Query psy5948
Match_columns 549
No_of_seqs 335 out of 2711
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 22:32:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5948.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5948hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK08560 tyrosyl-tRNA syntheta 100.0 2.2E-68 4.9E-73 553.3 29.3 322 20-349 2-327 (329)
2 KOG2144|consensus 100.0 4.5E-69 9.7E-74 523.3 19.7 346 16-361 3-350 (360)
3 PTZ00126 tyrosyl-tRNA syntheta 100.0 1.6E-67 3.6E-72 553.0 32.9 344 3-354 22-375 (383)
4 PTZ00348 tyrosyl-tRNA syntheta 100.0 1.4E-59 3.1E-64 519.2 29.4 327 17-355 1-350 (682)
5 PRK12285 tryptophanyl-tRNA syn 100.0 9.9E-58 2.2E-62 477.3 23.6 290 22-345 39-353 (368)
6 COG0180 TrpS Tryptophanyl-tRNA 100.0 4.9E-56 1.1E-60 449.5 21.2 268 46-345 4-296 (314)
7 TIGR00233 trpS tryptophanyl-tR 100.0 1.2E-55 2.6E-60 457.0 21.6 278 46-345 1-294 (328)
8 PRK12284 tryptophanyl-tRNA syn 100.0 4E-55 8.6E-60 459.0 22.6 267 48-344 3-294 (431)
9 PRK12282 tryptophanyl-tRNA syn 100.0 8.1E-54 1.7E-58 443.6 22.2 265 48-344 3-292 (333)
10 PRK12556 tryptophanyl-tRNA syn 100.0 1.4E-53 3.1E-58 441.2 22.4 269 48-344 4-294 (332)
11 PRK00927 tryptophanyl-tRNA syn 100.0 1.3E-53 2.9E-58 443.3 21.3 264 48-344 2-293 (333)
12 PLN02886 aminoacyl-tRNA ligase 100.0 4.8E-53 1E-57 440.7 20.3 264 47-344 46-347 (389)
13 cd00805 TyrRS_core catalytic c 100.0 2.5E-52 5.3E-57 422.4 22.2 257 48-335 1-269 (269)
14 PRK05912 tyrosyl-tRNA syntheta 100.0 2.1E-51 4.6E-56 436.6 28.0 303 19-357 3-326 (408)
15 PF00579 tRNA-synt_1b: tRNA sy 100.0 3.2E-53 6.9E-58 434.7 12.4 282 45-337 3-292 (292)
16 PLN02486 aminoacyl-tRNA ligase 100.0 1.3E-51 2.8E-56 432.0 22.5 294 22-345 46-367 (383)
17 PRK12283 tryptophanyl-tRNA syn 100.0 3E-51 6.4E-56 426.6 22.2 264 48-344 3-359 (398)
18 cd00806 TrpRS_core catalytic c 100.0 1.1E-50 2.4E-55 412.2 23.5 256 49-335 1-280 (280)
19 PRK13354 tyrosyl-tRNA syntheta 100.0 5.9E-49 1.3E-53 417.4 26.7 297 25-357 9-324 (410)
20 COG0162 TyrS Tyrosyl-tRNA synt 100.0 1.2E-49 2.5E-54 416.8 20.9 323 17-344 2-355 (401)
21 cd00395 Tyr_Trp_RS_core cataly 100.0 8.7E-49 1.9E-53 396.7 22.7 256 49-335 1-273 (273)
22 KOG2713|consensus 100.0 6.4E-49 1.4E-53 382.0 16.8 266 47-345 13-308 (347)
23 TIGR00234 tyrS tyrosyl-tRNA sy 100.0 1.2E-48 2.6E-53 411.6 14.0 317 24-344 7-375 (377)
24 KOG2241|consensus 100.0 4.1E-45 8.9E-50 354.5 13.2 152 365-519 89-240 (255)
25 PTZ00348 tyrosyl-tRNA syntheta 100.0 2E-43 4.4E-48 390.9 21.3 266 71-354 398-670 (682)
26 KOG2623|consensus 100.0 3.1E-36 6.6E-41 304.6 19.5 303 20-358 31-368 (467)
27 KOG2145|consensus 100.0 3.2E-35 6.9E-40 286.7 15.2 291 22-344 58-379 (397)
28 PLN02610 probable methionyl-tR 100.0 2.2E-33 4.8E-38 319.7 16.0 148 368-518 638-785 (801)
29 cd02798 tRNA_bind_CsaA tRNA-bi 99.9 1.8E-26 4E-31 201.6 7.8 103 368-473 4-107 (107)
30 TIGR02222 chap_CsaA export-rel 99.9 2.9E-26 6.3E-31 200.1 8.7 103 369-474 3-107 (107)
31 PRK10089 tRNA-binding protein; 99.9 6.9E-26 1.5E-30 199.5 8.4 105 367-474 6-112 (112)
32 cd02799 tRNA_bind_EMAP-II_like 99.9 2.7E-25 5.8E-30 194.0 11.4 103 369-473 2-104 (105)
33 PF01588 tRNA_bind: Putative t 99.9 1.2E-24 2.5E-29 186.5 9.0 95 375-472 1-95 (95)
34 COG0073 ARC1 EMAP domain [Gene 99.9 4.7E-24 1E-28 191.0 10.4 107 366-473 12-123 (123)
35 cd02153 tRNA_bindingDomain The 99.9 2.2E-23 4.7E-28 180.0 10.7 98 375-473 1-99 (99)
36 cd02800 tRNA_bind_EcMetRS_like 99.9 2.4E-23 5.2E-28 181.7 9.8 101 368-473 4-104 (105)
37 TIGR00399 metG_C_term methiony 99.9 1.3E-22 2.9E-27 184.6 11.1 105 365-473 32-136 (137)
38 cd02796 tRNA_bind_bactPheRS tR 99.8 2.9E-20 6.3E-25 161.7 9.0 93 375-473 1-103 (103)
39 PRK12267 methionyl-tRNA synthe 99.8 2.5E-19 5.5E-24 202.7 10.3 103 367-473 545-647 (648)
40 PRK00133 metG methionyl-tRNA s 99.8 1E-18 2.2E-23 198.3 8.9 101 368-473 571-672 (673)
41 TIGR00472 pheT_bact phenylalan 99.7 3.7E-18 8.1E-23 196.9 5.3 135 373-517 44-189 (798)
42 PRK00629 pheT phenylalanyl-tRN 99.7 4.4E-17 9.5E-22 187.8 8.7 135 372-517 42-187 (791)
43 cd00808 GluRS_core catalytic c 99.6 5.5E-15 1.2E-19 146.6 11.3 172 54-259 8-191 (239)
44 PRK00750 lysK lysyl-tRNA synth 99.6 6.3E-14 1.4E-18 153.9 18.1 196 47-248 24-293 (510)
45 cd00674 LysRS_core_class_I cat 99.5 1.6E-13 3.4E-18 143.6 11.8 197 46-248 19-288 (353)
46 cd00802 class_I_aaRS_core cata 99.5 8.1E-14 1.8E-18 128.1 8.4 62 178-239 78-143 (143)
47 PF01921 tRNA-synt_1f: tRNA sy 99.5 8E-14 1.7E-18 144.5 9.1 204 46-255 23-307 (360)
48 cd00418 GlxRS_core catalytic c 99.4 7.5E-13 1.6E-17 130.5 11.3 151 54-241 8-160 (230)
49 COG1384 LysS Lysyl-tRNA synthe 99.4 2.1E-12 4.6E-17 137.5 11.6 193 46-248 19-290 (521)
50 TIGR00467 lysS_arch lysyl-tRNA 99.3 5E-12 1.1E-16 138.4 11.7 196 46-248 18-287 (515)
51 COG2517 Predicted RNA-binding 99.2 3.3E-11 7.2E-16 111.4 7.1 72 370-448 117-188 (219)
52 TIGR02306 RNA_lig_DRB0094 RNA 99.1 3E-10 6.4E-15 118.0 7.9 67 375-452 3-97 (341)
53 PRK12410 glutamylglutaminyl-tR 99.0 7.8E-09 1.7E-13 110.8 16.1 268 55-351 7-347 (433)
54 PRK14895 gltX glutamyl-tRNA sy 99.0 6.7E-09 1.5E-13 113.1 15.6 196 49-259 4-269 (513)
55 PRK05710 glutamyl-Q tRNA(Asp) 99.0 2E-09 4.4E-14 110.2 10.6 175 54-241 12-243 (299)
56 TIGR00464 gltX_bact glutamyl-t 98.9 2.3E-08 5E-13 109.1 17.3 190 55-259 9-270 (470)
57 TIGR03838 queuosine_YadB gluta 98.9 1.4E-08 3.1E-13 102.8 12.6 177 55-244 8-239 (272)
58 PLN02627 glutamyl-tRNA synthet 98.9 2.9E-08 6.4E-13 108.4 15.8 199 47-259 45-322 (535)
59 cd00807 GlnRS_core catalytic c 98.9 5.6E-09 1.2E-13 103.3 9.3 160 54-241 8-171 (238)
60 cd09287 GluRS_non_core catalyt 98.9 4.6E-09 9.9E-14 104.2 7.8 165 51-240 5-172 (240)
61 PRK01406 gltX glutamyl-tRNA sy 98.9 6E-08 1.3E-12 106.0 17.1 81 177-259 194-280 (476)
62 PRK12558 glutamyl-tRNA synthet 98.8 6.2E-08 1.3E-12 104.4 15.1 82 176-259 182-269 (445)
63 PRK04156 gltX glutamyl-tRNA sy 98.8 2.5E-08 5.4E-13 110.0 11.4 212 15-240 59-344 (567)
64 PF00749 tRNA-synt_1c: tRNA sy 98.8 3.2E-08 6.9E-13 102.8 11.3 176 54-243 8-252 (314)
65 COG0008 GlnS Glutamyl- and glu 98.6 8.8E-08 1.9E-12 103.8 9.8 65 177-241 193-257 (472)
66 PTZ00402 glutamyl-tRNA synthet 98.5 4.3E-07 9.4E-12 100.3 11.0 172 53-240 58-294 (601)
67 PLN03233 putative glutamate-tR 98.4 5.7E-07 1.2E-11 98.3 9.1 168 55-239 19-251 (523)
68 cd00671 ArgRS_core catalytic c 98.4 1.1E-06 2.3E-11 86.4 8.1 180 51-240 6-212 (212)
69 PRK01611 argS arginyl-tRNA syn 98.3 2.8E-06 6.1E-11 94.1 9.4 185 51-248 117-335 (507)
70 PLN02859 glutamine-tRNA ligase 98.2 9.2E-06 2E-10 92.2 12.6 190 35-240 250-505 (788)
71 PRK05347 glutaminyl-tRNA synth 98.1 1.2E-05 2.5E-10 88.5 10.9 174 51-240 33-276 (554)
72 TIGR00463 gltX_arch glutamyl-t 98.1 1.2E-05 2.6E-10 89.0 10.5 176 49-240 93-335 (560)
73 TIGR00440 glnS glutaminyl-tRNA 98.1 1.4E-05 3.1E-10 87.6 10.5 171 55-241 8-248 (522)
74 PLN02907 glutamate-tRNA ligase 98.1 1.3E-05 2.7E-10 91.8 10.1 174 50-239 214-453 (722)
75 cd00672 CysRS_core catalytic c 98.0 2.5E-05 5.5E-10 76.8 9.3 157 46-248 20-187 (213)
76 cd00668 Ile_Leu_Val_MetRS_core 97.9 4E-05 8.7E-10 79.6 9.3 58 190-248 226-286 (312)
77 PRK00260 cysS cysteinyl-tRNA s 97.9 6.9E-05 1.5E-09 82.2 11.2 79 46-125 22-110 (463)
78 PTZ00437 glutaminyl-tRNA synth 97.9 0.0001 2.2E-09 81.3 11.9 85 36-135 38-126 (574)
79 PRK14703 glutaminyl-tRNA synth 97.8 0.00012 2.5E-09 84.0 11.1 73 49-135 31-107 (771)
80 TIGR00435 cysS cysteinyl-tRNA 97.6 0.00043 9.3E-09 75.9 11.8 79 46-125 21-107 (465)
81 PRK12418 cysteinyl-tRNA synthe 97.6 0.00053 1.2E-08 73.1 11.6 67 180-247 204-273 (384)
82 KOG1149|consensus 97.5 0.00011 2.3E-09 77.4 4.4 65 177-241 224-288 (524)
83 PLN02946 cysteine-tRNA ligase 97.4 0.0007 1.5E-08 75.2 10.8 65 180-246 267-334 (557)
84 TIGR03447 mycothiol_MshC cyste 97.4 0.00089 1.9E-08 71.9 10.7 66 180-246 231-299 (411)
85 COG0215 CysS Cysteinyl-tRNA sy 97.2 0.0011 2.4E-08 71.4 8.8 196 48-248 23-281 (464)
86 PF01406 tRNA-synt_1e: tRNA sy 97.2 0.001 2.2E-08 68.3 7.8 66 180-247 196-264 (300)
87 PRK14536 cysS cysteinyl-tRNA s 97.1 0.0026 5.6E-08 69.9 10.9 68 180-248 223-292 (490)
88 PRK14535 cysS cysteinyl-tRNA s 96.9 0.0038 8.2E-08 70.4 9.9 76 47-125 248-334 (699)
89 PRK14534 cysS cysteinyl-tRNA s 96.9 0.0022 4.7E-08 70.3 7.6 67 180-248 223-292 (481)
90 COG0018 ArgS Arginyl-tRNA synt 96.9 0.0042 9.1E-08 69.6 9.9 65 189-254 332-402 (577)
91 PF00750 tRNA-synt_1d: tRNA sy 96.2 0.0084 1.8E-07 63.6 6.4 66 189-255 236-308 (354)
92 cd02156 nt_trans nucleotidyl t 95.3 0.072 1.6E-06 46.1 7.5 40 50-93 2-41 (105)
93 cd00817 ValRS_core catalytic c 94.8 0.019 4E-07 61.6 2.9 58 190-248 296-356 (382)
94 PF00133 tRNA-synt_1: tRNA syn 94.7 0.021 4.6E-07 64.7 3.2 58 189-247 513-573 (601)
95 PHA02142 putative RNA ligase 94.7 0.088 1.9E-06 55.6 7.3 67 371-447 6-100 (366)
96 cd00818 IleRS_core catalytic c 93.8 0.057 1.2E-06 56.9 3.8 57 190-248 252-312 (338)
97 PF09334 tRNA-synt_1g: tRNA sy 93.2 0.25 5.4E-06 53.2 7.7 78 54-134 8-93 (391)
98 PRK00133 metG methionyl-tRNA s 93.2 0.24 5.2E-06 57.1 7.9 78 47-125 3-89 (673)
99 cd00812 LeuRS_core catalytic c 92.9 0.048 1E-06 56.8 1.6 57 190-248 224-288 (314)
100 PLN02843 isoleucyl-tRNA synthe 92.8 0.087 1.9E-06 63.0 3.8 58 188-247 562-623 (974)
101 TIGR00392 ileS isoleucyl-tRNA 92.5 0.086 1.9E-06 62.5 3.2 70 189-260 563-641 (861)
102 PRK05743 ileS isoleucyl-tRNA s 92.5 0.1 2.2E-06 62.1 3.7 69 188-258 543-620 (912)
103 PRK11893 methionyl-tRNA synthe 92.4 0.078 1.7E-06 58.9 2.5 57 190-248 254-312 (511)
104 PRK13208 valS valyl-tRNA synth 91.7 0.14 3.1E-06 60.1 3.7 68 190-258 486-561 (800)
105 COG0143 MetG Methionyl-tRNA sy 91.4 0.57 1.2E-05 52.5 7.9 83 55-141 15-105 (558)
106 PLN02959 aminoacyl-tRNA ligase 91.0 0.16 3.5E-06 61.5 3.3 58 189-248 670-731 (1084)
107 COG0060 IleS Isoleucyl-tRNA sy 90.9 0.25 5.4E-06 58.1 4.5 59 191-256 556-619 (933)
108 PRK13804 ileS isoleucyl-tRNA s 90.9 0.18 3.8E-06 60.4 3.4 70 188-259 581-659 (961)
109 PLN02224 methionine-tRNA ligas 90.8 0.33 7.1E-06 55.3 5.3 78 46-125 69-156 (616)
110 KOG0432|consensus 90.5 0.48 1E-05 54.6 6.2 27 221-248 580-606 (995)
111 PRK06039 ileS isoleucyl-tRNA s 90.3 0.23 5E-06 59.6 3.7 58 189-248 544-605 (975)
112 TIGR00395 leuS_arch leucyl-tRN 90.1 0.21 4.6E-06 59.7 3.2 70 189-260 572-650 (938)
113 TIGR00422 valS valyl-tRNA synt 89.9 0.24 5.1E-06 58.8 3.4 59 189-248 477-538 (861)
114 KOG1147|consensus 89.5 0.94 2E-05 49.7 7.1 68 54-135 207-275 (712)
115 cd00814 MetRS_core catalytic c 89.4 0.23 5E-06 51.8 2.5 71 54-125 9-87 (319)
116 PRK12300 leuS leucyl-tRNA synt 89.4 0.23 4.9E-06 59.1 2.7 69 189-259 529-606 (897)
117 PTZ00427 isoleucine-tRNA ligas 89.3 0.29 6.2E-06 59.7 3.5 53 189-246 672-731 (1205)
118 PRK14900 valS valyl-tRNA synth 89.3 0.25 5.4E-06 59.7 3.0 69 189-259 490-567 (1052)
119 KOG1148|consensus 89.0 1.1 2.4E-05 49.7 7.2 88 34-135 233-323 (764)
120 COG0143 MetG Methionyl-tRNA sy 88.8 0.65 1.4E-05 52.1 5.5 52 193-248 291-346 (558)
121 PRK05729 valS valyl-tRNA synth 88.6 0.28 6.1E-06 58.2 2.7 69 189-259 472-549 (874)
122 PTZ00419 valyl-tRNA synthetase 87.7 0.34 7.4E-06 58.3 2.7 57 189-247 537-597 (995)
123 PTZ00399 cysteinyl-tRNA-synthe 87.5 0.31 6.6E-06 55.9 2.0 76 180-258 258-343 (651)
124 PLN02381 valyl-tRNA synthetase 87.3 0.41 8.9E-06 57.9 3.1 58 189-248 607-668 (1066)
125 PLN02882 aminoacyl-tRNA ligase 87.2 0.53 1.2E-05 57.4 3.9 57 189-247 566-626 (1159)
126 PRK12267 methionyl-tRNA synthe 87.1 1.1 2.3E-05 51.6 6.1 68 190-259 254-328 (648)
127 TIGR00398 metG methionyl-tRNA 86.9 1.3 2.9E-05 49.4 6.7 71 54-125 8-86 (530)
128 TIGR00456 argS arginyl-tRNA sy 86.7 0.52 1.1E-05 53.2 3.3 65 193-259 331-396 (566)
129 cd00814 MetRS_core catalytic c 86.6 1.1 2.5E-05 46.6 5.6 56 190-247 235-292 (319)
130 PLN02286 arginine-tRNA ligase 86.3 1.1 2.4E-05 50.6 5.7 59 193-252 331-395 (576)
131 PLN02660 pantoate--beta-alanin 85.5 7.5 0.00016 40.0 10.6 66 189-259 145-210 (284)
132 PLN02943 aminoacyl-tRNA ligase 85.4 0.67 1.4E-05 55.6 3.5 69 189-259 535-612 (958)
133 PRK12268 methionyl-tRNA synthe 85.3 1.6 3.5E-05 49.1 6.4 76 49-125 5-91 (556)
134 COG0495 LeuS Leucyl-tRNA synth 85.2 0.59 1.3E-05 54.5 2.8 59 189-248 525-592 (814)
135 PRK00390 leuS leucyl-tRNA synt 85.2 1.7 3.8E-05 51.2 6.7 78 46-125 32-119 (805)
136 PLN02610 probable methionyl-tR 84.9 1.6 3.4E-05 51.4 6.1 78 47-125 18-105 (801)
137 PLN02224 methionine-tRNA ligas 84.0 0.83 1.8E-05 52.0 3.3 68 190-259 321-395 (616)
138 cd00817 ValRS_core catalytic c 83.3 1.6 3.4E-05 46.9 4.9 35 55-89 11-50 (382)
139 PRK11893 methionyl-tRNA synthe 83.1 3.2 7E-05 46.0 7.5 80 52-134 8-95 (511)
140 TIGR00396 leuS_bact leucyl-tRN 82.1 0.48 1E-05 56.0 0.4 69 189-258 519-632 (842)
141 cd00818 IleRS_core catalytic c 81.8 1.5 3.3E-05 46.2 4.0 37 55-91 11-52 (338)
142 PLN02563 aminoacyl-tRNA ligase 81.3 0.55 1.2E-05 56.1 0.5 22 189-210 615-637 (963)
143 cd00812 LeuRS_core catalytic c 81.2 1.9 4.1E-05 44.9 4.4 70 55-125 10-87 (314)
144 PRK12268 methionyl-tRNA synthe 81.0 0.97 2.1E-05 50.9 2.3 55 192-248 289-347 (556)
145 PRK12451 arginyl-tRNA syntheta 80.5 1.8 4E-05 48.8 4.3 57 190-248 323-384 (562)
146 TIGR00396 leuS_bact leucyl-tRN 79.6 1.8 3.9E-05 51.3 4.0 78 47-125 30-116 (842)
147 TIGR00398 metG methionyl-tRNA 79.1 1.6 3.4E-05 48.9 3.2 54 193-248 285-340 (530)
148 PF09334 tRNA-synt_1g: tRNA sy 78.5 0.82 1.8E-05 49.2 0.7 51 193-247 285-339 (391)
149 TIGR00456 argS arginyl-tRNA sy 78.3 2 4.2E-05 48.6 3.7 40 51-90 118-163 (566)
150 PRK12451 arginyl-tRNA syntheta 78.0 1.9 4E-05 48.8 3.4 38 51-88 119-162 (562)
151 PLN02286 arginine-tRNA ligase 77.6 1.6 3.5E-05 49.4 2.8 38 51-88 123-166 (576)
152 PTZ00385 lysyl-tRNA synthetase 75.0 0.62 1.3E-05 53.1 -1.5 50 383-435 609-659 (659)
153 PRK00390 leuS leucyl-tRNA synt 70.0 2.1 4.5E-05 50.5 1.3 64 189-259 522-599 (805)
154 COG0525 ValS Valyl-tRNA synthe 67.3 2.4 5.2E-05 49.7 1.0 25 223-248 514-538 (877)
155 KOG0433|consensus 65.9 5.9 0.00013 45.3 3.6 50 190-241 566-620 (937)
156 KOG0434|consensus 62.1 4 8.6E-05 46.3 1.5 88 190-286 554-660 (1070)
157 COG0495 LeuS Leucyl-tRNA synth 61.7 9.1 0.0002 44.9 4.3 74 47-125 35-121 (814)
158 cd02168 NMNAT_Nudix Nicotinami 60.9 42 0.0009 32.1 8.1 70 54-135 8-77 (181)
159 KOG2007|consensus 60.9 6.3 0.00014 43.2 2.7 67 179-248 247-318 (586)
160 COG0525 ValS Valyl-tRNA synthe 57.0 7.3 0.00016 45.9 2.5 37 56-92 44-84 (877)
161 PLN02882 aminoacyl-tRNA ligase 56.9 20 0.00043 44.2 6.3 46 46-91 38-89 (1159)
162 KOG0435|consensus 56.1 5.9 0.00013 44.9 1.5 46 46-91 57-108 (876)
163 cd02166 NMNAT_Archaea Nicotina 55.1 61 0.0013 30.3 8.0 70 54-135 8-77 (163)
164 PLN02563 aminoacyl-tRNA ligase 53.9 8.9 0.00019 46.1 2.6 45 47-91 111-162 (963)
165 PRK13208 valS valyl-tRNA synth 52.9 8.3 0.00018 45.5 2.2 45 46-90 38-88 (800)
166 PF00133 tRNA-synt_1: tRNA syn 49.7 20 0.00042 41.0 4.5 46 46-91 23-74 (601)
167 TIGR00422 valS valyl-tRNA synt 49.0 10 0.00022 45.1 2.2 46 46-91 33-84 (861)
168 PTZ00419 valyl-tRNA synthetase 48.5 11 0.00024 45.7 2.3 46 46-91 60-111 (995)
169 PRK14900 valS valyl-tRNA synth 47.5 11 0.00024 45.9 2.1 46 46-91 48-99 (1052)
170 PLN02381 valyl-tRNA synthetase 44.8 14 0.0003 45.0 2.4 46 46-91 128-179 (1066)
171 PTZ00399 cysteinyl-tRNA-synthe 43.4 66 0.0014 37.1 7.4 71 51-125 65-148 (651)
172 PRK05729 valS valyl-tRNA synth 43.0 14 0.0003 44.2 1.9 47 45-91 35-87 (874)
173 PLN02843 isoleucyl-tRNA synthe 42.2 48 0.001 40.1 6.3 45 46-90 32-82 (974)
174 KOG0437|consensus 41.9 18 0.0004 41.6 2.6 51 189-241 662-717 (1080)
175 KOG0436|consensus 40.2 30 0.00066 37.4 3.7 38 54-91 48-90 (578)
176 PRK06039 ileS isoleucyl-tRNA s 39.4 18 0.00039 43.7 2.2 46 46-91 41-92 (975)
177 PRK00777 phosphopantetheine ad 39.2 32 0.00069 32.0 3.4 49 190-238 88-136 (153)
178 PRK13804 ileS isoleucyl-tRNA s 37.8 20 0.00044 43.2 2.3 46 46-91 54-105 (961)
179 PLN02943 aminoacyl-tRNA ligase 36.6 30 0.00066 41.8 3.5 46 46-91 88-139 (958)
180 TIGR00395 leuS_arch leucyl-tRN 36.4 17 0.00037 43.7 1.4 41 46-86 25-70 (938)
181 TIGR00392 ileS isoleucyl-tRNA 33.6 26 0.00057 41.7 2.3 46 46-91 36-87 (861)
182 PRK05743 ileS isoleucyl-tRNA s 33.0 26 0.00056 42.1 2.1 46 46-91 49-100 (912)
183 TIGR00339 sopT ATP sulphurylas 30.1 3.4E+02 0.0074 29.3 9.8 35 35-69 170-204 (383)
184 PTZ00427 isoleucine-tRNA ligas 28.0 39 0.00086 41.7 2.5 46 46-91 102-153 (1205)
185 PRK01153 nicotinamide-nucleoti 26.5 2.6E+02 0.0057 26.4 7.4 69 54-135 9-78 (174)
186 PLN02959 aminoacyl-tRNA ligase 25.2 41 0.0009 41.2 2.0 31 55-85 55-89 (1084)
187 PRK13793 nicotinamide-nucleoti 25.1 2.9E+02 0.0064 26.9 7.5 45 49-100 7-52 (196)
188 COG0162 TyrS Tyrosyl-tRNA synt 24.9 95 0.0021 33.7 4.5 39 305-344 270-308 (401)
189 KOG0432|consensus 24.4 58 0.0013 38.4 2.8 36 57-92 87-126 (995)
190 PRK05379 bifunctional nicotina 22.0 3.4E+02 0.0074 28.5 8.0 72 49-135 9-82 (340)
191 PF02662 FlpD: Methyl-viologen 21.0 3E+02 0.0065 24.5 6.3 74 51-135 31-104 (124)
192 PRK00380 panC pantoate--beta-a 20.3 1.6E+02 0.0034 30.4 4.8 67 189-260 139-205 (281)
No 1
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=100.00 E-value=2.2e-68 Score=553.35 Aligned_cols=322 Identities=40% Similarity=0.654 Sum_probs=289.6
Q ss_pred HHHHHHHHcccccccCHHHHHHHHh-cCCceEEEeecCCCccchhhhHHHHHHHHHHHcCCcEEEEEeCceeeecCCCCh
Q psy5948 20 DEKKQLITRNLQEFLGEDRLNVILK-ERDLKIYWGTATTGRPHIAYFVPMSKIADFLRAGCEVTILFADLHAYLDNMKAP 98 (549)
Q Consensus 20 ~~~~~li~R~~~ei~~~~~L~~~l~-~~~~~v~~Gi~PTG~lHIGn~~~~~~l~~l~~~G~~v~ilIaD~~a~~~~~~~~ 98 (549)
++++++|+|++.|++++++|+++++ ++++++|+||+|||.+||||+++++.+++||++|++++|+|||+||+++++.++
T Consensus 2 ~~~~~~~~~~~~e~~~~~el~~~l~~~~~~~v~~G~~PTG~lHLG~~~~~~~~~~lq~~g~~~~i~IaD~ha~~~~~~~~ 81 (329)
T PRK08560 2 EERLELITRNTEEVVTEEELRELLESKEEPKAYIGFEPSGKIHLGHLLTMNKLADLQKAGFKVTVLLADWHAYLNDKGDL 81 (329)
T ss_pred hHHHHHHHhCceeecCHHHHHHHHhCCCCCEEEEccCCCCcchhhhhHHHHHHHHHHHCCCeEEEEEccchhhcCCCCCH
Confidence 5799999999999999999999998 578899999999999999999999999999999999999999999999873232
Q ss_pred hHHHHHHHHHHHHHHHHHHHccCCCCCeeEEEEccccccccccHHHHHHHHcccCHHHHHHhhHHHhhhccCCCcccchh
Q psy5948 99 WELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLSKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLY 178 (549)
Q Consensus 99 ~~~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~k~~~~~~~~~~~~~~~~~~~Y 178 (549)
.+.+.+... +.+.|+|+|+||++++||+||+|+.+.+||..++.+++.++..++.+......+..++.++|+|+|
T Consensus 82 ---~~i~~~~~~--~~~~~~A~G~dp~k~~i~~qS~~~~~~~~~~~~~~l~~~~~~~~l~r~~~~~~~~~~~~~~g~l~Y 156 (329)
T PRK08560 82 ---EEIRKVAEY--NKKVFEALGLDPDKTEFVLGSEFQLDKEYWLLVLKLAKNTTLARARRSMTIMGRRMEEPDVSKLVY 156 (329)
T ss_pred ---HHHHHHHHH--HHHHHHHcCCChhheEEEecchhhccchHHHHHHHHHhhccHHHHHHhhhhhcccCCCCCHHHHHH
Confidence 334444333 246788999999999999999999888888888889999998887763222112223458999999
Q ss_pred hHHhhcccccccCcEEEecccchhhHHHHHHhhhhcCCCceeEEecccccCCCCC--CccCCCCCCeeeccCCHHHHHHH
Q psy5948 179 PGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGG--KMSSSEEDSKIDLLDAPALVKKK 256 (549)
Q Consensus 179 P~LqAaDil~~~~d~~~gG~DQ~~~~~~~r~l~~~~~~~~~~~l~~plL~~l~G~--KMSKS~~~s~I~L~Dsp~~i~kK 256 (549)
|+|||||++++++|++|||.||++|++++|++++++|+.+|+.+++|+||||+|+ |||||+++|+|||+|+|++|++|
T Consensus 157 P~lqaaDil~~~ad~vpvG~DQ~~h~~l~Rdia~~~n~~~p~~l~~~~l~~L~g~~~KMSKS~p~~~I~L~D~~~~I~~K 236 (329)
T PRK08560 157 PLMQVADIFYLDVDIAVGGMDQRKIHMLAREVLPKLGYKKPVCIHTPLLTGLDGGGIKMSKSKPGSAIFVHDSPEEIRRK 236 (329)
T ss_pred HHHHHHHHHHhCCCEEEechhHHHHHHHHHHhhHhcCCCCceEEEcCccCCCCCCCCCCcCCCCCCeecccCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999996 99999988899999999999999
Q ss_pred HHhccCCCCCCCcchhhchhhhheecccCCCcceeeeecccCCCCCCCCCHHHHHHHHHcCCCChHHHHHHHHHHHHHhc
Q psy5948 257 LKKAFCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPADLKAAAEFYINRLL 336 (549)
Q Consensus 257 I~~A~td~~~~~~~~v~~~~k~~lf~~~~~~~~~~i~~~~~~g~~~~~~~~eel~~~~~~g~l~~~dlK~~Lae~l~~~l 336 (549)
|++|+|+|++++.|++++|+++++++.+.. |+++|++.+||+.+++++++++++|.+|+++|++||++|++.|+++|
T Consensus 237 I~kA~t~~~~~~~n~v~~~~~~~~~~~~~~---~~~~r~~~~g~~~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~~l 313 (329)
T PRK08560 237 IKKAYCPPGEVEGNPVLEIAKYHIFPRYDP---FVIERPEKYGGDLEYESYEELERDYAEGKLHPMDLKNAVAEYLIEIL 313 (329)
T ss_pred HHhccCCCCCcCCCcHHHHHHHHhhccccc---eEEechhhcCCCCCcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999886 99999999999999999999999999999999999999999999999
Q ss_pred Cchhhhhcc-hHHH
Q psy5948 337 EPIRKKFES-KELK 349 (549)
Q Consensus 337 ~pir~~~~~-~e~~ 349 (549)
+|+|++|++ +|++
T Consensus 314 ~pir~~~~~~~~~~ 327 (329)
T PRK08560 314 EPVREYLEEGPELL 327 (329)
T ss_pred HHHHHHHhCChhhh
Confidence 999999995 4443
No 2
>KOG2144|consensus
Probab=100.00 E-value=4.5e-69 Score=523.35 Aligned_cols=346 Identities=69% Similarity=1.039 Sum_probs=327.6
Q ss_pred CCCHHHHHHHHHcccccccCHHHHHHHHhcCCceEEEeecCCCccchhhhHHHHHHHHHHHcCCcEEEEEeCceeeecCC
Q psy5948 16 SLSFDEKKQLITRNLQEFLGEDRLNVILKERDLKIYWGTATTGRPHIAYFVPMSKIADFLRAGCEVTILFADLHAYLDNM 95 (549)
Q Consensus 16 ~~~~~~~~~li~R~~~ei~~~~~L~~~l~~~~~~v~~Gi~PTG~lHIGn~~~~~~l~~l~~~G~~v~ilIaD~~a~~~~~ 95 (549)
.+++++++.||+|+++|++++++|+.+|..+.+.+|+|+.|||++|+|.+++++++..|..+||.|.|++|||||+++|.
T Consensus 3 s~~~eek~~lItrnlqE~lgee~lk~iL~er~l~~YwGtaptGrpHiay~vpm~kiadflkAGC~VtIl~AD~hA~LdNm 82 (360)
T KOG2144|consen 3 SEEPEEKYKLITRNLQEVLGEEELKNILAERALKCYWGTAPTGRPHIAYFVPMMKIADFLKAGCEVTILFADLHAFLDNM 82 (360)
T ss_pred CCCHHHHHHHHHHHHHHHhCHHHHHHHHhccCceeeecCCCCCCcceeeeeehhHHHHHHhcCCeEEEEehHHHHHHhcc
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHccCCCCCeeEEEEccccccccccHHHHHHHHcccCHHHHHHhhHHHhhhccCCCccc
Q psy5948 96 KAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLSKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSG 175 (549)
Q Consensus 96 ~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~k~~~~~~~~~~~~~~~~~ 175 (549)
+.|+.....+..||+..+.+++...+++.++..|+..|+++.+..|.++++++.+..++.+.++++.+..++.+.+.++.
T Consensus 83 kap~e~~~~rv~yYe~~Ik~~l~~~nv~lEkL~fv~gs~yq~sk~ytld~~rl~~~~~~hdak~agaevvkqve~plls~ 162 (360)
T KOG2144|consen 83 KAPDELVIRRVGYYEKEIKAALGSINVPLEKLKFVKGSNYQLSKYYTLDMYRLSSNVTQHDAKKAGAEVVKQVENPLLSG 162 (360)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhhcCCcHHHHhhhcccccccCccchhhHHHHHhhccHhHHHHhhhhHHHhhcchhhhh
Confidence 99999888888888888888888999999999999999999888999999999999999999998887777778889999
Q ss_pred chhhHHhhcccccccCcEEEecccchhhHHHHHHhhhhcCCCceeEEecccccCCC-CCCccCCCCCCeeeccCCHHHHH
Q psy5948 176 LLYPGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLA-GGKMSSSEEDSKIDLLDAPALVK 254 (549)
Q Consensus 176 ~~YP~LqAaDil~~~~d~~~gG~DQ~~~~~~~r~l~~~~~~~~~~~l~~plL~~l~-G~KMSKS~~~s~I~L~Dsp~~i~ 254 (549)
++||.|||+|+.++.+|+|+||.|||..+.+|+++++.+|+++++++++||+|||+ |+|||||+++|.|+|.|+|++++
T Consensus 163 llYP~MQalDe~~L~vD~qfgGvDQRKIf~~A~eylp~l~ykKrihLmnpMvPGL~q~~KMSsSd~~SkIdllD~~~~V~ 242 (360)
T KOG2144|consen 163 LLYPGMQALDEFYLEVDAQFGGVDQRKIFVLAEEYLPDLGYKKRIHLMNPMVPGLAQGEKMSSSDPLSKIDLLDEPADVN 242 (360)
T ss_pred hhhhhHHHhhHHHHhhhHHhcCccHHHHHHHHHHhhhhhCcccceeecCCCCccccccCccccCCcccccccccCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998 79999999999999999999999
Q ss_pred HHHHhccCCCCCCCcchhhchhhhheecccCCCcceeeeecccCCCCCCCCCHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q psy5948 255 KKLKKAFCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPADLKAAAEFYINR 334 (549)
Q Consensus 255 kKI~~A~td~~~~~~~~v~~~~k~~lf~~~~~~~~~~i~~~~~~g~~~~~~~~eel~~~~~~g~l~~~dlK~~Lae~l~~ 334 (549)
+||++|||+||++++||++.|++|++||++...+.+.|.|++++||+.+|.++|+++++|.+|++||+|||+.|+.+||+
T Consensus 243 kKI~kAfCePg~ve~Ng~L~fvkyvvfP~~~e~~~~~i~r~ek~GG~~tf~syed~e~~y~~~~lhPgDLK~~l~~alN~ 322 (360)
T KOG2144|consen 243 KKIKKAFCEPGNVEGNGCLSFVKYVVFPIFEEFGVEVIDRPEKFGGNKTFKSYEDIEKDYEEGELHPGDLKKGLEKALNE 322 (360)
T ss_pred HHHHHhcCCCCCcCCCcHHHHHHHHHhhhHHhcCceeecchhhcCCcchhHHHHHHHHHHHhCCcChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998666778899999999999999999999999999999999999999999
Q ss_pred hcCchhhhhcc-hHHHHHhhhcCCCCCC
Q psy5948 335 LLEPIRKKFES-KELKDLTSKAYPPKKP 361 (549)
Q Consensus 335 ~l~pir~~~~~-~e~~~~~~~~~~~~~~ 361 (549)
+|.|||+.+.. .+..+...++||.+.+
T Consensus 323 lL~~ir~~~~~~~~~~~~~~~ay~~~~~ 350 (360)
T KOG2144|consen 323 LLQPIREEFSNWPELLKLFQAAYPDPVK 350 (360)
T ss_pred HHHHHHHHHhcChhHHHHHHhhCCChhh
Confidence 99999999985 7777888888986433
No 3
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.6e-67 Score=553.02 Aligned_cols=344 Identities=30% Similarity=0.486 Sum_probs=295.4
Q ss_pred ccccccccccCCCCCCHHHHHHHHHcccccccCHHHHHHHHhc-CCceEEEeecCCCccchhhh-HHHHHHHHHHHcCCc
Q psy5948 3 LESQMNSLNMTSPSLSFDEKKQLITRNLQEFLGEDRLNVILKE-RDLKIYWGTATTGRPHIAYF-VPMSKIADFLRAGCE 80 (549)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~li~R~~~ei~~~~~L~~~l~~-~~~~v~~Gi~PTG~lHIGn~-~~~~~l~~l~~~G~~ 80 (549)
||.-+|- +.++..|+++||+++|+|+++|++++++|+++|++ +++++|+||+|||++||||. +..+.+++||++|++
T Consensus 22 ~~~~~~~-~~~~~~~~~~e~~~~i~r~~~e~i~~eel~~~l~~~~~~~v~~G~~PTG~lHLG~g~i~~~~~~~lq~~G~~ 100 (383)
T PTZ00126 22 LETGFRG-SPPQSKLSLEERVKLCLSIGEECIQPEELRELLKLKERPICYDGFEPSGRMHIAQGILKAINVNKLTKAGCV 100 (383)
T ss_pred hhhhccc-CCCCCCCCHHHHHHHHhcCceeecCHHHHHHHHhcCCCCEEEEEECCCCcccccchHhHhHHHHHHHhCCCe
Confidence 3444444 45556799999999999999999999999999976 67899999999999999994 344568889989999
Q ss_pred EEEEEeCceeeecCCC-ChhHHHHHHHHHHHHHHHHHHHccCCCCCeeEEEEcccc-cccc-ccHHHHHHHHcccCHHHH
Q psy5948 81 VTILFADLHAYLDNMK-APWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDY-QLSK-EYTLDVYRLSSVITEHDA 157 (549)
Q Consensus 81 v~ilIaD~~a~~~~~~-~~~~~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS~~-~~~~-~~~~~~~~l~~~~t~~~~ 157 (549)
++++||||||+++++. ...+..+.+..|+ .+.|+|+|+||++++||+||+| +.+. .||..+..+++.++..++
T Consensus 101 v~~~IaD~hA~~~~~~g~~l~~i~~~~~~~----~~~~~A~GlDp~k~~i~~qS~~v~~~~~l~w~~~~~la~~~tl~r~ 176 (383)
T PTZ00126 101 FVFWVADWFALLNNKMGGDLEKIRKVGEYF----IEVWKAAGMDMDNVRFLWASEEINKNPNDYWLRVMDIARSFNITRI 176 (383)
T ss_pred EEEEEccceeecCCCCCCCHHHHHHHHHHH----HHHHHHhCCCccceEEEECChhhhhhhHHHHHHHHHHhccCCHHHH
Confidence 9999999999998753 2233223333332 3568899999999999999996 4444 577788889999998888
Q ss_pred HHhhHHHhhh-ccCCCcccchhhHHhhcccccccCcEEEecccchhhHHHHHHhhhhcCC-CceeEEecccccCC-CC-C
Q psy5948 158 KKAGAEVVKQ-VEHPLLSGLLYPGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGY-AKRIHFMNPMVPGL-AG-G 233 (549)
Q Consensus 158 k~~~~~~~~~-~~~~~~~~~~YP~LqAaDil~~~~d~~~gG~DQ~~~~~~~r~l~~~~~~-~~~~~l~~plL~~l-~G-~ 233 (549)
++......+. .++.++|+|+||+|||||++++++|+++||.||++|++++|++++++|+ .+|+.+++|+|+|| +| +
T Consensus 177 ~r~~~~~~r~~~~~~~~g~l~YP~LQaaDil~l~adivpvG~DQ~~~~~LaRdia~~~~~~~~~~~~~~~~lpgL~dg~~ 256 (383)
T PTZ00126 177 KRCSQIMGRSEGDEQPCAQILYPCMQCADIFYLKADICQLGMDQRKVNMLAREYCDKKKIKKKPIILSHHMLPGLLEGQE 256 (383)
T ss_pred HhhhhhhccccCCCCCchhhhhhHHHhhhhhccCCCEEEeCccHHHHHHHHHHHHHHhCCCCCceeecccccccCCCCCC
Confidence 6543322222 2345789999999999999999999999999999999999999999996 47788899999999 46 7
Q ss_pred CccCCCCCCeeeccCCHHHHHHHHHhccCCCCCCCcchhhchhhhheecccCCCcceeeeecccCCCCCCCCCHHHHHHH
Q psy5948 234 KMSSSEEDSKIDLLDAPALVKKKLKKAFCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQV 313 (549)
Q Consensus 234 KMSKS~~~s~I~L~Dsp~~i~kKI~~A~td~~~~~~~~v~~~~k~~lf~~~~~~~~~~i~~~~~~g~~~~~~~~eel~~~ 313 (549)
|||||+++++|+|+|+|++|++|||+|+|+|+.+++|++++|+++++|+++.. |.|+|++++||++++.++++++++
T Consensus 257 KMSKS~~ns~I~L~Dspe~I~kKI~kA~t~p~~~~~npv~~~~~~~~~~~~~~---~~I~r~~k~gg~~~~~~~eel~~~ 333 (383)
T PTZ00126 257 KMSKSDPNSAIFMEDSEEDVNRKIKKAYCPPGVIEGNPILAYFKSIVFPAFNS---FTVLRKEKNGGDVTYTTYEELEKD 333 (383)
T ss_pred CCCcCCCCCeecCCCCHHHHHHHHHhCcCCCCCCCCCcchhhhhhcccccccc---eeEeccccccCccCcCCHHHHHHH
Confidence 99999998899999999999999999999999999999999999999999887 999999999999999999999999
Q ss_pred HHcCCCChHHHHHHHHHHHHHhcCchhhhhc-chHHHHHhhh
Q psy5948 314 FAKQELHPADLKAAAEFYINRLLEPIRKKFE-SKELKDLTSK 354 (549)
Q Consensus 314 ~~~g~l~~~dlK~~Lae~l~~~l~pir~~~~-~~e~~~~~~~ 354 (549)
|.+|++||++||++||+.|+++|+|||++|. ++|+++++..
