-EINKKPNEYWSLV 154
Query: 146 YRLSSVITEHDAKKAGAEVVK-QVEHPLLSGLLYPGLQALDEEYLKVDAQFGGVDQRKIF 204
+S + K+ + + + E S +LYP +Q D +L VD G+DQRK+
Sbjct: 155 LDISRSFNINRMKRCLKIMGRSEGEENYCSQILYPCMQCADIFFLNVDICQLGIDQRKVN 214
Query: 205 TLAEKYLPQLGYAKR-IHFMNPMVPGLAGG--KMSSSEEDSKIDXXXXXXXXXXXXXXXF 261
LA +Y K+ + + M+PGL G KMS S+E+S I +
Sbjct: 215 MLAREYCDIKKIKKKPVILSHGMLPGLLEGQEKMSKSDENSAIFMDDSESDVNRKIKKAY 274
Query: 262 CEPGNVEDNGVLSFLKHVVFSLLKPGEN-LVITRDENNGGNLNFSDYQSLEQVFAKQELH 320
C P +E+N + ++ K ++F P N + R E NGG+ + Q LE + +H
Sbjct: 275 CPPNVIENNPIYAYAKSIIF----PSYNEFNLVRKEKNGGDKTYYTLQELEHDYVNGFIH 330
Query: 321 PADLKAAAEFYINRLLEPIRKKFESK-ELKDL 351
P DLK YIN+LL+P+R F++ E K+L
Sbjct: 331 PLDLKDNVAMYINKLLQPVRDHFQNNIEAKNL 362
>pdb|2CYC|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With L-Tyrosine From Pyrococcus Horikoshii
pdb|2CYC|B Chain B, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed
With L-Tyrosine From Pyrococcus Horikoshii
Length = 375
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/328 (25%), Positives = 149/328 (45%), Gaps = 33/328 (10%)
Query: 48 LKIYWGTATTGRPHIAY-FVPMSKIADFLRAGCEVTILFADLHAYL-DNMKAPWELLA-L 104
L+ Y G +G H+ + +KIADF +AG + + AD H+++ D + E++ +
Sbjct: 34 LQHYIGFEISGYIHLGTGLMAGAKIADFQKAGIKTRVFLADWHSWINDKLGGDLEVIQEV 93
Query: 105 RTKYYEESIKAMLESIDVPISKLKFVKGTDYQLSKEYTLDVYRLSSVITEHDAKKAGAEV 164
KY++ ++ +E + K++FV ++ +Y V +S +T ++ +
Sbjct: 94 ALKYFKVGMEKSIEVMGGDPKKVEFVLASEILEKGDYWQTVIDISKNVTLSRVMRSITIM 153
Query: 165 VKQVEHPL-LSGLLYPGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFM 223
+Q+ + + L+YP +Q D Y V G+DQRK +A + +L Y +H
Sbjct: 154 GRQMGEAIDFAKLIYPMMQVADIFYQGVTIAHAGMDQRKAHVIAIEVAQKLRYHPIVHEG 213
Query: 224 NPMVP---------GL------------------AGGKMSSSEEDSKIDXXXXXXXXXXX 256
+ P GL A KMS S+ S +
Sbjct: 214 EKLKPVAVHHHLLLGLQEPPKWPIESEEEFKEIKAQMKMSKSKPYSAVFIHDSPEEIRQK 273
Query: 257 XXXXFCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAK 316
FC V N VL ++++++F +P E + R GG++ ++ ++ L++ FA+
Sbjct: 274 LRKAFCPAREVRYNPVLDWVEYIIFRE-EPTE-FTVHRPAKFGGDVTYTTFEELKRDFAE 331
Query: 317 QELHPADLKAAAEFYINRLLEPIRKKFE 344
+LHP DLK A Y+ LLEPIR+ FE
Sbjct: 332 GKLHPLDLKNAVAEYLINLLEPIRRYFE 359
>pdb|1RQG|A Chain A, Methionyl-Trna Synthetase From Pyrococcus Abyssi
Length = 722
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
Query: 372 RLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCNL 431
+LD+RVGKI+EV HP+A+ LYV K+DLG+E RT+V+GL Y K ++ NR VVV+ NL
Sbjct: 625 KLDLRVGKIIEVKDHPNADKLYVVKVDLGDE-VRTLVAGLKKYYKPEELLNRYVVVVANL 683
Query: 432 KPAKMRGIESAGMVLCA 448
+P K+RGI S GM+L A
Sbjct: 684 EPKKLRGIGSQGMLLAA 700
>pdb|1MKH|A Chain A, C-Terminal Domain Of Methionyl-Trna Synthetase From
Pyrococcus Abyssi
Length = 107
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/78 (56%), Positives = 59/78 (75%), Gaps = 1/78 (1%)
Query: 372 RLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCNL 431
+LD+RVGKI+EV HP+A+ LYV K+DLG+E RT+V+GL Y K ++ NR VVV+ NL
Sbjct: 10 KLDLRVGKIIEVKDHPNADKLYVVKVDLGDE-VRTLVAGLKKYYKPEELLNRYVVVVANL 68
Query: 432 KPAKMRGIESAGMVLCAS 449
+P K+RGI S GM+L A
Sbjct: 69 EPKKLRGIGSQGMLLAAD 86
>pdb|3P0J|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|C Chain C, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
pdb|3P0J|D Chain D, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Triclinic Crystal Form 1
Length = 690
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 96/358 (26%), Positives = 155/358 (43%), Gaps = 44/358 (12%)
Query: 17 LSFDEKKQLITRNLQEFLGEDRL-NVILKERDLKIYWGTATTGRPHIAYFV-PMSKIADF 74
++ DE+ +L+ +E + E L N+I K+ ++ Y G +GR HIA + +
Sbjct: 9 MNTDERYKLLRSVGEECIQESELRNLIEKKPLIRCYDGFEPSGRMHIAQGIFKAVNVNKC 68
Query: 75 LRAGCEVTILFADLHAYL-DNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGT 133
AGCE AD A + D + E + + +Y E KA +D K+ F+ +
Sbjct: 69 TAAGCEFVFWVADWFALMNDKVGGELEKIRIVGRYLIEVWKAAGMDMD----KVLFLWSS 124
Query: 134 DYQLSKEYT-----LDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSG-LLYPGLQALDEE 187
+ S T LD+ R +++ K ++ + E L + +LYP +Q D
Sbjct: 125 EEITSHADTYWRMVLDIGRQNTIAR----IKKCCTIMGKTEGTLTAAQVLYPLMQCCDIF 180
Query: 188 YLKVDAQFGGVDQRKIFTLAEKYLPQLGYA-KRIHFMNPMVPGLAGG--KMSSSEEDSKI 244
+LK D G+DQRK+ LA +Y +G K + + M+ GL G KMS S+ DS I
Sbjct: 181 FLKADICQLGLDQRKVNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAI 240
Query: 245 DXXXXXXXXXXXXXXXFC-----EPGNVEDNG----------VLSFLKHVVFSLLKPGEN 289
+C + D+G VL + + VV++ +PG
Sbjct: 241 FMEDTEEDVARKIRQAYCPRVKQSASAITDDGAPVATDDRNPVLDYFQCVVYA--RPGAA 298
Query: 290 LVITRDENNGGNLNFSDYQSLEQVFAKQELHPADLKAAAEFYINRLLEPIRKKFESKE 347
I ++ Y+ LEQ F E+ LK+ +N LLEP+R+ F S E
Sbjct: 299 ATID-------GTTYATYEDLEQAFVSDEVSEDALKSCLIDEVNALLEPVRQHFASNE 349
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 266 NVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPADLK 325
N E N V+S +H LL L I R E NGGN++++ ++L LHPADLK
Sbjct: 595 NEEANPVISVAQH----LLAQHGALSIERGEANGGNVSYNTPEALVADCGSGALHPADLK 650
Query: 326 AA 327
AA
Sbjct: 651 AA 652
>pdb|3ERS|X Chain X, Crystal Structure Of E. Coli Trbp111
Length = 118
Score = 81.3 bits (199), Expect = 1e-15, Method: Composition-based stats.