T Consensus 334 y~~g~l~p~dlK~~lae~i~~~L~PIRe~~~~~~e~~~~~~~ 375 (383)
T PTZ00126 334 YLSGALHPGDLKPALAKYLNLMLQPVRDHFQNNPEAKSLLSE 375 (383)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 9999999999999999999999999999999 5788876653
No 4
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.4e-59 Score=519.20 Aligned_cols=327 Identities=27% Similarity=0.370 Sum_probs=270.8
Q ss_pred CCHHHHHHHHHcccccccCHHHHHHHHhc-CCceEEEeecCCCccchhhh-HHHHHHHHHHHcCCcEEEEEeCceeeecC
Q psy5948 17 LSFDEKKQLITRNLQEFLGEDRLNVILKE-RDLKIYWGTATTGRPHIAYF-VPMSKIADFLRAGCEVTILFADLHAYLDN 94 (549)
Q Consensus 17 ~~~~~~~~li~R~~~ei~~~~~L~~~l~~-~~~~v~~Gi~PTG~lHIGn~-~~~~~l~~l~~~G~~v~ilIaD~~a~~~~ 94 (549)
|+.+||+++|+|+++|++++++|+.++++ +++++|+||+|||++||||+ ++.+.+..++++|++++++||||||++++
T Consensus 1 ~~~~e~~~ll~r~~~Evi~~eeL~~ll~~~~~~rv~sGi~PTG~lHLGng~~~aik~~~~~q~g~~~~~lIAD~HAlt~~ 80 (682)
T PTZ00348 1 MNTDERYKLLRSVGEECIQESELRNLIEKKPLIRCYDGFEPSGRMHIAQGIFKAVNVNKCTQAGCEFVFWVADWFALMND 80 (682)
T ss_pred CCHHHHHHHHhcCceeecCHHHHHHHHhcCCCCEEEEeeCCCCcCeeccHHHHHHHHHHHHhCCCeEEEEEcchhhhcCC
Confidence 57899999999999999999999999986 67899999999999999994 55666666778999999999999999975
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHccCCCCCeeEEEEcccc-cccc-ccHHHHHHHHcccCHHHHHHhhHHHhhhccCCC
Q psy5948 95 MKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDY-QLSK-EYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPL 172 (549)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS~~-~~~~-~~~~~~~~l~~~~t~~~~k~~~~~~~~~~~~~~ 172 (549)
..+.+..+.+..... +.+.|+|+|+||++++||+||++ +.+. .||..+..++++.+..+++.......+...+.+
T Consensus 81 -~~~~~l~~i~~~~~~--~~~~~lA~GlDpeK~~~~~qSd~i~e~~el~w~lv~~v~~l~t~~q~K~~~~~~g~~~~~i~ 157 (682)
T PTZ00348 81 -KVGGELEKIRIVGRY--LIEVWKAAGMDMDKVLFLWSSEEITNHANTYWRTVLDIGRQNTIARIKKCCTIMGKTEGTLT 157 (682)
T ss_pred -CCCCCHHHHHHHHHH--HHHHHHHcCCCccceEEEECcHhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHhhcccCCCCc
Confidence 433444555542222 34678999999999999999984 5554 466667778887777776653221112223468
Q ss_pred cccchhhHHhhcccccccCcEEEecccchhhHHHHHHhhhhcCCC-ceeEEecccccCCCC--CCccCCCCCCeeeccCC
Q psy5948 173 LSGLLYPGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYA-KRIHFMNPMVPGLAG--GKMSSSEEDSKIDLLDA 249 (549)
Q Consensus 173 ~~~~~YP~LqAaDil~~~~d~~~gG~DQ~~~~~~~r~l~~~~~~~-~~~~l~~plL~~l~G--~KMSKS~~~s~I~L~Ds 249 (549)
+|.|+||+|||||++++++|++|+|.||++|++++|++++++|+. +++.+++++|+||+| +|||||+++|+|||+|+
T Consensus 158 ~gll~YPvLQAADIl~l~adivpvG~DQ~qh~eLaRdia~~~g~~~kpvil~~~~LpGL~gg~~KMSKS~p~naI~L~Ds 237 (682)
T PTZ00348 158 AAQVLYPLMQCADIFFLKADICQLGLDQRKVNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFMEDT 237 (682)
T ss_pred hHHHhhhHHHhhcccccCCCEEEeCccHHHHHHHHHHHHHHhCCCCCceecccccCcCCCCCCCcCCCCCCCCeecccCC
Confidence 999999999999999999999999999999999999999999964 677778899999975 69999998889999999
Q ss_pred HHHHHHHHHhccCCCC-----------CC----CcchhhchhhhheecccCCCcceeeeecccCCCCCCCCCHHHHHHHH
Q psy5948 250 PALVKKKLKKAFCEPG-----------NV----EDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVF 314 (549)
Q Consensus 250 p~~i~kKI~~A~td~~-----------~~----~~~~v~~~~k~~lf~~~~~~~~~~i~~~~~~g~~~~~~~~eel~~~~ 314 (549)
|++|++||++|||||. ++ +.||+++|+++++|+.... +.+. ++.+|+++++++++|
T Consensus 238 pe~I~kKI~kA~td~~~~~~~~~~d~g~p~~~~e~npvl~i~~~~if~~~g~---~~~i------~~~~~~~~eele~~y 308 (682)
T PTZ00348 238 EEDVARKIRQAYCPRVKQSASEITDDGAPVATDDRNPVLDYFQCVVYARPGA---VATI------DGTTYATYEDLEQAF 308 (682)
T ss_pred HHHHHHHHHhCCCCCCcCcccccCCCCCccccCCCCcHHHHHHHHhccccch---hccc------CCcccCcHHHHHHHH
Confidence 9999999999999864 22 5699999999988887654 2211 235788999999999
Q ss_pred HcCCCChHHHHHHHHHHHHHhcCchhhhhc-chHHHHHhhhc
Q psy5948 315 AKQELHPADLKAAAEFYINRLLEPIRKKFE-SKELKDLTSKA 355 (549)
Q Consensus 315 ~~g~l~~~dlK~~Lae~l~~~l~pir~~~~-~~e~~~~~~~~ 355 (549)
.+|++||+|||++|++.|+++|+|+|++|+ .+|+++++.+.
T Consensus 309 ~~g~l~~~dlK~~lae~l~~~L~PIRe~~~~~~e~~~~~~~~ 350 (682)
T PTZ00348 309 VSDEVSEEALKSCLIDEVNALLEPVRQHFASNPEAHELLEAV 350 (682)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHH
Confidence 999999999999999999999999999999 57888666554
No 5
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=9.9e-58 Score=477.29 Aligned_cols=290 Identities=23% Similarity=0.247 Sum_probs=245.3
Q ss_pred HHHHHHcccccccCHHHHHHHHh----cCCceEEEeecCCCccchhhhHHHHHHHHHHHcCCcEEEEEeCceeeecCCCC
Q psy5948 22 KKQLITRNLQEFLGEDRLNVILK----ERDLKIYWGTATTGRPHIAYFVPMSKIADFLRAGCEVTILFADLHAYLDNMKA 97 (549)
Q Consensus 22 ~~~li~R~~~ei~~~~~L~~~l~----~~~~~v~~Gi~PTG~lHIGn~~~~~~l~~l~~~G~~v~ilIaD~~a~~~~~~~ 97 (549)
.+.++||++ +++|++++.+++ ++++++|+|++|||.||||||+++..+++||+.|++++|+|||+||++.+ ..
T Consensus 39 ~h~~~rR~~--~~~hrd~d~il~~~~~~~~~~iytG~~PSG~lHLGh~~~~~~~~~lQ~~g~~~~i~IaD~ha~~~~-~~ 115 (368)
T PRK12285 39 PHPLMRRGI--IFGHRDYDKILEAYRNGKPFAVYTGFMPSGPMHIGHKMVFDELKWHQEFGANVYIPIADDEAYAAR-GL 115 (368)
T ss_pred cchHHhcCe--eeecCCHHHHHHHHhcCCCeEEEEccCCCCCccHHHHHHHHHHHHHHhcCCCEEEEecchHHHhcC-CC
Confidence 388999999 999998887775 47889999999999999999999989999999999999999999999975 22
Q ss_pred hhHHHHHHHHHHHHHHHHHHHccCCCCCeeEEEEccccccccccHHHHHHHHcccCHHHHHHhhHHHhhhccCCCcccch
Q psy5948 98 PWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLSKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLL 177 (549)
Q Consensus 98 ~~~~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~k~~~~~~~~~~~~~~~~~~~ 177 (549)
+..+.+...++. .+.++|+|+||+++.||+||+++. ++...+.+++.+|..++++.. ...++.++|.++
T Consensus 116 --~~e~~~~~~~~~--~~~~lA~G~Dp~k~~i~~qS~~~~---~~~l~~~l~~~~t~~~l~r~~----~f~~~~~~g~~~ 184 (368)
T PRK12285 116 --SWEETREWAYEY--ILDLIALGFDPDKTEIYFQSENIK---VYDLAFELAKKVNFSELKAIY----GFTGETNIGHIF 184 (368)
T ss_pred --CHHHHHHHHHHH--HHHHHHhCCCccceEEEECCchHH---HHHHHHHHHhhCcHHHHHHhh----CCCCCCchhhhh
Confidence 233455554442 367889999999999999999963 444445577788888877642 123456899999
Q ss_pred hhHHhhccccc------ccCcEEEecccchhhHHHHHHhhhhc----CCCceeEEecccccCCCCCCccCCCCCCeeecc
Q psy5948 178 YPGLQALDEEY------LKVDAQFGGVDQRKIFTLAEKYLPQL----GYAKRIHFMNPMVPGLAGGKMSSSEEDSKIDLL 247 (549)
Q Consensus 178 YP~LqAaDil~------~~~d~~~gG~DQ~~~~~~~r~l~~~~----~~~~~~~l~~plL~~l~G~KMSKS~~~s~I~L~ 247 (549)
||+|||||+++ +.++++|+|.||++|++++|++++++ ++.+|..+++++||||+|+|||||+++|+|+|+
T Consensus 185 YP~lQaADil~~~~~~~~~~~lvPvG~DQ~~h~~ltRdiA~r~n~~~gf~~P~~l~~~~lpgL~G~KMSkS~~~s~I~L~ 264 (368)
T PRK12285 185 YPATQAADILHPQLEEGPKPTLVPVGIDQDPHIRLTRDIAERLHGGYGFIKPSSTYHKFMPGLTGGKMSSSKPESAIYLT 264 (368)
T ss_pred hhHHHHHHHHhhcccccCCceEEEeccchHHHHHHHHHHHHHHhhhcCCCCchhHhhhcccCCCCCcCCCCCCCCeeecc
Confidence 99999999999 67789999999999999999999999 778898899999999999999999998999999
Q ss_pred CCHHHHHHHHHhccCCCCC-----------CCcchhhchhhhheecccCCCcceeeeecccCCCCCCCCCHHHHHHHHHc
Q psy5948 248 DAPALVKKKLKKAFCEPGN-----------VEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAK 316 (549)
Q Consensus 248 Dsp~~i~kKI~~A~td~~~-----------~~~~~v~~~~k~~lf~~~~~~~~~~i~~~~~~g~~~~~~~~eel~~~~~~ 316 (549)
|+|++|++||++|+||++. ++.|++++|+++ |..+ ..+++++++++|.+
T Consensus 265 D~p~~I~kKI~kA~Td~~~t~~~~~~~~g~p~~~~v~~~l~~-----------~~~~---------~d~~~eei~~~y~~ 324 (368)
T PRK12285 265 DDPETVKKKIMKALTGGRATLEEQRKLGGEPDECVVYELLLY-----------HLEE---------DDKELKEIYEECRS 324 (368)
T ss_pred CCHHHHHHHHHhCcCCCCcccccccccCCCCCcchHHHHHHH-----------HhcC---------CCccHHHHHHHHhc
Confidence 9999999999999999643 445666665552 2111 12589999999999
Q ss_pred CCCChHHHHHHHHHHHHHhcCchhhhhcc
Q psy5948 317 QELHPADLKAAAEFYINRLLEPIRKKFES 345 (549)
Q Consensus 317 g~l~~~dlK~~Lae~l~~~l~pir~~~~~ 345 (549)
|+++|++||++|++.|+++|+|+|+++++
T Consensus 325 g~~~~g~~K~~lae~i~~~l~~~~er~~~ 353 (368)
T PRK12285 325 GELLCGECKKEAAEKIAEFLKEHQEKREE 353 (368)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999984
No 6
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.9e-56 Score=449.51 Aligned_cols=268 Identities=24% Similarity=0.304 Sum_probs=221.4
Q ss_pred CCceEEEeecCCCccchhhhHHHHHHHHHHHcC-CcEEEEEeCceeeecCCCChhHHHHHHHHHHHHHHHHHHHccCCCC
Q psy5948 46 RDLKIYWGTATTGRPHIAYFVPMSKIADFLRAG-CEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPI 124 (549)
Q Consensus 46 ~~~~v~~Gi~PTG~lHIGn~~~~~~l~~l~~~G-~~v~ilIaD~~a~~~~~~~~~~~~~~~~~~~~~~i~~~l~a~Gldp 124 (549)
.+++|+||++|||.||||||++.+..++.+|.+ ++++++|||+||++.+ ..+++ ...+...++. .+.|+|+|+||
T Consensus 4 ~~~~vlSG~~PSG~lHLGny~ga~~~~v~~q~~~~~~f~~IaDlha~t~~-~~~~~-~~l~~~~~e~--~a~~LA~GiDP 79 (314)
T COG0180 4 KKFRVLSGIQPSGKLHLGNYLGAIRNWVLLQEEYYECFFFIADLHAITVR-QDPTE-EDLRQATREV--AADYLAVGLDP 79 (314)
T ss_pred CCceEEecCCCCCCcchhHhHHHHHHHHHHhcccCceEEEEecHHHhhcC-CCChH-HHHHHHHHHH--HHHHHHhccCc
Confidence 578999999999999999999998877777777 5999999999999986 33433 4455555553 46899999999
Q ss_pred CeeEEEEccccccccccHH------HHHHHHcccCHHHHHHhhHHHhhhccCCCcccchhhHHhhcccccccCcEEEecc
Q psy5948 125 SKLKFVKGTDYQLSKEYTL------DVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFGGV 198 (549)
Q Consensus 125 ~k~~i~~qS~~~~~~~~~~------~~~~l~~~~t~~~~k~~~~~~~~~~~~~~~~~~~YP~LqAaDil~~~~d~~~gG~ 198 (549)
+++.||.||+++++.++.| ++.++.++++.++... +...+.++|.|.||+|||||||++++++||+|.
T Consensus 80 ~k~~if~QS~v~e~~eLa~~l~~~~~~gel~r~~~fKdk~~------~~~~~~~~Gl~~YPvlqAADILl~~a~~VPVG~ 153 (314)
T COG0180 80 EKSTIFLQSEVPEHAELAWLLSCVTNFGELERMTQFKDKSA------KKGESIPIGLLTYPVLQAADILLYQATLVPVGE 153 (314)
T ss_pred cccEEEEccCchHHHHHHHHHHccCcHHHHHhhcCcchhhh------cccccccccchhccHHHHHHhhhccCCeeccCC
Confidence 9999999999998887754 3556777765554222 123466899999999999999999999999999
Q ss_pred cchhhHHHHHHhhhhcC------CCceeEEecc--cccCCCC-CCccCCCCCCeeeccCCHHHHHHHHHhccCCC-----
Q psy5948 199 DQRKIFTLAEKYLPQLG------YAKRIHFMNP--MVPGLAG-GKMSSSEEDSKIDLLDAPALVKKKLKKAFCEP----- 264 (549)
Q Consensus 199 DQ~~~~~~~r~l~~~~~------~~~~~~l~~p--lL~~l~G-~KMSKS~~~s~I~L~Dsp~~i~kKI~~A~td~----- 264 (549)
||.||++++|++++++| +.+|-.+.+. +|+||+| +|||||+++|+|+|+|+|+++++||++|.|||
T Consensus 154 DQ~qHleLtRDiA~rfn~~y~~~f~~P~~~~~~~~~i~gL~g~~KMSkS~~ns~I~L~D~~~~i~kKI~~~~td~~~~~~ 233 (314)
T COG0180 154 DQDQHLELTRDIARRFNHLYGEVFPLPEALISKVARLPGLDGPGKMSKSDPNSAIFLLDDPKTIRKKIKKAATDGPTLIE 233 (314)
T ss_pred CchHHHHHHHHHHHHHHhhcCCccCCccccccCCCcccCCCCCCcccccCCCCeeeccCCHHHHHHHHHHhccCCCCccc
Confidence 99999999999999998 4556555544 9999999 89999999999999999999999999999988
Q ss_pred ----CCCCcchhhchhhhheecccCCCcceeeeecccCCCCCCCCCHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCchh
Q psy5948 265 ----GNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPADLKAAAEFYINRLLEPIR 340 (549)
Q Consensus 265 ----~~~~~~~v~~~~k~~lf~~~~~~~~~~i~~~~~~g~~~~~~~~eel~~~~~~g~l~~~dlK~~Lae~l~~~l~pir 340 (549)
|+++.|++ |.||+. |.. .++.+++++.|++|+++|++||+.|++.|+++|+|+|
T Consensus 234 ~~~~g~Pe~~~l--------~~~~~~---~~~-----------~~~~~ei~~~~~~G~~~~ge~K~~lae~i~~fL~~iq 291 (314)
T COG0180 234 YRKGGKPEVCNL--------FEIYSA---FFE-----------DDSILEIEAEYRGGELGCGECKKELAEAIQEFLKPIQ 291 (314)
T ss_pred cCCCCCCCcchH--------HHHHHH---hcC-----------CCcHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH
Confidence 22333444 445443 321 1567799999999999999999999999999999999
Q ss_pred hhhcc
Q psy5948 341 KKFES 345 (549)
Q Consensus 341 ~~~~~ 345 (549)
+||++
T Consensus 292 er~~~ 296 (314)
T COG0180 292 ERREE 296 (314)
T ss_pred HHHHH
Confidence 99884
No 7
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=100.00 E-value=1.2e-55 Score=457.04 Aligned_cols=278 Identities=26% Similarity=0.322 Sum_probs=220.8
Q ss_pred CCceEEEeecCCCccchhhhHHHHHHHHHHHcCCcEEEEEeCceeeecCCCChhHHHHHHHHHHHHHHHHHHHccCCCCC
Q psy5948 46 RDLKIYWGTATTGRPHIAYFVPMSKIADFLRAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPIS 125 (549)
Q Consensus 46 ~~~~v~~Gi~PTG~lHIGn~~~~~~l~~l~~~G~~v~ilIaD~~a~~~~~~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~ 125 (549)
+++++|+||+|||.+|||||++.+..+.++++|++++|+||||||++++.. .+....+....+ +.+.|+|||+||+
T Consensus 1 ~~~~v~~G~~PTG~~HlG~~l~~~~~~~~~q~~~~~~i~IaD~ha~t~~~~--~~~~~~~~~~~~--~~~~~lA~GlDp~ 76 (328)
T TIGR00233 1 KKFRVLTGIQPSGKMHLGHYLGAIQTKWLQQFGVELFICIADLHAITVKDN--TDPDALRKAREE--LAADILAVGLDPK 76 (328)
T ss_pred CCCEEEEeeCCCcHhHHHHHHHHHHHHHHHhCCCCEEEEeecchhhcCCCC--CCHHHHHHHHHH--HHHHHHHhCcChh
Confidence 467999999999999999999998888888999999999999999997632 122334443333 2468899999999
Q ss_pred eeEEEEccccccccccHHHHHHHHcccCHHHHHHhhHHHhh-hccCCCcccchhhHHhhcccccccCcEEEecccchhhH
Q psy5948 126 KLKFVKGTDYQLSKEYTLDVYRLSSVITEHDAKKAGAEVVK-QVEHPLLSGLLYPGLQALDEEYLKVDAQFGGVDQRKIF 204 (549)
Q Consensus 126 k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~k~~~~~~~~-~~~~~~~~~~~YP~LqAaDil~~~~d~~~gG~DQ~~~~ 204 (549)
++.||+||+++++.+ ..+.+++.++..++++......+ ..++.++|.|+||+||||||+++++|++|+|.||++|+
T Consensus 77 k~~if~qS~~~e~~e---l~~~l~~~~t~~~l~r~~~~k~k~~~~~~~~g~l~YP~lqaaDil~~~~d~vpvG~DQ~~h~ 153 (328)
T TIGR00233 77 KTFIFLQSDYPEHYE---LAWLLSCQVTFGELKRMTQFKDKSQAENVPIGLFSYPVLQAADILLYQADLVPVGIDQDQHL 153 (328)
T ss_pred heEEEEcCCcHHHHH---HHHHHHccCCHHHHHhccCcchhccCCCCCchhhcchHHHHhhhhhcCCCeeecccccHHHH
Confidence 999999999974333 33345666666666553321111 12456899999999999999999999999999999999
Q ss_pred HHHHHhhhhcC------CCceeEEe---cccccCCCCCCccCCCCCCeeeccCCHHHHHHHHHhccCCCCC------CCc
Q psy5948 205 TLAEKYLPQLG------YAKRIHFM---NPMVPGLAGGKMSSSEEDSKIDLLDAPALVKKKLKKAFCEPGN------VED 269 (549)
Q Consensus 205 ~~~r~l~~~~~------~~~~~~l~---~plL~~l~G~KMSKS~~~s~I~L~Dsp~~i~kKI~~A~td~~~------~~~ 269 (549)
+++|++++++| +..|..++ .|.|+|++|+|||||+++|+|+|+|+|++|++||++|+|||+. .+.
T Consensus 154 elaRdia~r~n~~~~~~f~~P~~l~~~~~~~l~gl~~~KMSKS~~~s~I~L~D~~e~I~~KI~~a~td~~~~~~~~~~~~ 233 (328)
T TIGR00233 154 ELTRDLAERFNKKFKNFFPKPESLISKFFPRLMGLSGKKMSKSDPNSAIFLTDTPKQIKKKIRKAATDGGRVTLFEHREK 233 (328)
T ss_pred HHHHHHHHHhhhhcCcccCCChhhhccccCCCCCCCCCcCCCCCCCCeEeecCCHHHHHHHHHhcCCCCCCCcccCcCCC
Confidence 99999999999 44555554 4668888888999999988999999999999999999999964 133
Q ss_pred chhhchhhhheecccCCCcceeeeecccCCCCCCCCCHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCchhhhhcc
Q psy5948 270 NGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPADLKAAAEFYINRLLEPIRKKFES 345 (549)
Q Consensus 270 ~~v~~~~k~~lf~~~~~~~~~~i~~~~~~g~~~~~~~~eel~~~~~~g~l~~~dlK~~Lae~l~~~l~pir~~~~~ 345 (549)
+++.+++ ++|.++.. |.. ..+++++++++|.+|+++|++||++|++.|+++|+|+|++|++
T Consensus 234 ~g~~~l~--~i~~~~~~---~~~----------~~~~~~~~~~~~~~g~~~~~~lK~~lae~i~~~l~pirer~~~ 294 (328)
T TIGR00233 234 GGVPNLL--VIYQYLSF---FLI----------DDDKLKEIYEKYKSGKLLYGELKKALIEVLQEFLKEIQERRAE 294 (328)
T ss_pred CCCchHH--HHHHHhhc---cCC----------CcchHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444432 35665553 321 1247999999999999999999999999999999999999963
No 8
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=4e-55 Score=459.00 Aligned_cols=267 Identities=21% Similarity=0.250 Sum_probs=210.7
Q ss_pred ceEEEeecCCCccchhhhHHHHH-HHHHH-HcCCcEEEEEeCceeeecCCCChhHHHHHHHHHHHHHHHHHHHccCCCCC
Q psy5948 48 LKIYWGTATTGRPHIAYFVPMSK-IADFL-RAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPIS 125 (549)
Q Consensus 48 ~~v~~Gi~PTG~lHIGn~~~~~~-l~~l~-~~G~~v~ilIaD~~a~~~~~~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~ 125 (549)
.+||+||+|||.+|||||++.++ +.+++ +.|++++++||||||++. +.++ .+++.+.++ +.+.|+|||+||+
T Consensus 3 ~rvlSGiqPTG~lHLGNylGaik~~v~lq~q~~~~~~~~IADlHAlT~-~~dp---~~lr~~~~e--~aa~~LA~GlDPe 76 (431)
T PRK12284 3 TRVLTGITTTGTPHLGNYAGAIRPAIAASRQPGVESFYFLADYHALIK-CDDP---ARIQRSTLE--IAATWLAAGLDPE 76 (431)
T ss_pred eEEEEEecCCCcchHHHHHHHHHHHHHHHHhCCCcEEEEeechhhccC-CCCH---HHHHHHHHH--HHHHHHHhCCCcc
Confidence 57999999999999999999764 55565 469999999999999994 3444 445555555 3578999999999
Q ss_pred eeEEEEccccccccccHHH------HHHHHcccCHHHHHHhhHHHhhh-ccCCCcccchhhHHhhcccccccCcEEEecc
Q psy5948 126 KLKFVKGTDYQLSKEYTLD------VYRLSSVITEHDAKKAGAEVVKQ-VEHPLLSGLLYPGLQALDEEYLKVDAQFGGV 198 (549)
Q Consensus 126 k~~i~~qS~~~~~~~~~~~------~~~l~~~~t~~~~k~~~~~~~~~-~~~~~~~~~~YP~LqAaDil~~~~d~~~gG~ 198 (549)
|++||+||++++|.+++|- +.+|.|+++.++........... .++.++|.|+||+||||||++|++|++|+|.
T Consensus 77 k~~if~QSdvpeh~EL~wiL~~it~~g~L~Rm~q~K~k~~~~~~~g~~~~~~i~~Gll~YPvLqAADILly~ad~VPVG~ 156 (431)
T PRK12284 77 RVTFYRQSDIPEIPELTWLLTCVAGKGLLNRAHAYKAAVDKNVAAGEDPDAGVTAGLFMYPVLMAADILMFNAHKVPVGR 156 (431)
T ss_pred ceEEEECCcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHhhhccccCcccCcchHHhhchHHHHhhhhhcCCCEEEEcc
Confidence 9999999999999988764 34566664444321110000000 1345889999999999999999999999999
Q ss_pred cchhhHHHHHHhhhhcCCC--------c--eeEEecccccCCCCCCccCCCCCCeeeccCCHHHHHHHHHhccCCCCC--
Q psy5948 199 DQRKIFTLAEKYLPQLGYA--------K--RIHFMNPMVPGLAGGKMSSSEEDSKIDLLDAPALVKKKLKKAFCEPGN-- 266 (549)
Q Consensus 199 DQ~~~~~~~r~l~~~~~~~--------~--~~~l~~plL~~l~G~KMSKS~~~s~I~L~Dsp~~i~kKI~~A~td~~~-- 266 (549)
||+||++++|++++++|+. | ++..++++|+||+|+|||||++ |+|+|+|+|++|++||++|+||+..
T Consensus 157 DQ~qHlELaRdIA~rFN~~yg~~~F~~Pe~~i~~~~~~I~gLdg~KMSKS~~-n~I~L~Ds~~~I~kKI~~A~TDs~~~~ 235 (431)
T PRK12284 157 DQIQHIEMARDIAQRFNHLYGGEFFVLPEAVIEESVATLPGLDGRKMSKSYD-NTIPLFAPREELKKAIFSIVTDSRAPG 235 (431)
T ss_pred hhHHHHHHHHHHHHHHhhhcCCcccCCCccccccccccccCCCCccccCCCC-CEeeecCCHHHHHHHHhcCCCCCCCCC
Confidence 9999999999999998741 1 1222468999999999999997 5999999999999999999998643
Q ss_pred ----CCcchhhchhhhheecccCCCcceeeeecccCCCCCCCCCHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCchhhh
Q psy5948 267 ----VEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPADLKAAAEFYINRLLEPIRKK 342 (549)
Q Consensus 267 ----~~~~~v~~~~k~~lf~~~~~~~~~~i~~~~~~g~~~~~~~~eel~~~~~~g~l~~~dlK~~Lae~l~~~l~pir~~ 342 (549)
++.|++++ |++. |. + .+++++++++|.. +++|++||++|++.|+++|+|+|+|
T Consensus 236 ~~~~pe~snLl~--------i~~~---~~--------~---~~~~eel~~~~~~-g~~~g~~K~~Lae~i~~~L~PiRer 292 (431)
T PRK12284 236 EPKDTEGSALFQ--------LYQA---FA--------T---PEETAAFRQALAD-GIGWGDAKQRLFERIDRELAPMRER 292 (431)
T ss_pred CCCCCCcchHHH--------HHHH---hC--------C---cchHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444 4443 31 1 2579999999984 5999999999999999999999999
Q ss_pred hc
Q psy5948 343 FE 344 (549)
Q Consensus 343 ~~ 344 (549)
|.
T Consensus 293 ~~ 294 (431)
T PRK12284 293 YE 294 (431)
T ss_pred HH
Confidence 87
No 9
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=100.00 E-value=8.1e-54 Score=443.59 Aligned_cols=265 Identities=24% Similarity=0.270 Sum_probs=212.3
Q ss_pred ceEEEeecCCCccchhhhHHH-HHHHHHHHcCCcEEEEEeCceeeecCCCChhHHHHHHHHHHHHHHHHHHHccCCCCCe
Q psy5948 48 LKIYWGTATTGRPHIAYFVPM-SKIADFLRAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISK 126 (549)
Q Consensus 48 ~~v~~Gi~PTG~lHIGn~~~~-~~l~~l~~~G~~v~ilIaD~~a~~~~~~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~k 126 (549)
.++|+|++|||.+|||||+++ ..+.++|++|. ++|+||||||++++...+ .+.+....+ ..+.|+|+|+||++
T Consensus 3 ~~v~sG~~PTG~~HLGn~l~~~~~~~~lQ~~~~-~~i~IaD~ha~~~~~~~~---~~i~~~~~~--~~~~~lA~G~dp~k 76 (333)
T PRK12282 3 PIILTGDRPTGKLHLGHYVGSLKNRVALQNEHE-QFVLIADQQALTDNAKNP---EKIRRNILE--VALDYLAVGIDPAK 76 (333)
T ss_pred CEEEEeeCCCCcchHHHHHHHHHHHHHHHhCCC-EEEEEccchhHhCCCCCH---HHHHHHHHH--HHHHHHHhCcChhH
Confidence 489999999999999999995 45668888775 999999999999753333 345554444 34688999999999
Q ss_pred eEEEEccccccccccHH------HHHHHHcccCHHHHHHhhHHHhhhccCCCcccchhhHHhhcccccccCcEEEecccc
Q psy5948 127 LKFVKGTDYQLSKEYTL------DVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFGGVDQ 200 (549)
Q Consensus 127 ~~i~~qS~~~~~~~~~~------~~~~l~~~~t~~~~k~~~~~~~~~~~~~~~~~~~YP~LqAaDil~~~~d~~~gG~DQ 200 (549)
+.||+||+|+++.++.+ .+.++.++.+.++.... .+..++.++|.|+||+|||+||+++++|++|+|.||
T Consensus 77 ~~i~~qS~~~e~~~l~~~l~~~~~~~~l~r~~~~k~~~~~----~~~~~~~~~g~l~YP~lqaaDIl~~~~d~vpvG~DQ 152 (333)
T PRK12282 77 STIFIQSQIPELAELTMYYMNLVTVARLERNPTVKTEIAQ----KGFGRSIPAGFLTYPVSQAADITAFKATLVPVGDDQ 152 (333)
T ss_pred eEEEECCcchHHHHHHHHHHhhchHHHHhhchHHHHHHhc----cCCCCCCcchhhcchHHHHHHHHhhCCCEEEecccc
Confidence 99999999987665422 23455555444332110 011245688999999999999999999999999999
Q ss_pred hhhHHHHHHhhhhcCC--CceeEE-------ecccccCCCC-CCccCCCCCCeeeccCCHHHHHHHHHhccCC-------
Q psy5948 201 RKIFTLAEKYLPQLGY--AKRIHF-------MNPMVPGLAG-GKMSSSEEDSKIDLLDAPALVKKKLKKAFCE------- 263 (549)
Q Consensus 201 ~~~~~~~r~l~~~~~~--~~~~~l-------~~plL~~l~G-~KMSKS~~~s~I~L~Dsp~~i~kKI~~A~td------- 263 (549)
++|++++|++++++|. ..++.+ .+|+|+||+| +|||||+++ +|||+|+|++|++||++|+||
T Consensus 153 ~~h~~laRdiA~~~n~~~~~~~~~~p~~~~~~~~~i~~L~g~~KMSKS~~~-~I~L~D~pe~I~kKI~~A~td~~~~~~~ 231 (333)
T PRK12282 153 LPMIEQTREIVRRFNSLYGTDVLVEPEALLPEAGRLPGLDGKAKMSKSLGN-AIYLSDDADTIKKKVMSMYTDPNHIRVE 231 (333)
T ss_pred HHHHHHHHHHHHHHhhhcCCccccCchhcccCCCcccCCCCCCcCCCCCCC-eeeeeCCHHHHHHHHHhCcCCCCCccCC
Confidence 9999999999999983 323322 3689999998 899999974 999999999999999999998
Q ss_pred -CCCCCcchhhchhhhheecccCCCcceeeeecccCCCCCCCCCHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCchhhh
Q psy5948 264 -PGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPADLKAAAEFYINRLLEPIRKK 342 (549)
Q Consensus 264 -~~~~~~~~v~~~~k~~lf~~~~~~~~~~i~~~~~~g~~~~~~~~eel~~~~~~g~l~~~dlK~~Lae~l~~~l~pir~~ 342 (549)
+++++.|++++|+++ | . .+++++++++++|.+|+++|+|||++|+++|+++|+|+|++
T Consensus 232 ~~~~~~~~~l~~~~~~--f---~----------------~~~~~~e~l~~~y~~g~~~~~dlK~~lae~i~~~l~pirer 290 (333)
T PRK12282 232 DPGKVEGNVVFTYLDA--F---D----------------PDKAEVAELKAHYQRGGLGDVKCKRYLEEVLQELLAPIRER 290 (333)
T ss_pred CCCCCCcChHHHHHHH--h---C----------------CCCchHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 455667788777764 1 1 02468999999999999999999999999999999999998
Q ss_pred hc
Q psy5948 343 FE 344 (549)
Q Consensus 343 ~~ 344 (549)
|+
T Consensus 291 ~~ 292 (333)
T PRK12282 291 RA 292 (333)
T ss_pred HH
Confidence 76
No 10
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.4e-53 Score=441.23 Aligned_cols=269 Identities=19% Similarity=0.180 Sum_probs=209.6
Q ss_pred ceEEEeecCCCccchhhhHHHHH-HHHHHH-cCCcEEEEEeCceeeecCCCChhHHHHHHHHHHHHHHHHHHHccCCCCC
Q psy5948 48 LKIYWGTATTGRPHIAYFVPMSK-IADFLR-AGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPIS 125 (549)
Q Consensus 48 ~~v~~Gi~PTG~lHIGn~~~~~~-l~~l~~-~G~~v~ilIaD~~a~~~~~~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~ 125 (549)
.++|+||+|||.+|||||++.+. +.++|+ .|++++|+||||||++. ..++ .+.+.+.++. .+.|+|||+||+
T Consensus 4 ~~v~sGiqPTG~~HLGnylga~k~~~~lq~~~~~~~~~~IADlHalt~-~~~~---~~l~~~~~~~--~~~~lA~GlDP~ 77 (332)
T PRK12556 4 KIMLTGIKPTGYPHLGNYIGAIKPALQMAKNYEGKALYFIADYHALNA-VHDP---EQFRSYTREV--AATWLSLGLDPE 77 (332)
T ss_pred CEEEEEECCCCcchHHHHHHHHHHHHHHHHhcCCeEEEEEechhhccC-CCCH---HHHHHHHHHH--HHHHhheeeccc
Confidence 58999999999999999999765 566764 58889999999999874 3433 3455555442 468899999999
Q ss_pred eeEEEEccccccccccHH------HHHHHHcccCHHHHHHhhHHHhh--hccCCCcccchhhHHhhcccccccCcEEEec
Q psy5948 126 KLKFVKGTDYQLSKEYTL------DVYRLSSVITEHDAKKAGAEVVK--QVEHPLLSGLLYPGLQALDEEYLKVDAQFGG 197 (549)
Q Consensus 126 k~~i~~qS~~~~~~~~~~------~~~~l~~~~t~~~~k~~~~~~~~--~~~~~~~~~~~YP~LqAaDil~~~~d~~~gG 197 (549)
|+.||+||++++|.++.| .+.||.|+++.++ +........ ...+.++|.|+||+||||||+++++|++|||
T Consensus 78 k~~if~qS~v~~~~eL~~il~~~t~~g~L~R~~~~K~-k~~~~~~~~~~~~~~~~~gll~YPvLqAADIl~~~~d~VpvG 156 (332)
T PRK12556 78 DVIFYRQSDVPEIFELAWILSCLTPKGLMNRAHAYKA-KVDQNKEAGLDLDAGVNMGLYTYPILMAADILLFQATHVPVG 156 (332)
T ss_pred ceEEEECCCchHHHHHHHHHHccchHHHHHhccHHHH-HHhhhhhhccccCCCCcchhhhchHHHhhhhhhccCCEEEec
Confidence 999999999988876554 2456676644433 221110000 1124578999999999999999999999999
Q ss_pred ccchhhHHHHHHhhhhcCC------CceeEE---ecccccCCCCCCccCCCCCCeeeccCCHHHHHHHHHhccCCCCCC-
Q psy5948 198 VDQRKIFTLAEKYLPQLGY------AKRIHF---MNPMVPGLAGGKMSSSEEDSKIDLLDAPALVKKKLKKAFCEPGNV- 267 (549)
Q Consensus 198 ~DQ~~~~~~~r~l~~~~~~------~~~~~l---~~plL~~l~G~KMSKS~~~s~I~L~Dsp~~i~kKI~~A~td~~~~- 267 (549)
.||++|++++|++++++|. ..|..+ ++++|+||+|+|||||.+ ++|+|+|+|++|++||++|+||+...
T Consensus 157 ~DQ~qhleLtRdiA~rfn~~yg~~f~~P~~~~~~~~~~l~gLdg~KMSKS~~-n~I~L~D~p~~I~kKI~ka~Td~~~~~ 235 (332)
T PRK12556 157 KDQIQHIEIARDIATYFNHTFGDTFTLPEYVIQEEGAILPGLDGRKMSKSYG-NVIPLFAEQEKLRKLIFKIKTDSSLPN 235 (332)
T ss_pred cccHHHHHHHHHHHHHHHHhccccCCCceeccccccccccCCCCCCCCCCCC-CcccccCCHHHHHHHHHHhccCCCccc
Confidence 9999999999999999983 334333 589999999999999997 48999999999999999999987432
Q ss_pred --CcchhhchhhhheecccCCCcceeeeecccCCCCCCCCCHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCchhhhhc
Q psy5948 268 --EDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPADLKAAAEFYINRLLEPIRKKFE 344 (549)
Q Consensus 268 --~~~~v~~~~k~~lf~~~~~~~~~~i~~~~~~g~~~~~~~~eel~~~~~~g~l~~~dlK~~Lae~l~~~l~pir~~~~ 344 (549)
.++.+. ++|.+++. |. + .+++++++++|.. +++|++||++|++.|+++|.|+|++|+
T Consensus 236 ~~~~p~~~-----~l~~i~~~---~~--------~---~~~~eei~~~y~~-~~~~~~~K~~lae~i~~~l~pire~~~ 294 (332)
T PRK12556 236 EPKDPETS-----ALFTIYKE---FA--------T---EEEVQSMREKYET-GIGWGDVKKELFRVVDRELAGPREKYA 294 (332)
T ss_pred CCCCcchh-----HHHHHHHH---HC--------C---chhHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222 24444443 32 1 1468999999987 799999999999999999999999987
No 11
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.3e-53 Score=443.28 Aligned_cols=264 Identities=23% Similarity=0.282 Sum_probs=209.9
Q ss_pred ceEEEeecCCCccchhhhHHH-HHHHHHHHcCCcEEEEEeCceeeecCCCChhHHHHHHHHHHHHHHHHHHHccCCCCCe
Q psy5948 48 LKIYWGTATTGRPHIAYFVPM-SKIADFLRAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISK 126 (549)
Q Consensus 48 ~~v~~Gi~PTG~lHIGn~~~~-~~l~~l~~~G~~v~ilIaD~~a~~~~~~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~k 126 (549)
.++|+||+|||.+|||||++. ..+++||+. ++++++||||||++++ .++ .+.+.+.++ +.+.|+|+|+||++
T Consensus 2 ~~v~~G~~PTG~lHLG~~~g~~~~~~~lQ~~-~~~~~~IaD~ha~t~~-~~~---~~i~~~~~~--~~~~~lA~GlDp~k 74 (333)
T PRK00927 2 KRVLSGIQPTGKLHLGNYLGAIKNWVELQDE-YECFFCIADLHALTVP-QDP---EELRENTRE--LAADYLACGIDPEK 74 (333)
T ss_pred CEEEEeeCCCccchHHhHHHHHHHHHHHHhc-CCeEEEEecHHHHhCC-CCH---HHHHHHHHH--HHHHHHeEccChhh
Confidence 589999999999999999964 456777765 9999999999999975 333 445554444 24688999999999
Q ss_pred eEEEEccccccccccHHH------HHHHHcccCHHHHHHhhHHHhhhccCCCcccchhhHHhhcccccccCcEEEecccc
Q psy5948 127 LKFVKGTDYQLSKEYTLD------VYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFGGVDQ 200 (549)
Q Consensus 127 ~~i~~qS~~~~~~~~~~~------~~~l~~~~t~~~~k~~~~~~~~~~~~~~~~~~~YP~LqAaDil~~~~d~~~gG~DQ 200 (549)
+.||+||+|+++.+++|- +.+|.++.+.++. . .+..++.++|.|+||+|||||++++++|++|+|.||
T Consensus 75 ~~if~qS~~~~~~el~~~l~~~~~~~~l~r~~~~k~~-~-----~~~~~~~~~g~~~YP~lQaaDil~~~~divpvG~DQ 148 (333)
T PRK00927 75 STIFVQSHVPEHAELAWILNCITPLGELERMTQFKDK-S-----AKQKENVSAGLFTYPVLMAADILLYKADLVPVGEDQ 148 (333)
T ss_pred eEEEEeCCCchhHHHHHHHHhhhhHHHHHhhhhHHHH-H-----hccCCCCCcHhhhcHHHHHHHHHhcCCCEEeeccch
Confidence 999999999888776553 2344444333221 1 012356789999999999999999999999999999
Q ss_pred hhhHHHHHHhhhhcCC-------CceeEEe--cccccCCCCC--CccCCCCC--CeeeccCCHHHHHHHHHhccCCCCCC
Q psy5948 201 RKIFTLAEKYLPQLGY-------AKRIHFM--NPMVPGLAGG--KMSSSEED--SKIDLLDAPALVKKKLKKAFCEPGNV 267 (549)
Q Consensus 201 ~~~~~~~r~l~~~~~~-------~~~~~l~--~plL~~l~G~--KMSKS~~~--s~I~L~Dsp~~i~kKI~~A~td~~~~ 267 (549)
++|++++|++++++|+ .|...++ +|+|+||+|+ |||||.++ |+|+|+|+|++|++||++|+||++.+
T Consensus 149 ~~h~elaRdia~~~n~~~~~~f~~P~~i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D~~~~I~~KI~~a~td~~~~ 228 (333)
T PRK00927 149 KQHLELTRDIARRFNNLYGEVFPVPEPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLDDPKTIAKKIKKAVTDSERL 228 (333)
T ss_pred HHHHHHHHHHHHHhhhhccccCCCChhhhccccccccCCCCCCCCCCCCCCCCCCeEEeeCCHHHHHHHHHhCCCCCCcc
Confidence 9999999999999974 2333332 4899999995 99999986 89999999999999999999998542
Q ss_pred --------CcchhhchhhhheecccCCCcceeeeecccCCCCCCCCCHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCch
Q psy5948 268 --------EDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPADLKAAAEFYINRLLEPI 339 (549)
Q Consensus 268 --------~~~~v~~~~k~~lf~~~~~~~~~~i~~~~~~g~~~~~~~~eel~~~~~~g~l~~~dlK~~Lae~l~~~l~pi 339 (549)
.++.+ +++|.|++. |. +.++++++++|.+|+++|++||++|++.|+++|.|+
T Consensus 229 ~~~~~~~~~~p~~-----~~l~~~~~~---~~------------~~~~eel~~~~~~g~~~~~~lK~~la~~i~~~l~pi 288 (333)
T PRK00927 229 REIRYDLPNKPEV-----SNLLTIYSA---LS------------GESIEELEAEYEAGGKGYGDFKKDLAEAVVEFLAPI 288 (333)
T ss_pred cccccCCCCCCcc-----ccHHHHHHH---hC------------CCCHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHH
Confidence 11222 134444443 32 268999999999999999999999999999999999
Q ss_pred hhhhc
Q psy5948 340 RKKFE 344 (549)
Q Consensus 340 r~~~~ 344 (549)
|++|+
T Consensus 289 re~~~ 293 (333)
T PRK00927 289 RERYE 293 (333)
T ss_pred HHHHH
Confidence 99997
No 12
>PLN02886 aminoacyl-tRNA ligase
Probab=100.00 E-value=4.8e-53 Score=440.74 Aligned_cols=264 Identities=19% Similarity=0.192 Sum_probs=211.1
Q ss_pred CceEEEeecCCCccchhhhHHHH-HHHHHHHcCCcEEEEEeCceeeecCCCChhHHHHHHHHHHHHHHHHHHHccCCCCC
Q psy5948 47 DLKIYWGTATTGRPHIAYFVPMS-KIADFLRAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPIS 125 (549)
Q Consensus 47 ~~~v~~Gi~PTG~lHIGn~~~~~-~l~~l~~~G~~v~ilIaD~~a~~~~~~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~ 125 (549)
..++|+||+|||.+|||||++.+ .+.++|+ |++++|+||||||++.. . +..+++...++ +.+.|+|||+||+
T Consensus 46 ~~~v~sGiqPSG~lHLGnylGai~~~v~lQ~-~~~~~~~IADlHAlt~~-~---~~~~lr~~~~~--~~a~~lA~GlDP~ 118 (389)
T PLN02886 46 KKRVVSGVQPTGSIHLGNYLGAIKNWVALQE-TYDTFFCVVDLHAITLP-H---DPRELGKATRS--TAAIYLACGIDPS 118 (389)
T ss_pred CCeEEEEECCCCccHHHHHHHHHHHHHHHhc-cCCEEEEEecHHHhhCC-C---CHHHHHHHHHH--HHHHHHHcCcCcc
Confidence 45799999999999999999754 4666665 89999999999999963 3 33455555554 3478999999999
Q ss_pred eeEEEEccccccccccHHH------HHHHHcccCHHHHHHhhHHHhhhccCCCcccchhhHHhhcccccccCcEEEeccc
Q psy5948 126 KLKFVKGTDYQLSKEYTLD------VYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFGGVD 199 (549)
Q Consensus 126 k~~i~~qS~~~~~~~~~~~------~~~l~~~~t~~~~k~~~~~~~~~~~~~~~~~~~YP~LqAaDil~~~~d~~~gG~D 199 (549)
|+.||+||++++|.+++|- +.+|.|+++.++.... ...+..++|.|+||+|||||||++++|++|+|.|
T Consensus 119 ks~if~QS~v~e~~eL~wil~~~t~~g~L~R~~q~K~k~~~-----~~~~~~~~gll~YPvLqAADILl~~a~~VPVG~D 193 (389)
T PLN02886 119 KASVFVQSHVPAHAELMWLLSCSTPIGWLNKMIQFKEKSRK-----AGDENVGVGLLTYPVLMASDILLYQADLVPVGED 193 (389)
T ss_pred ceEEEEeCCCchhHHHHHHHHhhCcHHHHHhcchHHHHHHh-----cCCCCCChHhhhChHHHHhhhhhcCCCeEEEccc
Confidence 9999999999998887653 4577888665443211 0124568999999999999999999999999999
Q ss_pred chhhHHHHHHhhhhcCCC------------------ceeEEe---cccccCCCC--CCccCCCCC--CeeeccCCHHHHH
Q psy5948 200 QRKIFTLAEKYLPQLGYA------------------KRIHFM---NPMVPGLAG--GKMSSSEED--SKIDLLDAPALVK 254 (549)
Q Consensus 200 Q~~~~~~~r~l~~~~~~~------------------~~~~l~---~plL~~l~G--~KMSKS~~~--s~I~L~Dsp~~i~ 254 (549)
|++|++++|++++++|+. .|..+. +++|++|+| +|||||+++ |+|+|+|+|++|+
T Consensus 194 Q~qH~eLtRdiA~rfN~~y~~~~~~~~~~~~~~~f~~P~~l~~~~~~ri~~L~~g~~KMSKS~p~~~s~I~L~Ds~e~I~ 273 (389)
T PLN02886 194 QKQHLELTRDIAERVNNLYGGRKWKKLGGRGGSVFKVPEALIPPAGARVMSLTDGTSKMSKSAPSDQSRINLLDPPDVIA 273 (389)
T ss_pred hHHHHHHHHHHHHHHhhhccccccccccccCCceecCCeeccCcccceeeeCCCCCCcCCCCCCCCCCeEEecCCHHHHH
Confidence 999999999999998741 122232 347889965 699999974 7999999999999
Q ss_pred HHHHhccCCCCC------CCcchhhchhhhheecccCCCcceeeeecccCCCCCCCCCHHHHHHHHHcCCCChHHHHHHH
Q psy5948 255 KKLKKAFCEPGN------VEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPADLKAAA 328 (549)
Q Consensus 255 kKI~~A~td~~~------~~~~~v~~~~k~~lf~~~~~~~~~~i~~~~~~g~~~~~~~~eel~~~~~~g~l~~~dlK~~L 328 (549)
+||++|+||+.. ++.+++.+ +|.+|.. |. ..++++++++|. +++|++||+.|
T Consensus 274 kKI~~a~TD~~~~i~~~~p~~p~v~n-----l~~i~~~---~~------------~~~~eei~~~~~--~~~~g~~K~~L 331 (389)
T PLN02886 274 NKIKRCKTDSFPGLEFDNPERPECNN-----LLSIYQL---VT------------GKTKEEVLAECG--DMRWGDFKPLL 331 (389)
T ss_pred HHHhcCCCCCCCCccCCCCCCccccc-----HHHHHHH---cc------------CCCHHHHHHHhc--CCCCchHHHHH
Confidence 999999999742 34556655 4555554 32 257899999996 57999999999
Q ss_pred HHHHHHhcCchhhhhc
Q psy5948 329 EFYINRLLEPIRKKFE 344 (549)
Q Consensus 329 ae~l~~~l~pir~~~~ 344 (549)
++.|+++|.|||+||+
T Consensus 332 ae~I~~~L~Pirer~~ 347 (389)
T PLN02886 332 TDALIEHLSPIQVRYE 347 (389)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999987
No 13
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=2.5e-52 Score=422.42 Aligned_cols=257 Identities=37% Similarity=0.530 Sum_probs=218.7
Q ss_pred ceEEEeecCCC-ccchhhhHHHHHHHHHHHcCCcEEEEEeCceeeecCCCCh------hHHHHHHHHHHHHHHHHHHHcc
Q psy5948 48 LKIYWGTATTG-RPHIAYFVPMSKIADFLRAGCEVTILFADLHAYLDNMKAP------WELLALRTKYYEESIKAMLESI 120 (549)
Q Consensus 48 ~~v~~Gi~PTG-~lHIGn~~~~~~l~~l~~~G~~v~ilIaD~~a~~~~~~~~------~~~~~~~~~~~~~~i~~~l~a~ 120 (549)
.++|+||+||| .+|||||++++.++++|++|++++++|||+||++++++++ .+..+.+.+... +.+.++|+
T Consensus 1 ~~iy~G~~PTg~~lHLG~~~~~~~~~~lq~~g~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~i~~~~~~--~~~~~~a~ 78 (269)
T cd00805 1 LKVYIGFDPTAPSLHLGHLVPLMKLRDFQQAGHEVIVLIGDATAMIGDPSGKSEERKLLDLELIRENAKY--YKKQLKAI 78 (269)
T ss_pred CeEEEeeCCCCCcccHHHHHHHHHHHHHHHCCCeEEEEECCCeeecCCCCCccccccCCCHHHHHHHHHH--HHHHHHHH
Confidence 37999999999 6999999999999999999999999999999999987521 112334443333 34678899
Q ss_pred CCC--CCeeEEEEccccccccccHHHHHHHHcccCHHHHHHhhHHHhh--hccCCCcccchhhHHhhcccccccCcEEEe
Q psy5948 121 DVP--ISKLKFVKGTDYQLSKEYTLDVYRLSSVITEHDAKKAGAEVVK--QVEHPLLSGLLYPGLQALDEEYLKVDAQFG 196 (549)
Q Consensus 121 Gld--p~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~k~~~~~~~~--~~~~~~~~~~~YP~LqAaDil~~~~d~~~g 196 (549)
|++ |+++.||+||+|+.+ .+|.+++++++.++..++.+......+ ..++.++++|+||+|||+|++++++++|||
T Consensus 79 g~~~~p~k~~i~~~s~~~~~-l~~~~~l~l~~~~~~~~l~~~~~~k~r~~~~~~~~~~~~~YP~lQaaDi~~l~~~l~~~ 157 (269)
T cd00805 79 LDFIPPEKAKFVNNSDWLLS-LYTLDFLRLGKHFTVNRMLRRDAVKVRLEEEEGISFSEFIYPLLQAYDFVYLDVDLQLG 157 (269)
T ss_pred HccCCCcceEEEEchHhhcc-CCHHHHHHHHhhCcHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhHHHHhCCeeEe
Confidence 996 999999999999877 788999999999998887764432222 235678999999999999999999999999
Q ss_pred cccchhhHHHHHHhhhhcCCCceeEEecccccCCCCCCccCCCCCCe-eeccCCHHHHHHHHHhccCCCCCCCcchhhch
Q psy5948 197 GVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGGKMSSSEEDSK-IDLLDAPALVKKKLKKAFCEPGNVEDNGVLSF 275 (549)
Q Consensus 197 G~DQ~~~~~~~r~l~~~~~~~~~~~l~~plL~~l~G~KMSKS~~~s~-I~L~Dsp~~i~kKI~~A~td~~~~~~~~v~~~ 275 (549)
|.|||+|++++|++++++++.+++++++|+|++++|+|||||.+++. |++.|+|++|++||++|+|+ +|.+|
T Consensus 158 G~DQ~~~i~~~rd~a~r~~~~~~~~l~~~ll~~l~G~KMSKS~~~~~~i~l~dsp~~i~~Ki~~a~~~-------~v~~~ 230 (269)
T cd00805 158 GSDQRGNITLGRDLIRKLGYKKVVGLTTPLLTGLDGGKMSKSEGNAIWDPVLDSPYDVYQKIRNAFDP-------DVLEF 230 (269)
T ss_pred cHHHHHHHHHHHHHHHHhCCCCcEEEeeccccCCCCCcccCCCCCcccccCCCCHHHHHHHHHcCCcH-------HHHHH
Confidence 99999999999999999999999999999999999999999999755 69999999999999999998 67888
Q ss_pred hhhheecccCCCcceeeeecccCCCCCCCCCHHHHHHHHHcCCCChHHHHHHHHHHHHHh
Q psy5948 276 LKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPADLKAAAEFYINRL 335 (549)
Q Consensus 276 ~k~~lf~~~~~~~~~~i~~~~~~g~~~~~~~~eel~~~~~~g~l~~~dlK~~Lae~l~~~ 335 (549)
++++.| +. ++++++|+++|.+|.+ ++++|++||++|+++
T Consensus 231 l~~~~~--~~------------------~~~~eel~~~~~~~~~-~~~~K~~la~~i~~l 269 (269)
T cd00805 231 LKLFTF--LD------------------YEEIEELEEEHAEGPL-PRDAKKALAEELTKL 269 (269)
T ss_pred HHHHHc--CC------------------HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhC
Confidence 874333 11 3579999999998877 999999999999863
No 14
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=100.00 E-value=2.1e-51 Score=436.56 Aligned_cols=303 Identities=22% Similarity=0.285 Sum_probs=244.2
Q ss_pred HHHHHHHHH-cccccccC-HHHHHHHHhcCCceEEEeecCCCc-cchhhhHHHHHHHHHHHcCCcEEEEEeCceeeecCC
Q psy5948 19 FDEKKQLIT-RNLQEFLG-EDRLNVILKERDLKIYWGTATTGR-PHIAYFVPMSKIADFLRAGCEVTILFADLHAYLDNM 95 (549)
Q Consensus 19 ~~~~~~li~-R~~~ei~~-~~~L~~~l~~~~~~v~~Gi~PTG~-lHIGn~~~~~~l~~l~~~G~~v~ilIaD~~a~~~~~ 95 (549)
..+.+++|+ |++.+..+ +++|+++++++++++|+||+|||+ ||||||++++.+++||++|++++++|||+||+++||
T Consensus 3 ~~~~l~~l~~Rg~~~~~~~~~~l~~~l~~~~~~vy~G~dPTg~slHlGhlv~l~~l~~lQ~~G~~~~~ligd~ta~igDp 82 (408)
T PRK05912 3 MSNLLEELKERGLIEQITDEEELEEKLAKEPLRIYLGFDPTAPSLHLGHLVPLLKLRRFQDAGHKPIALIGGFTGMIGDP 82 (408)
T ss_pred HHHHHHHHHhCCCeeecCCHHHHHHHhhCCCCEEEEeecCCCCCccHHhHHHHHHHHHHHHCCCcEEEEEcCceeEcCCC
Confidence 356777776 99877666 888999998889999999999996 999999999999999999999999999999999988
Q ss_pred CChhH------HHHHHHHHHHHHHHHHHHccCCCCCe--eEEEEccccccccccHHHHHH-HHcccCHHHHHHhh--HHH
Q psy5948 96 KAPWE------LLALRTKYYEESIKAMLESIDVPISK--LKFVKGTDYQLSKEYTLDVYR-LSSVITEHDAKKAG--AEV 164 (549)
Q Consensus 96 ~~~~~------~~~~~~~~~~~~i~~~l~a~Gldp~k--~~i~~qS~~~~~~~~~~~~~~-l~~~~t~~~~k~~~--~~~ 164 (549)
+++.. ....+.+. .. +... .++|+||++ +.||+||+|..+.++ .++++ ++++++..++.... ..+
T Consensus 83 sgk~~~r~~l~~e~i~~n~-~~-i~~q-l~~~ld~~k~~~~i~~nsd~~~~~~~-~~~l~~v~~~~~v~~m~~~~~~k~r 158 (408)
T PRK05912 83 SGKSETRKLLTREQVAENA-ET-IKEQ-LFKFLDFEKDGAEIVNNSDWLGKLNA-IDFLRDLGKHFTVNRMLERDDFKKR 158 (408)
T ss_pred CCCchhhccCCHHHHHHHH-HH-HHHH-HHHhcCcCcCcEEEEECCCcCCcccH-HHHHHHHhhhccHHHHhhcchHHHH
Confidence 74321 11222221 11 2222 378999999 999999999766654 45555 88888887775422 121
Q ss_pred hhhccCCCcccchhhHHhhcccccc----cCcEEEecccchhhHHHHHHhhhhcCCCceeEEecccccCCCCCCccCCCC
Q psy5948 165 VKQVEHPLLSGLLYPGLQALDEEYL----KVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGGKMSSSEE 240 (549)
Q Consensus 165 ~~~~~~~~~~~~~YP~LqAaDil~~----~~d~~~gG~DQ~~~~~~~r~l~~~~~~~~~~~l~~plL~~l~G~KMSKS~~ 240 (549)
.....+.++++|+||+|||||++++ +|++|+||.|||+|++++|+++++++..+++++++|+|++++|+|||||.+
T Consensus 159 ~~~~~~is~~ef~Yp~LQa~D~l~l~~~~~~~i~~gG~DQ~~ni~~grdla~r~~~~~~~~l~~plL~~~~G~KMsKS~~ 238 (408)
T PRK05912 159 LREGQGISFTEFLYPLLQGYDFVALNKRYGCDLQLGGSDQWGNILSGRDLQRRYGGKPQFGLTMPLLTGLDGKKMGKSEG 238 (408)
T ss_pred hccCCCCchhhhhhHHHHHhhHHHHhccCCCCEEeccHHHHHHHHHHHHHHHHhCCCCeEEEecCCcCCCCCCcccCCCC
Confidence 2223567999999999999999999 999999999999999999999999998899999999999999999999985
Q ss_pred CCeeeccC---CHHHHHHHHHhccCCCCCCCcchhhchhhhheecccCCCcceeeeecccCCCCCCCCCHHHHHHHHHcC
Q psy5948 241 DSKIDLLD---APALVKKKLKKAFCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQ 317 (549)
Q Consensus 241 ~s~I~L~D---sp~~i~kKI~~A~td~~~~~~~~v~~~~k~~lf~~~~~~~~~~i~~~~~~g~~~~~~~~eel~~~~~~g 317 (549)
++|||+| +|+++++||+++ .++.+.+|+++ |+.+. .+++++++++|..|
T Consensus 239 -naI~L~d~~tsp~~i~qki~~~-------~D~~v~~~l~~--~t~~~------------------~~ei~~l~~~~~~g 290 (408)
T PRK05912 239 -NAVWLDEEKTSPYEMYQKWMNI-------SDADVWRYLKL--LTFLS------------------LEEIEELEEELAEG 290 (408)
T ss_pred -CceeCCCCCCCHHHHHHHHhcC-------ChHHHHHHHHH--HhcCC------------------HHHHHHHHHHHhcC
Confidence 6999999 999999999984 57788888873 33222 35799999999887
Q ss_pred CCChHHHHHHHHHHHHHhcCchhhhhcchHHHHHhhhcCC
Q psy5948 318 ELHPADLKAAAEFYINRLLEPIRKKFESKELKDLTSKAYP 357 (549)
Q Consensus 318 ~l~~~dlK~~Lae~l~~~l~pir~~~~~~e~~~~~~~~~~ 357 (549)
. +|+++|++||++|+++++...+..+ +++..+..|.
T Consensus 291 ~-~~~~~Kk~LA~~v~~~lhg~~~~~~---a~~~~~~~f~ 326 (408)
T PRK05912 291 P-NPREAKKVLAEEITALVHGEEAAEA---AEEAFEALFG 326 (408)
T ss_pred C-ChHHHHHHHHHHHHHHHCCHHHHHH---HHHHHHHHhc
Confidence 7 9999999999999999998655433 3333444453
No 15
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=100.00 E-value=3.2e-53 Score=434.69 Aligned_cols=282 Identities=30% Similarity=0.437 Sum_probs=225.3
Q ss_pred cCCceEEEeecCCCccchhhhHHHHHHHHHHHcCCcEEEEEeCceeeecCCC-ChhHHHHHHHHHHHHHHHHHHHccCCC
Q psy5948 45 ERDLKIYWGTATTGRPHIAYFVPMSKIADFLRAGCEVTILFADLHAYLDNMK-APWELLALRTKYYEESIKAMLESIDVP 123 (549)
Q Consensus 45 ~~~~~v~~Gi~PTG~lHIGn~~~~~~l~~l~~~G~~v~ilIaD~~a~~~~~~-~~~~~~~~~~~~~~~~i~~~l~a~Gld 123 (549)
++++++|+||+|||+|||||+++++.+++||++|++++|+|||+||+++++. +.+...+.+..++.+. ..++|+|+|
T Consensus 3 ~~~~~~y~G~~PTg~lHlG~l~~~~~~~~lq~~g~~~~i~iaD~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~la~g~d 80 (292)
T PF00579_consen 3 NKPFRVYTGIDPTGDLHLGHLVPIMKLIWLQKAGFKVIILIADLHALLGDPSKGDERKIRSRAEYNIND--KAILALGLD 80 (292)
T ss_dssp HSSEEEEEEEESSSS-BHHHHHHHHHHHHHHHTTSEEEEEEEHHHHHHTTTTGSSHHHHHHHHHHHHHH--HHHHHTTSH
T ss_pred CCCcEEEEeECCCCcccchHHHHHHHHHHHHhcCCccceEecchhhcccCcccccHHHHHHHHHHHHHH--HHHHHhccC
Confidence 4788999999999999999999999999999999999999999999999876 3344333444444332 237799999
Q ss_pred CCeeEEEEccccccccccHHHHHHHHcccCHHHHHHhhH--HHhhhccCCCcccchhhHHhhcccccccCcEEEecccch
Q psy5948 124 ISKLKFVKGTDYQLSKEYTLDVYRLSSVITEHDAKKAGA--EVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFGGVDQR 201 (549)
Q Consensus 124 p~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~k~~~~--~~~~~~~~~~~~~~~YP~LqAaDil~~~~d~~~gG~DQ~ 201 (549)
|+++.||+||+|+.+.++++.+..+++..+..++..... ..++..++.++++|+||+|||+|++++++++||||.||+
T Consensus 81 ~~k~~i~~~s~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Yp~lQaaD~~~l~~~~~~~G~DQ~ 160 (292)
T PF00579_consen 81 PEKTEIFRQSDWPEHMELWWFLSDVARLFSLNRMLRFKDVKKRLKNGEGISLGEFSYPLLQAADILLLKADLVPGGIDQR 160 (292)
T ss_dssp TTTEEEEEGHHHHCHHHHHHHHHHHHBHHHHHHHHHHHHHHHHHSSTTTSBHHHHHHHHHHHHHHHHTTHSEEEEEGGGH
T ss_pred ccceEEEeCCCcccccchhhhhcccccccchhhhhhhcccccccccccCcceeeEEcccccccceeeeccccccccchHH
Confidence 999999999999888888876666666544444433221 223333467899999999999999999999999999999
Q ss_pred hhHHHHHHhhhhcCCC----ceeEEecccccCCCCC-CccCCCCCCeeeccCCHHHHHHHHHhccCCCCCCCcchhhchh
Q psy5948 202 KIFTLAEKYLPQLGYA----KRIHFMNPMVPGLAGG-KMSSSEEDSKIDLLDAPALVKKKLKKAFCEPGNVEDNGVLSFL 276 (549)
Q Consensus 202 ~~~~~~r~l~~~~~~~----~~~~l~~plL~~l~G~-KMSKS~~~s~I~L~Dsp~~i~kKI~~A~td~~~~~~~~v~~~~ 276 (549)
+|++++|+++++++.. +|.++++|++++++|. |||||.++++|||+|+++++++||++|+|++++ +++.....
T Consensus 161 ~~~~l~rd~a~k~~~~~~~~~p~~l~~~~l~~l~G~~KMSKS~~ns~I~L~d~~~~i~~Ki~~a~~~~~~--~~~~~~~~ 238 (292)
T PF00579_consen 161 GHIELARDLARKFNYKEIFPKPAGLTSPLLPGLDGQKKMSKSDPNSAIFLDDSPEEIRKKIKKAFCDPDR--ENPRLLKG 238 (292)
T ss_dssp HHHHHHHHHHHHHTHHSTSSS-EEEEETCBBSTTSSSBTTTTTTGGS-BTTTTHHHHHHHHHHSHTSTTS--HHHHHHHH
T ss_pred HHHHHHHHHHhhhcccccccCchheeeccccccCCccccCccCCccEEEEeccchhHHHHHHHHhhCCCc--cccccccc
Confidence 9999999999999988 9999999999999997 999999988999999999999999999999977 44444444
Q ss_pred hhheecccCCCcceeeeecccCCCCCCCCCHHHHHHHHHcCCCChHHHHHHHHHHHHHhcC
Q psy5948 277 KHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPADLKAAAEFYINRLLE 337 (549)
Q Consensus 277 k~~lf~~~~~~~~~~i~~~~~~g~~~~~~~~eel~~~~~~g~l~~~dlK~~Lae~l~~~l~ 337 (549)
++.+.+ +.+++.+.++++..+.+++++.++|..|.+|++++|++++++++++|+
T Consensus 239 ~~~~~~-------~~i~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~K~~~~e~~~~~le 292 (292)
T PF00579_consen 239 RPFISP-------FLIERLEAFHGNDDYRSLEELLADYVSGELHPGDLKKALAEALNEFLE 292 (292)
T ss_dssp HHTHHH-------HHHHHHHHHHHHHHESHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCH-------HHHHHHHHhcCCcchHHHHHHHHHHccCCcChHHHHHHHHHHHHHhhC
Confidence 444333 011222223333335679999999999999999999999999999874
No 16
>PLN02486 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.3e-51 Score=431.98 Aligned_cols=294 Identities=17% Similarity=0.260 Sum_probs=241.3
Q ss_pred HHHHHHcccccccCHHHHHHHHh----cCCceEEEeecCCCc-cchhhhHHHHHHHHHHHc-CCcEEEEEeCceeeecCC
Q psy5948 22 KKQLITRNLQEFLGEDRLNVILK----ERDLKIYWGTATTGR-PHIAYFVPMSKIADFLRA-GCEVTILFADLHAYLDNM 95 (549)
Q Consensus 22 ~~~li~R~~~ei~~~~~L~~~l~----~~~~~v~~Gi~PTG~-lHIGn~~~~~~l~~l~~~-G~~v~ilIaD~~a~~~~~ 95 (549)
.+.++||++ +++|++|+.+|+ ++++++|+|++|||. |||||+++++.+++||++ |+.++|+|+|+++++.+
T Consensus 46 ~h~~lrRgi--~~~hrd~~~~l~~~e~~~~~~vYtG~~PSg~~lHlGHlv~~~~~~~lQ~~~~~~~~I~iaD~e~~~~~- 122 (383)
T PLN02486 46 AHPFLRRGV--FFAHRDLEEILDAYEKGEKFYLYTGRGPSSEALHLGHLIPFMFTKYLQDAFKVPLVIQLTDDEKFLWK- 122 (383)
T ss_pred CCcccccce--eeeccCHHHHHHHHhcCCCeEEEeCCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEecCHHHHhhc-
Confidence 456889999 999999888776 478999999999996 999999999999999987 78999999999999875
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHccCCCCCeeEEEEccccccccccHHHHHHHHcccCHHHHHHhhHHHhhhccCCCccc
Q psy5948 96 KAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLSKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSG 175 (549)
Q Consensus 96 ~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~k~~~~~~~~~~~~~~~~~ 175 (549)
...+ ++.+....++ .+.++|+|+||+++.||.|++| ....+|..++++++++|.++++... ...++.++|+
T Consensus 123 ~~~~--e~i~~~~~en--~~~iiA~G~dp~kt~I~s~~~~-~~~~~~~~~~~l~r~~t~~~~~~~~----gf~~~~~ig~ 193 (383)
T PLN02486 123 NLSV--EESQRLAREN--AKDIIACGFDVERTFIFSDFDY-VGGAFYKNMVKIAKCVTLNQVRGIF----GFSGEDNIGK 193 (383)
T ss_pred CCCH--HHHHHHHHHH--HHHHHHhCCCCcceEEEeccHH-HhHhHHHHHHHHHhhCcHHHHHHhh----CcCCCCCchh
Confidence 3333 3444433343 3678899999999999988887 3345788899999999999886532 1124567899
Q ss_pred chhhHHhhccccc------ccC-----cEEEecccchhhHHHHHHhhhhcCCCceeEEecccccCCCC--CCccCCCCCC
Q psy5948 176 LLYPGLQALDEEY------LKV-----DAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAG--GKMSSSEEDS 242 (549)
Q Consensus 176 ~~YP~LqAaDil~------~~~-----d~~~gG~DQ~~~~~~~r~l~~~~~~~~~~~l~~plL~~l~G--~KMSKS~~~s 242 (549)
++||+|||||+++ ++. +++|+|.||++|++++|++++++|+.+|..++++++|+|+| +|||||.+++
T Consensus 194 ~~YP~lQaadi~~~~~~~l~~~~~~~~~lVPvG~DQd~~~~ltRdia~r~~~~kp~~~~~~~lp~L~g~~~KMSkS~~ns 273 (383)
T PLN02486 194 ISFPAVQAAPSFPSSFPHLFGGKDKLRCLIPCAIDQDPYFRMTRDVAPRLGYYKPALIESRFFPALQGESGKMSASDPNS 273 (383)
T ss_pred hhhHHHHHhhhhhhccHHHhCCCcCCcceeecccchHHHHHHHHHHHHHhCCCCcceeccccccCCCCCCCcCcCcCCCC
Confidence 9999999999983 444 89999999999999999999999987788888999999998 7999999988
Q ss_pred eeeccCCHHHHHHHHHh-ccCCCCCC--------CcchhhchhhhheecccCCCcceeeeecccCCCCCCCCCHHHHHHH
Q psy5948 243 KIDLLDAPALVKKKLKK-AFCEPGNV--------EDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQV 313 (549)
Q Consensus 243 ~I~L~Dsp~~i~kKI~~-A~td~~~~--------~~~~v~~~~k~~lf~~~~~~~~~~i~~~~~~g~~~~~~~~eel~~~ 313 (549)
+|||+|+|+++++||++ ||||++.+ .++.+. ++|.++.. |. +. .+++++++++
T Consensus 274 aI~L~D~p~~i~~KI~k~A~t~~~~t~~~~~~~gg~p~v~-----~~~~~l~~---f~-~d---------d~~~eei~~~ 335 (383)
T PLN02486 274 AIYVTDTPKEIKNKINKYAFSGGQDTVEEHRELGANLEVD-----IPWKYLNF---FL-ED---------DAELERIKKE 335 (383)
T ss_pred eeeccCCHHHHHHHHhcCCCCCCCCcccccccCCCCCccc-----hHHHHHHH---Hc-CC---------chHHHHHHHH
Confidence 99999999999999999 99987542 111111 23444442 31 11 1479999999
Q ss_pred HHcCCCChHHHHHHHHHHHHHhcCchhhhhcc
Q psy5948 314 FAKQELHPADLKAAAEFYINRLLEPIRKKFES 345 (549)
Q Consensus 314 ~~~g~l~~~dlK~~Lae~l~~~l~pir~~~~~ 345 (549)
|.+|+++|++||++|++.|+++|+|+|+++++
T Consensus 336 y~~G~l~~ge~K~~lae~i~~~l~~~qerr~~ 367 (383)
T PLN02486 336 YGSGRMLTGEVKKRLIEVLTEIVERHQRARAA 367 (383)
T ss_pred hccCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999884
No 17
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3e-51 Score=426.61 Aligned_cols=264 Identities=20% Similarity=0.208 Sum_probs=205.4
Q ss_pred ceEEEeecCCCccchhhhHHHHH-HHHHHHcCCcEEEEEeCceeeecCCCChhHHHHHHHHHHHHHHHHHHHccCCCCCe
Q psy5948 48 LKIYWGTATTGRPHIAYFVPMSK-IADFLRAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISK 126 (549)
Q Consensus 48 ~~v~~Gi~PTG~lHIGn~~~~~~-l~~l~~~G~~v~ilIaD~~a~~~~~~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~k 126 (549)
.+||+||+|||.+|||||++++. +..+ |.+++++|+|||+||++.+..++ .+++...++ +.+.|+|||+||++
T Consensus 3 ~~v~sGiqPSG~~HLGnylG~ik~wv~l-q~~~~~~~~IADlHAlt~~~~d~---~~ir~~~~~--~~a~~lA~GlDP~k 76 (398)
T PRK12283 3 DRVLSGMRPTGRLHLGHYHGVLKNWVKL-QHEYECFFFVADWHALTTHYETP---EVIEKNVWD--MVIDWLAAGVDPAQ 76 (398)
T ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHH-hcCCcEEEEeecHHHHhCCCCCH---HHHHHHHHH--HHHHHHHcCCCccc
Confidence 47999999999999999999753 2222 45889999999999999752233 445555554 34789999999999
Q ss_pred eEEEEccccccccccHH------HHHHHHcccCHHHHHHhhHHHhhhccCCCcccchhhHHhhcccccccCcEEEecccc
Q psy5948 127 LKFVKGTDYQLSKEYTL------DVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFGGVDQ 200 (549)
Q Consensus 127 ~~i~~qS~~~~~~~~~~------~~~~l~~~~t~~~~k~~~~~~~~~~~~~~~~~~~YP~LqAaDil~~~~d~~~gG~DQ 200 (549)
+.||+||++++|.++.| .+.++.++++.++ +... ....+..++|.|+||+||||||++++++++|+|.||
T Consensus 77 ~~if~QS~v~eh~eL~wil~~~t~~~~L~R~~~~Kd-k~~~---~~~~~~~~~Gll~YPvLqAADILl~~a~iVPVG~DQ 152 (398)
T PRK12283 77 ATLFIQSKVPEHAELHLLLSMITPLGWLERVPTYKD-QQEK---LKEKDLSTYGFLGYPLLQSADILIYRAGLVPVGEDQ 152 (398)
T ss_pred eEEEECCCchHHHHHHHHHHhhccHHHHHhhhHHHH-HHhh---hccccCCcchhhcCcHHHHHHHHhcCCCEeeecccc
Confidence 99999999988876544 2345555544433 2110 001245688999999999999999999999999999
Q ss_pred hhhHHHHHHhhhhcCCC--c---e--------------------------------------------------------
Q psy5948 201 RKIFTLAEKYLPQLGYA--K---R-------------------------------------------------------- 219 (549)
Q Consensus 201 ~~~~~~~r~l~~~~~~~--~---~-------------------------------------------------------- 219 (549)
+||++++|+++++||.. . .
T Consensus 153 ~qHleLaRdIA~rfN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (398)
T PRK12283 153 VPHVEMTREIARRFNHLYGREPGFEEKAEAAIKKLGKKRAKLYHELRNAYQEEGDDEALEQARALLQEQQNLSMGDRERL 232 (398)
T ss_pred HHHHHHHHHHHHHHHHhcCccccchhHHHHHhhccchhhHHHHHHHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhccc
Confidence 99999999999987642 1 0
Q ss_pred -----------eE------EecccccCCCCCCccCCCCCCeeeccCCHHHHHHHHHhccCCCC--------CCCcchhhc
Q psy5948 220 -----------IH------FMNPMVPGLAGGKMSSSEEDSKIDLLDAPALVKKKLKKAFCEPG--------NVEDNGVLS 274 (549)
Q Consensus 220 -----------~~------l~~plL~~l~G~KMSKS~~~s~I~L~Dsp~~i~kKI~~A~td~~--------~~~~~~v~~ 274 (549)
+. ..+++|+||+|+|||||.+ ++|+|+|+|++|++||++|+||+. +++.|++++
T Consensus 233 ~~~~~~~~~~~~~~P~~~~~~~~~I~gLdg~KMSKS~~-n~I~L~Ds~~~I~kKI~~a~TDs~~~~~~~~g~Pe~~nl~~ 311 (398)
T PRK12283 233 FGYLEGAGKIILPEPQALLTEASKMPGLDGQKMSKSYG-NTIGLREDPESVTKKIRTMPTDPARVRRTDPGDPEKCPVWQ 311 (398)
T ss_pred cccccccCCcccCCCcccccCCCcccCCCCCcCCCCCC-CeeeCcCCHHHHHHHHHhCCCCCcccccCCCCCCCcCHHHH
Confidence 11 1247899999999999976 599999999999999999999863 334444444
Q ss_pred hhhhheecccCCCcceeeeecccCCCCCCCCCHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCchhhhhc
Q psy5948 275 FLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPADLKAAAEFYINRLLEPIRKKFE 344 (549)
Q Consensus 275 ~~k~~lf~~~~~~~~~~i~~~~~~g~~~~~~~~eel~~~~~~g~l~~~dlK~~Lae~l~~~l~pir~~~~ 344 (549)
+++. |+ + .+++++++++|++|+++|++||+.|++.|+++|.|+|+++.
T Consensus 312 --------i~~~---~~--------~---~~~~~~i~~~~~~g~~~~g~~K~~lae~v~e~L~~irer~~ 359 (398)
T PRK12283 312 --------LHQV---YS--------D---EETKEWVQKGCRSAGIGCLECKQPVIDAILREQQPMRERAQ 359 (398)
T ss_pred --------HHHH---hC--------C---ChHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332 21 1 13689999999999999999999999999999999999987
No 18
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=100.00 E-value=1.1e-50 Score=412.20 Aligned_cols=256 Identities=24% Similarity=0.272 Sum_probs=205.3
Q ss_pred eEEEeecCCCccchhhhHH-HHHHHHHHHcCCcEEEEEeCceeeecCCCChhHHHHHHHHHHHHHHHHHHHccCCCCCee
Q psy5948 49 KIYWGTATTGRPHIAYFVP-MSKIADFLRAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKL 127 (549)
Q Consensus 49 ~v~~Gi~PTG~lHIGn~~~-~~~l~~l~~~G~~v~ilIaD~~a~~~~~~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~k~ 127 (549)
++|+||+|||.+|||||++ +..++++|++|++++++|||+||++++..++ .+.+.+..+ +.+.++|+|+||+++
T Consensus 1 ~i~tG~~PTG~lHLG~~~~al~~~~~lQ~ag~~~~~~IaD~ha~t~~~~~~---~~~~~~~~~--~~~~~lA~G~dp~k~ 75 (280)
T cd00806 1 RVLSGIQPSGSLHLGHYLGAFRFWVWLQEAGYELFFFIADLHALTVKQLDP---EELRQNTRE--NAKDYLACGLDPEKS 75 (280)
T ss_pred CEEEeeCCCchhhHHHHHHHHHHHHHHHhCCCCEEEEecchHHHhCCCCCH---HHHHHHHHH--HHHHHHHcCCCcccC
Confidence 5899999999999999999 7789999999999999999999999863233 334444443 346888999999999
Q ss_pred EEEEccccccccccHHHHHHHHcccCHHHHHHhhH--HHhhhccCCCcccchhhHHhhcccccccCcEEEecccchhhHH
Q psy5948 128 KFVKGTDYQLSKEYTLDVYRLSSVITEHDAKKAGA--EVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFGGVDQRKIFT 205 (549)
Q Consensus 128 ~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~k~~~~--~~~~~~~~~~~~~~~YP~LqAaDil~~~~d~~~gG~DQ~~~~~ 205 (549)
.||+||+++.+.++ .+.+++.++..++++... +..+..++.++|.|+||+||||||++++++++|+|.||++|++
T Consensus 76 ~i~~qS~~~~~~~l---~~~l~~~~~~~~l~r~~~fk~~~~~~~~~~~g~~~YP~lqaaDil~~~~~~vpvG~DQ~~h~~ 152 (280)
T cd00806 76 TIFFQSDVPEHYEL---AWLLSCVVTFGELERMTGFKDKSAQGESVNIGLLTYPVLQAADILLYKACLVPVGIDQDPHLE 152 (280)
T ss_pred EEEEcCCcHHHHHH---HHHHhCcCCHHHHHhccchhhhhccCCCCcchhhcchHHHHhhhhhccCCEEeeccccHHHHH
Confidence 99999999744332 334556666666654321 1222234678999999999999999999999999999999999
Q ss_pred HHHHhhhhcC------CCceeEEec--ccccCCCCC--CccCCCCCCeeeccCCHHHHHHHHHhccCCCCC---------
Q psy5948 206 LAEKYLPQLG------YAKRIHFMN--PMVPGLAGG--KMSSSEEDSKIDLLDAPALVKKKLKKAFCEPGN--------- 266 (549)
Q Consensus 206 ~~r~l~~~~~------~~~~~~l~~--plL~~l~G~--KMSKS~~~s~I~L~Dsp~~i~kKI~~A~td~~~--------- 266 (549)
++|++++++| +..|..+++ ++|+||+|+ |||||.++|+|||+|+|++|++|||+|+|||+.