Identities = 40/81 (49%), Positives = 59/81 (72%), Gaps = 1/81 (1%)
Query: 372 RLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCNL 431
RL++RVGKIVEV RH +A+ LY+ ++D+G++ +T+ S LV Y E ++ + VVVLCNL
Sbjct: 11 RLEMRVGKIVEVKRHENADKLYIVQVDVGQKTLQTVTS-LVPYYSEEELMGKTVVVLCNL 69
Query: 432 KPAKMRGIESAGMVLCASVEE 452
+ AKMRG S M+LCA ++
Sbjct: 70 QKAKMRGETSECMLLCAETDD 90
>pdb|3P0H|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Fisetin, Cubic Crystal Form
pdb|3P0H|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Fisetin, Cubic Crystal Form
pdb|3P0I|A Chain A, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Cubic Crystal Form
pdb|3P0I|B Chain B, Leishmania Major Tyrosyl-Trna Synthetase In Complex With
Tyrosinol, Cubic Crystal Form
Length = 690
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 99/356 (27%), Positives = 150/356 (42%), Gaps = 46/356 (12%)
Query: 20 DEKKQLITRNLQEFLGEDRL-NVILKERDLKIYWGTATTGRPHIAYFV-PMSKIADFLRA 77
DE+ +L+ +E + E L N+I K+ ++ Y G +GR HIA + + A
Sbjct: 12 DERYKLLRSVGEECIQESELRNLIEKKPLIRCYDGFEPSGRXHIAQGIFKAVNVNKCTAA 71
Query: 78 GCEVTILFADLHAYLDNMKAPWELLALRT--KYYEESIKAMLESIDVPISKLKFVKGTDY 135
GCE AD A L N K EL +R +Y E KA D K+ F+ ++
Sbjct: 72 GCEFVFWVADWFA-LXNDKVGGELEKIRIVGRYLIEVWKAAGXDXD----KVLFLWSSEE 126
Query: 136 QLSKEYT-----LDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSG-LLYPGLQALDEEYL 189
S T LD+ R +++ K + + E L + +LYP Q D +L
Sbjct: 127 ITSHADTYWRXVLDIGRQNTIAR----IKKCCTIXGKTEGTLTAAQVLYPLXQCCDIFFL 182
Query: 190 KVDAQFGGVDQRKIFTLAEKYLPQLGYA-KRIHFMNPMVPGLAGG--KMSSSEEDSKIDX 246
K D G+DQRK+ LA +Y +G K + + + GL G K S S+ DS I
Sbjct: 183 KADICQLGLDQRKVNXLAREYCDLIGRKLKPVILSHHXLAGLKQGQAKXSKSDPDSAIFX 242
Query: 247 XXXXXXXXXXXXXXFC-----EPGNVEDNG----------VLSFLKHVVFSLLKPGENLV 291
+C + D+G VL + + VV++ +PG
Sbjct: 243 EDTEEDVARKIRQAYCPRVKQSASAITDDGAPVATDDRNPVLDYFQCVVYA--RPGAAAT 300
Query: 292 ITRDENNGGNLNFSDYQSLEQVFAKQELHPADLKAAAEFYINRLLEPIRKKFESKE 347
I ++ Y+ LEQ F E+ LK+ +N LLEP+R+ F S E
Sbjct: 301 ID-------GTTYATYEDLEQAFVSDEVSEDALKSCLIDEVNALLEPVRQHFASNE 349
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 266 NVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPADLK 325
N E N V+S +H LL L I R E NGGN++++ ++L LHPADLK
Sbjct: 595 NEEANPVISVAQH----LLAQHGALSIERGEANGGNVSYNTPEALVADCGSGALHPADLK 650
Query: 326 AA 327
AA
Sbjct: 651 AA 652
>pdb|2J5B|A Chain A, Structure Of The Tyrosyl Trna Synthetase From Acanthamoeba
Polyphaga Mimivirus Complexed With Tyrosynol
pdb|2J5B|B Chain B, Structure Of The Tyrosyl Trna Synthetase From Acanthamoeba
Polyphaga Mimivirus Complexed With Tyrosynol
Length = 348
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 80/345 (23%), Positives = 146/345 (42%), Gaps = 47/345 (13%)
Query: 37 DRLNVILKE-RDLKIYWGTATTGRPHIAY-FVPMSKIADFLRAGCEVTILFADLHAYLDN 94
DRL ++ R Y G +GR HIA + + + + G ++ I AD A + N
Sbjct: 29 DRLKQLVDSGRIFTAYNGFEPSGRIHIAQALITVMNTNNMIECGGQMIIYIADWFAKM-N 87
Query: 95 MKAPWELLALRT--KYYEESIKAMLESIDVPISKLKFVKGTDYQLSK----EYTLDVYRL 148
+K ++ +R +Y+ E KA + + +F+ +++ S E LD+
Sbjct: 88 LKMNGDINKIRELGRYFIEVFKA----CGINLDGTRFIWASEFIASNPSYIERMLDIAEF 143
Query: 149 SSVITEHDAKKAGAEVVKQVEHPLL--SGLLYPGLQALDEEYL---KVDAQFGGVDQRKI 203
S++ K +++ + E L S + YP +QA D L +D G+DQRK+
Sbjct: 144 STI----SRVKRCCQIMGRNESDCLKASQIFYPCMQAADVFELVPEGIDICQLGIDQRKV 199