T Consensus 153 l~Rdia~r~n~~~~~~~~~P~~l~~~~~~i~~l~g~~~KMSKS~~~~~I~L~d~~~~i~~KI~~a~td~~~~~~~~~~~~ 232 (280)
T cd00806 153 LTRDIARRFNKLYGEIFPKPAALLSKGAFLPGLQGPSKKMSKSDPNNAIFLTDSPKEIKKKIMKAATDGGRTEHRRDGGG 232 (280)
T ss_pred HHHHHHHHhccccccccCCCeeeccCCCccccCCCCCCcccCCCCCCeEEeeCCHHHHHHHHHhccCCCCCceecCCCCC
Confidence 9999999999 567777777 999999984 999999978999999999999999999999864
Q ss_pred CCcchhhchhhhheecccCCCcceeeeecccCCCCCCCCCHHHHH--HHHHcCCCChHHHHHHHHHHHHHh
Q psy5948 267 VEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLE--QVFAKQELHPADLKAAAEFYINRL 335 (549)
Q Consensus 267 ~~~~~v~~~~k~~lf~~~~~~~~~~i~~~~~~g~~~~~~~~eel~--~~~~~g~l~~~dlK~~Lae~l~~~ 335 (549)
++.+++.+|++ . |. ..+.++++ ++|+.|+++|++||++||+.|+++
T Consensus 233 ~~~~~l~~~~~--------~---~~------------~~~~~~~~~~~~~~~g~~~~~~~K~~lae~i~~~ 280 (280)
T cd00806 233 PGVSNLVEIYS--------A---FF------------NDDDEELEEIDEYRSGGLGYGECKKLLAEAIQEF 280 (280)
T ss_pred CCcChHHHHHH--------H---Hh------------CCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhC
Confidence 33445544443 2 21 12345555 899999999999999999999864
No 19
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5.9e-49 Score=417.40 Aligned_cols=297 Identities=20% Similarity=0.249 Sum_probs=235.2
Q ss_pred HHHccc-ccccCHHHHHHH-HhcCCceEEEeecCCCc-cchhhhHHHHHHHHHHHcCCcEEEEEeCceeeecCCCChhH-
Q psy5948 25 LITRNL-QEFLGEDRLNVI-LKERDLKIYWGTATTGR-PHIAYFVPMSKIADFLRAGCEVTILFADLHAYLDNMKAPWE- 100 (549)
Q Consensus 25 li~R~~-~ei~~~~~L~~~-l~~~~~~v~~Gi~PTG~-lHIGn~~~~~~l~~l~~~G~~v~ilIaD~~a~~~~~~~~~~- 100 (549)
|-+|++ .++..+++|++. .+++++++|+||+|||+ |||||+++++.+++||++|++++++|||+||.++||+++..
T Consensus 9 l~~Rg~~~~~~~~~~l~~~~~~~~~~~iy~G~dPT~~sLHlGhlv~l~~l~~lq~~G~~~~~ligd~ta~igDpsgk~~~ 88 (410)
T PRK13354 9 LKWRGAINQETDEEKLRKSLKEGKPLTLYLGFDPTAPSLHIGHLVPLMKLKRFQDAGHRPVILIGGFTGKIGDPSGKSKE 88 (410)
T ss_pred HHHcCCchhcCCHHHHHHHHhcCCCcEEEEcccCCCCCcchhhHHHHHHHHHHHHcCCeEEEEEcccccccCCCCccccc
Confidence 335885 455567788884 45689999999999996 99999999999999999999999999999999999875322
Q ss_pred -----HHHHHHHHHHHHHHHHHHccCCCCCeeEEEEccccccccccHHHHH-HHHcccCHHHHHHh--hHHHhhhccCCC
Q psy5948 101 -----LLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLSKEYTLDVY-RLSSVITEHDAKKA--GAEVVKQVEHPL 172 (549)
Q Consensus 101 -----~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS~~~~~~~~~~~~~-~l~~~~t~~~~k~~--~~~~~~~~~~~~ 172 (549)
..+.+.+.. . +.+.+.+ |+||+++.|++||+|..+..| .+++ .++++++.+++... ...+.....+.+
T Consensus 89 R~~l~~e~i~~n~~-~-i~~q~~~-~ld~~k~~i~~ns~w~~~~~~-~~~l~~v~~~~tv~~m~~~~~~~~R~~~~~~is 164 (410)
T PRK13354 89 RKLLTDEQVQHNAK-T-YTEQIFK-LFDFEKTEIVNNSDWLSKLNL-IDFLRDYGKHFTVNRMLERDDVKSRLEREQGIS 164 (410)
T ss_pred ccCCCHHHHHHHHH-H-HHHHHHH-hcCccceEEEECccccccccH-HHHHHHHHhhccHHHHHhchHHHhhhccCCCCc
Confidence 112222221 1 2233333 889999999999999655444 5566 58888888876542 111122234678
Q ss_pred cccchhhHHhhcccccc----cCcEEEecccchhhHHHHHHhhhhcCCCceeEEecccccCCCCCCccCCCCCCeeeccC
Q psy5948 173 LSGLLYPGLQALDEEYL----KVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGGKMSSSEEDSKIDLLD 248 (549)
Q Consensus 173 ~~~~~YP~LqAaDil~~----~~d~~~gG~DQ~~~~~~~r~l~~~~~~~~~~~l~~plL~~l~G~KMSKS~~~s~I~L~D 248 (549)
+++|+||+|||+|++++ +|++|+||.|||+|++++|+++++++..+++++++|+|++++|.|||||.+ ++|||+|
T Consensus 165 ~~ef~YpllQa~D~~~l~~~~~~~iq~gG~DQ~~ni~~grdl~~r~~~~~~~~lt~PlL~g~dG~KMsKS~~-naI~L~d 243 (410)
T PRK13354 165 FTEFFYPLLQAYDFVHLNRKEDVDLQIGGTDQWGNILMGRDLQRKLEGEEQFGLTMPLLEGADGTKMGKSAG-GAIWLDP 243 (410)
T ss_pred hhhhccHHHHhhhHHHHhccCCCCEEEecHHHHHHHHHHHHHHHHhCCCCceEeccCCccCCCCCccCCCCC-CceeccC
Confidence 89999999999999999 999999999999999999999999999999999999999999999999987 5999999
Q ss_pred C---HHHHHHHHHhccCCCCCCCcchhhchhhhheecccCCCcceeeeecccCCCCCCCCCHHHHHHHHHcCCCChHHHH
Q psy5948 249 A---PALVKKKLKKAFCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPADLK 325 (549)
Q Consensus 249 s---p~~i~kKI~~A~td~~~~~~~~v~~~~k~~lf~~~~~~~~~~i~~~~~~g~~~~~~~~eel~~~~~~g~l~~~dlK 325 (549)
+ |+++++||+++ .++++.+|+++ |+.+. .+++++++++|..|. +++++|
T Consensus 244 ~~tsp~~i~qki~~~-------~D~~v~~~l~~--~t~l~------------------~~ei~~l~~~~~~~~-~~~~~K 295 (410)
T PRK13354 244 EKTSPYEFYQFWMNI-------DDRDVVKYLKL--FTDLS------------------PDEIDELEAQLETEP-NPRDAK 295 (410)
T ss_pred CCCCHHHHHHHHHcC-------ChHHHHHHHHH--HhCCC------------------HHHHHHHHHHHhcCC-ChHHHH
Confidence 9 99999999984 67888888874 33222 368999999999864 599999
Q ss_pred HHHHHHHHHhcCchhhhhcchHHHHHhhhcCC
Q psy5948 326 AAAEFYINRLLEPIRKKFESKELKDLTSKAYP 357 (549)
Q Consensus 326 ~~Lae~l~~~l~pir~~~~~~e~~~~~~~~~~ 357 (549)
+.||++|+++++..++..+ +++..+..|.
T Consensus 296 k~LA~~v~~~vhg~~~~~~---a~~~~~~~f~ 324 (410)
T PRK13354 296 KVLAEEITKFVHGEEAAEE---AEKIFKALFS 324 (410)
T ss_pred HHHHHHHHHHHCCHHHHHH---HHHHHHHHhC
Confidence 9999999999999766544 3333444453
No 20
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-49 Score=416.83 Aligned_cols=323 Identities=23% Similarity=0.291 Sum_probs=273.7
Q ss_pred CCHHHHHHHHHcc-cccccCHHHHHHHHhcCCceEEEeecCCCc-cchhhhHHHHHHHHHHHcCCcEEEEEeCceeeecC
Q psy5948 17 LSFDEKKQLITRN-LQEFLGEDRLNVILKERDLKIYWGTATTGR-PHIAYFVPMSKIADFLRAGCEVTILFADLHAYLDN 94 (549)
Q Consensus 17 ~~~~~~~~li~R~-~~ei~~~~~L~~~l~~~~~~v~~Gi~PTG~-lHIGn~~~~~~l~~l~~~G~~v~ilIaD~~a~~~~ 94 (549)
+++ ++.+|+.|| ++++.++++|+++++..++++|+||+|||+ +||||+++++++++||++||+++++|||+||++||
T Consensus 2 ~~~-~~~~L~~Rg~~~~i~~ee~l~~ll~~~~~~~Y~GfDPTa~slHlGhlv~l~kL~~fQ~aGh~~ivLigd~ta~IgD 80 (401)
T COG0162 2 MDV-ELLELIKRGLIEQITDEEELRKLLEEGPLRVYIGFDPTAPSLHLGHLVPLMKLRRFQDAGHKPIVLIGDATAMIGD 80 (401)
T ss_pred CcH-HHHHHHHcCchhccCcHHHHHHHHhcCCceEEEeeCCCCCccchhhHHHHHHHHHHHHCCCeEEEEecccceecCC
Confidence 456 899999999 788899999999999889999999999995 99999999999999999999999999999999999
Q ss_pred CCChhHHHHHH-HHHHHHHHHHHHHccCCCCC-eeEEEEccccccccccHHHHHHHHcccCHHHHHHhhHHHhhhcc--C
Q psy5948 95 MKAPWELLALR-TKYYEESIKAMLESIDVPIS-KLKFVKGTDYQLSKEYTLDVYRLSSVITEHDAKKAGAEVVKQVE--H 170 (549)
Q Consensus 95 ~~~~~~~~~~~-~~~~~~~i~~~l~a~Gldp~-k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~k~~~~~~~~~~~--~ 170 (549)
|+++.+.++.. .+++....+.+..++|..++ ++.+++||+|.....|+..+.++++++|++++..+.....|... +
T Consensus 81 psGk~e~r~~l~~e~v~~n~~~i~~ql~~~ld~k~~~v~ns~w~~~~~y~~~l~~~g~~~sv~rml~~d~~~~R~~~~~~ 160 (401)
T COG0162 81 PSGKSEERKLLTRETVLENAETIKKQLGKFLDNKAEFVNNSDWLKKLNYLDFLRDVGKHFSVNRMLRRDDVKKRLEREQG 160 (401)
T ss_pred CCCCHHHHhhccHHHHHHHHHHHHHHhcccCCcceEEEechHHhCcCCHHHHHHHHHhHccHHHHHHhhhHHHHhccCCC
Confidence 98887755544 34555556778888998888 99999999997667777767778899999998776544443333 5
Q ss_pred CCcccchhhHHhhcccccccCcEEEecccchhhHHHHHHhhhhcCCCceeEEecccccCCCCCCccCCCCCCeeeccC--
Q psy5948 171 PLLSGLLYPGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGGKMSSSEEDSKIDLLD-- 248 (549)
Q Consensus 171 ~~~~~~~YP~LqAaDil~~~~d~~~gG~DQ~~~~~~~r~l~~~~~~~~~~~l~~plL~~l~G~KMSKS~~~s~I~L~D-- 248 (549)
+++++|+||+|||+|++++++|+++||.|||+|+.+||+++++++..+++++|+|+|++++|+|||||.++ ++|+..
T Consensus 161 is~~Ef~YpLmQayD~~~L~~dlq~GG~DQ~~ni~~grdl~rr~g~~~~~~lt~PLL~~ldG~KmgKs~~~-a~~~~s~~ 239 (401)
T COG0162 161 ISFTEFNYPLLQAYDFVYLNKDLQLGGSDQWGNILAGRDLIRRLGQKKVVGLTTPLLTGLDGKKMGKSEGG-AVWLDSEK 239 (401)
T ss_pred CchhhhhhHHHHHHHHHHHccchhcCChHHHHHHHHHHHHHHHhCCCCeEEEEeccccCCCCCcccccCCC-ceEccCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999885 566653
Q ss_pred --------CHHHHHHHHHhccCCCC-CCCcchhhchhhhheecccCCCccee------eeecccCCCCCCCCCHHHHHHH
Q psy5948 249 --------APALVKKKLKKAFCEPG-NVEDNGVLSFLKHVVFSLLKPGENLV------ITRDENNGGNLNFSDYQSLEQV 313 (549)
Q Consensus 249 --------sp~~i~kKI~~A~td~~-~~~~~~v~~~~k~~lf~~~~~~~~~~------i~~~~~~g~~~~~~~~eel~~~ 313 (549)
.+..+..+++.+||... ....+++.++.++++++- ... .. ..++..+|++..+..+++.+..
T Consensus 240 ~Sp~~~yq~~~~i~D~~~~~~~~~~t~l~~~eI~~i~~~~~~~~-~~r--~~k~~LA~e~~~~~hG~~~a~~a~~~~~~~ 316 (401)
T COG0162 240 TSPYDFYQYWMNIEDADVKRFLKLLTFLSLEEIEEIEKYVLKGP-EPR--EAKKLLAKEVTKLVHGEEAAEAAEEEFEKL 316 (401)
T ss_pred CCcHhhhhcHhcCcHHHHHHHHHHhCcCChHHHHHHHHHhhcCC-ChH--HHHHHHHHHhhHhhcCHHHHHHHHHHHHHH
Confidence 34566777888999987 564489999998877764 210 11 1255678888888899999999
Q ss_pred HHcC---CCChHHHHH-----HHHHHHHHhcCchhhhhc
Q psy5948 314 FAKQ---ELHPADLKA-----AAEFYINRLLEPIRKKFE 344 (549)
Q Consensus 314 ~~~g---~l~~~dlK~-----~Lae~l~~~l~pir~~~~ 344 (549)
|.+| .+++.|||. .++..++..|.|.|....
T Consensus 317 F~~g~~~~l~~~dlk~~~~~~~~~~lv~~~L~psr~ear 355 (401)
T COG0162 317 FSEGLPENLPPADLKQKLEDGLVDLLVDAGLAPSRSEAR 355 (401)
T ss_pred HhcCCcccCCHHHHhhhhHHHHHHHHHHhCCcccHHHHH
Confidence 9999 999999999 889999999999987655
No 21
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=8.7e-49 Score=396.72 Aligned_cols=256 Identities=19% Similarity=0.182 Sum_probs=203.4
Q ss_pred eEEEeecCCC-ccchhhhHHHHHHHHHHHcCCcEEEEEeCceeeecCCCChh------HHHHHHHHHHHHHHHHHHHccC
Q psy5948 49 KIYWGTATTG-RPHIAYFVPMSKIADFLRAGCEVTILFADLHAYLDNMKAPW------ELLALRTKYYEESIKAMLESID 121 (549)
Q Consensus 49 ~v~~Gi~PTG-~lHIGn~~~~~~l~~l~~~G~~v~ilIaD~~a~~~~~~~~~------~~~~~~~~~~~~~i~~~l~a~G 121 (549)
.+|+||+||| .+|||||+++..+++||++|++++++|||+||+++++++.. +..+.+.+... +.+.++|+|
T Consensus 1 ~iy~G~~PTg~~lHlGh~~~l~~~~~lq~~g~~~~~~I~d~~a~~~d~sg~~~~r~~~~~~~i~~n~~~--~~~~~~a~g 78 (273)
T cd00395 1 TLYCGIDPTADSLHIGHLIGLLTFRRFQHAGHRPIFLIGGQTGIIGDPSGKKSERTLNDPEEVRQNIRR--IAAQYLAVG 78 (273)
T ss_pred CeEEeEcCCCCCccHHHHHHHHHHHHHHHCCCCEEEEEecCceeeCCCCCccccccCCCHHHHHHHHHH--HHHHHHHhc
Confidence 4899999999 59999999988999999999999999999999999875421 23344444333 346788999
Q ss_pred CC--CCeeEEEEccccccccccHHHHHHHHcccCHHHHHHhhHHHhhhccCCCcccchhhHHhhcccccccC----cEEE
Q psy5948 122 VP--ISKLKFVKGTDYQLSKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKV----DAQF 195 (549)
Q Consensus 122 ld--p~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~k~~~~~~~~~~~~~~~~~~~YP~LqAaDil~~~~----d~~~ 195 (549)
+| |+++.||+||+|+...+++.-+..++++++..++.+......+...+.++++|+||+|||||+++++. ++||
T Consensus 79 ~d~~p~k~~i~~ns~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~k~r~~~~~~~~~~~Yp~lQaaD~l~l~~~~~~~~vp 158 (273)
T cd00395 79 IFEDPTQATLFNNSDWPGPLAHIQFLRDLGKHVYVNYMERKTSFQSRSEEGISATEFTYPPLQAADFLLLNTTEGCDIQP 158 (273)
T ss_pred CcCCCcceEEEEccccCCcccHHHHHHHHHccCcHHHHHhChHHHHHhcCCCCchhhhhHHHHHHHHHHHhcccCCcEEE
Confidence 99 99999999999963333332233466777777776543322222346799999999999999999877 9999
Q ss_pred ecccchhhHHHHHHhhhhcC-CCceeEEecccccCCCCCCccCCCCCCeee---ccCCHHHHHHHHHhccCCCCCCCcch
Q psy5948 196 GGVDQRKIFTLAEKYLPQLG-YAKRIHFMNPMVPGLAGGKMSSSEEDSKID---LLDAPALVKKKLKKAFCEPGNVEDNG 271 (549)
Q Consensus 196 gG~DQ~~~~~~~r~l~~~~~-~~~~~~l~~plL~~l~G~KMSKS~~~s~I~---L~Dsp~~i~kKI~~A~td~~~~~~~~ 271 (549)
||.|||+|++++|+++++++ ..+|.++++|+|++++|+|||||.++ +|| +.|+|+++++||++|+ +++
T Consensus 159 ~G~DQ~~~i~l~rdla~r~n~~~~p~~l~~p~l~~l~G~KMSKS~~~-~i~l~~~~dsp~~i~~ki~~a~-------d~~ 230 (273)
T cd00395 159 GGSDQWGNITLGRELARRFNGFTIAEGLTIPLVTKLDGPKFGKSESG-PKWLDTEKTSPYEFYQFWINAV-------DSD 230 (273)
T ss_pred ecHHHHHHHHHHHHHHHHhCCCCCCeEEeeccccCCCCCcCCCCCCC-CccccccCCCHHHHHHHHHccc-------HhH
Confidence 99999999999999999997 56888999999999999999999986 666 4899999999999985 677
Q ss_pred hhchhhhheecccCCCcceeeeecccCCCCCCCCCHHHHHHHHHcCCCChHHHHHHHHHHHHHh
Q psy5948 272 VLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPADLKAAAEFYINRL 335 (549)
Q Consensus 272 v~~~~k~~lf~~~~~~~~~~i~~~~~~g~~~~~~~~eel~~~~~~g~l~~~dlK~~Lae~l~~~ 335 (549)
+.+|++++.+ .. .+++++|++++..| .+++++|+.||+.|+++
T Consensus 231 v~~~~~~~t~--~~------------------~~ei~~i~~~~~~~-~~~~~~K~~La~~i~~~ 273 (273)
T cd00395 231 VINILKYFTF--LS------------------KEEIERLEQEQYEA-PGYRVAQKTLAEEVTKT 273 (273)
T ss_pred HHHHHHHHcC--CC------------------HHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhC
Confidence 8887774221 11 24677776676654 47899999999999864
No 22
>KOG2713|consensus
Probab=100.00 E-value=6.4e-49 Score=381.99 Aligned_cols=266 Identities=24% Similarity=0.280 Sum_probs=215.1
Q ss_pred CceEEEeecCCCccchhhhHHHH-HHHHHHH---cCCcEEEEEeCceeeecCCCChhHHHHHHHHHHHHHHHHHHHccCC
Q psy5948 47 DLKIYWGTATTGRPHIAYFVPMS-KIADFLR---AGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDV 122 (549)
Q Consensus 47 ~~~v~~Gi~PTG~lHIGn~~~~~-~l~~l~~---~G~~v~ilIaD~~a~~~~~~~~~~~~~~~~~~~~~~i~~~l~a~Gl 122 (549)
+.++++||||||.+|||||++.+ .+..||. .|-.++++|+|.||++. |.+| ...|....++ .+.++|||+
T Consensus 13 ~~rvfSGIQPTG~~HLGNYLGai~~Wv~LQ~~~d~~~~~~f~vvDlHaITv-p~dp---~~lrq~~~dm--~A~lLAcGI 86 (347)
T KOG2713|consen 13 PKRVFSGIQPTGIPHLGNYLGAIKPWVQLQNEYDKNILVLFSVVDLHAITV-PQDP---AELRQATHDM--AASLLACGI 86 (347)
T ss_pred cceeEeccCCCCCchhhhhhhhhhHHHHHHHHhcCCceEEEEEeeceeecC-CCCh---HHHHHHHHHH--HHHHHHhcc
Confidence 67999999999999999999865 3666664 35678999999999997 4555 3577776663 578999999
Q ss_pred CCCeeEEEEccccccccccHH------HHHHHHcccCHHHHHHhhHHHhhhccCCCcccchhhHHhhcccccccCcEEEe
Q psy5948 123 PISKLKFVKGTDYQLSKEYTL------DVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFG 196 (549)
Q Consensus 123 dp~k~~i~~qS~~~~~~~~~~------~~~~l~~~~t~~~~k~~~~~~~~~~~~~~~~~~~YP~LqAaDil~~~~d~~~g 196 (549)
||+|..+|+||+++.|.++.| .+.||++| ++++.|..- ...+..++|.|+||+||||||++|+++++|+
T Consensus 87 dp~Ks~lF~QS~Vpqh~el~WlLsslt~mg~L~rm-~Q~KeKs~~----~~~~~~~vGLftYPvLqAADILLYksThVPV 161 (347)
T KOG2713|consen 87 DPEKSSLFVQSDVPQHAELSWLLSSLTTMGRLARM-PQWKEKSER----FKVGDVPVGLFTYPVLQAADILLYKSTHVPV 161 (347)
T ss_pred CcccceeeeeccchHHHHHHHHHHhccchHHHHhh-HHHHhhhhh----hccCccceeeecchhHhhhhHhhhccccccC
Confidence 999999999999999998755 35567766 566555421 1234568999999999999999999999999
Q ss_pred cccchhhHHHHHHhhhhcCC--C-ceeEEe-------cccccCCC-C-CCccCCCCC--CeeeccCCHHHHHHHHHhccC
Q psy5948 197 GVDQRKIFTLAEKYLPQLGY--A-KRIHFM-------NPMVPGLA-G-GKMSSSEED--SKIDLLDAPALVKKKLKKAFC 262 (549)
Q Consensus 197 G~DQ~~~~~~~r~l~~~~~~--~-~~~~l~-------~plL~~l~-G-~KMSKS~~~--s~I~L~Dsp~~i~kKI~~A~t 262 (549)
|+||.||++++|.+++++|. . ..+.++ +..+++|. + +|||||+++ ++|+|.|+|+.|.+||++|.|
T Consensus 162 GeDQsQHleL~r~lA~~fN~~Y~~~~fpvP~~il~~~~~rV~SL~dpekKMSKSd~n~~s~I~l~DS~~~I~~Ki~ka~T 241 (347)
T KOG2713|consen 162 GEDQSQHLELARHLAQAFNKTYGTEIFPVPEQILRQSHARVMSLRDPEKKMSKSDPNPKSRINLTDSPDLIVKKIKKAQT 241 (347)
T ss_pred CccHHHHHHHHHHHHHHHhhhccCeeecCcHHHHhhhhhhhhhccChhhhcccCCCCCcceEEecCCHHHHHHHHHHHhc
Confidence 99999999999999999984 2 223232 34567774 5 799999975 899999999999999999999
Q ss_pred CC------CCCCcchhhchhhhheecccCCCcceeeeecccCCCCCCCCCHHHHHHHHHcCCCChHHHHHHHHHHHHHhc
Q psy5948 263 EP------GNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPADLKAAAEFYINRLL 336 (549)
Q Consensus 263 d~------~~~~~~~v~~~~k~~lf~~~~~~~~~~i~~~~~~g~~~~~~~~eel~~~~~~g~l~~~dlK~~Lae~l~~~l 336 (549)
|. ++.++++|.|+ +.+|++ + +..+++++.+.+. .+.+.++|..||++|++.|
T Consensus 242 D~~~~vtYd~~~RpgvsNL-----lni~aa---V------------t~~s~eeV~~~~a--~~~~~~fK~~vaeAvie~L 299 (347)
T KOG2713|consen 242 DNTSGVTYDPANRPGVSNL-----LNIYAA---V------------TGKSIEEVVEESA--NMSTADFKDNVAEAVIEHL 299 (347)
T ss_pred ccccceeeCCccccchhHH-----HHHHHH---H------------cCCCHHHHHHHhc--cCCHHHHHHHHHHHHHHHh
Confidence 86 33567788875 455554 2 2368999998776 5899999999999999999
Q ss_pred Cchhhhhcc
Q psy5948 337 EPIRKKFES 345 (549)
Q Consensus 337 ~pir~~~~~ 345 (549)
.|||++|++
T Consensus 300 ~PIr~~fee 308 (347)
T KOG2713|consen 300 APIRTEFEE 308 (347)
T ss_pred ccHHHHHHH
Confidence 999999984
No 23
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=100.00 E-value=1.2e-48 Score=411.62 Aligned_cols=317 Identities=27% Similarity=0.309 Sum_probs=256.5
Q ss_pred HHHHcccccccC-HHHHHHHHhcCCceEEEeecCCC-ccchhhhHHHHHHHHHHHcCCcEEEEEeCceeeecCCCChhHH
Q psy5948 24 QLITRNLQEFLG-EDRLNVILKERDLKIYWGTATTG-RPHIAYFVPMSKIADFLRAGCEVTILFADLHAYLDNMKAPWEL 101 (549)
Q Consensus 24 ~li~R~~~ei~~-~~~L~~~l~~~~~~v~~Gi~PTG-~lHIGn~~~~~~l~~l~~~G~~v~ilIaD~~a~~~~~~~~~~~ 101 (549)
.+.+|++.++++ ++++++++++ ++++|+||+||| .+||||+++++.+++||++|++++++|||+||+++||+++.+.
T Consensus 7 ~l~~rg~~~~~t~~~~l~~ll~~-~~~vy~G~dPTg~~lHlGh~v~l~~l~~lq~~G~~~~iligd~ta~igdpsg~~~~ 85 (377)
T TIGR00234 7 LLKKRGLEVQVPEEEELLKLLER-KIKLYVGFDPTAPSLHLGHLVPLLKLRDFQQAGHEVIVLLGDATALIGDPSGKSEE 85 (377)
T ss_pred HHHHCCCEEEcCCHHHHHHHhcC-CCEEEEeeCCCCCCccHHHHHHHHHHHHHHHCCCcEEEEEeccchhhcCCCChHHH
Confidence 566888877777 5678888877 899999999999 5999999999999999999999999999999999998876543
Q ss_pred HHHHH-----HHHHHHHHHHHHccCCCCCeeEEEEccccccccccHHHHHHHHcccCHHHHHHhhHHHhhhccCCCcccc
Q psy5948 102 LALRT-----KYYEESIKAMLESIDVPISKLKFVKGTDYQLSKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGL 176 (549)
Q Consensus 102 ~~~~~-----~~~~~~i~~~l~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~k~~~~~~~~~~~~~~~~~~ 176 (549)
+.... .+.. .+ ..++++|+||+++.|++||+|.....|+.-+..++++++..++.+......+..+++++++|
T Consensus 86 R~~~~~~~i~~n~~-~i-~~~la~gld~~k~~iv~ns~w~~~~~~~~~l~~~~~~~tv~~m~~~~~~~~R~~~~is~~ef 163 (377)
T TIGR00234 86 RKLLTREEVQENAE-NI-KKQIARFLDFEKAKFVNNSEWLLKLNYIDFIRDLGKIFSVNRMLRRDAFSSRLERGISLSEF 163 (377)
T ss_pred hhcCCHHHHHHHHH-HH-HHHHHHhCChhheEEEECchhcCcCCHHHHHHHHhCceEHHHHHcccHHHHHHhcCCCchhh
Confidence 32211 1122 22 35679999999999999999965555555455588888888876654332223346899999
Q ss_pred hhhHHhhcccccccCcEEEecccchhhHHHHHHhhhhcCCCceeEEecccccCCCCCCccCCCCCCeeeccCC-------
Q psy5948 177 LYPGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGGKMSSSEEDSKIDLLDA------- 249 (549)
Q Consensus 177 ~YP~LqAaDil~~~~d~~~gG~DQ~~~~~~~r~l~~~~~~~~~~~l~~plL~~l~G~KMSKS~~~s~I~L~Ds------- 249 (549)
+||+|||+|++++++|+|+||.|||+|++.+++++++++..+++++++|++++++|.|||||.++ +||++++
T Consensus 164 ~YpllQa~D~~~l~~di~~gG~DQ~~ni~~g~dLar~~~~~~~~~~t~pLl~~~dg~KmgKS~~~-~i~l~~~~~~~~i~ 242 (377)
T TIGR00234 164 IYPLLQAYDFVYLNVDLQIGGSDQWGNIRKGRDLIRRNLPSLGFGLTVPLLTPADGEKMGKSGGG-AVSLDEGKYDFYQF 242 (377)
T ss_pred hhHHHHHHHHHHHcCCeeEecchhHHHHHHHHHHHHHhcCCCceeeceeeecCCCCCCccCCCCC-cccCCccHhhhhhh
Confidence 99999999999999999999999999999999999999988899999999999999999999753 5555554
Q ss_pred ----HHHHHHHHHhccCCCCC----------------CCcchhhchhhhheecccCC---------------Ccceeeee
Q psy5948 250 ----PALVKKKLKKAFCEPGN----------------VEDNGVLSFLKHVVFSLLKP---------------GENLVITR 294 (549)
Q Consensus 250 ----p~~i~kKI~~A~td~~~----------------~~~~~v~~~~k~~lf~~~~~---------------~~~~~i~~ 294 (549)
|+++.+||++++|+++. .+.+++.++.+++.++.... .+.+.+.+
T Consensus 243 ~~d~~D~~~~Ki~k~~t~~~~~ei~~l~~~~~~~~~~~q~~la~ei~~~vhg~~~~~~a~~~~~~~f~~~~~~~~~~~~~ 322 (377)
T TIGR00234 243 WINTPDEDVKKILKLFTFLGLEEIEALVELKGPSPREVKENLAKEITKYVHGEEAALAAEEISEAIFSGGLNPDELPIFR 322 (377)
T ss_pred hcCCcHHHHHHHHHHcCCCcHHHHHHHHHhcccCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCCCCccCCCEEe
Confidence 99999999999999876 66789999999877654321 11255555
Q ss_pred cccCCCCCCCCCHHHHHHHHHcCCCChHHHHHH---HHHHHHHhcCchhhhhc
Q psy5948 295 DENNGGNLNFSDYQSLEQVFAKQELHPADLKAA---AEFYINRLLEPIRKKFE 344 (549)
Q Consensus 295 ~~~~g~~~~~~~~eel~~~~~~g~l~~~dlK~~---Lae~l~~~l~pir~~~~ 344 (549)
.+++|++.++.++.+....|.+++.++.++|.. +...+++.+.|+|+.+.
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~S~~~arr~ik~g~v~vn~~~i~~~~~v~~~~~ 375 (377)
T TIGR00234 323 PEKFGGDITLADLLVLSGLFPSKSEARRDIKQGGVYINGEKVTDLEPIRKEAD 375 (377)
T ss_pred ecccCCCcCHHHHHHHcCCCcChHHHHHHHHhCCEEECCEeccCchhhhcccc
Confidence 566667666777777777888888999999999 99999999999998775
No 24
>KOG2241|consensus
Probab=100.00 E-value=4.1e-45 Score=354.52 Aligned_cols=152 Identities=59% Similarity=0.935 Sum_probs=146.7
Q ss_pred CcCCCccccceeeeEEEEEecCCCCCceEEEEEEcCCCCCEEEEeCCccccccccCCCCEEEEEEeeccceecceeccee
Q psy5948 365 SDIIAPHRLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCNLKPAKMRGIESAGM 444 (549)
Q Consensus 365 ~~~~~~~~~~i~vG~I~~v~~hp~adkL~v~~vd~G~~~~~~Ivsg~~~~~~~~~l~g~~v~v~~nlk~~k~~G~~SeGM 444 (549)
..+.+++++|||||+|+++++||+||+||+++||+|+.++||||||++.|++.|+|+|++|+|+|||||+||||++|+||
T Consensus 89 ~~~p~~~~LDiRvG~Ivka~kHpdADsLYve~IdvgE~~PRTVvSGLvk~vpleemq~R~VvvlcNLKPakmRgv~S~gM 168 (255)
T KOG2241|consen 89 EAGPDVSLLDIRVGKIVKAGKHPDADSLYVEEIDVGEAEPRTVVSGLVKHVPLEEMQNRLVVVLCNLKPAKMRGVKSQGM 168 (255)
T ss_pred cCCCCcceeeEEEeEEEEecccCCcceeEEEEeeecccccceeehhhHhhCCHHHHhCCeEEEEecccccccccccccee
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccccccCCCeeEEEeCCCCCCCCceEEecCCCCCCCCcCCCCChhhHhhhccceeeCCCeeEEecCceeEEe
Q psy5948 445 VLCASVEEEGNKKVEPLFVPPSSKAGDKIVVEGYETGAPDEILNPKKKVWEKLQVDLKTSSEGIAQWQGFNIYWV 519 (549)
Q Consensus 445 llc~~~~~~~~~~~~~l~~p~~~~~G~~i~~~~~~~~~~~~~l~~kk~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 519 (549)
+||++++++ ..||++.||.++.+|+||+|+||+ ++|+.+|+||||+||.+||||+|+++|+|+|||.+|+|-
T Consensus 169 vlcaSs~d~--~~VE~l~pP~gs~pGdRv~fegfe-gePd~~LnPKKKiwE~iqpdl~t~~~~va~yKg~~~~~~ 240 (255)
T KOG2241|consen 169 VLCASSPDK--SVVEPLAPPAGSKPGDRVTFEGFE-GEPDKELNPKKKIWEKIQPDLKTNEEGVATYKGAPFETK 240 (255)
T ss_pred EEecCCccc--ceeeeccCCCCCCCCCeeeecCCC-CCcchhcChhhhhHHHhCCCcccccceEEEecCCceecc
Confidence 999998774 679999999999999999999999 699999999999999999999999999999999999774
No 25
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2e-43 Score=390.92 Aligned_cols=266 Identities=22% Similarity=0.256 Sum_probs=230.0
Q ss_pred HHHHHH--cCCcEEEEEeCceeeecC-CCChhHHHHHHHHHHHHHHHHHHHccCCCCCeeEEEEccccccc-c-ccHHHH
Q psy5948 71 IADFLR--AGCEVTILFADLHAYLDN-MKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLS-K-EYTLDV 145 (549)
Q Consensus 71 l~~l~~--~G~~v~ilIaD~~a~~~~-~~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS~~~~~-~-~~~~~~ 145 (549)
++.|++ .|++++|++|||||++++ ..+.++..+...+|+. +.|.|+|+|++ ++|+|+|++..+ . +||..+
T Consensus 398 ~~~~~~~~~g~~~~illADwhA~lN~k~~G~l~~I~~~~~y~~----~~~~a~G~~~~-v~fv~~sd~~~~~~~~Yw~~v 472 (682)
T PTZ00348 398 TKDFIAAHSDGTVTLVLPDWSAVASDEITGEEKDISAALEVNC----ALLKAYGLPSE-VKIVRENEVILGNPNDFWVSV 472 (682)
T ss_pred HHHHHHHcCCCeEEEEeehhHHHhcCccCCCHHHHHHHHHHHH----HHHHHcCCCCC-cEEEEchHhhhcCchhHHHHH
Confidence 456654 599999999999999986 2377776666666654 46789999999 999999999765 3 999999
Q ss_pred HHHHcccCHHHHHHhhHHHhhhccCCCcccchhhHHhhcccccccCcEEEecccchhhHHHHHHhhhhcCCCceeEEecc
Q psy5948 146 YRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNP 225 (549)
Q Consensus 146 ~~l~~~~t~~~~k~~~~~~~~~~~~~~~~~~~YP~LqAaDil~~~~d~~~gG~DQ~~~~~~~r~l~~~~~~~~~~~l~~p 225 (549)
+++++.+|..++++.. ..+..+++.++||+||++|++++++|+++||.|||..+++||+++++.. +++.+.++
T Consensus 473 ~~ia~~~tl~r~~r~~-----g~~~~~~s~~iYP~MQ~~Di~~L~~di~~gG~DQRki~mlAre~~~~~~--~~~~~~~~ 545 (682)
T PTZ00348 473 IGIARKNLLSHVEELY-----GGELRNAGQVIAALMRVATALMLSASHVISTSLDGGINEFAREYTKGRI--ECIQALEG 545 (682)
T ss_pred HHHHHhccHHHHHHHh-----cCCcccHHHHHHHHHHHHHHHhcCCCeeecChhHHHHHHHHHHhccccc--cchhhcCC
Confidence 9999999999988753 1344589999999999999999999999999999999999999998532 33445677
Q ss_pred cccCCC-C-CCccCCCCCCeeeccCCHHHHHHHHHhccCCCCCCCcchhhchhhhheecccCCCcceeeeecccCCCCCC
Q psy5948 226 MVPGLA-G-GKMSSSEEDSKIDLLDAPALVKKKLKKAFCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLN 303 (549)
Q Consensus 226 lL~~l~-G-~KMSKS~~~s~I~L~Dsp~~i~kKI~~A~td~~~~~~~~v~~~~k~~lf~~~~~~~~~~i~~~~~~g~~~~ 303 (549)
++|+|. | .+|++|++++.|+++|++++|++||++|||+| +++.|||++|++|+ |+.+.. |.|+|+++|||+++
T Consensus 546 ~~p~l~~~~~~~~~~s~~s~i~~~D~~~~i~~Ki~kA~Cpp-~~~~Npvl~~~~y~-~~~~~~---~~i~R~e~~Gg~~~ 620 (682)
T PTZ00348 546 RVPALHRPGAAPAVLGADDVLYLDDNDMDIRRKIKKAYSAP-NEEANPVISVAQHL-LAQQGA---LSIERGEANGGNVA 620 (682)
T ss_pred CCccccccccccCCCCCCCeeeecCCHHHHHHHHHhCCCCC-CCCCCcHHHHHHHH-hcCCCe---EEEecccccCCCee
Confidence 788886 3 57888877899999999999999999999999 56889999999997 787765 99999999999999
Q ss_pred CCCHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCchhhhhcchHHHHHhhh
Q psy5948 304 FSDYQSLEQVFAKQELHPADLKAAAEFYINRLLEPIRKKFESKELKDLTSK 354 (549)
Q Consensus 304 ~~~~eel~~~~~~g~l~~~dlK~~Lae~l~~~l~pir~~~~~~e~~~~~~~ 354 (549)
|.++++|+++|.+|.+||.|||.+++++|+++++|+|+++. .|.+++++.
T Consensus 621 y~s~eeL~~dy~~g~lhP~DLK~av~~~l~~~l~pvr~~~~-~~~~~~l~~ 670 (682)
T PTZ00348 621 YNTPEALVADCGSGALHPADLKAAVSQLLLDRSAAARALLS-GELKKNMQT 670 (682)
T ss_pred eCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHH
Confidence 99999999999999999999999999999999999999998 666655543
No 26
>KOG2623|consensus
Probab=100.00 E-value=3.1e-36 Score=304.57 Aligned_cols=303 Identities=17% Similarity=0.209 Sum_probs=228.3
Q ss_pred HHHHHHHHcccc-cccCHH--HHHHHHhc-C-CceEEEeecCCCc-cchhhhHHHHHHHHHHHcCCcEEEEEeCceeeec
Q psy5948 20 DEKKQLITRNLQ-EFLGED--RLNVILKE-R-DLKIYWGTATTGR-PHIAYFVPMSKIADFLRAGCEVTILFADLHAYLD 93 (549)
Q Consensus 20 ~~~~~li~R~~~-ei~~~~--~L~~~l~~-~-~~~v~~Gi~PTG~-lHIGn~~~~~~l~~l~~~G~~v~ilIaD~~a~~~ 93 (549)
+-..++-.|++. ..+++. -....|.+ . |.+||+|||||+. +|+||+++++.+.++|++||+++.+||++||.+|
T Consensus 31 ~~L~~l~aR~l~~~s~Pet~~~~~~~L~~rglp~~vYcGfDPTA~SLHvGNLl~lm~L~hfqr~Gh~~ialIGgATa~vG 110 (467)
T KOG2623|consen 31 DYLTELKARGLFQTSFPETLSKCSEDLNGRGLPQYVYCGFDPTAESLHVGNLLALMVLIHFQRAGHRPIALIGGATASVG 110 (467)
T ss_pred HHHHHHHhcccccccCCCccchhhhhhhcCCCCceEEecCCCcHHhhhhcchHHHHHHHHHHHcCCCceEEecccccccc
Confidence 445567777753 344443 22233333 3 7899999999999 9999999999999999999999999999999999
Q ss_pred CCCChhHHHHHH--------HHHHHHHHHHHHH------ccCCCCCeeEEEEcccccccc---ccHHH---HHHHHcccC
Q psy5948 94 NMKAPWELLALR--------TKYYEESIKAMLE------SIDVPISKLKFVKGTDYQLSK---EYTLD---VYRLSSVIT 153 (549)
Q Consensus 94 ~~~~~~~~~~~~--------~~~~~~~i~~~l~------a~Gldp~k~~i~~qS~~~~~~---~~~~~---~~~l~~~~t 153 (549)
||+++..-+... .+.+.+.+..++. .+|....+..|+.|++|+..- +|..+ .+|+++|+.