Query: 204 FTLAEKYLPQLGYAKRIHFMNPMVPGLAG--GKMSSSEEDSKIDXXXXXXXXXXXXXXXF 261
LA +Y G I + M+ L+G KMS S+ I +
Sbjct: 200 NMLAIEYANDRGLKIPISLSHHMLMSLSGPKKKMSKSDPQGAIFMDDTEQEVSEKISRAY 259
Query: 262 CEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLN-----FSDYQSLEQVFAK 316
C DN + ++K+++ G LN ++D +S+++ F+
Sbjct: 260 CTDETF-DNPIFEYIKYLLLRWF---------------GTLNLCGKIYTDIESIQEDFSS 303
Query: 317 QELHPADLKAAAEFYINRLLEPIRKKFESKELKDLTSKAYPPKKP 361
++ +LK YIN +++ +R+ F+ EL +L S ++P
Sbjct: 304 --MNKRELKTDVANYINTIIDLVREHFKKPELSELLSNVKSYQQP 346
>pdb|1PYB|A Chain A, Crystal Structure Of Aquifex Aeolicus Trbp111: A Stucture-
Specific Trna Binding Protein
pdb|1PYB|B Chain B, Crystal Structure Of Aquifex Aeolicus Trbp111: A Stucture-
Specific Trna Binding Protein
pdb|1PYB|C Chain C, Crystal Structure Of Aquifex Aeolicus Trbp111: A Stucture-
Specific Trna Binding Protein
pdb|1PYB|D Chain D, Crystal Structure Of Aquifex Aeolicus Trbp111: A Stucture-
Specific Trna Binding Protein
Length = 111
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 372 RLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCNL 431
++D+RV K++ R +E L + LG+E RT+V+G+ Y ++ + +V++ NL
Sbjct: 14 KVDLRVAKVLSAERVEGSEKLLKLTLSLGDEE-RTVVAGIAKYYTPEELVGKKIVIVANL 72
Query: 432 KPAKMRGIESAGMVLCAS 449
KP K+ GIES GM+L AS
Sbjct: 73 KPRKIFGIESQGMILAAS 90
>pdb|1H3F|A Chain A, Tyrosyl-Trna Synthetase From Thermus Thermophilus
Complexed With Tyrosinol
pdb|1H3F|B Chain B, Tyrosyl-Trna Synthetase From Thermus Thermophilus
Complexed With Tyrosinol
pdb|1H3E|A Chain A, Tyrosyl-Trna Synthetase From Thermus Thermophilus
Complexed With Wild-Type Trnatyr(Gua) And With Atp And
Tyrosinol
Length = 432
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 106/244 (43%), Gaps = 41/244 (16%)
Query: 20 DEKKQLITRNLQEFLGEDRLNVILKE-RDLKIYWGTATTGRP--HIAYFVPMSKIADFLR 76
+E L+ R +E + E+ L LKE R L + G T RP H+ + V + K+ F
Sbjct: 9 EEALALLKRGAEEIVPEEELLAKLKEGRPLTVKLGADPT-RPDLHLGHAVVLRKMRQFQE 67
Query: 77 AGCEVTILFADLHAYLDN------MKAPWELLALR--TKYYEESIKAMLESIDVPISKLK 128
G +V ++ D + + + P L R K Y +L + + +L+
Sbjct: 68 LGHKVVLIIGDFTGMIGDPSGRSKTRPPLTLEETRENAKTYVAQAGKILRQ-EPHLFELR 126
Query: 129 F----VKGTDYQLSKEYTLDVYRLSSVIT------EHDAKK---AGAEVVKQVEHPLLSG 175
+ ++G ++ +V RL+S++T D KK AG + L
Sbjct: 127 YNSEWLEGLTFK-------EVVRLTSLMTVAQMLEREDFKKRYEAGIPIS-------LHE 172
Query: 176 LLYPGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGG-K 234
LLYP QA D ++ D + GG DQR + + G + ++ F+ P++ GL G K
Sbjct: 173 LLYPFAQAYDSVAIRADVEMGGTDQRFNLLVGREVQRAYGQSPQVCFLMPLLVGLDGREK 232
Query: 235 MSSS 238
MS S
Sbjct: 233 MSKS 236
>pdb|2CWP|A Chain A, Crystal Structure Of Metrs Related Protein From Pyrococcus
Horikoshii
Length = 112
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
Query: 372 RLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCNL 431
+ ++VG + + + + L +D G E RTIV+G+ + + ++ + + + NL
Sbjct: 14 KFQMKVGLVKKAEKIKRTKKLIKLIVDFGNEE-RTIVTGIADQIPPEELEGKKFIFVVNL 72
Query: 432 KPAKMRGIESAGMVLCASVEEEGNKKVEPLFVPPSSKAGDKI 473
KP K G+ES GM++ A E + KV + VP G ++
Sbjct: 73 KPKKFSGVESQGMLILAETE---DGKVYLIPVPEEVPVGARV 111
>pdb|2E8G|A Chain A, The Structure Of Protein From P. Horikoshii At 1.7
Angstrom Resolution
pdb|2E8G|B Chain B, The Structure Of Protein From P. Horikoshii At 1.7
Angstrom Resolution
Length = 241
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 373 LDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCNLK 432
+DI VG+++ V +HP A+ L V +++GE + + L VKEG NR+ V L L
Sbjct: 136 VDIVVGEVMSVGKHPSADRLLVTNVNIGERAVTVVTNDLT--VKEG---NRVAVAL--LP 188
Query: 433 PAKMRGIESAGMVLCAS 449
P GI S GM L A
Sbjct: 189 PRNFFGIVSEGMFLGAG 205
>pdb|2RHS|B Chain B, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
pdb|2RHS|D Chain D, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
Length = 800
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 52/103 (50%), Gaps = 17/103 (16%)
Query: 363 VESDIIAPHRLDIR---VGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGD 419
+E D + + DI+ VG I +HPDA+ L + ++D+GEE P IV G N D
Sbjct: 30 IEVDNMIDYSKDIKNLVVGYIQSKEKHPDADKLNICQVDIGEEEPVQIVCGAPNV----D 85
Query: 420 MANRLVVVLCN--------LKPAKMRGIESAGMVLCASVEEEG 454
++V +K AK+RG S GM+ C S++E G
Sbjct: 86 AGQHVIVAKVGGRLPGGIKIKRAKLRGERSEGMI-C-SLQEIG 126
>pdb|3FOC|A Chain A, Tryptophanyl-Trna Synthetase From Giardia Lamblia
pdb|3FOC|B Chain B, Tryptophanyl-Trna Synthetase From Giardia Lamblia
Length = 451
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 197 GVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGL--AGGKMSSSEEDSKI 244
G++Q F LA P++G+ K + + +PGL +G KMS+S+ +S I
Sbjct: 294 GIEQDPYFRLARDLAPRMGHPKNAYLLGKFLPGLQGSGTKMSASDPNSAI 343
>pdb|2NZH|A Chain A, Crystal Structure Of A Secretion Chaperone Csaa From
Bacillus Subtilis In The Space Group P 4 21 2
pdb|2NZH|B Chain B, Crystal Structure Of A Secretion Chaperone Csaa From
Bacillus Subtilis In The Space Group P 4 21 2
pdb|2NZO|A Chain A, Crystal Structure Of A Secretion Chaperone Csaa From
Bacillus Subtilis In The Space Group P 32 2 1
pdb|2NZO|B Chain B, Crystal Structure Of A Secretion Chaperone Csaa From
Bacillus Subtilis In The Space Group P 32 2 1
pdb|2NZO|C Chain C, Crystal Structure Of A Secretion Chaperone Csaa From
Bacillus Subtilis In The Space Group P 32 2 1
pdb|2NZO|D Chain D, Crystal Structure Of A Secretion Chaperone Csaa From
Bacillus Subtilis In The Space Group P 32 2 1
Length = 113
Score = 33.9 bits (76), Expect = 0.24, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 372 RLDIRVGKIVEVSRHPDAEALYVE-KIDLGEENPRTIVSGLVN--YVKEGDMANRLVVVL 428
+LDIR G IV+ P+A ++ ID G E S + Y EG + N+ V+ +
Sbjct: 12 KLDIRTGTIVKAEEFPEARVPAIKLVIDFGTEIGIKQSSAQITKRYKPEG-LINKQVIAV 70
Query: 429 CNLKPAKMRGIESAGMVL 446
N P ++ G +S +VL
Sbjct: 71 VNFPPRRIAGFKSEVLVL 88
>pdb|3I05|A Chain A, Tryptophanyl-Trna Synthetase From Trypanosoma Brucei
pdb|3I05|B Chain B, Tryptophanyl-Trna Synthetase From Trypanosoma Brucei
Length = 395
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 197 GVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAG--GKMSSS 238
+DQ F L P+LGY K + PGL+G GKMSSS
Sbjct: 231 AIDQDPYFRLTRDIAPRLGYLKPAVIHSKFFPGLSGPKGKMSSS 274
>pdb|1GD7|A Chain A, Crystal Structure Of A Bifunctional Protein (Csaa) With
Export-Related Chaperone And Trna-Binding Activities.
pdb|1GD7|B Chain B, Crystal Structure Of A Bifunctional Protein (Csaa) With
Export-Related Chaperone And Trna-Binding Activities.
pdb|1GD7|C Chain C, Crystal Structure Of A Bifunctional Protein (Csaa) With
Export-Related Chaperone And Trna-Binding Activities.