T Consensus 111 DPSGrktER~~l~~d~~~~N~~~I~~ql~~if~n~~~~~~~~~s~g~~~ivnN~dW~~d~~llDFLa~vGrh~RvgsMLa 190 (467)
T KOG2623|consen 111 DPSGRKTERGQLAEDTREANSRSITQQLCKIFENHPEYYRDGSSQGKYIIVNNSDWYKDIKLLDFLAEVGRHFRVGSMLA 190 (467)
T ss_pred CCCCCccchhhhhhHHHHHhHHHHHHHHHHHHhcChhhhcCCcccCceeEeechHHhhhchHHHHHHHhchhhhHHHHHH
Confidence 998774211111 1111222223332 235555788999999995332 22222 345666665
Q ss_pred HHHHHHhhHHHhhhccCCCcccchhhHHhhccccc----ccCcEEEecccchhhHHHHHHhhhhcCC--CceeEEecccc
Q psy5948 154 EHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEY----LKVDAQFGGVDQRKIFTLAEKYLPQLGY--AKRIHFMNPMV 227 (549)
Q Consensus 154 ~~~~k~~~~~~~~~~~~~~~~~~~YP~LqAaDil~----~~~d~~~gG~DQ~~~~~~~r~l~~~~~~--~~~~~l~~plL 227 (549)
+..++.+ ++..+++++.||+|.+|||+|+++ ++|++|+||+|||+|++.+.++++++-. ..+++++.|+|
T Consensus 191 r~SV~~R----Les~~GlSftEFtYQ~lQAYDfy~L~~~~g~~~QlGGsDQwGNitaG~dlI~ki~~~~~~vfGlT~PLl 266 (467)
T KOG2623|consen 191 RDSVKSR----LESPNGLSFTEFTYQLLQAYDFYHLYENYGCRFQLGGSDQWGNITAGTDLIRKIMPIQAFVFGLTFPLL 266 (467)
T ss_pred HHHHHHh----hcCCCCCcHHHHHHHHHHHHhHHHHHHhcCeeEEecccccccccchHHHHHHHhcccccceeeeeeeeE
Confidence 5555544 445678999999999999999999 5999999999999999999999999865 57899999999
Q ss_pred cCCCCCCccCCCCCCeeeccC---CHHHHHHHHHhccCCCCCCCcchhhchhhhheecccCCCcceeeeecccCCCCCCC
Q psy5948 228 PGLAGGKMSSSEEDSKIDLLD---APALVKKKLKKAFCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNF 304 (549)
Q Consensus 228 ~~l~G~KMSKS~~~s~I~L~D---sp~~i~kKI~~A~td~~~~~~~~v~~~~k~~lf~~~~~~~~~~i~~~~~~g~~~~~ 304 (549)
++.+|.|++||.+| +|||+. ||..+++..-+ ..|..|..+++ +|+++..
T Consensus 267 TsstG~KlGKSaGn-AvWLdp~~tspy~lYQfF~~-------~pDd~v~k~Lk--lfTfl~l------------------ 318 (467)
T KOG2623|consen 267 TSSTGAKLGKSAGN-AVWLDPSKTSPYHLYQFFAS-------LPDDDVEKFLK--LFTFLPL------------------ 318 (467)
T ss_pred ecCcchhhccCCCc-eEEecCccCCcHHHHHHHHh-------CchhHHHHHHH--HHhcCCH------------------
Confidence 99999999999996 999995 89999999987 36777888888 7776653
Q ss_pred CCHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCchhhhhcchHHHHHhhhcCCC
Q psy5948 305 SDYQSLEQVFAKQELHPADLKAAAEFYINRLLEPIRKKFESKELKDLTSKAYPP 358 (549)
Q Consensus 305 ~~~eel~~~~~~g~l~~~dlK~~Lae~l~~~l~pir~~~~~~e~~~~~~~~~~~ 358 (549)
+++++|.+...+ +....-..+.||+.|+.+++. ++- -++++.+.++.|+.
T Consensus 319 ~eI~~I~~~H~k-~P~~r~aQ~~LA~eVTr~VHG-~eg--L~~A~r~T~al~g~ 368 (467)
T KOG2623|consen 319 EEIKQILEEHRK-EPSQRIAQKLLAAEVTRMVHG-KEG--LEVAERCTKALFGA 368 (467)
T ss_pred HHHHHHHHHHhc-ChhhhhHHHHHHHHHHHHHcc-cch--HHHHHHHHHHhhcc
Confidence 577877666654 457778999999999999987 222 35577777877775
No 27
>KOG2145|consensus
Probab=100.00 E-value=3.2e-35 Score=286.72 Aligned_cols=291 Identities=18% Similarity=0.279 Sum_probs=239.2
Q ss_pred HHHHHHcccccccCHHHHHHHHh----cCCceEEEeecCCCc-cchhhhHHHHHHHHHHHc-CCcEEEEEeCceeeecCC
Q psy5948 22 KKQLITRNLQEFLGEDRLNVILK----ERDLKIYWGTATTGR-PHIAYFVPMSKIADFLRA-GCEVTILFADLHAYLDNM 95 (549)
Q Consensus 22 ~~~li~R~~~ei~~~~~L~~~l~----~~~~~v~~Gi~PTG~-lHIGn~~~~~~l~~l~~~-G~~v~ilIaD~~a~~~~~ 95 (549)
.+.++||++ +++|+++..+|+ ++|+.+|||..||.. |||||++|.+..+|||.. ....+|.+.|.+.++-.
T Consensus 58 ~h~flRrg~--fFshRDf~~iLd~~eq~kpFyLYTGRGpSS~smHlGHliPFiftKwlQe~F~vpLVIqlTDDEKflwK- 134 (397)
T KOG2145|consen 58 PHHFLRRGI--FFSHRDFNLILDAYEQGKPFYLYTGRGPSSESMHLGHLIPFIFTKWLQDVFDVPLVIQLTDDEKFLWK- 134 (397)
T ss_pred chHHhhhcc--eeecccHHHHHHHHHcCCceEEEeCCCCCccccccccchhHHHHHHHHHHhCCceEEEecccHHHHHh-
Confidence 467899999 999999888886 489999999999987 999999999988988865 77889999998887642
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHccCCCCCeeEEEEccccccccccHHHHHHHHcccCHHHHHHhhHHHhhhccCCCccc
Q psy5948 96 KAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLSKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSG 175 (549)
Q Consensus 96 ~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~k~~~~~~~~~~~~~~~~~ 175 (549)
+ ..+.+......++ ...+.|+|+||.++.||.+.++--...++.++.++.+++|.+.++..+. ...+..+|.
T Consensus 135 -~-l~~eda~~~arEN--aKDIia~GFDp~kTfIFsn~~y~g~~~fy~nivki~k~vt~nqa~~iFG----F~~sd~igk 206 (397)
T KOG2145|consen 135 -D-LTLEDAKKYAREN--AKDIIAVGFDPKKTFIFSNLDYMGGPAFYENIVKISKCVTLNQAKAIFG----FTDSDCIGK 206 (397)
T ss_pred -h-CcHHHHHHHHHhc--ccceEEeccCCcceEEEechhhccCcHHHHHHHHHhheechhhheeeec----cCCcccccc
Confidence 1 2333333333343 2467799999999999999988333478889999999999998776431 234557899
Q ss_pred chhhHHhhccccccc-----------CcEEEecccchhhHHHHHHhhhhcCCCceeEEecccccCCCC--CCccCCCCCC
Q psy5948 176 LLYPGLQALDEEYLK-----------VDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAG--GKMSSSEEDS 242 (549)
Q Consensus 176 ~~YP~LqAaDil~~~-----------~d~~~gG~DQ~~~~~~~r~l~~~~~~~~~~~l~~plL~~l~G--~KMSKS~~~s 242 (549)
+.+|..|||..+... .+++|...||.+.++++|++++++++.+|..|++.++|.|+| .|||-|++++
T Consensus 207 ~~Fpa~qaap~fssSFp~if~~~~~~~CLiPcAiDQDPyFRmtRDvA~rlg~~Kpali~stffpaLqG~~~KMSASdpns 286 (397)
T KOG2145|consen 207 IGFPAIQAAPSFSSSFPFIFGGRDDIPCLIPCAIDQDPYFRMTRDVAPRLGYPKPALIHSTFFPALQGAQTKMSASDPNS 286 (397)
T ss_pred ccCchhhhcccccccchhhcCCCcCCceeceeeccCChHHHhhhhhhhhhCCCCcceeehhhchhhhCcccccccCCCCc
Confidence 999999999987631 267889999999999999999999999999999999999999 7999999999
Q ss_pred eeeccCCHHHHHHHHHh-ccCCCCC-----------CCcchhhchhhhheecccCCCcceeeeecccCCCCCCCCCHHHH
Q psy5948 243 KIDLLDAPALVKKKLKK-AFCEPGN-----------VEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSL 310 (549)
Q Consensus 243 ~I~L~Dsp~~i~kKI~~-A~td~~~-----------~~~~~v~~~~k~~lf~~~~~~~~~~i~~~~~~g~~~~~~~~eel 310 (549)
+|||+|++++|++||.+ ||++++. ++-...++|+ + |.++++ ..+|++
T Consensus 287 ~Ifltdt~~qIk~KI~~~afSGGr~tiEeHRe~GGn~dVDV~~~YL--------s----FFldDD---------~kLeq~ 345 (397)
T KOG2145|consen 287 AIFLTDTAKQIKNKINKYAFSGGRDTIEEHRELGGNPDVDVSFQYL--------S----FFLDDD---------DKLEQI 345 (397)
T ss_pred eEEecCcHHHHHHHHHHhhccCCcchHHHHHHhCCCCcceehHHHH--------H----HHhccH---------HHHHHH
Confidence 99999999999999988 8887633 2222333443 3 333322 579999
Q ss_pred HHHHHcCCCChHHHHHHHHHHHHHhcCchhhhhc
Q psy5948 311 EQVFAKQELHPADLKAAAEFYINRLLEPIRKKFE 344 (549)
Q Consensus 311 ~~~~~~g~l~~~dlK~~Lae~l~~~l~pir~~~~ 344 (549)
..+|.+|++..+++|+.+.+.|..+++.+|++++
T Consensus 346 r~~Y~~G~mltgEmKk~~ievLq~~V~~hQa~Rk 379 (397)
T KOG2145|consen 346 RKDYTSGEMLTGEMKKLCIEVLQEFVSRHQAARK 379 (397)
T ss_pred HhhccccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999887
No 28
>PLN02610 probable methionyl-tRNA synthetase
Probab=100.00 E-value=2.2e-33 Score=319.70 Aligned_cols=148 Identities=54% Similarity=0.855 Sum_probs=140.4
Q ss_pred CCccccceeeeEEEEEecCCCCCceEEEEEEcCCCCCEEEEeCCccccccccCCCCEEEEEEeeccceecceecceeeec
Q psy5948 368 IAPHRLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCNLKPAKMRGIESAGMVLC 447 (549)
Q Consensus 368 ~~~~~~~i~vG~I~~v~~hp~adkL~v~~vd~G~~~~~~Ivsg~~~~~~~~~l~g~~v~v~~nlk~~k~~G~~SeGMllc 447 (549)
.+|++++||||+|++|++||+||+||+++||+|++++||||||+++++++|+|+|++|+|++||||++|||+.|+|||||
T Consensus 638 ~~~~~~dlrVg~I~~~~~hp~adkL~~~~Vd~G~~~~r~ivsG~~~~~~~e~l~G~~Vvv~~nlkp~klrGv~S~GMll~ 717 (801)
T PLN02610 638 IDVSRLDIRVGLIVKAEKHPDADSLYVEEIDVGEGAPRTVVSGLVKYIPLEEMQNRKVCVLCNLKPAAMRGIKSQAMVLA 717 (801)
T ss_pred ccceeeeeEEEEEEEEEeecCCCcceEEEEEeCCCceEEEEeCccccCChHHhCCCEEEEEEEecccccCCcccceeEEe
Confidence 58999999999999999999999999999999987899999999999999999999999999999999999999999998
Q ss_pred ccccccCCCeeEEEeCCCCCCCCceEEecCCCCCCCCcCCCCChhhHhhhccceeeCCCeeEEecCceeEE
Q psy5948 448 ASVEEEGNKKVEPLFVPPSSKAGDKIVVEGYETGAPDEILNPKKKVWEKLQVDLKTSSEGIAQWQGFNIYW 518 (549)
Q Consensus 448 ~~~~~~~~~~~~~l~~p~~~~~G~~i~~~~~~~~~~~~~l~~kk~~~~~~~~~l~~~~~~~~~~~~~~~~~ 518 (549)
+.++++ +.++++.||+++++|++|.|+|+++ +|+.+++||+|.|++|+++|+|+++|+|+|+|.||+|
T Consensus 718 a~~~~~--~~~~ll~~~~~~~~G~~v~~~~~~~-~p~~~~~~k~k~~~~~~~~l~~~~~~~~~~~~~~~~~ 785 (801)
T PLN02610 718 ASNSDH--TKVELVEPPESAAVGERVTFPGFEG-EPDDVLNPKKKVWETLQPDLHTNSELVACYKDVPFTT 785 (801)
T ss_pred cccCCC--CceEEEeCCCCCCCCCEEEeCCCCC-CcccccCcccchHHHhCCCCEECCceEEEECCEEEEe
Confidence 876442 4588999999999999999999976 8999999999999999999999999999999999987
No 29
>cd02798 tRNA_bind_CsaA tRNA-binding-domain-containing CsaA-like proteins. CsaA is a molecular chaperone with export related activities. CsaA has a putative tRNA binding activity. The functional unit of CsaA is a homodimer and this domain acts as a dimerization domain.
Probab=99.93 E-value=1.8e-26 Score=201.65 Aligned_cols=103 Identities=31% Similarity=0.462 Sum_probs=96.4
Q ss_pred CCccccceeeeEEEEEecCCCC-CceEEEEEEcCCCCCEEEEeCCccccccccCCCCEEEEEEeeccceecceecceeee
Q psy5948 368 IAPHRLDIRVGKIVEVSRHPDA-EALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCNLKPAKMRGIESAGMVL 446 (549)
Q Consensus 368 ~~~~~~~i~vG~I~~v~~hp~a-dkL~v~~vd~G~~~~~~Ivsg~~~~~~~~~l~g~~v~v~~nlk~~k~~G~~SeGMll 446 (549)
.+|.+++++||+|+++++||++ ++||+++||+|.++.|||+||++++|++|+|+|++|++++||||+||||+.||||||
T Consensus 4 ~~f~kldi~vG~V~~~~~~p~a~~kL~~~~Vd~G~~~~r~ivsg~~~~~~~e~l~gk~v~~v~Nlkp~k~~G~~S~gm~l 83 (107)
T cd02798 4 EDFEKVDLRVGTIVEVEDFPEARKPAYKLKVDFGEIGVKQSSAQITKYYKPEELIGRQVVAVVNFPPKQIAGVLSEVLVL 83 (107)
T ss_pred HHceeeeeEEEEEEEEEECCCcccceEEEEEEecCccceehhhhhhhcCCHHHhcCCcEEEEeCCCCceecceeccEEEE
Confidence 4588899999999999999999 999999999998678999999999999999999999999999999999999999999
Q ss_pred cccccccCCCeeEEEeCCCCCCCCceE
Q psy5948 447 CASVEEEGNKKVEPLFVPPSSKAGDKI 473 (549)
Q Consensus 447 c~~~~~~~~~~~~~l~~p~~~~~G~~i 473 (549)
|+.++. +.+.++.||.++++|+||
T Consensus 84 ~~~~~~---~~~~~~~~~~~~~~G~~i 107 (107)
T cd02798 84 GADDEG---GEVVLLVPDREVPNGAKV 107 (107)
T ss_pred EEEcCC---CcEEEecCCCCCCCcCCC
Confidence 987653 468899999999999986
No 30
>TIGR02222 chap_CsaA export-related chaperone CsaA. This model describes Bacillus subtilis CsaA, an export-related chaperone that interacts with the Sec system, and related proteins from a number of other bacteria and archaea. The crystal structure is known for the homodimer from Thermus thermophilus.
Probab=99.93 E-value=2.9e-26 Score=200.11 Aligned_cols=103 Identities=30% Similarity=0.433 Sum_probs=95.6
Q ss_pred CccccceeeeEEEEEecCCCCCc-eEEEEEEcCCC-CCEEEEeCCccccccccCCCCEEEEEEeeccceecceecceeee
Q psy5948 369 APHRLDIRVGKIVEVSRHPDAEA-LYVEKIDLGEE-NPRTIVSGLVNYVKEGDMANRLVVVLCNLKPAKMRGIESAGMVL 446 (549)
Q Consensus 369 ~~~~~~i~vG~I~~v~~hp~adk-L~v~~vd~G~~-~~~~Ivsg~~~~~~~~~l~g~~v~v~~nlk~~k~~G~~SeGMll 446 (549)
+|.++++|||+|+++++||+++| ||+++||+|.+ +.|||+||+..+|++|+|+|++|+++|||+|++|||+.||||||
T Consensus 3 ~f~kldlrvg~I~~~~~~p~a~k~L~~l~vd~G~~~~~r~ivsgi~~~~~~e~L~gk~v~~v~Nl~p~k~~G~~S~gMil 82 (107)
T TIGR02222 3 DFEKLDLRVGRIVRAEPFPEARKPAYKLWVDFGTEIGVKQSSAQITKLYKPEDLIGRLVVAVVNFPPKQIAGFLSEVLVL 82 (107)
T ss_pred hhhhhhheeEEEEEEeecCCcccceeEEEEEecCcCCcceEehhhhhhCCHHHhCCCeEEEEECCCCceeCCccccEEEE
Confidence 57889999999999999999998 99999999974 46999999999999999999999999999999999999999999
Q ss_pred cccccccCCCeeEEEeCCCCCCCCceEE
Q psy5948 447 CASVEEEGNKKVEPLFVPPSSKAGDKIV 474 (549)
Q Consensus 447 c~~~~~~~~~~~~~l~~p~~~~~G~~i~ 474 (549)
|+.++. +.+.++.|+.++++|+||+
T Consensus 83 ~~~~~~---~~~~l~~~~~~~~~G~~v~ 107 (107)
T TIGR02222 83 GVIDEQ---GRVVLLQPDRPVPNGTKIA 107 (107)
T ss_pred EEECCC---CeEEEecCCCCCCCcCCcC
Confidence 997654 4588999999999999973
No 31
>PRK10089 tRNA-binding protein; Provisional
Probab=99.92 E-value=6.9e-26 Score=199.54 Aligned_cols=105 Identities=29% Similarity=0.369 Sum_probs=97.4
Q ss_pred CCCccccceeeeEEEEEecCCCCCce-EEEEEEcCCC-CCEEEEeCCccccccccCCCCEEEEEEeeccceecceeccee
Q psy5948 367 IIAPHRLDIRVGKIVEVSRHPDAEAL-YVEKIDLGEE-NPRTIVSGLVNYVKEGDMANRLVVVLCNLKPAKMRGIESAGM 444 (549)
Q Consensus 367 ~~~~~~~~i~vG~I~~v~~hp~adkL-~v~~vd~G~~-~~~~Ivsg~~~~~~~~~l~g~~v~v~~nlk~~k~~G~~SeGM 444 (549)
..+|.++++|||+|+++++||++++| |+++||+|.+ +.|||+||++.+|++|+|+|++|+++|||||++|||+.||||
T Consensus 6 ~~~f~kldlrvg~I~~~~~~p~a~kL~~~l~vd~G~~~~~r~i~sgl~~~~~~eel~gk~v~~v~Nlkp~~~~G~~S~gm 85 (112)
T PRK10089 6 YEDFEKVDIRVGTIVEAEPFPEARKPAYKLWIDFGEEIGVKQSSAQITPHYTPEELIGKQVVAVVNFPPKQIAGFMSEVL 85 (112)
T ss_pred HhHhhhhheeeEEEEEEEEcCCcCcceEEEEEEecCccCcceEehhhcccCCHHHHccCcEEEEECCCcceecCccccEE
Confidence 45688899999999999999999999 9999999985 489999999999999999999999999999999999999999
Q ss_pred eecccccccCCCeeEEEeCCCCCCCCceEE
Q psy5948 445 VLCASVEEEGNKKVEPLFVPPSSKAGDKIV 474 (549)
Q Consensus 445 llc~~~~~~~~~~~~~l~~p~~~~~G~~i~ 474 (549)
|||+++++ +.++++.||.++++|+||+
T Consensus 86 il~~~~~~---~~~~l~~p~~~~~~G~~i~ 112 (112)
T PRK10089 86 VLGFEDED---GEVVLLTPDRPVPNGVKLV 112 (112)
T ss_pred EEEEEcCC---CeEEEecCCCCCCCcCCcC
Confidence 99998765 3588999999999999973
No 32
>cd02799 tRNA_bind_EMAP-II_like tRNA-binding-domain-containing EMAP2-like proteins. This family contains a diverse fraction of tRNA binding proteins, including Caenorhabditis elegans methionyl-tRNA synthetase (CeMetRS), human tyrosyl- tRNA synthetase (hTyrRS), Saccharomyces cerevisiae Arc1p, human p43 and EMAP2. CeMetRS and hTyrRS aminoacylate their cognate tRNAs. Arc1p is a transactivator of yeast methionyl-tRNA and glutamyl-tRNA synthetases. This domain has general tRNA binding properties. In a subset of this family this domain has the added capability of a cytokine. For example the p43 component of the Human aminoacyl-tRNA synthetase complex is cleaved to release EMAP-II cytokine. EMAP-II has multiple activities during apoptosis, angiogenesis and inflammation and participates in malignant transformation. A EMAP-II-like cytokine also is released from hTyrRS upon cleavage. The active cytokine heptapeptide locates to this domain.
Probab=99.92 E-value=2.7e-25 Score=194.00 Aligned_cols=103 Identities=65% Similarity=1.057 Sum_probs=96.7
Q ss_pred CccccceeeeEEEEEecCCCCCceEEEEEEcCCCCCEEEEeCCccccccccCCCCEEEEEEeeccceecceecceeeecc
Q psy5948 369 APHRLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCNLKPAKMRGIESAGMVLCA 448 (549)
Q Consensus 369 ~~~~~~i~vG~I~~v~~hp~adkL~v~~vd~G~~~~~~Ivsg~~~~~~~~~l~g~~v~v~~nlk~~k~~G~~SeGMllc~ 448 (549)
+|.+++++||+|+++++||++++|++++||+|.++.+||+||+.+++++++++|++|++++||+|++|+|+.||||+||+
T Consensus 2 ~f~~~~i~vg~I~~~~~~p~s~kL~~l~Vd~G~~~~~~Ivsg~~~~~~~~~~~g~~v~~l~nl~~~~~~G~~S~GMll~~ 81 (105)
T cd02799 2 DPSRLDIRVGKILKVRKHPDADSLYVEEIDLGEEEPRTIVSGLVKFVPLEQMQNRLVVVLCNLKPRKMRGVKSQGMVLCA 81 (105)
T ss_pred CceEEEEEEEEEEEEEecCCCCccEEEEEEeCCCcEEEEEcCccccCCHHHhCCCEEEEEEeeccceECCeeeceEEEEe
Confidence 58889999999999999999999999999999877899999999999999999999999999999999999999999998
Q ss_pred cccccCCCeeEEEeCCCCCCCCceE
Q psy5948 449 SVEEEGNKKVEPLFVPPSSKAGDKI 473 (549)
Q Consensus 449 ~~~~~~~~~~~~l~~p~~~~~G~~i 473 (549)
+++++ ..+.+++||.++++|++|
T Consensus 82 ~~~~~--~~~~~~~~~~~~~~G~~i 104 (105)
T cd02799 82 SNADH--EKVELLEPPEGAKPGERV 104 (105)
T ss_pred ccCCC--CcEEEEECCCCCCCCCEe
Confidence 87652 457899999999999998
No 33
>PF01588 tRNA_bind: Putative tRNA binding domain; InterPro: IPR002547 This domain is found in prokaryotic methionyl-tRNA synthetases, prokaryotic phenylalanyl tRNA synthetases the yeast GU4 nucleic-binding protein (G4p1 or p42, ARC1) [], human tyrosyl-tRNA synthetase [], and endothelial-monocyte activating polypeptide II. G4p1 binds specifically to tRNA form a complex with methionyl-tRNA synthetases []. In human tyrosyl-tRNA synthetase this domain may direct tRNA to the active site of the enzyme []. This domain may perform a common function in tRNA aminoacylation [].; GO: 0000049 tRNA binding; PDB: 3BU2_C 1PYB_A 2Q2I_A 2Q2H_A 1JJC_B 1EIY_B 1PYS_B 3HFZ_B 3TEH_B 2CWP_A ....
Probab=99.91 E-value=1.2e-24 Score=186.53 Aligned_cols=95 Identities=45% Similarity=0.733 Sum_probs=85.6
Q ss_pred eeeeEEEEEecCCCCCceEEEEEEcCCCCCEEEEeCCccccccccCCCCEEEEEEeeccceecceecceeeecccccccC
Q psy5948 375 IRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCNLKPAKMRGIESAGMVLCASVEEEG 454 (549)
Q Consensus 375 i~vG~I~~v~~hp~adkL~v~~vd~G~~~~~~Ivsg~~~~~~~~~l~g~~v~v~~nlk~~k~~G~~SeGMllc~~~~~~~ 454 (549)
||||+|++|++||++||||+|+||+|+++ ||||||++|++.+++|+|+.+++++|+++++|+|+.||||+ |+..+.+
T Consensus 1 i~vg~I~~~~~hp~sdkL~~~~Vd~G~~~-~~Ivsg~~n~~~~~~lv~~~~~~v~n~~~~~i~Gv~SeGMl-ls~~e~~- 77 (95)
T PF01588_consen 1 IRVGKILEVEPHPNSDKLYVLKVDIGEEE-RQIVSGAKNVYEPEVLVGKKVVVVANLKPRKIRGVESEGML-LSASELG- 77 (95)
T ss_dssp EEEEEEEEEEEETTSSSEEEEEEESSSSE-EEEEESCTTTSTHHHHTTTEEEEETTSCBEEETTEEEESEE--EEECST-
T ss_pred CEEEEEEEEEECCCCCEEEEEEEEeCCce-EEEEeccccccChhhhcceeEEEEEccCCcEEEeccCCEEE-EEeeccC-
Confidence 69999999999999999999999999976 99999999999999999999999999999999999999999 5555421
Q ss_pred CCeeEEEeCCCCCCCCce
Q psy5948 455 NKKVEPLFVPPSSKAGDK 472 (549)
Q Consensus 455 ~~~~~~l~~p~~~~~G~~ 472 (549)
.+..+++.||+++|+|++
T Consensus 78 ~~~~~ll~~~~~~~~G~~ 95 (95)
T PF01588_consen 78 DGSVGLLVLPDDAPPGED 95 (95)
T ss_dssp SSEEEEEEESSTS-TTSB
T ss_pred CCCEEEEECCCCCCCCCC
Confidence 366789999999999986
No 34
>COG0073 ARC1 EMAP domain [General function prediction only]
Probab=99.90 E-value=4.7e-24 Score=191.01 Aligned_cols=107 Identities=39% Similarity=0.602 Sum_probs=96.5
Q ss_pred cCCCccccceeeeEEEEEecCCCCCceEEEEEEcCCC-CCEEEEeCCccccccccCCCCEEEEEEe---eccceecceec
Q psy5948 366 DIIAPHRLDIRVGKIVEVSRHPDAEALYVEKIDLGEE-NPRTIVSGLVNYVKEGDMANRLVVVLCN---LKPAKMRGIES 441 (549)
Q Consensus 366 ~~~~~~~~~i~vG~I~~v~~hp~adkL~v~~vd~G~~-~~~~Ivsg~~~~~~~~~l~g~~v~v~~n---lk~~k~~G~~S 441 (549)
...+|.+.++|||+|+++++||+||||++|+||+|++ ++||||||++|+|+.+++.++++.+++| |||++|||+.|
T Consensus 12 ~~~~~~~~~l~vg~V~~~~~~p~adkL~~~~Vd~G~~~~~~qiv~G~~n~~~~~~vv~a~v~~v~~~~~ikp~klrG~~S 91 (123)
T COG0073 12 EIDDFAKVDLRVGKVVEAEPHPNADKLLVLKVDLGDEKEPRQIVCGAPNFYAGEKLVGAKVGAVLNGGKLKPAKLRGVES 91 (123)
T ss_pred cccccccCCeEEEEEEEeEECCCCCeeEEEEEEcCCCCcEEEEEcCCccccCCceeeeeeEEEEeCCCcccceeecCccc
Confidence 4567889999999999999999999999999999985 4899999999999999999999999999 99999999999
Q ss_pred ceeeecccccccCCC-eeEEEeCCCCCCCCceE
Q psy5948 442 AGMVLCASVEEEGNK-KVEPLFVPPSSKAGDKI 473 (549)
Q Consensus 442 eGMllc~~~~~~~~~-~~~~l~~p~~~~~G~~i 473 (549)
+||| ||..++++.. ...|+++|+++++|+++
T Consensus 92 ~GMi-cs~~e~~~~~~~~~il~~~~~~~~g~~~ 123 (123)
T COG0073 92 EGML-LSAEELGLSDENVGILTLDEGVPPGTKV 123 (123)
T ss_pred ceEE-EEcccCCCccccceEEeCCCCCCCCCCC
Confidence 9999 6666665443 47899999999999863
No 35
>cd02153 tRNA_bindingDomain The tRNA binding domain is also known as the Myf domain in literature. This domain is found in a diverse collection of tRNA binding proteins, including prokaryotic phenylalanyl tRNA synthetases (PheRS), methionyl-tRNA synthetases (MetRS), human tyrosyl-tRNA synthetase(hTyrRS), Saccharomyces cerevisiae Arc1p, Thermus thermophilus CsaA, Aquifex aeolicus Trbp111, human p43 and human EMAP-II. PheRS, MetRS and hTyrRS aminoacylate their cognate tRNAs. Arc1p is a transactivator of yeast methionyl-tRNA and glutamyl-tRNA synthetases. The molecular chaperones Trbp111 and CsaA also contain this domain. CsaA has export related activities; Trbp111 is structure-specific recognizing the L-shape of the tRNA fold. This domain has general tRNA binding properties. In a subset of this family this domain has the added capability of a cytokine. For example the p43 component of the Human aminoacyl-tRNA synthetase complex is cleaved to release EMAP-II cytokine. EMAP-II has multi
Probab=99.89 E-value=2.2e-23 Score=180.04 Aligned_cols=98 Identities=47% Similarity=0.730 Sum_probs=89.5
Q ss_pred eeeeEEEEEecCCCCCceEEEEEEcCCCCCEEEEeCCccccccccCCCCEEEEEEeeccceecceecceeeecccccccC
Q psy5948 375 IRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCNLKPAKMRGIESAGMVLCASVEEEG 454 (549)
Q Consensus 375 i~vG~I~~v~~hp~adkL~v~~vd~G~~~~~~Ivsg~~~~~~~~~l~g~~v~v~~nlk~~k~~G~~SeGMllc~~~~~~~ 454 (549)
++||+|+++++||++++||+++||+|.++.++|+||+++++++|+++|++|++++||+|++|+|+.|+||| |+..++++
T Consensus 1 ~~vg~I~~~~~~p~~~kL~~~~vd~G~~~~~~ivsg~~~~~~~~~~~g~~v~~~~~l~~~~~~g~~S~GMl-~s~~~~g~ 79 (99)
T cd02153 1 LRVGKIVEAEPHPNADKLYVLKVDIGEEKPRQIVSGAANVYPPEELVGKKVVVAVNLKPKKLRGVESEGML-LSAEELGL 79 (99)
T ss_pred CEEEEEEEEEECCCCCCCEEEEEEeCCCcEEEEEeCCcccCChHHhCCCEEEEEEecccccCCCeecccEE-eeccccCC
Confidence 68999999999999999999999999877899999999999999999999999999999999999999999 56666654
Q ss_pred C-CeeEEEeCCCCCCCCceE
Q psy5948 455 N-KKVEPLFVPPSSKAGDKI 473 (549)
Q Consensus 455 ~-~~~~~l~~p~~~~~G~~i 473 (549)
. +...++.||.++++|+++
T Consensus 80 ~~~~~~i~~~~~~~~~G~~~ 99 (99)
T cd02153 80 EEGSVGILELPEDAPVGDRI 99 (99)
T ss_pred CCCceEEEECCCCCCCCCcC
Confidence 3 346799999999999875
No 36
>cd02800 tRNA_bind_EcMetRS_like tRNA-binding-domain-containing Escherichia coli methionyl-tRNA synthetase (EcMetRS)-like proteins. This family includes EcMetRS and Aquifex aeolicus Trbp111 (AaTrbp111). This domain has general tRNA binding properties. MetRS aminoacylates methionine transfer RNAs (tRNAmet). AaTrbp111 is structure-specific molecular chaperone recognizing the L-shape of the tRNA fold. AaTrbp111 plays a role in nuclear trafficking of tRNAs. The functional unit of EcMetRs and AaTrbp111 is a homodimer, this domain acts as the dimerization domain.
Probab=99.89 E-value=2.4e-23 Score=181.72 Aligned_cols=101 Identities=36% Similarity=0.595 Sum_probs=93.7
Q ss_pred CCccccceeeeEEEEEecCCCCCceEEEEEEcCCCCCEEEEeCCccccccccCCCCEEEEEEeeccceecceecceeeec
Q psy5948 368 IAPHRLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCNLKPAKMRGIESAGMVLC 447 (549)
Q Consensus 368 ~~~~~~~i~vG~I~~v~~hp~adkL~v~~vd~G~~~~~~Ivsg~~~~~~~~~l~g~~v~v~~nlk~~k~~G~~SeGMllc 447 (549)
.+|..+++|||+|+++++||++++||+++||+|. +.++|+||+++++.++++.|++|++++||+|++|||+.|+||+||
T Consensus 4 ~~~~~ldi~vg~I~~~~~~p~a~kL~~~~vd~G~-~~~~iv~g~~~~~~~~~l~g~~v~~~~nl~~~~~~Gv~S~GMl~s 82 (105)
T cd02800 4 DDFAKVDLRVGKVLEAERVEGSDKLLKLTVDLGE-EERQIVSGIAKFYPPEELVGKKVVVVANLKPRKLRGVESQGMILA 82 (105)
T ss_pred HHceeeeEEEEEEEEEEecCCCCcceEEEEEeCC-eEEEEEeCcccccCHhHhccCceEeEeeECCccCCCeEeceEEEE
Confidence 3578899999999999999999999999999998 689999999999999999999999999999999999999999976
Q ss_pred ccccccCCCeeEEEeCCCCCCCCceE
Q psy5948 448 ASVEEEGNKKVEPLFVPPSSKAGDKI 473 (549)
Q Consensus 448 ~~~~~~~~~~~~~l~~p~~~~~G~~i 473 (549)
+.++ +.++++.||.++++|+||
T Consensus 83 ~~~~----~~~~l~~~~~~~~~G~~i 104 (105)
T cd02800 83 AEDG----GKLKLLTPDEEVEPGSRV 104 (105)
T ss_pred ecCC----CeEEEEeCCCCCCCcCCc
Confidence 6553 468899999999999997
No 37
>TIGR00399 metG_C_term methionyl-tRNA synthetase C-terminal region/beta chain. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model describes a region of the methionyl-tRNA synthetase that is present at the C-terminus of MetG in some species (E. coli, B. subtilis, Thermotoga maritima, Methanobacterium thermoautotrophicum), and as a separate beta chain in Aquifex aeolicus. It is absent in a number of other species (e.g. Mycoplasma genitalium, Mycobacterium tuberculosis), while Pyrococcus horikoshii has both a full length MetG and a second protein homologous to the beta chain only. Proteins hit by this model should called methionyl-tRNA synthetase beta chain if and only if the model metG hits a separate protein not also hit by this model.
Probab=99.88 E-value=1.3e-22 Score=184.55 Aligned_cols=105 Identities=37% Similarity=0.582 Sum_probs=96.5
Q ss_pred CcCCCccccceeeeEEEEEecCCCCCceEEEEEEcCCCCCEEEEeCCccccccccCCCCEEEEEEeeccceecceeccee
Q psy5948 365 SDIIAPHRLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCNLKPAKMRGIESAGM 444 (549)
Q Consensus 365 ~~~~~~~~~~i~vG~I~~v~~hp~adkL~v~~vd~G~~~~~~Ivsg~~~~~~~~~l~g~~v~v~~nlk~~k~~G~~SeGM 444 (549)
....+|..++++||+|+++++||++++||+++||+|.+ .+|||||+..++.++++.|++|++++||+|++|||+.|+||
T Consensus 32 ~~~~~f~kldi~Vg~I~eve~hp~adkL~v~~Vd~G~~-~~qIvsg~~~~~~~~~l~G~~v~~~~nlkp~k~~Gv~S~GM 110 (137)
T TIGR00399 32 ITIDDFEKVDLRVGKILKAERVEKSDKLLKLKLDLGDE-KRQIVSGIAGYYTPEELVGKKVIVVANLKPAKLFGVKSEGM 110 (137)
T ss_pred cCHhhceeeeeEEEEEEEEeecCCCCcceEEEEEeCCc-eEEEEeCcccCcCHhHcCCCEEEeeEEecCccCCCeEeccE
Confidence 44567899999999999999999999999999999985 69999999999999999999999999999999999999999
Q ss_pred eecccccccCCCeeEEEeCCCCCCCCceE
Q psy5948 445 VLCASVEEEGNKKVEPLFVPPSSKAGDKI 473 (549)
Q Consensus 445 llc~~~~~~~~~~~~~l~~p~~~~~G~~i 473 (549)
|||+.+++ +.+.++.||.++++|+||
T Consensus 111 lls~~~~~---~~~~l~~~~~~~~~G~~i 136 (137)
T TIGR00399 111 ILAAEDDG---KVLFLLSPDQEAIAGERI 136 (137)
T ss_pred EEEEecCC---CeEEEecCCCCCCCcCCc
Confidence 97776644 368899999999999987
No 38
>cd02796 tRNA_bind_bactPheRS tRNA-binding-domain-containing prokaryotic phenylalanly tRNA synthetase (PheRS) beta chain. PheRS aminoacylate phenylalanine transfer RNAs (tRNAphe). PheRSs belong structurally to class II aminoacyl tRNA synthetases (aaRSs) but, as they aminoacylate the 2'OH of the terminal ribose of tRNA they belong functionally to class 1 aaRSs. This domain has general tRNA binding properties and is believed to direct tRNAphe to the active site of the enzyme.
Probab=99.82 E-value=2.9e-20 Score=161.71 Aligned_cols=93 Identities=39% Similarity=0.600 Sum_probs=84.8
Q ss_pred eeeeEEEEEecCCCCCceEEEEEEcCCCCCEEEEeCCccccccccCCCCEEEEEE---------eeccceecceecceee
Q psy5948 375 IRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLC---------NLKPAKMRGIESAGMV 445 (549)
Q Consensus 375 i~vG~I~~v~~hp~adkL~v~~vd~G~~~~~~Ivsg~~~~~~~~~l~g~~v~v~~---------nlk~~k~~G~~SeGMl 445 (549)
++||+|+++++||++++|++++||+|.++.+||+||+.|+. +|++|++++ ||++++|+|+.|+|||
T Consensus 1 ~~vg~I~~~~~hp~~~kL~~~~vd~g~~~~~~Iv~~~~n~~-----~g~~vvv~~~gs~l~~~~~i~~~~~~G~~S~GMl 75 (103)
T cd02796 1 VVVGKVLEVEPHPNADKLNVCKVDIGENKPLQIVCGAPNVR-----AGDKVVVALPGAVLPGGLKIKKRKLRGVESEGML 75 (103)
T ss_pred CEEEEEEEEEecCCCCceEEEEEEeCCCcEEEEEcCccHhh-----cCCEEEEEecCCCcCCCceEcceeeCCcccchhC
Confidence 68999999999999999999999999867899999999996 899999987 9999999999999999
Q ss_pred ecccccccCCC-eeEEEeCCCCCCCCceE
Q psy5948 446 LCASVEEEGNK-KVEPLFVPPSSKAGDKI 473 (549)
Q Consensus 446 lc~~~~~~~~~-~~~~l~~p~~~~~G~~i 473 (549)
||+.|+|+.+ +..++++|+++++|+.+
T Consensus 76 -~s~~elg~~~~~~gi~~l~~~~~~G~~~ 103 (103)
T cd02796 76 -CSAKELGLGEDSDGIIELPEDAPVGTDI 103 (103)
T ss_pred -cchhHcCCCCCCCeEEECCCCCCCCCCC
Confidence 8888887753 35799999999999863
No 39
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=99.78 E-value=2.5e-19 Score=202.66 Aligned_cols=103 Identities=36% Similarity=0.592 Sum_probs=94.7
Q ss_pred CCCccccceeeeEEEEEecCCCCCceEEEEEEcCCCCCEEEEeCCccccccccCCCCEEEEEEeeccceecceecceeee
Q psy5948 367 IIAPHRLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCNLKPAKMRGIESAGMVL 446 (549)
Q Consensus 367 ~~~~~~~~i~vG~I~~v~~hp~adkL~v~~vd~G~~~~~~Ivsg~~~~~~~~~l~g~~v~v~~nlk~~k~~G~~SeGMll 446 (549)
..+|+++++|||+|++|++||++|+||+|+||+|+++++|||||+++++.+++++|++|++++||+|++|||+.|+||||
T Consensus 545 ~~~f~~~d~~vg~i~~~~~~p~adkL~~~~vd~G~~~~~~iv~g~~~~~~~~~l~g~~v~~~~nl~~~~~~Gv~S~gMl~ 624 (648)
T PRK12267 545 IDDFDKVELRVAEVLEAEKVEKSDKLLKLQVDLGEEEPRQIVSGIAKFYPPEELVGKKVVVVANLKPAKLMGEESQGMIL 624 (648)
T ss_pred HhhhhhhceeEEEEEeeccCCCCCccceEEEEeCCCceEEEEeCCcccCCHhHhCCCeEEEEEeecccccCCcccceEEE
Confidence 35799999999999999999999999999999998778999999999999999999999999999999999999999996
Q ss_pred cccccccCCCeeEEEeCCCCCCCCceE
Q psy5948 447 CASVEEEGNKKVEPLFVPPSSKAGDKI 473 (549)
Q Consensus 447 c~~~~~~~~~~~~~l~~p~~~~~G~~i 473 (549)
|+.. . +.++++.||+++++|++|
T Consensus 625 s~~~-~---~~~~l~~~~~~~~~G~~~ 647 (648)
T PRK12267 625 AAED-D---GKLTLLTVDKEVPNGSKV 647 (648)
T ss_pred Eecc-C---CeEEEEeCCCCCCCcCCC
Confidence 6554 2 457899999999999986
No 40
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=99.76 E-value=1e-18 Score=198.26 Aligned_cols=101 Identities=35% Similarity=0.495 Sum_probs=91.9
Q ss_pred CCccccceeeeEEEEEecCCCCCceEEEEEEcCCCCCEEEEeCCccccccccCCCCEEEEEEeecccee-cceecceeee
Q psy5948 368 IAPHRLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCNLKPAKM-RGIESAGMVL 446 (549)
Q Consensus 368 ~~~~~~~i~vG~I~~v~~hp~adkL~v~~vd~G~~~~~~Ivsg~~~~~~~~~l~g~~v~v~~nlk~~k~-~G~~SeGMll 446 (549)
.+|.+++||||+|++|++||++++||+|+||+|++ ++|||||+++++.+++|+|++|++++||+|++| +|+ |+||||
T Consensus 571 ~~f~~~di~vg~I~~~~~~p~~~~l~~~~vd~G~~-~~~iv~g~~~~~~~~~l~G~~v~~~~nlkp~~~~~Gv-S~gMl~ 648 (673)
T PRK00133 571 DDFAKVDLRVAKIVEAEKVEGADKLLKLTLDLGEE-TRQVFSGIKSAYDPEELVGKLVVMVANLAPRKMKFGV-SEGMVL 648 (673)
T ss_pred HHHhhhhcceeeeEeeecCCCCCccceeeEecCCc-eeEEEcCccccCCHHHHhcCeeEEEEeeccccccCCc-cceeEE
Confidence 46899999999999999999999999999999986 899999999999999999999999999999999 999 999997
Q ss_pred cccccccCCCeeEEEeCCCCCCCCceE
Q psy5948 447 CASVEEEGNKKVEPLFVPPSSKAGDKI 473 (549)
Q Consensus 447 c~~~~~~~~~~~~~l~~p~~~~~G~~i 473 (549)
|+.++. +.+.++.++.++++|++|
T Consensus 649 ~~~~~~---~~i~~l~~~~~~~~G~~~ 672 (673)
T PRK00133 649 AAGPGG---GDLFLLEPDEGAKPGMRV 672 (673)
T ss_pred EeecCC---CcEEEecCCCCCCCCCcC
Confidence 766432 357778878899999986
No 41
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end, however.