pdb|1GD7|D Chain D, Crystal Structure Of A Bifunctional Protein (Csaa) With
Export-Related Chaperone And Trna-Binding Activities
Length = 109
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 373 LDIRVGKIVEVSRHPDA-EALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCNL 431
LD+RVG+++ H A + Y +DLG + + + + D+ RLVV NL
Sbjct: 10 LDLRVGRVLRAEPHEKARKPSYKLWVDLGPLGVKQSSAQITELYRPEDLVGRLVVCAVNL 69
Query: 432 KPAKMRGIESAGMVLCASVEEEGNKKV 458
++ G S +VL V +E + V
Sbjct: 70 GAKRVAGFLSEVLVL--GVPDEAGRVV 94
>pdb|3PCO|B Chain B, Crystal Structure Of E. Coli Phenylalanine-Trna Synthetase
Complexed With Phenylalanine And Amp
pdb|3PCO|D Chain D, Crystal Structure Of E. Coli Phenylalanine-Trna Synthetase
Complexed With Phenylalanine And Amp
Length = 795
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 383 VSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLC----NLKPAKMRG 438
++HP+A+ L V K+++G + IV G N + +A + + +K AK+RG
Sbjct: 53 CAQHPNADKLRVTKVNVGGDRLLDIVCGAPNCRQGLRVAVATIGAVLPGDFKIKAAKLRG 112
Query: 439 IESAGMVLCASVE 451
S GM LC+ E
Sbjct: 113 EPSEGM-LCSFSE 124
>pdb|2QUH|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trp
pdb|2QUI|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Tryptophanamide And Atp
pdb|2QUI|B Chain B, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Tryptophanamide And Atp
pdb|2QUJ|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trpamp
pdb|2QUK|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Atp(Putative)
pdb|2QUH|B Chain B, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trp
Length = 477
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 197 GVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGG--KMSSSEEDSKI 244
+DQ F + P++GY K + P L G KMS+S+ +S I
Sbjct: 310 AIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSI 359
>pdb|1ULH|A Chain A, A Short Peptide Insertion Crucial For Angiostatic Activity
Of Human Tryptophanyl-Trna Synthetase
pdb|1ULH|B Chain B, A Short Peptide Insertion Crucial For Angiostatic Activity
Of Human Tryptophanyl-Trna Synthetase
Length = 390
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 197 GVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGG--KMSSSEEDSKI 244
+DQ F + P++GY K + P L G KMS+S+ +S I
Sbjct: 229 AIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSI 278
>pdb|2QUJ|B Chain B, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trpamp
Length = 384
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 197 GVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGG--KMSSSEEDSKI 244
+DQ F + P++GY K + P L G KMS+S+ +S I
Sbjct: 217 AIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSI 266
>pdb|1O5T|A Chain A, Crystal Structure Of The Aminoacylation Catalytic Fragment
Of Human Tryptophanyl-Trna Synthetase
Length = 378
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 197 GVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGG--KMSSSEEDSKI 244
+DQ F + P++GY K + P L G KMS+S+ +S I
Sbjct: 217 AIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSI 266
>pdb|2AKE|A Chain A, Structure Of Human Tryptophanyl-Trna Synthetase In Complex
With Trna(Trp)
pdb|2DR2|A Chain A, Structure Of Human Tryptophanyl-trna Synthetase In Complex
With Trna(trp)
Length = 384
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 197 GVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGG--KMSSSEEDSKI 244
+DQ F + P++GY K + P L G KMS+S+ +S I
Sbjct: 217 AIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSI 266
>pdb|3HV0|A Chain A, Tryptophanyl-Trna Synthetase From Cryptosporidium Parvum
pdb|3HV0|B Chain B, Tryptophanyl-Trna Synthetase From Cryptosporidium Parvum
Length = 393
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 197 GVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGG--KMSSSEEDSKI 244
+DQ F + P+LGY K + +P L G KMS+S ++S I
Sbjct: 227 AIDQDPYFRMVRDVAPRLGYLKPSSIHSIFLPSLQGSQTKMSASVQNSSI 276
>pdb|2RHQ|B Chain B, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
Length = 795
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 13/61 (21%)
Query: 396 KIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCN--------LKPAKMRGIESAGMVLC 447
++D+GEE P IV G N D ++V +K AK+RG S GM+ C
Sbjct: 62 QVDIGEEEPVQIVCGAPNV----DAGQHVIVAKVGGRLPGGIKIKRAKLRGERSEGMI-C 116
Query: 448 A 448
+
Sbjct: 117 S 117
>pdb|3G48|A Chain A, Crystal Structure Of Chaperone Csaa Form Bacillus
Anthracis Str. Ames
pdb|3G48|B Chain B, Crystal Structure Of Chaperone Csaa Form Bacillus
Anthracis Str. Ames
Length = 112
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 373 LDIRVGKIVEVSRHPDAEALYVE-KIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCNL 431
LD+R+G + +A + +ID GE + + + D+ + +V + N
Sbjct: 13 LDLRIGTVTHAEEFKEARVPAIRLEIDFGELGMKQSSAQITKRYNPEDLIGQQIVAVVNF 72
Query: 432 KPAKMRGIESAGMVLCASVEEEGN 455
P ++ G +S +VL V E G+
Sbjct: 73 PPKRVAGFKSEVLVL-GGVPEAGD 95
>pdb|2Q2I|A Chain A, Crystal Structure Of The Protein Secretion Chaperone Csaa
From Agrobacterium Tumefaciens.
pdb|2Q2I|B Chain B, Crystal Structure Of The Protein Secretion Chaperone Csaa
From Agrobacterium Tumefaciens
Length = 116
Score = 29.3 bits (64), Expect = 5.3, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 372 RLDIRVGKIVEVSRHPDAEALYVE-KIDLGEE--NPRTIVSGLVNYVKEGDMANRLVVVL 428
++DIRVG IVE P+A ++ KID G E ++ V+Y E + R V+ +
Sbjct: 15 KVDIRVGTIVEAVPFPEARKPAIKVKIDFGPEIGIKKSSAQITVHYTPE-SLVGRQVLGV 73
Query: 429 CNLKPAKMRGIESAGMVL 446
N P ++ S + L
Sbjct: 74 VNFPPRQIGPFRSEVLTL 91
>pdb|2Q2H|A Chain A, Crystal Structure Of The Protein Secretion Chaperone Csaa
From Agrobacterium Tumefaciens With A Genetically Fused
Phage-Display Derived Peptide Substrate At The
N-Terminus.
pdb|2Q2H|B Chain B, Crystal Structure Of The Protein Secretion Chaperone Csaa
From Agrobacterium Tumefaciens With A Genetically Fused
Phage-Display Derived Peptide Substrate At The
N-Terminus
Length = 131
Score = 29.3 bits (64), Expect = 5.5, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 372 RLDIRVGKIVEVSRHPDAEALYVE-KIDLGEE--NPRTIVSGLVNYVKEGDMANRLVVVL 428
++DIRVG IVE P+A ++ KID G E ++ V+Y E + R V+ +
Sbjct: 30 KVDIRVGTIVEAVPFPEARKPAIKVKIDFGPEIGIKKSSAQITVHYTPE-SLVGRQVLGV 88
Query: 429 CNLKPAKMRGIESAGMVL 446
N P ++ S + L
Sbjct: 89 VNFPPRQIGPFRSEVLTL 106
>pdb|1RR8|C Chain C, Structural Mechanisms Of Camptothecin Resistance By
Mutations In Human Topoisomerase I
Length = 565
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 29/139 (20%), Positives = 62/139 (44%), Gaps = 8/139 (5%)
Query: 363 VESDIIAPHRLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMAN 422
+ + I+ H D+ G +V R +A +++ I + +++Y + AN
Sbjct: 368 LNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSY----NRAN 423
Query: 423 RLVVVLCNLKPAKMRGIESAGMVLCASVEEEGNKKVEPLFVPPSSKAGDKIVVEGYETGA 482
R V +LCN + A + E + M L ++ + + + S+KA K++ +
Sbjct: 424 RAVAILCNHQQAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVM----KDAK 479
Query: 483 PDEILNPKKKVWEKLQVDL 501
+++ KKK ++L+ L
Sbjct: 480 TKKVVESKKKAVQRLEEQL 498
>pdb|1LPQ|A Chain A, Human Dna Topoisomerase I (70 Kda) In Non-Covalent Complex
With A 22 Base Pair Dna Duplex Containing An 8-Oxog
Lesion
Length = 564
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 29/139 (20%), Positives = 62/139 (44%), Gaps = 8/139 (5%)
Query: 363 VESDIIAPHRLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMAN 422
+ + I+ H D+ G +V R +A +++ I + +++Y + AN
Sbjct: 367 LNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSY----NRAN 422
Query: 423 RLVVVLCNLKPAKMRGIESAGMVLCASVEEEGNKKVEPLFVPPSSKAGDKIVVEGYETGA 482
R V +LCN + A + E + M L ++ + + + S+KA K++ +
Sbjct: 423 RAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVM----KDAK 478
Query: 483 PDEILNPKKKVWEKLQVDL 501
+++ KKK ++L+ L
Sbjct: 479 TKKVVESKKKAVQRLEEQL 497
>pdb|1NH3|A Chain A, Human Topoisomerase I Ara-C Complex
Length = 563
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 29/139 (20%), Positives = 62/139 (44%), Gaps = 8/139 (5%)
Query: 363 VESDIIAPHRLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMAN 422
+ + I+ H D+ G +V R +A +++ I + +++Y + AN
Sbjct: 366 LNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSY----NRAN 421
Query: 423 RLVVVLCNLKPAKMRGIESAGMVLCASVEEEGNKKVEPLFVPPSSKAGDKIVVEGYETGA 482
R V +LCN + A + E + M L ++ + + + S+KA K++ +
Sbjct: 422 RAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVM----KDAK 477
Query: 483 PDEILNPKKKVWEKLQVDL 501
+++ KKK ++L+ L