Probab=99.71 E-value=3.7e-18 Score=196.93 Aligned_cols=135 Identities=28% Similarity=0.400 Sum_probs=112.8
Q ss_pred cceeeeEEEEEecCCCCCceEEEEEEcCCCCCEEEEeCCccccccccCCCCEEEEE---------Eeeccceecceecce
Q psy5948 373 LDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVL---------CNLKPAKMRGIESAG 443 (549)
Q Consensus 373 ~~i~vG~I~~v~~hp~adkL~v~~vd~G~~~~~~Ivsg~~~~~~~~~l~g~~v~v~---------~nlk~~k~~G~~SeG 443 (549)
.+++||+|++|++||++|+|++|+||+|+++.+|||||+.|+. .|++|+|+ .+|++++|||+.|+|
T Consensus 44 ~~~~vg~i~~~~~hp~~~~L~~~~vd~g~~~~~~Iv~ga~n~~-----~g~~V~va~~Ga~l~~~~~i~~~~~~Gv~S~G 118 (798)
T TIGR00472 44 KGVVVGKVLEVEPHPNADKLKVCKVDIGEKEMLQIVCGAPNVE-----AGKKVAVALPGAKLPNGLKIKKSKLRGVESEG 118 (798)
T ss_pred CCEEEEEEEEEEecCCCCcEEEEEEEcCCCceEEEEeCCcccc-----CCCEEEEEccCCCccCCceEeeeecCCeeech
Confidence 4699999999999999999999999999777899999999987 79999998 579999999999999
Q ss_pred eeecccccccCCCe-eEEEeCCCCCCCCceE-EecCCCCCCCCcCCCCChhhHhhhccceeeCCCeeEEecCceeE
Q psy5948 444 MVLCASVEEEGNKK-VEPLFVPPSSKAGDKI-VVEGYETGAPDEILNPKKKVWEKLQVDLKTSSEGIAQWQGFNIY 517 (549)
Q Consensus 444 Mllc~~~~~~~~~~-~~~l~~p~~~~~G~~i-~~~~~~~~~~~~~l~~kk~~~~~~~~~l~~~~~~~~~~~~~~~~ 517 (549)
|+ ||..|+|+.+. .+++++|+++++|+++ .+.|+++...+-.++|+|.. +.+.+.+. +.++.|-|.++.
T Consensus 119 Ml-cs~~elg~~~~~~gi~~l~~~~~~G~~~~~~l~l~D~i~ei~itpNR~D---~lS~~GiA-Relaa~~~~~l~ 189 (798)
T TIGR00472 119 ML-CSEDELGLDEKSDGIIVLDEDAPLGTDIAEYLGLDDDIIEVSITPNRGD---CLSILGIA-RELAALFDLPLE 189 (798)
T ss_pred hc-ccHhHcCCCCCCCCEEEcCCCCCCCccHHHHhCCCCeEEEEecCCChHH---HHHhHHHH-HHHHHhhCCCCC
Confidence 98 99999987544 4689999999999999 55677776677788999864 34455663 556666665543
No 42
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=99.68 E-value=4.4e-17 Score=187.81 Aligned_cols=135 Identities=28% Similarity=0.411 Sum_probs=112.6
Q ss_pred ccceeeeEEEEEecCCCCCceEEEEEEcCCCCCEEEEeCCccccccccCCCCEEEEE---------Eeeccceecceecc
Q psy5948 372 RLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVL---------CNLKPAKMRGIESA 442 (549)
Q Consensus 372 ~~~i~vG~I~~v~~hp~adkL~v~~vd~G~~~~~~Ivsg~~~~~~~~~l~g~~v~v~---------~nlk~~k~~G~~Se 442 (549)
..+++||+|++|++||++|+|++|+||+|+ +.+|||||++|+. .|++|+|+ .+|++++|||+.|+
T Consensus 42 ~~~i~vg~i~~~~~hp~~~~L~v~~v~~g~-~~~~iv~ga~n~~-----~g~~v~~a~~G~~l~~~~~i~~~~~~Gv~S~ 115 (791)
T PRK00629 42 LSGVVVGKVLECEKHPNADKLRVCQVDVGE-EPLQIVCGAPNVR-----AGDKVPVALPGAVLPGGFKIKKAKLRGVESE 115 (791)
T ss_pred CCCEEEEEEEEEEecCCCCeEEEEEEEcCC-eEEEEEeCCcccc-----CCCEEEEEccCCCccCCceEeeeecCCeEEc
Confidence 467999999999999999999999999998 4699999999997 79999995 35999999999999
Q ss_pred eeeecccccccCCCe-eEEEeCCCCCCCCceE-EecCCCCCCCCcCCCCChhhHhhhccceeeCCCeeEEecCceeE
Q psy5948 443 GMVLCASVEEEGNKK-VEPLFVPPSSKAGDKI-VVEGYETGAPDEILNPKKKVWEKLQVDLKTSSEGIAQWQGFNIY 517 (549)
Q Consensus 443 GMllc~~~~~~~~~~-~~~l~~p~~~~~G~~i-~~~~~~~~~~~~~l~~kk~~~~~~~~~l~~~~~~~~~~~~~~~~ 517 (549)
||+ ||+.|+|+.+. -+|+++|+++++|+.+ .+.++++...+-.++|+|..+ .+.+.+. +.+|.|-|.++.
T Consensus 116 GMl-cs~~ELGl~~~~~GI~~L~~~~~~G~~~~~~l~l~D~iiei~iTpNR~D~---lS~~GiA-RElaa~~~~~~~ 187 (791)
T PRK00629 116 GML-CSASELGLSDDHDGIIELPEDAPVGTDAREYLGLDDTVIEISLTPNRADC---LSVRGIA-RELAALLGLPLK 187 (791)
T ss_pred hhc-ccHhHcCCCcCCCCeEECCCCCCCCccHHHHhCCCCeEEEEecCCChHHH---HHhHHHH-HHHHHhhCCCCC
Confidence 998 99999998654 3599999999999998 567888767788899998763 3455553 556666565553
No 43
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.59 E-value=5.5e-15 Score=146.60 Aligned_cols=172 Identities=13% Similarity=0.052 Sum_probs=123.1
Q ss_pred ecCCCccchhhhHHHHH-HHHHHHcCCcEEEEEeCceeeecCCCChhHHHHHHHHHHHHHHHHHHHccCCCCCee-----
Q psy5948 54 TATTGRPHIAYFVPMSK-IADFLRAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKL----- 127 (549)
Q Consensus 54 i~PTG~lHIGn~~~~~~-l~~l~~~G~~v~ilIaD~~a~~~~~~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~k~----- 127 (549)
-.|||.|||||+++.+. ....++.|..+++.|.| + |+ .+.+..+.+.+ ...+.++|++++..
T Consensus 8 PsPtG~LHlG~~~~al~n~l~ar~~~G~~ilRieD----t-d~------~r~~~~~~~~i-~~dL~wlGl~~d~~~~~~g 75 (239)
T cd00808 8 PSPTGFLHIGGARTALFNYLFARKHGGKFILRIED----T-DQ------ERSVPEAEEAI-LEALKWLGLDWDEGPDVGG 75 (239)
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHcCCeEEEEECc----C-CC------CCCchHHHHHH-HHHHHHcCCCCCcCCccCC
Confidence 46899999999998642 22233568888888999 2 21 12344555554 46788999999963
Q ss_pred --EEEEccccccccccHHHHHHHHcccCHHHHHHhhHHHhhhccCCCcccchhhHHhhcccccccCcEEEecccchhhHH
Q psy5948 128 --KFVKGTDYQLSKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFGGVDQRKIFT 205 (549)
Q Consensus 128 --~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~k~~~~~~~~~~~~~~~~~~~YP~LqAaDil~~~~d~~~gG~DQ~~~~~ 205 (549)
.+|+||+-- +.+.+. .. ...+.+ -+..+|++.+++|...++++.++.|.||..+..
T Consensus 76 ~~~~~~QS~r~---~~y~~~------------~~---~L~~~g----dg~ptY~~a~~vDD~~~~ithViRG~D~~~~t~ 133 (239)
T cd00808 76 PYGPYRQSERL---EIYRKY------------AE---KLLEKG----DGFPTYHLANVVDDHLMGITHVIRGEEHLSSTP 133 (239)
T ss_pred CCCCEeeeCCH---HHHHHH------------HH---HHHHcC----CCCcccccHHHHhHHhcCCCEEEEChhhhhChH
Confidence 289999741 111111 01 111111 245699999999999999999999999999999
Q ss_pred HHHHhhhhcCCCceeEEecccccCCCCCCccCCCCCCeeecc----CCHHHHHHHHHh
Q psy5948 206 LAEKYLPQLGYAKRIHFMNPMVPGLAGGKMSSSEEDSKIDLL----DAPALVKKKLKK 259 (549)
Q Consensus 206 ~~r~l~~~~~~~~~~~l~~plL~~l~G~KMSKS~~~s~I~L~----Dsp~~i~kKI~~ 259 (549)
..+.+.+.+|..+|...+.|++++.+|.||||+.++.+|--. -+|+.|...+..
T Consensus 134 ~q~~l~~aLg~~~p~~~h~pll~~~~g~KLSKR~~~~~l~~lr~~G~~p~ai~~~l~~ 191 (239)
T cd00808 134 KQILLYEALGWEPPKFAHLPLILNPDGKKLSKRKGDTSISDYREEGYLPEALLNYLAL 191 (239)
T ss_pred HHHHHHHHcCCCCCceEeeccccCCCCCcccCCCCCccHHHHHHCCCCHHHHHHHHHH
Confidence 999999999998888889999999999999999986433221 256666666654
No 44
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.57 E-value=6.3e-14 Score=153.92 Aligned_cols=196 Identities=18% Similarity=0.236 Sum_probs=127.9
Q ss_pred CceEEEeecCCCccchhhhHHHH----HHHHHHHcCCcE-EEEEeCceeeecC---------------------CCChhH
Q psy5948 47 DLKIYWGTATTGRPHIAYFVPMS----KIADFLRAGCEV-TILFADLHAYLDN---------------------MKAPWE 100 (549)
Q Consensus 47 ~~~v~~Gi~PTG~lHIGn~~~~~----~l~~l~~~G~~v-~ilIaD~~a~~~~---------------------~~~~~~ 100 (549)
+..+-+|+.|||.+||||+..++ ..+.+...|+++ +++..|.|+.+.. ..+|..
T Consensus 24 ~~~~~~g~~psG~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~G~pl~~~p~p~G 103 (510)
T PRK00750 24 PVVVETGIGPSGLPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYLGKPLTEIPDPFG 103 (510)
T ss_pred cEEEEeCCCCCCCcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCcccccCCCCCchHHHHHhcCcccccCCCCCC
Confidence 47889999999999999987432 234444579988 7788899974221 123334
Q ss_pred HHHHHHHHHHHHHHHHHHccCCCCCeeEEEEccccccccccHHHHHHHHcccCHHHHHHhhHHHhhhccCCCcc------
Q psy5948 101 LLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLSKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLS------ 174 (549)
Q Consensus 101 ~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~k~~~~~~~~~~~~~~~~------ 174 (549)
+.+....++...+...|..+|++.+ ++.+++.+.+..|...+...... ...+...+.+........++.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~gi~~d---~~~~t~~y~~g~~~~~i~~~l~~--~~~i~~il~~~~~~~~~~~~~P~~pic 178 (510)
T PRK00750 104 CHESYAEHFNAPLREFLDRFGIEYE---FISATECYKSGRYDEAILTALEN--RDEIMEILLPYLGEERQATYSPFLPIC 178 (510)
T ss_pred CchHHHHHHHHHHHHHHHHcCCceE---EEehhhhhccCchHHHHHHHHHh--HHHHHHHHHHhcCCccCCCeeeeeeeC
Confidence 4566767777778889999999875 99999987666654333322221 111111111110000000111
Q ss_pred -------------------cchh----------hHHh-----------hcccccccCcEEEecccchh-hHHHHHHhhh-
Q psy5948 175 -------------------GLLY----------PGLQ-----------ALDEEYLKVDAQFGGVDQRK-IFTLAEKYLP- 212 (549)
Q Consensus 175 -------------------~~~Y----------P~Lq-----------AaDil~~~~d~~~gG~DQ~~-~~~~~r~l~~- 212 (549)
...| ++.. ++-|..+++|++++|.||.. +...++.+++
T Consensus 179 ~~cg~~~~~~~~~~d~~~~~v~y~~~cG~~~~~~~~~g~~KL~Wr~dW~~rW~~l~Vd~e~~GkDh~~~s~~~~~~i~~~ 258 (510)
T PRK00750 179 PKCGKVLTTPVISYDAEAGTVTYDCECGHEGEVPVTGGHGKLQWKVDWPMRWAALGVDFEPFGKDHASASYDTSKKIARE 258 (510)
T ss_pred CCCCccceEEEEEEeCCCCEEEEEcCCCCEEEEecCCCCcccCCCCCcHHHHHHcCCCEEeeCcccCcchHHHHHHHHHH
Confidence 1112 1111 01122278999999999999 9999999998
Q ss_pred hcCCCceeEEecccccCCCCCCccCCCCCCeeeccC
Q psy5948 213 QLGYAKRIHFMNPMVPGLAGGKMSSSEEDSKIDLLD 248 (549)
Q Consensus 213 ~~~~~~~~~l~~plL~~l~G~KMSKS~~~s~I~L~D 248 (549)
.++..+|+.+++.++...+|+|||||.|| .|.+.|
T Consensus 259 ilg~~~P~~~~y~~v~~~~G~KMSKSkGN-~i~~~d 293 (510)
T PRK00750 259 ILGGEPPEPFVYELFLDKKGEKISKSKGN-VITIED 293 (510)
T ss_pred HcCCCCCeeeeeeeEEeCCCCcccccCCC-ccCHHH
Confidence 88988999999999988889999999985 777655
No 45
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=99.48 E-value=1.6e-13 Score=143.56 Aligned_cols=197 Identities=19% Similarity=0.187 Sum_probs=123.5
Q ss_pred CCceEEEeecCCCccchhhhHHHH---HHHHHH-HcCCcE-EEEEeCceeeecC-------------------CCChhHH
Q psy5948 46 RDLKIYWGTATTGRPHIAYFVPMS---KIADFL-RAGCEV-TILFADLHAYLDN-------------------MKAPWEL 101 (549)
Q Consensus 46 ~~~~v~~Gi~PTG~lHIGn~~~~~---~l~~l~-~~G~~v-~ilIaD~~a~~~~-------------------~~~~~~~ 101 (549)
.+..|-||+.|||.+||||+...+ .+.+++ ..|+++ +++..|.|..+.. ..+|..+
T Consensus 19 ~~~~v~tgi~psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p~g~ 98 (353)
T cd00674 19 EKYVVASGISPSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDPFGC 98 (353)
T ss_pred CeEEEecCCCCCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhhcCC
Confidence 356788999999999999988432 244444 569988 7778899943211 1233343
Q ss_pred HHHHHHHHHHHHHHHHHccCCCCCeeEEEEccccccccccHHHHHHHHcccCHHHHHHhhHHHhhhccCCCcc-------
Q psy5948 102 LALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLSKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLS------- 174 (549)
Q Consensus 102 ~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~k~~~~~~~~~~~~~~~~------- 174 (549)
......++...+...|..+|++.+ ++.+++.+.+..|...+....... .+++..+.+........++.
T Consensus 99 ~~~~~d~~~~~f~~~l~~lgi~~d---~~~~T~~y~~g~~~~~i~~~L~~~--~~I~~i~~~~~~~~~~~~~~P~~p~c~ 173 (353)
T cd00674 99 CESYAEHFERPFEESLEKLGIEVE---FISQSQMYKSGLYDENILIALEKR--DEIMAILNEYRGRELQETWYPFMPYCE 173 (353)
T ss_pred CHHHHHHHHHHHHHHHHHcCCeee---eeecCCchhhchHHHHHHHHHHHC--ChHHHHHHHhcCCccCCCceeeeeecC
Confidence 445666666667788999999875 999999877766654433322211 11111111111000000111
Q ss_pred -----------------cchhhH----------H-----------hhcccccccCcEEEecccchhh---HHHHHHhhh-
Q psy5948 175 -----------------GLLYPG----------L-----------QALDEEYLKVDAQFGGVDQRKI---FTLAEKYLP- 212 (549)
Q Consensus 175 -----------------~~~YP~----------L-----------qAaDil~~~~d~~~gG~DQ~~~---~~~~r~l~~- 212 (549)
...|-+ . =++-|..+++|++++|.||..+ +..+..+++
T Consensus 174 ~cg~~~~~v~~~d~~~~~v~y~c~cG~~g~~~~~~g~~KL~Wr~dW~~rW~~l~Vd~E~~GkDh~~~ggs~~~~~~i~~~ 253 (353)
T cd00674 174 KCGKDTTTVEAYDAKAGTVTYKCECGHEETVDIRTGRGKLTWRVDWPMRWAILGVDFEPFGKDHASAGGSYDTGKEIARE 253 (353)
T ss_pred CcCcceeEEEEEeCCCCeEEEEcCCCCEEEEeecCCCcccCCCCCchhhhhhcCCCEEeeCccccccccHHHHHHHHHHH
Confidence 111110 0 0112233799999999999999 999999998
Q ss_pred hcCCCceeEEecccccCCCCCCccCCCCCCeeeccC
Q psy5948 213 QLGYAKRIHFMNPMVPGLAGGKMSSSEEDSKIDLLD 248 (549)
Q Consensus 213 ~~~~~~~~~l~~plL~~l~G~KMSKS~~~s~I~L~D 248 (549)
.++..+|..+.+.++..-.|+|||||.|+ .|.+.|
T Consensus 254 ilg~~~P~~~~ye~V~l~gg~KMSKSkGn-vI~~~d 288 (353)
T cd00674 254 IFGGEPPVPVMYEFIGLKGGGKMSSSKGN-VITPSD 288 (353)
T ss_pred HhCCCCCeEEEeeeEEeCCCCccCCCCCC-cCCHHH
Confidence 88988888888888764444699999985 666654
No 46
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.48 E-value=8.1e-14 Score=128.13 Aligned_cols=62 Identities=34% Similarity=0.318 Sum_probs=57.8
Q ss_pred hhHHhhcccccccC---cEEEecccchhhHHHHHHhhhhcCCC-ceeEEecccccCCCCCCccCCC
Q psy5948 178 YPGLQALDEEYLKV---DAQFGGVDQRKIFTLAEKYLPQLGYA-KRIHFMNPMVPGLAGGKMSSSE 239 (549)
Q Consensus 178 YP~LqAaDil~~~~---d~~~gG~DQ~~~~~~~r~l~~~~~~~-~~~~l~~plL~~l~G~KMSKS~ 239 (549)
|++.|++|++.+.. +++++|.||++|++.++.++++++.. +|..++.++|++.+|+|||||.
T Consensus 78 y~~~~~a~~~~~~~~~~~i~~~G~Dq~~h~~~~~~i~~~~~~~~~p~~~~~~~l~~~~g~KmSks~ 143 (143)
T cd00802 78 YMFLQAADFLLLYETECDIHLGGSDQLGHIELGLELLKKAGGPARPFGLTFGRVMGADGTKMSKSK 143 (143)
T ss_pred HHHHHHHHHHHHhhCCcEEEEechhHHHHHHHHHHHHHHhCCCCCceEEEeCCeECCCCCcCCCCC
Confidence 99999999999999 99999999999999999999998653 6889999999999999999994
No 47
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=99.48 E-value=8e-14 Score=144.50 Aligned_cols=204 Identities=19% Similarity=0.242 Sum_probs=103.4
Q ss_pred CCceEEEeecCCCccchhhhHHH----HHHHHHHHcCCcE-EEEEeCceeeecC--------------------CCChhH
Q psy5948 46 RDLKIYWGTATTGRPHIAYFVPM----SKIADFLRAGCEV-TILFADLHAYLDN--------------------MKAPWE 100 (549)
Q Consensus 46 ~~~~v~~Gi~PTG~lHIGn~~~~----~~l~~l~~~G~~v-~ilIaD~~a~~~~--------------------~~~~~~ 100 (549)
....+-+|+.|||.+||||+.-+ +..+.|.+.|.++ +|+.+|...-+.. .++|+.
T Consensus 23 ~~~v~~sG~sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~~~~~ylg~Plt~VPdP~G 102 (360)
T PF01921_consen 23 EPYVFASGISPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNPELEKYLGKPLTRVPDPFG 102 (360)
T ss_dssp SEEEEEEEE--SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC-CCCCTTSBTTTSB-TTS
T ss_pred ccEEEecCCCCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChHHHHHhcCCccccCCCCCC
Confidence 56789999999999999998732 3345566679888 7888886655432 246666
Q ss_pred HHHHHHHHHHHHHHHHHHccCCCCCeeEEEEccccccccccHHHHHHHHcccCHHHHHHhhHHHhhhccCCC--------
Q psy5948 101 LLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLSKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPL-------- 172 (549)
Q Consensus 101 ~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~k~~~~~~~~~~~~~~-------- 172 (549)
+..+..+++...+...|..+|+++ +++.|++.+.+..|...+.....+ +.+++..+.+........+
T Consensus 103 ~~~SyaeH~~~~~~~~L~~~gie~---e~~s~te~Y~sG~y~~~i~~aL~~--~~~I~~Il~~~~~~~~~~~y~Pf~piC 177 (360)
T PF01921_consen 103 CHESYAEHFNAPFEEFLDEFGIEY---EFISQTEMYRSGRYDEQIRTALEN--RDEIREILNEYRGRERPETYSPFLPIC 177 (360)
T ss_dssp SSSCHHHHHHHHHHHHHHTTT------EEEECCCCCCTTTTHHHHCHHHHT--HHHHHHHHHHHHHHT--TT--SEEEEE
T ss_pred CCccHHHHHHHHHHHHHHHcCCce---EEEeHHHhhhCCchHHHHHHHHHh--HHHHHHHHHHhcCcCCCCCeeeeeeec
Confidence 677888888888888899999977 599999997666554322222111 1222111111110000001
Q ss_pred -----------------cccchhhH-----------Hh-----------hcccccccCcEEEecccchh---hHHHHHHh
Q psy5948 173 -----------------LSGLLYPG-----------LQ-----------ALDEEYLKVDAQFGGVDQRK---IFTLAEKY 210 (549)
Q Consensus 173 -----------------~~~~~YP~-----------Lq-----------AaDil~~~~d~~~gG~DQ~~---~~~~~r~l 210 (549)
-+.+.|-+ .. ++-|..+++|+++.|+||.. ....+.+|
T Consensus 178 ~~cGri~tt~v~~~d~~~~~v~Y~c~~cG~~g~~~i~~g~gKL~WkvDW~mRW~~lgVdfEp~GKDH~~~GGS~d~~~~I 257 (360)
T PF01921_consen 178 EKCGRIDTTEVTEYDPEGGTVTYRCEECGHEGEVDITGGNGKLQWKVDWPMRWAALGVDFEPFGKDHASPGGSYDTSKRI 257 (360)
T ss_dssp TTTEE--EEEEEEE--SSSEEEEE--TTS---EEETTTT-EEE-HHHHHHHHHHHTT-SEEEEEHHHHCTTSHHHHHHHH
T ss_pred cccCCcccceeeEeecCCCEEEEEecCCCCEEEEecCCCcccccCCCcChhhhhhcCceeccCCCccCCCCCChhhHHHH
Confidence 11122222 00 11122279999999999877 88999999
Q ss_pred h-hhcCCCceeEEecccccCCCCCCccCCCCCCeeeccC-----CHHHHHH
Q psy5948 211 L-PQLGYAKRIHFMNPMVPGLAGGKMSSSEEDSKIDLLD-----APALVKK 255 (549)
Q Consensus 211 ~-~~~~~~~~~~l~~plL~~l~G~KMSKS~~~s~I~L~D-----sp~~i~k 255 (549)
+ +-+|.+||+.+..-++..-.|+|||||.|+ .|.+.| +|+.++=
T Consensus 258 ~~~i~g~~pP~~~~YE~~~~~g~~kmSsSkG~-~~t~~e~L~~~~PE~lr~ 307 (360)
T PF01921_consen 258 AREILGYEPPVPFPYEFFLDKGGGKMSSSKGN-GITPEEWLEYAPPESLRY 307 (360)
T ss_dssp HHHCC-----EEEEE--EEES---------------HHHHHTTS-HHHHHH
T ss_pred HHHHhCCCCCCCCCeeEEEeCCCcccccCCCC-ccCHHHHHHhcCHHHHHH
Confidence 9 667899999998888877777899999996 666665 5555543
No 48
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=99.43 E-value=7.5e-13 Score=130.49 Aligned_cols=151 Identities=17% Similarity=0.176 Sum_probs=113.2
Q ss_pred ecCCCccchhhhHHHHHHHHH--HHcCCcEEEEEeCceeeecCCCChhHHHHHHHHHHHHHHHHHHHccCCCCCeeEEEE
Q psy5948 54 TATTGRPHIAYFVPMSKIADF--LRAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVK 131 (549)
Q Consensus 54 i~PTG~lHIGn~~~~~~l~~l--~~~G~~v~ilIaD~~a~~~~~~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~ 131 (549)
=.|||.|||||++..+ +.++ .+.|.++++.|-|.- + .+.+.++.+.+ ...|.++|++++.- +++
T Consensus 8 PsPtG~lHlG~~r~al-~n~l~Ar~~~G~~iLRieDtD--------~---~R~~~~~~~~I-~~dL~wlGl~wd~~-~~~ 73 (230)
T cd00418 8 PSPTGYLHIGHARTAL-FNFAFARKYGGKFILRIEDTD--------P---ERSRPEYVESI-LEDLKWLGLDWDEG-PYR 73 (230)
T ss_pred CCCCCcccHHHHHHHH-HHHHHHHHcCCeEEEEeCcCC--------C---CCCChHHHHHH-HHHHHHcCCCCCCC-eee
Confidence 3689999999999864 2222 356889999999821 1 23445565554 46889999999832 788
Q ss_pred ccccccccccHHHHHHHHcccCHHHHHHhhHHHhhhccCCCcccchhhHHhhcccccccCcEEEecccchhhHHHHHHhh
Q psy5948 132 GTDYQLSKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYL 211 (549)
Q Consensus 132 qS~~~~~~~~~~~~~~l~~~~t~~~~k~~~~~~~~~~~~~~~~~~~YP~LqAaDil~~~~d~~~gG~DQ~~~~~~~r~l~ 211 (549)
||+-- ..|.. ......+.+ +..+|-+..++|...++++.++.|.|+..+......+.
T Consensus 74 QS~r~--~~y~~----------------~~~~L~~~g-----g~p~Y~la~vvDD~~~gIThViRG~D~l~st~~q~~l~ 130 (230)
T cd00418 74 QSDRF--DLYRA----------------YAEELIKKG-----GYPLYNFVHPVDDALMGITHVLRGEDHLDNTPIQDWLY 130 (230)
T ss_pred hhcCH--HHHHH----------------HHHHHHHcC-----CCccccccccccccccCCCEEEECHhhhhchHHHHHHH
Confidence 99861 11110 000111111 44589999999999999999999999999999999999
Q ss_pred hhcCCCceeEEecccccCCCCCCccCCCCC
Q psy5948 212 PQLGYAKRIHFMNPMVPGLAGGKMSSSEED 241 (549)
Q Consensus 212 ~~~~~~~~~~l~~plL~~l~G~KMSKS~~~ 241 (549)
+.+|..+|...+.|+|.+.+|+|||||.++
T Consensus 131 ~~Lg~~~P~~~H~pll~~~~g~KLSKr~~~ 160 (230)
T cd00418 131 EALGWEPPRFYHFPRLLLEDGTKLSKRKLN 160 (230)
T ss_pred HHcCCCCCeEEEeeeeeCCCCCCccCcCCC
Confidence 999998898899999999999999999875
No 49
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=2.1e-12 Score=137.50 Aligned_cols=193 Identities=20% Similarity=0.230 Sum_probs=127.1
Q ss_pred CCceEEEeecCCCccchhhhHH----HHHHHHHHHcCCcE-EEEEeCceeeecC---------------------CCChh
Q psy5948 46 RDLKIYWGTATTGRPHIAYFVP----MSKIADFLRAGCEV-TILFADLHAYLDN---------------------MKAPW 99 (549)
Q Consensus 46 ~~~~v~~Gi~PTG~lHIGn~~~----~~~l~~l~~~G~~v-~ilIaD~~a~~~~---------------------~~~~~ 99 (549)
+...+-||+.|||.+||||+.= .+..+.|.+.|+++ +|+++|.+.-+.. .++|+
T Consensus 19 ~~~~v~tGisPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP~ 98 (521)
T COG1384 19 DEYVVATGISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDPF 98 (521)
T ss_pred CcEEEecCcCCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHcCCccccCCCCc
Confidence 5678999999999999999872 23445566789988 9999998887653 23667
Q ss_pred HHHHHHHHHHHHHHHHHHHccCCCCCeeEEEEccccccccccHHHHHHHHcccCHHHHHHhhHHHhhhccCCCcccchhh
Q psy5948 100 ELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLSKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYP 179 (549)
Q Consensus 100 ~~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~k~~~~~~~~~~~~~~~~~~~YP 179 (549)
.++.....++...+...+..+|++++ ++.+|+.+....|.. ..+.+-. .+.+.+..+ ....+..+-+=.||
T Consensus 99 G~~~Sya~hf~~~f~~~l~~~Gi~~E---~~s~se~Yk~G~~~~-~i~~ale-~rdeI~~il----~~~~~~~~~e~~~P 169 (521)
T COG1384 99 GCCDSYAEHFLRPFEEFLDEFGIEVE---FVSATELYKSGLYDE-AIRIALE-RRDEIMEIL----NEYRGRELEEDWSP 169 (521)
T ss_pred cccchHHHHHHHHHHHHHHhcCCceE---EEEhHHhhhcccHHH-HHHHHHh-hHHHHHHHH----HHhcCCcccCCcee
Confidence 78889998888888888999999885 999999865554432 2221100 011111111 11101011111122
Q ss_pred HH---hhc----------------------------------------------ccccccCcEEEecccchh---hHHHH
Q psy5948 180 GL---QAL----------------------------------------------DEEYLKVDAQFGGVDQRK---IFTLA 207 (549)
Q Consensus 180 ~L---qAa----------------------------------------------Dil~~~~d~~~gG~DQ~~---~~~~~ 207 (549)
++ -.| =|..+++|++|.|+||.- -+..+
T Consensus 170 ~~piC~kcGri~~t~v~~~d~~~~v~Y~Ce~Gh~g~v~ir~g~~KL~WRvdWp~RW~~lgVd~EPfGKDH~a~ggSydtg 249 (521)
T COG1384 170 FMPICEKCGRILTTPVIEWDGEGTVEYRCECGHEGEVDIRGGEGKLPWRVDWPMRWAALGVDFEPFGKDHAAAGGSYDTG 249 (521)
T ss_pred ccccccccCCcceeEEEEecCCceEEEEecCCccceeeccccCcccccCcCccchhhccCcccccCCcccccccCchHHH
Confidence 11 111 122279999999999743 45677
Q ss_pred HHhhh-hcCCCceeEEecccccCCCCCCccCCCCCCeeeccC
Q psy5948 208 EKYLP-QLGYAKRIHFMNPMVPGLAGGKMSSSEEDSKIDLLD 248 (549)
Q Consensus 208 r~l~~-~~~~~~~~~l~~plL~~l~G~KMSKS~~~s~I~L~D 248 (549)
..+++ -+|++||..+..-+++.-.|+|||||.|+ .|.+.|
T Consensus 250 ~~I~~ei~g~~pP~~~~YE~i~lkg~~~mSsSkG~-~i~~~d 290 (521)
T COG1384 250 KRIAREIFGYEPPVPFVYEWILLKGGGKMSSSKGN-VISLSD 290 (521)
T ss_pred HHHHHHhcCCCCCCCCceEEEEecCCcccccCCCc-EEcHHH
Confidence 77887 56888988777666554446999999996 888876
No 50
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=99.34 E-value=5e-12 Score=138.39 Aligned_cols=196 Identities=17% Similarity=0.104 Sum_probs=118.9
Q ss_pred CCceEEEeecCCCccchhhhHHHH----HHHHHHHcCCcE-EEEEeCceeee---------------c----CCCChhHH
Q psy5948 46 RDLKIYWGTATTGRPHIAYFVPMS----KIADFLRAGCEV-TILFADLHAYL---------------D----NMKAPWEL 101 (549)
Q Consensus 46 ~~~~v~~Gi~PTG~lHIGn~~~~~----~l~~l~~~G~~v-~ilIaD~~a~~---------------~----~~~~~~~~ 101 (549)
++..+-||+.|||.+||||+...+ ..+.+...|+++ +|+.+|.|.-+ | ...+|+.+
T Consensus 18 ~~~~~~tg~~psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp~g~ 97 (515)
T TIGR00467 18 NLYTVASGITPSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDPEGC 97 (515)
T ss_pred CeEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCCCCC
Confidence 467899999999999999987432 234444679988 88889998322 2 23466666
Q ss_pred HHHHHHHHHHHHHHHHHccCCCCCeeEEEEccccccccccHHHHHHHHcccCHHHHHHhhHHHhhhccCC----------
Q psy5948 102 LALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLSKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHP---------- 171 (549)
Q Consensus 102 ~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~k~~~~~~~~~~~~~---------- 171 (549)
.+....++...+...|..+|++. +|+.+++.+.+..|-..+.....+ +.+++..+.+........
T Consensus 98 ~~s~~~h~~~~~~~~l~~~gi~~---e~~s~te~Y~sG~~~~~i~~~L~~--~~~I~~il~~~~~~~~~~~~~P~~pic~ 172 (515)
T TIGR00467 98 KTSYAEHFLIPFLESLPVLGINP---EFIRASKQYTSGLYASQIKIALDH--RKEISEILNEYRTSKLEENWYPISVFCE 172 (515)
T ss_pred cHHHHHHHHHHHHHHHHHcCCeE---EEEEHHHhhhcCChHHHHHHHHHh--HHHHHHHHHHhcCCccCCCceeeeeecC
Confidence 77888887777888999999975 699999997766654333322221 122222111111100000
Q ss_pred CcccchhhHHhhcc-----------------------------------cccccCcEEEecccchhhH---HHHHHhhh-
Q psy5948 172 LLSGLLYPGLQALD-----------------------------------EEYLKVDAQFGGVDQRKIF---TLAEKYLP- 212 (549)
Q Consensus 172 ~~~~~~YP~LqAaD-----------------------------------il~~~~d~~~gG~DQ~~~~---~~~r~l~~- 212 (549)
.+|..+.|+. .+| |..+++|++|.|.||...- ..+.+++.
T Consensus 173 ~cGrv~~~~~-~~~~~~~v~Y~c~cG~~g~~~~~~g~~KL~WkvdW~~RW~~lgV~~Ep~GkDH~~~ggsy~~~~~ia~~ 251 (515)
T TIGR00467 173 NCGRDTTTVN-NYDNEYSIEYSCECGNQESVDIYTGAIKLPWRVDWPARWKIEKVTFEPAGKDHAAAGGSYDTGVNIAKE 251 (515)
T ss_pred CcCccCceEE-EecCCceEEEEcCCCCEEEEeecCCCcccCCCCCcHhhHhhhCcccccCCCCccCccCCchhHHHHHHH
Confidence 1122222222 111 1117899999999976522 45555665
Q ss_pred hcCCCceeEEecccc-cCCCCCCccCCCCCCeeeccC
Q psy5948 213 QLGYAKRIHFMNPMV-PGLAGGKMSSSEEDSKIDLLD 248 (549)
Q Consensus 213 ~~~~~~~~~l~~plL-~~l~G~KMSKS~~~s~I~L~D 248 (549)
.++..+|..+..-++ ..-+|+|||||.|+ .|.+.|
T Consensus 252 ~l~~~~P~~~~ye~v~L~~~g~KMSKS~Gn-~itl~d 287 (515)
T TIGR00467 252 IFQYSPPVTVQYEWISLKGKGGKMSSSKGD-VISVKD 287 (515)
T ss_pred HhCCCCCcCcEEEEEEEcCCCccccCCCCC-CccHHH
Confidence 566666655544444 22346799999996 666643
No 51
>COG2517 Predicted RNA-binding protein containing a C-terminal EMAP domain [General function prediction only]
Probab=99.19 E-value=3.3e-11 Score=111.36 Aligned_cols=72 Identities=32% Similarity=0.511 Sum_probs=64.6
Q ss_pred ccccceeeeEEEEEecCCCCCceEEEEEEcCCCCCEEEEeCCccccccccCCCCEEEEEEeeccceecceecceeeecc
Q psy5948 370 PHRLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCNLKPAKMRGIESAGMVLCA 448 (549)
Q Consensus 370 ~~~~~i~vG~I~~v~~hp~adkL~v~~vd~G~~~~~~Ivsg~~~~~~~~~l~g~~v~v~~nlk~~k~~G~~SeGMllc~ 448 (549)
..-.+++||+|.+|-+||++|+||+|.||+|.- .++|||+...+. +|++|+| +-|+|+.+.|+.|+||+|.+
T Consensus 117 ~~aV~~vvGEV~Sv~~hp~aD~L~v~vvn~G~r-~~tVVTN~~~vr-----eg~~vaV-AlLPPr~F~gvvSeGMFlg~ 188 (219)
T COG2517 117 VIAVDIVVGEVMSVGKHPNADKLLVTVVNIGGR-AVTVVTNDLDVR-----EGDRVAV-ALLPPRNFFGVVSEGMFLGA 188 (219)
T ss_pred ceeEEEEeeeeeecccCCCCCceEEEEEecCCe-EEEEEecccccc-----cCCEEEE-EecChhHhccccccceeecc
Confidence 344789999999999999999999999999984 689999999998 8999877 56999999999999999444
No 52
>TIGR02306 RNA_lig_DRB0094 RNA ligase, DRB0094 family. The member of this family from Deinococcus radiodurans, a species that withstands and recovers from extensive radiation or dessication damage, is an apparent RNA ligase. It repairs RNA stand breaks in nicked DNA:RNA and RNA:RNA but not DNA:DNA duplexes. It has adenylyltransferase activity associated with the C-terminal domain. Related proteins also in this family are found in Streptomyces avermitilis MA-4680 and in bacteriophage 44RR2.8t. The phage example is unsurprising since one mechanism of host cell defense against phage is cleavage and inactivation of certain tRNA molecules. A fungal sequence from Neurospora crassa scores between trusted and noise cutofffs and may be similar in function.
Probab=99.06 E-value=3e-10 Score=118.00 Aligned_cols=67 Identities=21% Similarity=0.280 Sum_probs=60.1
Q ss_pred eeeeEEEEEecCCCCCceEEEEEEcCCCCCEEEEeCCccccccccCCCCEEEEE------E-------------------
Q psy5948 375 IRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVL------C------------------- 429 (549)
Q Consensus 375 i~vG~I~~v~~hp~adkL~v~~vd~G~~~~~~Ivsg~~~~~~~~~l~g~~v~v~------~------------------- 429 (549)
.+||+|+++++||+||+|.+|+||. .|||||+.|+. +|.+|+++ -
T Consensus 3 ~vv~kV~~i~php~Ad~L~v~~Vd~-----~~vV~ga~n~~-----~Gd~Vv~a~~gs~Lp~~~~~~~~~~~~~~~~~g~ 72 (341)
T TIGR02306 3 AVMREIADLQPHPNADALELATVGG-----WEVVVKKGEYR-----VGSDCVYFPEDSVLPTDAGLFRFLETRAKILDGK 72 (341)
T ss_pred eEEEEEEEeeecCCCCceEEEEEeC-----EEEEcCCCcCC-----CCCEEEEECCCCCCCCCCCcchhhcccccccccc
Confidence 4799999999999999999999997 89999999998 79999886 1
Q ss_pred ---eeccceecceecceeeecccccc
Q psy5948 430 ---NLKPAKMRGIESAGMVLCASVEE 452 (549)
Q Consensus 430 ---nlk~~k~~G~~SeGMllc~~~~~ 452 (549)
.|+.+++||+.|+||+ |+..+.