Sbjct: 478 TKKVVESKKKAVQRLEEQL 496
>pdb|3JXE|A Chain A, Crystal Structure Of Pyrococcus Horikoshii
Tryptophanyl-Trna Synthetase In Complex With Trpamp
pdb|3JXE|B Chain B, Crystal Structure Of Pyrococcus Horikoshii
Tryptophanyl-Trna Synthetase In Complex With Trpamp
Length = 392
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 7/95 (7%)
Query: 157 AKKAGAEVVKQV----EHPLLSGLLYPGLQALDEEYLKVDAQF-GGVDQRKIFTLAEKYL 211
AKK + K V E + + +P +Q + + +DQ + L +
Sbjct: 169 AKKINFSMAKAVFGFTEQSKIGMIFFPAIQIAPTFFERKRCLIPAAIDQDPYWRLQRDFA 228
Query: 212 PQLGYAKRIHFMNPMVPGLA--GGKMSSSEEDSKI 244
LGY K + VP L GKMS+S+ ++ I
Sbjct: 229 ESLGYYKTAALHSKFVPSLTSLSGKMSASKPETAI 263
>pdb|1RRJ|A Chain A, Structural Mechanisms Of Camptothecin Resistance By
Mutations In Human Topoisomerase I
Length = 565
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 29/139 (20%), Positives = 62/139 (44%), Gaps = 8/139 (5%)
Query: 363 VESDIIAPHRLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMAN 422
+ + I+ H D+ G +V R +A +++ I + +++Y + AN
Sbjct: 368 LNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSY----NRAN 423
Query: 423 RLVVVLCNLKPAKMRGIESAGMVLCASVEEEGNKKVEPLFVPPSSKAGDKIVVEGYETGA 482
R V +LCN + A + E + M L ++ + + + S+KA K++ +
Sbjct: 424 RAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVM----KDAK 479
Query: 483 PDEILNPKKKVWEKLQVDL 501
+++ KKK ++L+ L
Sbjct: 480 TKKVVESKKKAVQRLEEQL 498
>pdb|1R49|A Chain A, Human Topoisomerase I (Topo70) Double Mutant K532rY723F
Length = 592
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 29/139 (20%), Positives = 62/139 (44%), Gaps = 8/139 (5%)
Query: 363 VESDIIAPHRLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMAN 422
+ + I+ H D+ G +V R +A +++ I + +++Y + AN
Sbjct: 395 LNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSY----NRAN 450
Query: 423 RLVVVLCNLKPAKMRGIESAGMVLCASVEEEGNKKVEPLFVPPSSKAGDKIVVEGYETGA 482
R V +LCN + A + E + M L ++ + + + S+KA K++ +
Sbjct: 451 RAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVM----KDAK 506
Query: 483 PDEILNPKKKVWEKLQVDL 501
+++ KKK ++L+ L
Sbjct: 507 TKKVVESKKKAVQRLEEQL 525
>pdb|1A35|A Chain A, Human Topoisomerase IDNA COMPLEX
pdb|1A36|A Chain A, Topoisomerase IDNA COMPLEX
Length = 591
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 29/139 (20%), Positives = 62/139 (44%), Gaps = 8/139 (5%)
Query: 363 VESDIIAPHRLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMAN 422
+ + I+ H D+ G +V R +A +++ I + +++Y + AN
Sbjct: 394 LNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSY----NRAN 449
Query: 423 RLVVVLCNLKPAKMRGIESAGMVLCASVEEEGNKKVEPLFVPPSSKAGDKIVVEGYETGA 482
R V +LCN + A + E + M L ++ + + + S+KA K++ +
Sbjct: 450 RAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVM----KDAK 505
Query: 483 PDEILNPKKKVWEKLQVDL 501
+++ KKK ++L+ L
Sbjct: 506 TKKVVESKKKAVQRLEEQL 524
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,274,466
Number of Sequences: 62578
Number of extensions: 690602
Number of successful extensions: 2244
Number of sequences better than 100.0: 67
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 2145
Number of HSP's gapped (non-prelim): 72
length of query: 549
length of database: 14,973,337
effective HSP length: 104
effective length of query: 445
effective length of database: 8,465,225
effective search space: 3767025125
effective search space used: 3767025125
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)