T Consensus 73 ~~~~Ik~~klRG~~SqGMl-cs~~~~ 97 (341)
T TIGR02306 73 MRARVKTVRLRGEISQGIA-LPTGAL 97 (341)
T ss_pred ccceEeEEEeccEEEccEE-echhhc
Confidence 6778899999999999 777654
No 53
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=99.00 E-value=7.8e-09 Score=110.81 Aligned_cols=268 Identities=15% Similarity=0.096 Sum_probs=150.1
Q ss_pred cCCCccchhhhHHHHH-HHHHHHcCCcEEEEEeCceeeecCCCChhHHHHHHHHHHHHHHHHHHHccCCCCCeeEEEEcc
Q psy5948 55 ATTGRPHIAYFVPMSK-IADFLRAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGT 133 (549)
Q Consensus 55 ~PTG~lHIGn~~~~~~-l~~l~~~G~~v~ilIaD~~a~~~~~~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS 133 (549)
.|||.|||||++..+. .....+.|.++++.|-|. ++ .+...++.+.+ ...|.++|++++ ..|+||
T Consensus 7 SPTG~LHiG~artAL~n~l~Ar~~gG~fiLRiEDT--------D~---~R~~~e~~~~I-~~~L~WlGl~wD--e~y~QS 72 (433)
T PRK12410 7 SPTGDMHIGNLRAAIFNYIVAKQQNEDFLIRIEDT--------DK---ERNIEGKDKEI-LEILNLFGISWD--KLVYQS 72 (433)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcC--------CC---CcCChHHHHHH-HHHHHHcCCCCC--CCeehh
Confidence 6999999999998532 222235699999999992 11 23445555554 468899999999 579999
Q ss_pred ccc-cccccHHHHHHHH---ccc-CHHHHHHh---------------------hHH----------Hhhhc---------
Q psy5948 134 DYQ-LSKEYTLDVYRLS---SVI-TEHDAKKA---------------------GAE----------VVKQV--------- 168 (549)
Q Consensus 134 ~~~-~~~~~~~~~~~l~---~~~-t~~~~k~~---------------------~~~----------~~~~~--------- 168 (549)
+-- .+.++...+..-+ .|+ |..+.+.. ..+ +++..
T Consensus 73 eR~~~Y~~~a~~Li~~G~AY~C~cs~eel~~~r~~~~~~g~~~~Y~g~cr~l~~~e~~~~g~~~~iR~k~p~~~~~f~D~ 152 (433)
T PRK12410 73 ENLKFHRQMAEKLLSEKKAFACFCSEEELEAKKEKAKNEKKPYRYDGTCENLEDDEVLNCNKPFVVRLKKPNHTMSFTDA 152 (433)
T ss_pred ccHHHHHHHHHHHHHcCCeeeecCCHHHHHHHHHHHhhcCCCCCCCchhhCCCHhHHHhcCCCeEEEEEcCCCceeeeec
Confidence 861 1112211111100 000 11110000 000 00000
Q ss_pred -------cCCCc---------ccchhhHHhhcccccccCcEEEecccchhhHHHHHHhhhhcCCCc-eeEEecccccCCC
Q psy5948 169 -------EHPLL---------SGLLYPGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYAK-RIHFMNPMVPGLA 231 (549)
Q Consensus 169 -------~~~~~---------~~~~YP~LqAaDil~~~~d~~~gG~DQ~~~~~~~r~l~~~~~~~~-~~~l~~plL~~l~ 231 (549)
....+ |.-+|-+.-+.|...+++++++.|.|+..+......+.+.+|..+ |...|.|++.+.+
T Consensus 153 v~G~i~~~~~~~~D~Vi~R~Dg~PtY~fA~vVDD~~mgIThViRG~d~l~~tp~Qi~Ly~aLg~~~pp~f~Hlpli~~~~ 232 (433)
T PRK12410 153 IKGEVSFEPDEIDSFVILRADKTPTYNFACAVDDMLYDISLIIRGEDHVSNTPKQILIREALGYNKEITYAHLPIILNEE 232 (433)
T ss_pred cceeEEeccccCCCeEEEcCCCCccccccchhchhhcCCCEEEechhhhhCcHHHHHHHHHcCCCCCCeEEEeeeeeCCC
Confidence 00011 223566777778888999999999999888888788889999975 4778999999999
Q ss_pred CCCccCCCCCCeeeccC------CHHHHHHHHHhccCCCCCCCcchhhchhhhheecccCCCcceeeeecccCCCCCCCC
Q psy5948 232 GGKMSSSEEDSKIDLLD------APALVKKKLKKAFCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFS 305 (549)
Q Consensus 232 G~KMSKS~~~s~I~L~D------sp~~i~kKI~~A~td~~~~~~~~v~~~~k~~lf~~~~~~~~~~i~~~~~~g~~~~~~ 305 (549)
|+||||+++. ..+.+ .|+.+...+...=..+. .+-....+++. . |.+++-.+.+.....+
T Consensus 233 g~KLSKR~~~--~~v~~~r~~G~~PeAi~n~l~~lG~~~~-~e~~~~~eli~-----~------F~~~~i~~~~~~~d~~ 298 (433)
T PRK12410 233 GKKMSKRDNA--SSVKWLLEQGFLPSAIANYLILLGNKTP-KEIFTLEEAIE-----W------FDIEKISKSPAKFDLK 298 (433)
T ss_pred CCeeecccCh--hhHHHHHHCCCCHHHHHHHHHHhCCCCc-ccccCHHHHHH-----h------CCHhhCCCccccCCHH
Confidence 9999999874 22322 56666666654321111 11112222222 1 2222222222223334
Q ss_pred CHHHHHHHHHcCCCChHHHHHHHH---HHHHHhcCchhhhhcc-hHHHHH
Q psy5948 306 DYQSLEQVFAKQELHPADLKAAAE---FYINRLLEPIRKKFES-KELKDL 351 (549)
Q Consensus 306 ~~eel~~~~~~g~l~~~dlK~~La---e~l~~~l~pir~~~~~-~e~~~~ 351 (549)
.+.-+..+|-. .+...++...+. +.+..++.-+|++... +|....
T Consensus 299 kL~~~N~~~i~-~~~~~~l~~~~~~~~~~~~~~~~l~~~r~~~l~d~~~~ 347 (433)
T PRK12410 299 KLRFINREHLK-MLDDERLSKLLGFKDKDLGGLAKLYLQEASTLNELKEK 347 (433)
T ss_pred HHHHHHHHHHH-hCCHHHHHHHHhhhhHHHHHHHHHHHHhcCcHHHHHHH
Confidence 55556666655 466666665541 2345555556666553 344433
No 54
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=99.00 E-value=6.7e-09 Score=113.09 Aligned_cols=196 Identities=14% Similarity=0.091 Sum_probs=119.6
Q ss_pred eEEEeecCC--CccchhhhHHHHH-HHHHHHcCCcEEEEEeCceeeecCCCChhHHHHHHHHHHHHHHHHHHHccCCCCC
Q psy5948 49 KIYWGTATT--GRPHIAYFVPMSK-IADFLRAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPIS 125 (549)
Q Consensus 49 ~v~~Gi~PT--G~lHIGn~~~~~~-l~~l~~~G~~v~ilIaD~~a~~~~~~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~ 125 (549)
.|.+-|.|| |.|||||.+..+. .....+.|.++++.|-|. +..+...++.+.++ ..|.++|++++
T Consensus 4 ~vrtRFAPSPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIEDT-----------D~~R~~~~~~~~i~-~~L~WLGl~wD 71 (513)
T PRK14895 4 NVITRFAPSPTGFLHIGSARTALFNYLFARHHNGKFLLRIEDT-----------DKERSTKEAVEAIF-SGLKWLGLDWN 71 (513)
T ss_pred CeeEeeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCC-----------CccccChHHHHHHH-HHHHHcCCCCC
Confidence 355667666 9999999998643 222235799999999992 11344556666544 67899999997
Q ss_pred eeEEEEcccc-ccccccHHHHHHHH---ccc-CHHHHHHh-------------------hH-H----------Hhhh--c
Q psy5948 126 KLKFVKGTDY-QLSKEYTLDVYRLS---SVI-TEHDAKKA-------------------GA-E----------VVKQ--V 168 (549)
Q Consensus 126 k~~i~~qS~~-~~~~~~~~~~~~l~---~~~-t~~~~k~~-------------------~~-~----------~~~~--~ 168 (549)
. ..|+||+- ..+.++...+..-+ .|+ |..++... .. + +++. .
T Consensus 72 e-~py~QSeR~~~Y~~~a~~Li~~G~AY~CfCt~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~~~~~~~~iR~k~p~~ 150 (513)
T PRK14895 72 G-EVIFQSKRNNLYKEAALKLLQNGKAYYCFTRQEEIERQRQQALENKQHFIFNSEWRDKDPSIYPTDIKPVIRLKTPRE 150 (513)
T ss_pred C-CceeEeCcHHHHHHHHHHHHHcCCeEEecCcHHHHHHHHHhhhccCCCCCCChhhcccChhhhhcCCCeeEEEEcCCC
Confidence 3 37899986 11122221111100 010 11111000 00 0 0000 0
Q ss_pred ---------------cCCC---------cccchhhHHhhcccccccCcEEEecccchhhHHHHHHhhhhcCCCceeEEec
Q psy5948 169 ---------------EHPL---------LSGLLYPGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMN 224 (549)
Q Consensus 169 ---------------~~~~---------~~~~~YP~LqAaDil~~~~d~~~gG~DQ~~~~~~~r~l~~~~~~~~~~~l~~ 224 (549)
.... =|.-+|-+--+.|-...+++.++.|.||..|...-..+.+.+|..+|...|.
T Consensus 151 ~~~~~~D~v~G~~~~~~~~~~D~Vi~RsDG~ptY~~a~vVDD~~m~ithVIRG~d~~~~t~~q~~l~~aLG~~~p~~~H~ 230 (513)
T PRK14895 151 GSITIHDTLQGEVVIENSHIDDMVLLRADGTATYMLAVVVDDHDMGITHIIRGDDHLTNAARQLAIYQAFGYAVPSMTHI 230 (513)
T ss_pred CceEEEeecccceecccccCCCcEEEEeCCCcchhhHHHHHHHhcCCCEEEECchHhhhHHHHHHHHHHcCCCCCeEEEE
Confidence 0000 0112444555556666799999999999999988888999999888888899
Q ss_pred ccccCCCCCCccCCCCCCeeeccC------CHHHHHHHHHh
Q psy5948 225 PMVPGLAGGKMSSSEEDSKIDLLD------APALVKKKLKK 259 (549)
Q Consensus 225 plL~~l~G~KMSKS~~~s~I~L~D------sp~~i~kKI~~ 259 (549)
|+|.+.+|+||||+.+.. .+.+ .|+.+...+..
T Consensus 231 plv~~~~g~KLSKR~g~~--~i~~~r~~G~~Peai~n~la~ 269 (513)
T PRK14895 231 PLIHGADGAKLSKRHGAL--GIEAYKDMGYLPESLCNYLLR 269 (513)
T ss_pred EeEEcCCCCccccccCch--hHHHHHHCCCCHHHHHHHHHH
Confidence 999999999999998853 3322 55666665553
No 55
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=98.99 E-value=2e-09 Score=110.19 Aligned_cols=175 Identities=14% Similarity=0.067 Sum_probs=112.7
Q ss_pred ecCCCccchhhhHHHHH-HHHHHHcCCcEEEEEeCceeeecCCCChhHHHHHHHHHHHHHHHHHHHccCCCCCeeEEEEc
Q psy5948 54 TATTGRPHIAYFVPMSK-IADFLRAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKG 132 (549)
Q Consensus 54 i~PTG~lHIGn~~~~~~-l~~l~~~G~~v~ilIaD~~a~~~~~~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~q 132 (549)
=.|||.|||||++..+. .....+.|.++++.|-|. | + .+...++.+.+ ...|.++|++++.- .++|
T Consensus 12 PSPTG~LHlG~~rtAL~n~l~Ar~~~G~~iLRiEDt-----D---~---~R~~~~~~~~I-~~dL~wlGl~wDe~-~~~Q 78 (299)
T PRK05710 12 PSPSGPLHFGSLVAALGSWLDARAHGGRWLLRIEDI-----D---P---PREVPGAADAI-LADLEWLGLHWDGP-VLYQ 78 (299)
T ss_pred cCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEECcC-----C---C---CccchHHHHHH-HHHHHHCCCCCCCC-ceEe
Confidence 36889999999998642 222235688999999982 1 1 23445555554 46889999999842 6779
Q ss_pred cccc-cccccHHHHHHHH---ccc-CHHHHHHh-----------------h--------HHHhhhc--------------
Q psy5948 133 TDYQ-LSKEYTLDVYRLS---SVI-TEHDAKKA-----------------G--------AEVVKQV-------------- 168 (549)
Q Consensus 133 S~~~-~~~~~~~~~~~l~---~~~-t~~~~k~~-----------------~--------~~~~~~~-------------- 168 (549)
|+-- ...++...+...+ .|+ |..++++. . ..+++..
T Consensus 79 S~r~~~Y~~~~~~L~~~G~aY~C~Ctr~el~~~~~~~~~~~~~y~g~cr~~~~~~~~~~~iRlk~~~~~~~~~D~~~G~~ 158 (299)
T PRK05710 79 SQRHDAYRAALDRLRAQGLVYPCFCSRKEIAAAAPAPPDGGGIYPGTCRDLLHGPRNPPAWRLRVPDAVIAFDDRLQGRQ 158 (299)
T ss_pred eccHHHHHHHHHHHHHCCCceecCCCHHHHHHHhhhccCCCCcCCCccccCCccccCCceEEEEcCCCceEEEEecceeE
Confidence 9861 1111111111100 010 11111100 0 0000000
Q ss_pred -cCC--Cc---------ccchhhHHhhcccccccCcEEEecccchhhHHHHHHhhhhcCCCceeEEecccccCCCCCCcc
Q psy5948 169 -EHP--LL---------SGLLYPGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGGKMS 236 (549)
Q Consensus 169 -~~~--~~---------~~~~YP~LqAaDil~~~~d~~~gG~DQ~~~~~~~r~l~~~~~~~~~~~l~~plL~~l~G~KMS 236 (549)
... .+ +..+|-+--+.|....+++.++.|.|...+......+.+.+|..+|...|.|+|.+.+|.|||
T Consensus 159 ~~~~~~~~~D~Vi~R~dg~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~aLg~~~P~y~H~pll~~~~g~kLS 238 (299)
T PRK05710 159 HQDLALAVGDFVLRRADGLFAYQLAVVVDDALQGVTHVVRGADLLDSTPRQIYLQQLLGLPTPRYLHLPLVLNADGQKLS 238 (299)
T ss_pred eeCCCCCCCCEEEEecCCCccccchhHHhcccCCCCEEEeChhhhhcCHHHHHHHHHcCCCCCeEEEeecccCCCCCccc
Confidence 000 01 335788888888888999999999999888888888899999999988999999999999999
Q ss_pred CCCCC
Q psy5948 237 SSEED 241 (549)
Q Consensus 237 KS~~~ 241 (549)
|+.+.
T Consensus 239 Kr~~~ 243 (299)
T PRK05710 239 KQNGA 243 (299)
T ss_pred ccCCc
Confidence 99874
No 56
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=98.94 E-value=2.3e-08 Score=109.13 Aligned_cols=190 Identities=15% Similarity=0.104 Sum_probs=117.3
Q ss_pred cCCCccchhhhHHHHH-HHHHHHcCCcEEEEEeCceeeecCCCChhHHHHHHHHHHHHHHHHHHHccCCCCCeeEEEEcc
Q psy5948 55 ATTGRPHIAYFVPMSK-IADFLRAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGT 133 (549)
Q Consensus 55 ~PTG~lHIGn~~~~~~-l~~l~~~G~~v~ilIaD~~a~~~~~~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS 133 (549)
.|||.|||||+...+. .....+.|.++++.|-|. | + .+...++.+.+ ...|.++|++++. ..|+||
T Consensus 9 sPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDt-----D---~---~R~~~~~~~~i-~~~L~wlGl~~de-~~~~QS 75 (470)
T TIGR00464 9 SPTGYLHIGGARTALFNYLFAKHTGGEFILRIEDT-----D---L---ERNIEEAEEAI-LEGLKWLGISWDE-GPYYQS 75 (470)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcC-----C---C---ccCChHHHHHH-HHHHHHCCCCCCC-Ceeehh
Confidence 6899999999998642 221225789999999982 1 1 23445666654 4688999999984 378899
Q ss_pred cc-ccccccHHHHHH-------------H-------------------HcccCHHHHHHhhHH------Hhhhcc-C---
Q psy5948 134 DY-QLSKEYTLDVYR-------------L-------------------SSVITEHDAKKAGAE------VVKQVE-H--- 170 (549)
Q Consensus 134 ~~-~~~~~~~~~~~~-------------l-------------------~~~~t~~~~k~~~~~------~~~~~~-~--- 170 (549)
+- ..+.++...+.. + ++..+..+.++.... +++... +
T Consensus 76 ~r~~~y~~~~~~L~~~g~aY~C~ct~~~l~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~~~g~~~~iR~k~~~~~~~~ 155 (470)
T TIGR00464 76 QRLDIYKKYAKELLEEGLAYRCYCSKERLERLREEQKANKETPRYDGRCRNLHEEEIENKLAKGIPPVVRFKIPQEAVVS 155 (470)
T ss_pred CCHHHHHHHHHHHHHcCCEEecCCChHHHHHHHHHHhhCCCCCCCCCCcccCCHHHHHhHHhcCCCceEEEEcCCCCcee
Confidence 86 111122111111 0 001111111100000 000000 0
Q ss_pred -------------CC---------cccchhhHHhhcccccccCcEEEecccchhhHHHHHHhhhhcCCCceeEEeccccc
Q psy5948 171 -------------PL---------LSGLLYPGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVP 228 (549)
Q Consensus 171 -------------~~---------~~~~~YP~LqAaDil~~~~d~~~gG~DQ~~~~~~~r~l~~~~~~~~~~~l~~plL~ 228 (549)
.. =|.-+|-+--+.|-...+++.++.|.||..+...-..+.+.+|..+|...|.|++.
T Consensus 156 ~~D~~~G~~~~~~~~~~D~Vl~RsdG~ptY~~A~~vdD~~~~ithvIrG~d~~~~t~~~~~l~~aLg~~~p~~~H~p~l~ 235 (470)
T TIGR00464 156 FNDQVRGEITFQNSELDDFVILRSDGSPTYNFAVVVDDYLMKITHVIRGEDHISNTPKQILIYQALGWKIPVFAHLPMIL 235 (470)
T ss_pred EEecccceEEecCccCCCeEEEecCCCcccccHHHHHHHhCCCCEEEECchhhcCHHHHHHHHHHcCCCCCeEEEEeeee
Confidence 00 02234555555666667999999999999999888888999998888888999999
Q ss_pred CCCCCCccCCCCCCeeeccC------CHHHHHHHHHh
Q psy5948 229 GLAGGKMSSSEEDSKIDLLD------APALVKKKLKK 259 (549)
Q Consensus 229 ~l~G~KMSKS~~~s~I~L~D------sp~~i~kKI~~ 259 (549)
+++|+||||..+ .+.+.+ .|+.+...+..
T Consensus 236 ~~~g~kLSKR~g--~~~l~~l~~~g~~p~a~~~~~~~ 270 (470)
T TIGR00464 236 DEDGKKLSKRDG--ATSIMQFKEQGYLPEALINYLAL 270 (470)
T ss_pred cCCCccccccCC--CccHHHHHHCCCCHHHHHHHHHH
Confidence 999999999987 355543 56666665544
No 57
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=98.89 E-value=1.4e-08 Score=102.81 Aligned_cols=177 Identities=15% Similarity=0.092 Sum_probs=111.1
Q ss_pred cCCCccchhhhHHHHH-HHHHHHcCCcEEEEEeCceeeecCCCChhHHHHHHHHHHHHHHHHHHHccCCCCCeeEEEEcc
Q psy5948 55 ATTGRPHIAYFVPMSK-IADFLRAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGT 133 (549)
Q Consensus 55 ~PTG~lHIGn~~~~~~-l~~l~~~G~~v~ilIaD~~a~~~~~~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS 133 (549)
.|||.|||||+...+. .....+.|.++++.|-|.- + .+.+.++.+.+ ...|.++|++++.- .++||
T Consensus 8 SPtG~lHiG~~rtAL~n~l~Ar~~gG~~iLRiEDtD--------~---~R~~~~~~~~I-~~dL~wLGl~wDe~-~~~QS 74 (272)
T TIGR03838 8 SPSGPLHFGSLVAALGSYLDARAHGGRWLVRIEDLD--------P---PREVPGAADDI-LRTLEAYGLHWDGE-VVYQS 74 (272)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCcCC--------C---CCCChHHHHHH-HHHHHHcCCCCCCC-eeeee
Confidence 6899999999998642 2222356899999999821 1 23445555554 46889999999843 57899
Q ss_pred ccc-cccccHHHHHHHHc---cc-CHHHHHHh-------------h----------HHHhhhcc----------------
Q psy5948 134 DYQ-LSKEYTLDVYRLSS---VI-TEHDAKKA-------------G----------AEVVKQVE---------------- 169 (549)
Q Consensus 134 ~~~-~~~~~~~~~~~l~~---~~-t~~~~k~~-------------~----------~~~~~~~~---------------- 169 (549)
+-- ...++...+..-+. |+ |..+.+.. . ..+++...
T Consensus 75 ~r~~~Y~~~~~~L~~~G~aY~C~Ct~eel~~~~~~~~~~y~~~cr~~~~~~~~~~~~~Rlk~~~~~~~~~D~~~g~~~~~ 154 (272)
T TIGR03838 75 QRHALYQAALDRLLAAGLAYPCQCTRKEIAAAAGDGGGIYPGTCRNGLLGRPARPAAWRLRVPDGVIAFDDRLQGPQQQD 154 (272)
T ss_pred CCHHHHHHHHHHHHHcCCEEecCCCHHHHHHHhcCCCCCCCchhhcccccccCCCceEEEecCCCCceEEEeeeeEEEec
Confidence 861 11122111111000 00 11111000 0 00000000
Q ss_pred -CCCc---------ccchhhHHhhcccccccCcEEEecccchhhHHHHHHhhhhcCCCceeEEecccccCCCCCCccCCC
Q psy5948 170 -HPLL---------SGLLYPGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGGKMSSSE 239 (549)
Q Consensus 170 -~~~~---------~~~~YP~LqAaDil~~~~d~~~gG~DQ~~~~~~~r~l~~~~~~~~~~~l~~plL~~l~G~KMSKS~ 239 (549)
...+ |..+|-+.-+.|-..++++.++.|.|+..+......+.+.+|..+|...+.|+|.+.+|.|+||+.
T Consensus 155 ~~~~~~D~vi~R~Dg~ptY~fA~vVDD~~~gIThViRG~D~l~~t~~q~~l~~aLg~~~P~y~H~pll~~~~g~kLSKR~ 234 (272)
T TIGR03838 155 LAAAVGDFVLRRADGLFAYQLAVVVDDAAQGITHVVRGADLLDSTPRQIYLQRLLGLPPPRYLHLPLVVNADGEKLSKQN 234 (272)
T ss_pred CcccCCCEEEEecCCCccccChhhhhcccCCCCEEEeCHhhhhccHHHHHHHHHhCCCCCeEEechhhhCCCCCeeeccC
Confidence 0001 123566666778888999999999999888888888899999988888899999999999999998
Q ss_pred CCCee
Q psy5948 240 EDSKI 244 (549)
Q Consensus 240 ~~s~I 244 (549)
+...|
T Consensus 235 ~~~~i 239 (272)
T TIGR03838 235 GAPAL 239 (272)
T ss_pred Cccch
Confidence 75333
No 58
>PLN02627 glutamyl-tRNA synthetase
Probab=98.89 E-value=2.9e-08 Score=108.39 Aligned_cols=199 Identities=10% Similarity=0.054 Sum_probs=124.0
Q ss_pred CceEEEeecCCCccchhhhHHHHH-HHHHHHcCCcEEEEEeCceeeecCCCChhHHHHHHHHHHHHHHHHHHHccCCCCC
Q psy5948 47 DLKIYWGTATTGRPHIAYFVPMSK-IADFLRAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPIS 125 (549)
Q Consensus 47 ~~~v~~Gi~PTG~lHIGn~~~~~~-l~~l~~~G~~v~ilIaD~~a~~~~~~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~ 125 (549)
+.++=..=.|||.|||||++..+. .....++|.++++.|-|. ++ .+...++.+.+ ...|.++|++++
T Consensus 45 ~vr~RFAPSPTG~LHiG~aRtAL~n~l~Ar~~gG~fiLRIEDT--------D~---~R~~~e~~~~I-~~~L~WLGl~wD 112 (535)
T PLN02627 45 PVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDT--------DL---ARSTKESEEAV-LRDLKWLGLDWD 112 (535)
T ss_pred ceEEEeCCCCCCCccHHHHHHHHHHHHHHHHhCCEEEEEeCcC--------CC---CCCChHHHHHH-HHHHHHcCCCCC
Confidence 344444447889999999997532 222236799999999981 11 23455666654 468899999998
Q ss_pred ee-------EEEEccccc-cccccHHHHHH-------------H-------------------HcccCHHHHHHhhHH--
Q psy5948 126 KL-------KFVKGTDYQ-LSKEYTLDVYR-------------L-------------------SSVITEHDAKKAGAE-- 163 (549)
Q Consensus 126 k~-------~i~~qS~~~-~~~~~~~~~~~-------------l-------------------~~~~t~~~~k~~~~~-- 163 (549)
.- --|+||+-- .+.++...+.. + ++..+..+.......
T Consensus 113 egp~~gg~~gpy~QSeR~~~Y~~~a~~Li~~G~AY~CfCs~eel~~~r~~~~~~~~~~~Yd~~cr~l~~ee~~~~~~~g~ 192 (535)
T PLN02627 113 EGPDVGGEYGPYRQSERNAIYKQYAEKLLESGHVYPCFCTDEELEAMKEEAELKKLPPRYTGKWATASDEEVQAELAKGT 192 (535)
T ss_pred cCcccCCCCCCeeeeccHHHHHHHHHHHHHcCCeeeccCChHHHHHHHHHHHhcCCCcCCCCccccCCHHHHHHHHhCCC
Confidence 53 248899861 11222111111 0 011111111000000
Q ss_pred ----Hhh--hcc---------------CCC---------cccchhhHHhhcccccccCcEEEecccchhhHHHHHHhhhh
Q psy5948 164 ----VVK--QVE---------------HPL---------LSGLLYPGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQ 213 (549)
Q Consensus 164 ----~~~--~~~---------------~~~---------~~~~~YP~LqAaDil~~~~d~~~gG~DQ~~~~~~~r~l~~~ 213 (549)
+.+ ..+ ... -|--+|-+.-+.|...+++++++.|.|+..+......+.+.
T Consensus 193 ~~~iR~k~p~~~~~~~~D~i~G~i~~~~~~~~D~Vi~R~DG~PtY~fA~vVDD~~mgITHViRG~D~l~nTpkQi~ly~a 272 (535)
T PLN02627 193 PYTYRFRVPKEGSVKIDDLIRGEVSWNTDTLGDFVLLRSNGQPVYNFCVAVDDATMGITHVIRAEEHLPNTLRQALIYKA 272 (535)
T ss_pred CceEEEEcCCCCceEEEeeeeeeeeeccccCCCeEEEecCCCccccccceecccccCCcEEEechhhhcChHHHHHHHHH
Confidence 000 000 000 01236777777888889999999999998888888888899
Q ss_pred cCCCceeEEecccccCCCCCCccCCCCCCeeeccC------CHHHHHHHHHh
Q psy5948 214 LGYAKRIHFMNPMVPGLAGGKMSSSEEDSKIDLLD------APALVKKKLKK 259 (549)
Q Consensus 214 ~~~~~~~~l~~plL~~l~G~KMSKS~~~s~I~L~D------sp~~i~kKI~~ 259 (549)
+|..+|...|.|+|.+.+|+||||+++. +.+.+ .|+.+...+..
T Consensus 273 Lg~~~P~f~Hlpli~~~~g~KLSKR~~~--~~v~~~r~~G~~PeAi~nyla~ 322 (535)
T PLN02627 273 LGFPMPRFAHVSLILAPDRSKLSKRHGA--TSVGQFREMGYLPDAMVNYLAL 322 (535)
T ss_pred cCCCCCeEEEccceeCCCCCccccccCC--ccHHHHHHCCCCHHHHHHHHHH
Confidence 9999998899999999999999999874 33332 66777766654
No 59
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=98.89 E-value=5.6e-09 Score=103.32 Aligned_cols=160 Identities=12% Similarity=0.053 Sum_probs=105.5
Q ss_pred ecCCCccchhhhHHHHHHHHHH--HcCCcEEEEEeCceeeecCCCChhHHHHHHHHHHHHHHHHHHHccCCCCCeeEEEE
Q psy5948 54 TATTGRPHIAYFVPMSKIADFL--RAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVK 131 (549)
Q Consensus 54 i~PTG~lHIGn~~~~~~l~~l~--~~G~~v~ilIaD~~a~~~~~~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~ 131 (549)
=.|||.|||||++..+ +.++. +.|.+.++.|-|. ++ .+.+.++.+.+ ...|.++|++++ .+++
T Consensus 8 PsPtG~lHlG~~~~al-~~~l~Ar~~~G~~iLRieDt--------D~---~R~~~~~~~~I-~~dL~wlGl~wD--~~~~ 72 (238)
T cd00807 8 PEPNGYLHIGHAKAIL-LNFGYAKKYGGRCNLRFDDT--------NP---EKEEEEYVDSI-KEDVKWLGIKPY--KVTY 72 (238)
T ss_pred CCCCCcccHHHHHHHH-HHHHHHHHhCCEEEEEecCC--------CC---cccchHHHHHH-HHHHHHcCCCCC--Ccee
Confidence 3689999999999864 22332 5688999999882 11 23455555554 468899999999 6889
Q ss_pred cccc-ccccccHHHHHHHHcccCHHHHHHhhHHHhhhccCCCc-ccchhhHHhhcccccccCcEEEecccchhhHHHHHH
Q psy5948 132 GTDY-QLSKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLL-SGLLYPGLQALDEEYLKVDAQFGGVDQRKIFTLAEK 209 (549)
Q Consensus 132 qS~~-~~~~~~~~~~~~l~~~~t~~~~k~~~~~~~~~~~~~~~-~~~~YP~LqAaDil~~~~d~~~gG~DQ~~~~~~~r~ 209 (549)
||+- ....++...+..-+.... . .+ .+..+ .-.+|-+.-++|....+++.++.|.|...+...-..
T Consensus 73 QS~r~~~Y~~~~~~L~~~g~aY~-----~-----~~--~~~~~~i~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~ 140 (238)
T cd00807 73 ASDYFDQLYEYAEQLIKKGKAYV-----H-----HR--TGDKWCIYPTYDFAHPIVDSIEGITHSLCTLEFEDRRPSYYW 140 (238)
T ss_pred cccCHHHHHHHHHHHHHcCCeec-----C-----CC--CCCCEEEEeccccceEeeccccCCCeEEechhhhcCCHHHHH
Confidence 9986 111111122222121111 0 00 01111 125788888999999999999999998888887788
Q ss_pred hhhhcCCCceeEEecccccCCCCCCccCCCCC
Q psy5948 210 YLPQLGYAKRIHFMNPMVPGLAGGKMSSSEED 241 (549)
Q Consensus 210 l~~~~~~~~~~~l~~plL~~l~G~KMSKS~~~ 241 (549)
+.+.+|..+|..+....+ +.+|.||||+...
T Consensus 141 l~~aLg~~~P~~~~~~hl-n~~g~kLSKR~~~ 171 (238)
T cd00807 141 LCDALRLYRPHQWEFSRL-NLTYTVMSKRKLL 171 (238)
T ss_pred HHHHcCCCCCceeEEEEE-CCCCCCccCcCch
Confidence 889999877743322223 7889999999863
No 60
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=98.87 E-value=4.6e-09 Score=104.24 Aligned_cols=165 Identities=16% Similarity=0.126 Sum_probs=109.0
Q ss_pred EEeecCCCccchhhhHHHHHHHHHH--HcCCcEEEEEeCceeeecCCCChhHHHHHHHHHHHHHHHHHHHccCCCCCeeE
Q psy5948 51 YWGTATTGRPHIAYFVPMSKIADFL--RAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLK 128 (549)
Q Consensus 51 ~~Gi~PTG~lHIGn~~~~~~l~~l~--~~G~~v~ilIaD~~a~~~~~~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~k~~ 128 (549)
=+|-.|||.+||||++..+. .++. +.|..+++-|-|.-. +- ...+..+.+. +...+.++|++++ .
T Consensus 5 RfaPsPtG~lHiG~~rtal~-~~l~Ar~~~G~~ilRieDtD~-----~r----~~~~~~~~~~-i~~dL~wLGl~~d--~ 71 (240)
T cd09287 5 RFAPNPNGPLHLGHARAAIL-NGEYAKMYGGKFILRFDDTDP-----RT----KRPDPEAYDM-IPEDLEWLGVKWD--E 71 (240)
T ss_pred eCCCCCCCCccHHHHHHHHH-HHHHHHHcCCEEEEeeCcCCC-----Cc----ccchHHHHHH-HHHHHHHcCCCCC--C
Confidence 45778999999999998642 2222 457788888888321 11 0033344443 3468889999998 6
Q ss_pred EEEccccc-cccccHHHHHHHHcccCHHHHHHhhHHHhhhccCCCcccchhhHHhhcccccccCcEEEecccchhhHHHH
Q psy5948 129 FVKGTDYQ-LSKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFGGVDQRKIFTLA 207 (549)
Q Consensus 129 i~~qS~~~-~~~~~~~~~~~l~~~~t~~~~k~~~~~~~~~~~~~~~~~~~YP~LqAaDil~~~~d~~~gG~DQ~~~~~~~ 207 (549)
.++||+.- ...++...+..-+.... . . ...+.-+.-.+|-+..+.|-...+++.++.|.|...+....
T Consensus 72 ~~~qS~r~~~y~~~~~~Li~~G~aY~-----~-----~-~~~~~~~i~ptY~la~vVDD~~~gIThViRg~d~~~~t~~q 140 (240)
T cd09287 72 VVIASDRIELYYEYARKLIEMGGAYV-----H-----P-RTGSKYRVWPTLNFAVAVDDHLLGVTHVLRGKDHIDNTEKQ 140 (240)
T ss_pred ccchhccHHHHHHHHHHHHHcCCccc-----C-----c-ccCCcEEEEEccccceeeeccccCCCeEEechhhhhCCHHH
Confidence 78899861 11111111211111111 0 0 00111111257888888999999999999999998888888
Q ss_pred HHhhhhcCCCceeEEecccccCCCCCCccCCCC
Q psy5948 208 EKYLPQLGYAKRIHFMNPMVPGLAGGKMSSSEE 240 (549)
Q Consensus 208 r~l~~~~~~~~~~~l~~plL~~l~G~KMSKS~~ 240 (549)
..+.+.++..+|...+.|+|.. +|.||||+..
T Consensus 141 ~~l~~~Lg~~~P~~~H~pll~~-~~~kLSKR~~ 172 (240)
T cd09287 141 RYIYEYFGWEYPETIHWGRLKI-EGGKLSTSKI 172 (240)
T ss_pred HHHHHHcCCCCCcEEeeeeecC-CCCeeccccc
Confidence 8888999988888789999975 5899999974
No 61
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=98.86 E-value=6e-08 Score=105.99 Aligned_cols=81 Identities=16% Similarity=0.196 Sum_probs=61.8
Q ss_pred hhhHHhhcccccccCcEEEecccchhhHHHHHHhhhhcCCCceeEEecccccCCCCCCccCCCCCCeeeccC------CH
Q psy5948 177 LYPGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGGKMSSSEEDSKIDLLD------AP 250 (549)
Q Consensus 177 ~YP~LqAaDil~~~~d~~~gG~DQ~~~~~~~r~l~~~~~~~~~~~l~~plL~~l~G~KMSKS~~~s~I~L~D------sp 250 (549)
+|-+--+.|-...+++.++.|.||..+...-..+.+.+|..+|...|.|+|.+++|+||||..+ .+.+.+ .|
T Consensus 194 tY~~a~vVdD~~~~ithvIrG~d~~~~t~~q~~l~~alG~~~p~~~H~pli~~~~g~klSKR~g--~~~l~~l~~~G~~p 271 (476)
T PRK01406 194 TYNFAVVVDDHLMGITHVIRGEDHLSNTPKQILLYEALGWEVPVFAHLPLILGPDGKKLSKRHG--ATSVEQYRDMGYLP 271 (476)
T ss_pred cccchHHHHHHHcCCCEEEECchhhcCHHHHHHHHHHhCCCCCeEEEeeeeeCCCCCcccCcCC--ccCHHHHHHCCCCH
Confidence 3333333344557999999999999999888889999998888888899999999999999987 355543 55
Q ss_pred HHHHHHHHh
Q psy5948 251 ALVKKKLKK 259 (549)
Q Consensus 251 ~~i~kKI~~ 259 (549)
+.+..-+..
T Consensus 272 ~Ai~n~l~~ 280 (476)
T PRK01406 272 EALLNYLAL 280 (476)
T ss_pred HHHHHHHHH
Confidence 666655544
No 62
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=98.82 E-value=6.2e-08 Score=104.39 Aligned_cols=82 Identities=15% Similarity=0.196 Sum_probs=66.9
Q ss_pred chhhHHhhcccccccCcEEEecccchhhHHHHHHhhhhcCCCceeEEecccccCCCCCCccCCCCCCeeeccC------C
Q psy5948 176 LLYPGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGGKMSSSEEDSKIDLLD------A 249 (549)
Q Consensus 176 ~~YP~LqAaDil~~~~d~~~gG~DQ~~~~~~~r~l~~~~~~~~~~~l~~plL~~l~G~KMSKS~~~s~I~L~D------s 249 (549)
-+|-+.-+.|....++++++.|.|+..+......+.+.+|..+|...|.|+|.+.+|+||||+.+.. .+.+ .
T Consensus 182 PtY~fA~vVDD~~m~ITHViRG~d~l~~t~~q~~l~~alg~~~P~f~H~pli~~~~g~KLSKR~g~~--sv~~~r~~G~~ 259 (445)
T PRK12558 182 YLYTLPSVVDDIDMGITHIIRGEDHVTNTAVQIQIFEALGAKPPVFAHLSLLTGADGKGLSKRLGGL--SIRSLREDGIE 259 (445)
T ss_pred ccccccceeccccCCCCEEEechhhhhCCHHHHHHHHHhCCCCCeEEEcccccCCCcccccccCCCc--CHHHHHHCCCC
Confidence 4666777778888899999999999888887788889999988888899999999999999998742 3322 6
Q ss_pred HHHHHHHHHh
Q psy5948 250 PALVKKKLKK 259 (549)
Q Consensus 250 p~~i~kKI~~ 259 (549)
|+.+...+..
T Consensus 260 Peai~n~la~ 269 (445)
T PRK12558 260 PMAIASLLAR 269 (445)
T ss_pred HHHHHHHHHH
Confidence 7777776655
No 63
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=98.80 E-value=2.5e-08 Score=110.01 Aligned_cols=212 Identities=17% Similarity=0.169 Sum_probs=126.9
Q ss_pred CCCCHHHHHHHHHcccccccCHHHHH----HHH---h---cCCceEEEeecCCCccchhhhHHHHHHHHHH--HcCCcEE
Q psy5948 15 PSLSFDEKKQLITRNLQEFLGEDRLN----VIL---K---ERDLKIYWGTATTGRPHIAYFVPMSKIADFL--RAGCEVT 82 (549)
Q Consensus 15 ~~~~~~~~~~li~R~~~ei~~~~~L~----~~l---~---~~~~~v~~Gi~PTG~lHIGn~~~~~~l~~l~--~~G~~v~ 82 (549)
+.|+.+++.+.+....-|.+.+.+=+ .-| . +...+...+=.|||.+||||+.+++ +.++. +.|.+++
T Consensus 59 n~ms~ee~~~~l~~~~pe~~~~~~~~~~~~~~lp~L~~ae~g~V~tRFaPsPtG~LHIGharaal-ln~~~Ar~~~G~~i 137 (567)
T PRK04156 59 NSLSLEEQRERLEELAPELLEEEEEKKEEKKGLPPLPNAEKGKVVMRFAPNPSGPLHLGHARAAI-LNDEYAKMYGGKFI 137 (567)
T ss_pred hcCCHHHHHHHHHHhChhhhhhhhhhcccccCCCCCCCCCCCeEEEEeCCCCCCCccHHHHHHHH-HHHHHHHHcCCEEE
Confidence 46788888888876543332211100 001 1 1234567888899999999999864 23332 4688999
Q ss_pred EEEeCceeeecCCCChhHHHHHHHHHHHHHHHHHHHccCCCCCeeEEEEccccc-cccccHHHHHHHHc---cc-CHHHH
Q psy5948 83 ILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQ-LSKEYTLDVYRLSS---VI-TEHDA 157 (549)
Q Consensus 83 ilIaD~~a~~~~~~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS~~~-~~~~~~~~~~~l~~---~~-t~~~~ 157 (549)
+.+-|. |++. .+....+++. +...+.++|++++ .+++||+.- ...++...+.+.+. |. +..++
T Consensus 138 LRidDT-----Dpk~----~R~~~e~~~~-I~edL~wLGl~wD--~~~~qSdr~~~y~~~a~~Li~~G~AY~C~cs~ee~ 205 (567)
T PRK04156 138 LRFEDT-----DPRT----KRPDPEAYDM-ILEDLKWLGVKWD--EVVIQSDRLEIYYEYARKLIEMGGAYVCTCDPEEF 205 (567)
T ss_pred EeEccC-----CCCc----ccchHHHHHH-HHHHHHHcCCCCC--CccCcccCHHHHHHHHHHHHHcCCCccCCCCHHHH
Confidence 999883 2211 1234455554 4578899999998 578999871 11112111111000 00 11111
Q ss_pred HH-------------------hhHHHhhhc-----------------cCCC----------------cc-----cchhhH
Q psy5948 158 KK-------------------AGAEVVKQV-----------------EHPL----------------LS-----GLLYPG 180 (549)
Q Consensus 158 k~-------------------~~~~~~~~~-----------------~~~~----------------~~-----~~~YP~ 180 (549)
++ ..++.|..+ .+++ .| -.+|-+
T Consensus 206 ~~~r~~g~~~~~R~~~~ee~l~~~e~m~~G~~~~g~~vlR~k~d~~~~n~~~rD~v~~R~~~~~h~~~Gd~~~i~PtY~f 285 (567)
T PRK04156 206 KELRDAGKPCPHRDKSPEENLELWEKMLDGEYKEGEAVVRVKTDLEHPNPSVRDWVAFRIVKTPHPRVGDKYRVWPTYNF 285 (567)
T ss_pred HHHHhcCCCCCCcCCCHHHHHHHHHHhhcCccccCCeEEEEECcccCCCCCccccEEEEEcCCCccccCCCeEEEEEecc
Confidence 00 000000000 0000 00 124445
Q ss_pred HhhcccccccCcEEEecccchhhHHHHHHhhhhcCCCceeEEecccccCCCCCCccCCCC
Q psy5948 181 LQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGGKMSSSEE 240 (549)
Q Consensus 181 LqAaDil~~~~d~~~gG~DQ~~~~~~~r~l~~~~~~~~~~~l~~plL~~l~G~KMSKS~~ 240 (549)
--+.|....++++++.|.|+..+......+...+|..+|...+.|+|. .+|.|||||..
T Consensus 286 A~~VDD~l~GITHViRg~d~~~~t~~Q~~l~~~Lg~~~P~~~H~~~L~-~~g~kLSKR~~ 344 (567)
T PRK04156 286 AVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYDYFGWEYPETIHYGRLK-IEGFVLSTSKI 344 (567)
T ss_pred CceeeecCCCCCeEEcccccccChHHHHHHHHHcCCCCceEEEcceec-CCCceeecccc
Confidence 556677778999999999999998888888999998888889999986 68999999974
No 64
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=98.79 E-value=3.2e-08 Score=102.81 Aligned_cols=176 Identities=14% Similarity=0.082 Sum_probs=105.9
Q ss_pred ecCCCccchhhhHHHHHHHHH--HHcCCcEEEEEeCceeeecCCCChhHHHHHHHHHHHHHHHHHHHccCCCCCeeEEEE
Q psy5948 54 TATTGRPHIAYFVPMSKIADF--LRAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVK 131 (549)
Q Consensus 54 i~PTG~lHIGn~~~~~~l~~l--~~~G~~v~ilIaD~~a~~~~~~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~ 131 (549)
=.|||.|||||++..+ +.++ .+.|.++++.|-|. | + .+.+.++.+.++ ..|.++|++++ ...++
T Consensus 8 PsPtG~lHiG~~r~al-~n~~~Ar~~~G~~iLRieDt-----D---~---~R~~~~~~~~i~-~~L~wlGl~~D-~~~~~ 73 (314)
T PF00749_consen 8 PSPTGYLHIGHARTAL-LNYLFARKYGGKFILRIEDT-----D---P---ERCRPEFYDAIL-EDLRWLGLEWD-YGPYY 73 (314)
T ss_dssp --SSSS-BHHHHHHHH-HHHHHHHHTTSEEEEEEETS-----S---T---TTCHHHHHHHHH-HHHHHHT---S-TCEEE
T ss_pred CCCCCCcccchhHHHH-HHHHHHhccCceEEEecccc-----c---c---ccchhhHHHHHH-hheeEEEEecC-CeEEe
Confidence 3689999999999864 2232 25789999999991 1 1 234556666544 68899999996 46888
Q ss_pred cccccc-ccccHHHHHH-------------------H----H--ccc-------CHH--HHHHhhH------HHhhhccC
Q psy5948 132 GTDYQL-SKEYTLDVYR-------------------L----S--SVI-------TEH--DAKKAGA------EVVKQVEH 170 (549)
Q Consensus 132 qS~~~~-~~~~~~~~~~-------------------l----~--~~~-------t~~--~~k~~~~------~~~~~~~~ 170 (549)
||+--. ..++...+.. . . ... ... ++..... .+++....
T Consensus 74 QS~r~~~Y~~~~~~L~~~g~aY~C~Csr~~l~~~r~~~~~~~~~~~~~y~~~c~~~~~~~~~~~~~~~~~~~iRlk~~~~ 153 (314)
T PF00749_consen 74 QSDRLEIYQEAAEKLIDKGKAYPCFCSREELKAAREAQEGAGCPHRPRYPGTCRELTEEEMRAGLAKGGPAVIRLKVPME 153 (314)
T ss_dssp GGGGHHHHHHHHHHHHHTTSEEEEESEHHHHHHHHHHHHHTTSTTTTSBHHHHHCHHHHHHHHHHHTTTSEEEEE-SSST
T ss_pred HHHHHHHHHHHHHHHhhcCCCccccCCHHHHHHHHHHhhccCCCccccchhhhhhhhHHHHHhhhccCCceeeeeecccc
Confidence 998711 1111111110 0 0 000 001 0110000 00000000
Q ss_pred ---------------------C-----CcccchhhHHhhcccccccCcEEEecccchhhHHHHHHhhhhcCCCceeEEec
Q psy5948 171 ---------------------P-----LLSGLLYPGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMN 224 (549)
Q Consensus 171 ---------------------~-----~~~~~~YP~LqAaDil~~~~d~~~gG~DQ~~~~~~~r~l~~~~~~~~~~~l~~ 224 (549)
. .=+..+|-+.-+.|-..+++++++.|.|...+......+.+.+|..+|...+.
T Consensus 154 ~~~~~~D~v~g~i~~~~~~~~D~vi~r~dg~ptY~fA~vVDD~~~gITHViRG~D~l~~t~~Q~~L~~~Lg~~~P~~~H~ 233 (314)
T PF00749_consen 154 SPIAFRDLVRGRIIFDPSDLGDFVIRRSDGYPTYHFAVVVDDHLMGITHVIRGEDLLSSTPRQILLYEALGWPPPPYAHL 233 (314)
T ss_dssp CCEEEEETTTEEEEEEGGGSBTEEEESTTSEB-HHHHHHHHHHHTT-SEEEEEGGGTTCHHHHHHHHHHCTSSS-EEEEE
T ss_pred cccccccCcceeeeeccccCCchhccccccCcccccceeecccccccCeEEEccccccccHHHHHHHHHhCCCCcceEee
Confidence 0 01235777888888888999999999999998888888999999988888999
Q ss_pred ccccCCCCCCccCCCCCCe
Q psy5948 225 PMVPGLAGGKMSSSEEDSK 243 (549)
Q Consensus 225 plL~~l~G~KMSKS~~~s~ 243 (549)
|++.+.+|+|+||+.+...
T Consensus 234 pl~l~~~g~kLSKR~~~~~ 252 (314)
T PF00749_consen 234 PLILNEDGKKLSKRKGAKS 252 (314)
T ss_dssp EEEEETTSSBSSTTCSHHB
T ss_pred eeeecCCCcEechhhcccc
Confidence 9999999999999987533
No 65
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=8.8e-08 Score=103.83 Aligned_cols=65 Identities=15% Similarity=0.178 Sum_probs=55.7
Q ss_pred hhhHHhhcccccccCcEEEecccchhhHHHHHHhhhhcCCCceeEEecccccCCCCCCccCCCCC
Q psy5948 177 LYPGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGGKMSSSEED 241 (549)
Q Consensus 177 ~YP~LqAaDil~~~~d~~~gG~DQ~~~~~~~r~l~~~~~~~~~~~l~~plL~~l~G~KMSKS~~~ 241 (549)
+|-+.-+.|...++++.++.|.|+..+....+-+.+.+|..+|...|.|+|.+-+|+|||||.+.
T Consensus 193 tY~favvvDD~~mgITHviRG~d~~~nt~~q~~l~~~lg~~~P~~~H~~li~~~~g~kLSKr~~~ 257 (472)
T COG0008 193 TYNFAVVVDDHLMGITHVLRGEDHLDNTPRQIWLYEALGWPPPVYAHLPLLLNEDGKKLSKRKGA 257 (472)
T ss_pred ccceeeeechhhcCCceEEechhhccCCHHHHHHHHHcCCCCCcEEEeeeeecCCCCeecCccCc
Confidence 44455556666689999999999999998888899999999999999999999888899999873
No 66
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=98.52 E-value=4.3e-07 Score=100.32 Aligned_cols=172 Identities=15% Similarity=0.065 Sum_probs=107.2
Q ss_pred eecCCCccchhhhHHHHHHHHHH--HcCCcEEEEEeCceeeecCCCChhHHHHHHHHHHHHHHHHHHHccCCCCCeeEEE
Q psy5948 53 GTATTGRPHIAYFVPMSKIADFL--RAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFV 130 (549)
Q Consensus 53 Gi~PTG~lHIGn~~~~~~l~~l~--~~G~~v~ilIaD~~a~~~~~~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~ 130 (549)
.=.|||.|||||+..++ +.++. +.|.++++.+-| .++ .+...++.+.+ ...|.++|++++. .++
T Consensus 58 APsPtGyLHIGharaAl-lN~l~Ar~~gG~~iLRiED--------TDp---~R~~~e~~d~I-leDL~WLGl~wDe-~~~ 123 (601)
T PTZ00402 58 PPEASGFLHIGHAKAAL-INSMLADKYKGKLVFRFDD--------TNP---SKEKEHFEQAI-LDDLATLGVSWDV-GPT 123 (601)
T ss_pred CCCCCCcccHHHHHHHH-HHHHHHHHhCCEEEEEEcC--------CCC---cccCHHHHHHH-HHHHHHCCCCCCC-cee
Confidence 34577999999999864 23332 568899999988 222 23455666654 4789999999973 267
Q ss_pred Eccccc-cccccHHHHHH---------------HHc---------ccCHHHHHHhhHHHhhhc---c-------------
Q psy5948 131 KGTDYQ-LSKEYTLDVYR---------------LSS---------VITEHDAKKAGAEVVKQV---E------------- 169 (549)
Q Consensus 131 ~qS~~~-~~~~~~~~~~~---------------l~~---------~~t~~~~k~~~~~~~~~~---~------------- 169 (549)
+||+.- ...++...+.+ -.+ ..+..+... .++.++.. +
T Consensus 124 ~QSdr~d~y~e~a~~Li~~G~AY~c~cs~eei~~~r~~g~p~~~R~~s~ee~l~-~~~~m~~g~~~~~~~~lR~kid~~~ 202 (601)
T PTZ00402 124 YSSDYMDLMYEKAEELIKKGLAYCDKTPREEMQKCRFDGVPTKYRDISVEETKR-LWNEMKKGSAEGQETCLRAKISVDN 202 (601)
T ss_pred eccccHHHHHHHHHHHHHcCCEEEecCCHHHHHHHHhCCCCCCCCCCCHHHHHH-HHHhccccccCCCceEEEEecccCC
Confidence 899871 11122111111 000 001111000 11111100 0
Q ss_pred -CCCc---------------------ccchhhHHhhcccccccCcEEEecccchhhHHHHHHhhhhcCCCceeEEecccc
Q psy5948 170 -HPLL---------------------SGLLYPGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMV 227 (549)
Q Consensus 170 -~~~~---------------------~~~~YP~LqAaDil~~~~d~~~gG~DQ~~~~~~~r~l~~~~~~~~~~~l~~plL 227 (549)
+.++ +-.+|-+.-+.|....+++.++.|.|...+...-.-+.+.++..+|...+.|+
T Consensus 203 ~n~~~rD~Vl~R~~~~~h~rtGdk~dgyPtYdfA~vVDD~l~gITHvlRg~E~l~~tp~q~~L~~aLg~~~P~~~h~~r- 281 (601)
T PTZ00402 203 ENKAMRDPVIYRVNLTPHARQGTKYKAYPTYDFCCPIIDSVEGVTHALRTNEYHDRNDQYYWFCDALGIRKPIVEDFSR- 281 (601)
T ss_pred CCCCccCCEEEEEcCCcccccCCCCceeeccCcceeeEccccCCceEeechhhhhCcHHHHHHHHHhCCCCceEEEEee-
Confidence 0000 12345566666777789999999999998888888888999988888888886
Q ss_pred cCCCCCCccCCCC
Q psy5948 228 PGLAGGKMSSSEE 240 (549)
Q Consensus 228 ~~l~G~KMSKS~~ 240 (549)
.+++|.||||+..
T Consensus 282 Ln~~g~kLSKRkl 294 (601)
T PTZ00402 282 LNMEYSVMSKRKL 294 (601)
T ss_pred EcCCCCcccccCC
Confidence 6899999999975
No 67
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=98.44 E-value=5.7e-07 Score=98.32 Aligned_cols=168 Identities=13% Similarity=0.070 Sum_probs=103.9
Q ss_pred cCCCccchhhhHHHHHHHHHH--HcCCcEEEEEeCceeeecCCCChhHHHHHHHHHHHHHHHHHHHccCCCCCeeEEEEc
Q psy5948 55 ATTGRPHIAYFVPMSKIADFL--RAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKG 132 (549)
Q Consensus 55 ~PTG~lHIGn~~~~~~l~~l~--~~G~~v~ilIaD~~a~~~~~~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~q 132 (549)
.|||.|||||+..++ +.++. +.|.++++.+-| .++ .+...++.+.+ ...|.++|++++ .+++|
T Consensus 19 sPtG~LHiGharaAl-ln~l~Ar~~gG~~iLRiED--------TDp---~R~~~e~~~~I-~~dL~WLGl~wD--~~~~q 83 (523)
T PLN03233 19 EPSGYLHIGHAKAAL-LNDYYARRYKGRLILRFDD--------TNP---SKEKAEFEESI-IEDLGKIEIKPD--SVSFT 83 (523)
T ss_pred CCCCcccHHHHHHHH-HHHHHHHHhCCEEEEEECC--------CCC---CccchHHHHHH-HHHHHHhCCCCC--CCccc
Confidence 577999999999864 23332 568899999988 222 23455666654 468899999998 57899
Q ss_pred ccc-ccccccHHHHHHHH------------------------cccCHHHHHHhhHHHhhhc-----------------cC
Q psy5948 133 TDY-QLSKEYTLDVYRLS------------------------SVITEHDAKKAGAEVVKQV-----------------EH 170 (549)
Q Consensus 133 S~~-~~~~~~~~~~~~l~------------------------~~~t~~~~k~~~~~~~~~~-----------------~~ 170 (549)
|+. ....++...+.+.+ +..+..+....+.. +..+ .+
T Consensus 84 Sdr~~~y~~~a~~Li~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~~~~-m~~G~~~~~~~~lR~K~d~~~~n 162 (523)
T PLN03233 84 SDYFEPIRCYAIILIEEGLAYMDDTPQEEMKKERADRAESKHRNQSPEEALEMFKE-MCSGKEEGGAWCLRAKIDMQSDN 162 (523)
T ss_pred cccHHHHHHHHHHHHHcCCeEecCCCHHHHHHHHhhhccCccccCCHHHHHHHHHH-HhcccccCCCeEEEEeCcccCCC
Confidence 987 11112222221111 00111110000000 0000 00
Q ss_pred CCcc---------------------cchhhHHhhcccccccCcEEEecccchhhHHHHHHhhhhcCCCceeEEecccccC
Q psy5948 171 PLLS---------------------GLLYPGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPG 229 (549)
Q Consensus 171 ~~~~---------------------~~~YP~LqAaDil~~~~d~~~gG~DQ~~~~~~~r~l~~~~~~~~~~~l~~plL~~ 229 (549)
.++. -.+|-+.-+.|-...++++++.|.|+..+.....-+.+.++..+|.. +++...+
T Consensus 163 ~~~~D~Vi~R~d~~~h~~~Gd~~~~~PtY~fA~~VDD~l~gITHviRg~E~~~~t~~q~~l~~aLg~~~P~~-~~f~rln 241 (523)
T PLN03233 163 GTLRDPVLFRQNTTPHHRSGTAYKAYPTYDLACPIVDSIEGVTHALRTTEYDDRDAQFFWIQKALGLRRPRI-HAFARMN 241 (523)
T ss_pred CCCcCCEEEEEcCCcccccCCcccceeccCCceeeeccccCCCeEEechhhhcCCHHHHHHHHHhCCCCCee-eeeEEEC
Confidence 0111 12444555666667899999999999998888888889999876654 5588889
Q ss_pred CCCCCccCCC
Q psy5948 230 LAGGKMSSSE 239 (549)
Q Consensus 230 l~G~KMSKS~ 239 (549)
+.|.||||+.
T Consensus 242 ~~~~kLSKR~ 251 (523)
T PLN03233 242 FMNTVLSKRK 251 (523)
T ss_pred CCCCcccccC
Confidence 9999999996
No 68
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=98.36 E-value=1.1e-06 Score=86.45 Aligned_cols=180 Identities=19% Similarity=0.155 Sum_probs=97.4
Q ss_pred EEeecCCCccchhhhHHHH---HHHHHHH-cCCcEEEE--EeCceeeecCCCCh-hHHHHHHHHHHHHHHHHHHHccCCC
Q psy5948 51 YWGTATTGRPHIAYFVPMS---KIADFLR-AGCEVTIL--FADLHAYLDNMKAP-WELLALRTKYYEESIKAMLESIDVP 123 (549)
Q Consensus 51 ~~Gi~PTG~lHIGn~~~~~---~l~~l~~-~G~~v~il--IaD~~a~~~~~~~~-~~~~~~~~~~~~~~i~~~l~a~Gld 123 (549)
|++--|+|.+||||+++.+ .+.++++ .|++|+.. +.|+=..+....-. ....+....+.+. +...+.++|+.
T Consensus 6 ~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~~~~~~~~~~~~~-~~~~~~~L~i~ 84 (212)
T cd00671 6 FVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLEKWRKLVEESIKA-DLETYGRLDVR 84 (212)
T ss_pred ecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCc
Confidence 7888899999999999643 2555554 59988522 22321111110000 0012222233332 45677889998
Q ss_pred CCeeEEEEccccccccccHHHHHH-HHcc-----------cCHHHHHHhhHHHhhhccCCCcccchhh---HHhhccccc
Q psy5948 124 ISKLKFVKGTDYQLSKEYTLDVYR-LSSV-----------ITEHDAKKAGAEVVKQVEHPLLSGLLYP---GLQALDEEY 188 (549)
Q Consensus 124 p~k~~i~~qS~~~~~~~~~~~~~~-l~~~-----------~t~~~~k~~~~~~~~~~~~~~~~~~~YP---~LqAaDil~ 188 (549)
++ .+.+.|+. ......+.+ |... +...+.+......+.. +=|..+|. +-.+.|-+.
T Consensus 85 ~d--~~~~es~~---~~~~~~~i~~L~~~g~~~~~~g~~~~~~~~~~~~~d~vl~r----sdG~~~Y~~~DlA~~~~~~~ 155 (212)
T cd00671 85 FD--VWFGESSY---LGLMGKVVELLEELGLLYEEDGALWLDLTEFGDDKDRVLVR----SDGTYTYFTRDIAYHLDKFE 155 (212)
T ss_pred Cc--eecchhhh---hhHHHHHHHHHHHCCCEEEeCCcEEEechhhCCCCCeEEEE----CCCCccchHHHHHHHHHHHh
Confidence 76 34455543 111222221 1111 0000100000000001 11334666 344444444
Q ss_pred ccCcEE--EecccchhhHHHHHHhhhhcCCC---ceeEEecccccCCCCCCccCCCC
Q psy5948 189 LKVDAQ--FGGVDQRKIFTLAEKYLPQLGYA---KRIHFMNPMVPGLAGGKMSSSEE 240 (549)
Q Consensus 189 ~~~d~~--~gG~DQ~~~~~~~r~l~~~~~~~---~~~~l~~plL~~l~G~KMSKS~~ 240 (549)
+++|.+ +.|.||..|+..-..+++.+|.. ...++..+++...+|+||||+.|
T Consensus 156 ~~~~~~i~v~g~~~~~~~~~~~~~~~~lg~~~~~~~~h~~~~~v~~~~~~kmS~R~G 212 (212)
T cd00671 156 RGADKIIYVVGADHHGHFKRLFAALELLGYDEAKKLEHLLYGMVNLPKEGKMSTRAG 212 (212)
T ss_pred cCCCEEEEEECCCHHHHHHHHHHHHHHcCCCCCCCeEEEEEEeEEcCCCCCCCCCCC
Confidence 688877 89999999999988899998864 23455568888777999999864
No 69
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=98.26 E-value=2.8e-06 Score=94.07 Aligned_cols=185 Identities=21% Similarity=0.237 Sum_probs=99.9
Q ss_pred EEeecCCCccchhhhHHHH---HHHHHHH-cCCcE--EEEEeCceeeecCCCChh--HHHHHHHHHHHHHHHHHHHccCC
Q psy5948 51 YWGTATTGRPHIAYFVPMS---KIADFLR-AGCEV--TILFADLHAYLDNMKAPW--ELLALRTKYYEESIKAMLESIDV 122 (549)
Q Consensus 51 ~~Gi~PTG~lHIGn~~~~~---~l~~l~~-~G~~v--~ilIaD~~a~~~~~~~~~--~~~~~~~~~~~~~i~~~l~a~Gl 122 (549)
|+|--|+|.+||||++..+ .+.++.+ .|++| +..+.|+-..++...... ...+.+..+.+ .+...|..+|+
T Consensus 117 ~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~-~~~~~l~~LgI 195 (507)
T PRK01611 117 YVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLD-EIKEDLDRLGV 195 (507)
T ss_pred ecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCC
Confidence 7899999999999998643 2555554 69888 444566544332100000 01122233333 35678889999
Q ss_pred CCCeeEEEEccccccccccHHHHHH-HHcc-cCH--H------HHHHhh----HHHhhhccCCCcccchhhHHhhccccc
Q psy5948 123 PISKLKFVKGTDYQLSKEYTLDVYR-LSSV-ITE--H------DAKKAG----AEVVKQVEHPLLSGLLYPGLQALDEEY 188 (549)
Q Consensus 123 dp~k~~i~~qS~~~~~~~~~~~~~~-l~~~-~t~--~------~~k~~~----~~~~~~~~~~~~~~~~YP~LqAaDil~ 188 (549)
.++ .+++.|+.. +...+..+++ |... ... . +..... ....++ =|..+|.. .|+-+
T Consensus 196 ~~D--~~~~es~~~-~~~~~~~~~~~L~~~G~~y~~~~Ga~~~~~~~~~~~~~~vl~ks-----dG~~~Y~t---~Dia~ 264 (507)
T PRK01611 196 HFD--VWFSESELY-YNGKVDEVVEDLKEKGLLYVESDGALWVRLTEFGDDKDRVLIKS-----DGTYTYFT---RDIAY 264 (507)
T ss_pred eee--EEeecCcch-hcchHHHHHHHHHHCCCEEEeeCCcEEEEchhhCCCCCeEEEEC-----CCCccchH---HHHHH
Confidence 886 345555542 2222222222 1111 000 0 000000 000111 12234432 13222
Q ss_pred -------ccCcEEEecccchhhHHHHHHhhhhcCCCce-----eEEecccccCCCCCCccCCCCCCeeeccC
Q psy5948 189 -------LKVDAQFGGVDQRKIFTLAEKYLPQLGYAKR-----IHFMNPMVPGLAGGKMSSSEEDSKIDLLD 248 (549)
Q Consensus 189 -------~~~d~~~gG~DQ~~~~~~~r~l~~~~~~~~~-----~~l~~plL~~l~G~KMSKS~~~s~I~L~D 248 (549)
++--+-+.|.||..|+..-..+.+.+|..+. .+....++.+-+|+|||||.|+ .|++.|
T Consensus 265 ~~~k~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~h~~~glv~~~~g~KMSkR~Gn-~i~l~d 335 (507)
T PRK01611 265 HLYKFERFDRVIYVVGADHHGHFKRLKAALKALGYDPDALEVLLHQMVGLVRGGEGVKMSTRAGN-VVTLDD 335 (507)
T ss_pred HHHHHhhcCEEEEEECCChHHHHHHHHHHHHHcCCCcccceEEEEEEEEeeECCCCCcccCCCCc-eeEHHH
Confidence 1233447999999999888888888887533 2223457777788999999996 888876
No 70
>PLN02859 glutamine-tRNA ligase
Probab=98.22 E-value=9.2e-06 Score=92.22 Aligned_cols=190 Identities=16% Similarity=0.114 Sum_probs=113.6
Q ss_pred CHHHHHHHHhc--CCceEEEeecCCCccchhhhHHHHHHHHHH--HcCCcEEEEEeCceeeecCCCChhHHHHHHHHHHH
Q psy5948 35 GEDRLNVILKE--RDLKIYWGTATTGRPHIAYFVPMSKIADFL--RAGCEVTILFADLHAYLDNMKAPWELLALRTKYYE 110 (549)
Q Consensus 35 ~~~~L~~~l~~--~~~~v~~Gi~PTG~lHIGn~~~~~~l~~l~--~~G~~v~ilIaD~~a~~~~~~~~~~~~~~~~~~~~ 110 (549)
+.+-+.+.|+. .+.+.=..=.|||.|||||...++. .++. +.|..+++.+-| +++ .+...+|.+
T Consensus 250 ~~~~~~~hl~~t~g~V~tRFaPsPtG~LHiGharaall-N~~~Ar~~~G~~~LRieD--------Tdp---~r~~~e~~~ 317 (788)
T PLN02859 250 TKEILEKHLKATGGKVYTRFPPEPNGYLHIGHAKAMFV-DFGLAKERGGCCYLRFDD--------TNP---EAEKKEYID 317 (788)
T ss_pred cHHHHHHHHhhcCCceEEEeCCCCCCcccHHHHHHHHH-HHHHHHHhCCEEEEEecC--------CCC---CccchHHHH
Confidence 34556666654 3334444556789999999998642 2322 568899999988 222 234456666
Q ss_pred HHHHHHHHccCCCCCeeEEEEccccc-cccccHHHHHHHHc---cc-CHHHHHH-------------------hhHHHhh
Q psy5948 111 ESIKAMLESIDVPISKLKFVKGTDYQ-LSKEYTLDVYRLSS---VI-TEHDAKK-------------------AGAEVVK 166 (549)
Q Consensus 111 ~~i~~~l~a~Gldp~k~~i~~qS~~~-~~~~~~~~~~~l~~---~~-t~~~~k~-------------------~~~~~~~ 166 (549)
.+ ...+.++|++|+ .+++||+.- ..-++...+++-+. |+ +..+++. ..++.|+
T Consensus 318 ~I-~edL~WLG~~~d--~~~~qSd~f~~~Y~~A~~Li~~G~AY~C~ct~eei~~~R~~~~~sp~Rd~s~eenl~lfe~m~ 394 (788)
T PLN02859 318 HI-EEIVEWMGWEPF--KITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIEESLKLFEDMR 394 (788)
T ss_pred HH-HHHHHHcCCCCC--CcccccHhHHHHHHHHHHHHHcCCeEeccCCHHHHHHHHhhhccCCCCCCChHHhhhhhHHHH
Confidence 54 468899999998 578999872 11122222221110 00 1111000 0111111
Q ss_pred hc-----------------cCCC----------------c-cc-chhh---HHhhcccccccCcEEEecccchhhHHHHH
Q psy5948 167 QV-----------------EHPL----------------L-SG-LLYP---GLQALDEEYLKVDAQFGGVDQRKIFTLAE 208 (549)
Q Consensus 167 ~~-----------------~~~~----------------~-~~-~~YP---~LqAaDil~~~~d~~~gG~DQ~~~~~~~r 208 (549)
.+ .++. . .. .+|| +..+.|....++++++.|.|+..+...-.
T Consensus 395 ~g~~~~G~~vlR~Kid~~~~n~~~rD~V~~RI~~~~h~rtgdk~~iyPtYdFA~~vdD~legITHvLRg~E~~~~~~~y~ 474 (788)
T PLN02859 395 RGLIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSLENITHSLCTLEFETRRASYY 474 (788)
T ss_pred hchhccCCeEEEEeccCCCCCceeeeceeEEEeccCCCccCCCeEEEecccccccccccccCCceEeechhhhcCCHHHH
Confidence 10 0000 0 01 1244 34445555689999999999988888877
Q ss_pred HhhhhcCCCceeEEecccccCCCCCCccCCCC
Q psy5948 209 KYLPQLGYAKRIHFMNPMVPGLAGGKMSSSEE 240 (549)
Q Consensus 209 ~l~~~~~~~~~~~l~~plL~~l~G~KMSKS~~ 240 (549)
-+...++..+|...+.| ..+++|.||||+..
T Consensus 475 wl~~aLg~~~P~~~~f~-rLn~~~t~LSKRkl 505 (788)
T PLN02859 475 WLLDSLGLYQPYVWEYS-RLNVTNTVMSKRKL 505 (788)
T ss_pred HHHHHcCCCCCcEEeee-eECCCCCcccCcCc
Confidence 88899998888888888 56899999999975
No 71
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=98.14 E-value=1.2e-05 Score=88.52 Aligned_cols=174 Identities=14% Similarity=0.119 Sum_probs=99.8
Q ss_pred EEeecCCCccchhhhHHHHHHHHH--HHcCCcEEEEEeCceeeecCCCChhHHHHHHHHHHHHHHHHHHHccCCCCCeeE
Q psy5948 51 YWGTATTGRPHIAYFVPMSKIADF--LRAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLK 128 (549)
Q Consensus 51 ~~Gi~PTG~lHIGn~~~~~~l~~l--~~~G~~v~ilIaD~~a~~~~~~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~k~~ 128 (549)
=..=.|||.|||||+..++. .++ .+.|.++++.+-| +++ .+...++.+.+ ...|.++|++++. .
T Consensus 33 RFaPsPtG~LHiG~ar~al~-n~~~Ar~~~G~~iLRieD--------Td~---~r~~~e~~~~I-~~dL~wLGi~~d~-~ 98 (554)
T PRK05347 33 RFPPEPNGYLHIGHAKSICL-NFGLAQDYGGKCNLRFDD--------TNP---EKEDQEYVDSI-KEDVRWLGFDWSG-E 98 (554)
T ss_pred EeCCCCCCcccHHHHHHHHH-HHHHHHHhCCEEEEEECC--------CCC---CcCChHHHHHH-HHHHHHcCCCCCC-C
Confidence 33446779999999998642 222 2568899999988 222 23445666654 4688999999942 4
Q ss_pred EEEccccc-cccccHHHHHHHH---------------c-------------ccCHHHHHHhhHHHhhhcc----------
Q psy5948 129 FVKGTDYQ-LSKEYTLDVYRLS---------------S-------------VITEHDAKKAGAEVVKQVE---------- 169 (549)
Q Consensus 129 i~~qS~~~-~~~~~~~~~~~l~---------------~-------------~~t~~~~k~~~~~~~~~~~---------- 169 (549)
+++||+.- ..-++...+.+.+ + ..+..+... .++.++.+.
T Consensus 99 ~~~qS~r~~~~y~~a~~Li~~G~AY~c~cs~eei~~~R~~~~~~g~~~~~R~~s~eenl~-~~~~m~~G~~~~g~~vlR~ 177 (554)
T PRK05347 99 LRYASDYFDQLYEYAVELIKKGKAYVDDLSAEEIREYRGTLTEPGKNSPYRDRSVEENLD-LFERMRAGEFPEGSAVLRA 177 (554)
T ss_pred ceeeecCHHHHHHHHHHHHHcCCEeeCCCCHHHHHHHhhhhhhcCCCCCccCCCHHHHHH-HHHHHHCCCCCCCcEEEEE
Confidence 68899861 1112221111100 0 001111111 111122110
Q ss_pred -------CCCc----------------cc--chhh---HHhhcccccccCcEEEecccchhhHHHHHHhhhhcCCC-cee
Q psy5948 170 -------HPLL----------------SG--LLYP---GLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYA-KRI 220 (549)
Q Consensus 170 -------~~~~----------------~~--~~YP---~LqAaDil~~~~d~~~gG~DQ~~~~~~~r~l~~~~~~~-~~~ 220 (549)
++.+ |. ..|| +..+.|....++++++.|.|+..|...-.-+.+.+|.. .|.
T Consensus 178 Kid~~~~n~~~rD~Vi~R~~~~~H~r~G~k~~iyPtYdfA~~vdD~l~gITHvlRg~E~~~~t~~~~~i~~alg~~~~P~ 257 (554)
T PRK05347 178 KIDMASPNINMRDPVLYRIRHAHHHRTGDKWCIYPMYDFAHCISDAIEGITHSLCTLEFEDHRPLYDWVLDNLPIPPHPR 257 (554)
T ss_pred EeeccCCCCCCCCCEEEEecCCCCCccCCceeeecCcCccceeeccccCCceEEeccccccChHHHHHHHHHcCCCCCCc
Confidence 0000 10 0144 44556666689999999999999988888888888743 453
Q ss_pred EEecccccCCCCCCccCCCC
Q psy5948 221 HFMNPMVPGLAGGKMSSSEE 240 (549)
Q Consensus 221 ~l~~plL~~l~G~KMSKS~~ 240 (549)
.+.-..| +++|.||||+..
T Consensus 258 ~~~F~rl-n~~~~~LSKRkl 276 (554)
T PRK05347 258 QYEFSRL-NLTYTVMSKRKL 276 (554)
T ss_pred eEEEEEE-CCCCCccccccc
Confidence 3322223 789999999975
No 72
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=98.12 E-value=1.2e-05 Score=88.97 Aligned_cols=176 Identities=13% Similarity=0.081 Sum_probs=106.3
Q ss_pred eEEEee--cCCCccchhhhHHHHHHHHHH--HcCCcEEEEEeCceeeecCCCChhHHHHHHHHHHHHHHHHHHHccCCCC
Q psy5948 49 KIYWGT--ATTGRPHIAYFVPMSKIADFL--RAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPI 124 (549)
Q Consensus 49 ~v~~Gi--~PTG~lHIGn~~~~~~l~~l~--~~G~~v~ilIaD~~a~~~~~~~~~~~~~~~~~~~~~~i~~~l~a~Gldp 124 (549)
.+.+=| .|||.|||||...++ +.++. +.|.++++.+-|. | + .+...++.+.+ ...+.++|+++
T Consensus 93 ~vvtRFaPsPtG~LHiGharaal-ln~~~Ar~~~G~~iLRidDT-----D---p---~R~~~e~~~~I-~edL~wLGi~~ 159 (560)
T TIGR00463 93 EVVMRFAPNPSGPLHIGHARAAI-LNQYFAKKYKGKLIIRFDDT-----D---P---RRVKPEAYDMI-LEDLDWLGVKG 159 (560)
T ss_pred eeEEEeCCCCCCCccHHHHHHHH-HHHHHHHhcCCEEEEEeCcC-----C---c---ccccHHHHHHH-HHHHHHcCCCC
Confidence 344444 567999999999864 23322 4688999998882 2 2 23344566654 46889999999
Q ss_pred CeeEEEEccccc-cccccHHHHHHHH------------------------cccCHHHHHHhhHHHhhhc-----------
Q psy5948 125 SKLKFVKGTDYQ-LSKEYTLDVYRLS------------------------SVITEHDAKKAGAEVVKQV----------- 168 (549)
Q Consensus 125 ~k~~i~~qS~~~-~~~~~~~~~~~l~------------------------~~~t~~~~k~~~~~~~~~~----------- 168 (549)
+ .+++||+.- ...++...+.+-+ +..+..+-.. .++.|..+
T Consensus 160 d--~~~~qSd~~~~y~~~a~~Li~~G~AY~C~cs~eei~~~r~~g~~~~cR~~s~eenl~-~fe~m~~g~~~~~~~~lR~ 236 (560)
T TIGR00463 160 D--EVVYQSDRIEEYYDYCRKLIEMGKAYVCDCPPEEFRELRNDGVACACRDRSVEENLE-IWEEMLNGTEEGGKVVVRA 236 (560)
T ss_pred C--ccccccccHHHHHHHHHHHHHcCCceeecCCHHHHHHHHhCCCCCCccCCCHHHHHH-HHHHHhcccccCCCeEEEE
Confidence 8 578999871 1111211111100 0011111000 00111100
Q ss_pred ------cCCC----------------cc-----cchhhHHhhcccccccCcEEEecccchhhHHHHHHhhhhcCCCceeE
Q psy5948 169 ------EHPL----------------LS-----GLLYPGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIH 221 (549)
Q Consensus 169 ------~~~~----------------~~-----~~~YP~LqAaDil~~~~d~~~gG~DQ~~~~~~~r~l~~~~~~~~~~~ 221 (549)
.+.. .| -.+|-+..+.|....++++++.|.|...+..-...+...++...|..
T Consensus 237 K~d~~~~n~~~rD~V~~R~~~~~h~~~Gd~~~~~PtYdfA~~VDD~l~gITHviRg~E~~~nT~rq~yl~~~lg~~~P~~ 316 (560)
T TIGR00463 237 KTDYKHKNPAIRDWVIFRINKTPHPRTGDKYKVYPTMDFSVPIDDHLLGVTHVLRGKDHIDNERKQQYIYMYFGWELPEF 316 (560)
T ss_pred ECCCcCCCccccCcEEEEecCCCccccCCEEEEEeccccceEeecccCCCCeEEechhhhcCCHHHHHHHHHcCCCCCeE
Confidence 0001 11 12555666677777899999999998876666666777778888888
Q ss_pred EecccccCCCCCCccCCCC
Q psy5948 222 FMNPMVPGLAGGKMSSSEE 240 (549)
Q Consensus 222 l~~plL~~l~G~KMSKS~~ 240 (549)
.+.|++..-.|.|+||+..
T Consensus 317 ~h~~~l~~~~~~kLskk~k 335 (560)
T TIGR00463 317 IHWGRLKINDVRTLSTSSK 335 (560)
T ss_pred EEEcceecCCCcEecchhh
Confidence 8899988888889999864
No 73
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=98.10 E-value=1.4e-05 Score=87.59 Aligned_cols=171 Identities=13% Similarity=0.116 Sum_probs=96.6
Q ss_pred cCCCccchhhhHHHHHHHHH--HHcCCcEEEEEeCceeeecCCCChhHHHHHHHHHHHHHHHHHHHccCCCCCeeEEEEc
Q psy5948 55 ATTGRPHIAYFVPMSKIADF--LRAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKG 132 (549)
Q Consensus 55 ~PTG~lHIGn~~~~~~l~~l--~~~G~~v~ilIaD~~a~~~~~~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~q 132 (549)
.|||.|||||+..++. .++ .+.|.++++.+-| +++ .+...++.+.+ ...|.++|++++. .+++|
T Consensus 8 sPtG~LHiG~ar~al~-n~~~A~~~~G~~iLRieD--------Td~---~r~~~e~~~~I-~~dL~wLG~~~d~-~~~~q 73 (522)
T TIGR00440 8 EPNGYLHIGHAKSICL-NFGYAKYYNGTCNLRFDD--------TNP---VKEDPEYVESI-KRDVEWLGFKWEG-KIRYS 73 (522)
T ss_pred CCCCcccHHHHHHHHH-HHHHHHHhCCEEEEEEcC--------CCc---ccCChHHHHHH-HHHHHHcCCCCCC-CceEc
Confidence 6899999999998642 222 2568899999988 222 23455666654 4688999999942 36789
Q ss_pred cccc-cccccHHHHHH---------------HHc-------------ccCHHHHHHhhHHHhhhcc--------------
Q psy5948 133 TDYQ-LSKEYTLDVYR---------------LSS-------------VITEHDAKKAGAEVVKQVE-------------- 169 (549)
Q Consensus 133 S~~~-~~~~~~~~~~~---------------l~~-------------~~t~~~~k~~~~~~~~~~~-------------- 169 (549)
|+.- ...++...+.. -.+ ..+..+-.. .++.|..+.
T Consensus 74 S~~~~~~~~~a~~Li~~G~AY~c~cs~eel~~~R~~~~~~g~~~~~R~~s~ee~l~-~f~~m~~G~~~~g~~vlR~Kid~ 152 (522)
T TIGR00440 74 SDYFDELYRYAEELIKKGLAYVDELTPEEIREYRGTLTDPGKNSPYRDRSIEENLA-LFEKMRDGKFKEGKAILRAKIDM 152 (522)
T ss_pred cccHHHHHHHHHHHHHcCCEEeecCCHHHHHHhhhhcccCCCCCcccCCCHHHHHH-HHHHHhcCcccCCCeEEEEeCcC
Confidence 9871 11122211111 000 011111111 111111110
Q ss_pred ---CCC----------------cc-c-chhh---HHhhcccccccCcEEEecccchhhHHHHHHhhhhcCCC-ceeEEec
Q psy5948 170 ---HPL----------------LS-G-LLYP---GLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYA-KRIHFMN 224 (549)
Q Consensus 170 ---~~~----------------~~-~-~~YP---~LqAaDil~~~~d~~~gG~DQ~~~~~~~r~l~~~~~~~-~~~~l~~ 224 (549)
++. .| . ..|| +..+.|-...++++++.|.|+..|..+-.-+...++.. .|..+..
T Consensus 153 ~~~n~~~rD~V~~Ri~~~~h~~~gdk~~iyPtYdfa~~vdD~l~gITHviRg~E~~~nt~~Y~~~~~~l~~~~~P~~~~F 232 (522)
T TIGR00440 153 ASPFPVMRDPVAYRIKFAPHHQTGTKWCIYPMYDFTHCISDAMENITHSLCTLEFQDNRRLYDWVLDNIHIFPRPAQYEF 232 (522)
T ss_pred CCCCceEeeeeEEEEecCCCCCCCCCeeEEeCcCCceeehhccCCCceEeecHhhhhcHHHHHHHHHhcCccCCCceEEE
Confidence 000 01 0 1144 45566666789999999999988887777777666543 2322211
Q ss_pred ccccCCCCCCccCCCCC
Q psy5948 225 PMVPGLAGGKMSSSEED 241 (549)
Q Consensus 225 plL~~l~G~KMSKS~~~ 241 (549)
. -.+++|.||||+...
T Consensus 233 ~-rln~~~~kLSKRk~~ 248 (522)
T TIGR00440 233 S-RLNLEGTVLSKRKLA 248 (522)
T ss_pred E-EECCCCCCcccccch
Confidence 1 267799999999763
No 74
>PLN02907 glutamate-tRNA ligase
Probab=98.08 E-value=1.3e-05 Score=91.76 Aligned_cols=174 Identities=11% Similarity=0.075 Sum_probs=102.1
Q ss_pred EEEee--cCCCccchhhhHHHHHHHHHH--HcCCcEEEEEeCceeeecCCCChhHHHHHHHHHHHHHHHHHHHccCCCCC
Q psy5948 50 IYWGT--ATTGRPHIAYFVPMSKIADFL--RAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPIS 125 (549)
Q Consensus 50 v~~Gi--~PTG~lHIGn~~~~~~l~~l~--~~G~~v~ilIaD~~a~~~~~~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~ 125 (549)
|.+=| .|||.|||||...++ +.++. +.|.++++.+-| +++ .+...++.+.+ ...+.++|++++
T Consensus 214 v~tRFaPsPtG~LHiG~ar~al-~n~~~Ar~~~G~~iLR~eD--------Tdp---~r~~~e~~~~I-~~dl~wLG~~~d 280 (722)
T PLN02907 214 VCTRFPPEPSGYLHIGHAKAAL-LNQYFARRYKGKLIVRFDD--------TNP---SKESDEFVENI-LKDIETLGIKYD 280 (722)
T ss_pred eEEeeCCCCCCcccHHHHHHHH-HHHHHHHHhCCEEEEEecC--------CCC---CcCChHHHHHH-HHHHHHcCCCCC
Confidence 44444 567999999999864 23332 568899999988 222 23455666654 468899999998
Q ss_pred eeEEEEcccc-ccccccHHHHHHHHcc----cCHHHHHH-------------------hhHHHhhhc-------------
Q psy5948 126 KLKFVKGTDY-QLSKEYTLDVYRLSSV----ITEHDAKK-------------------AGAEVVKQV------------- 168 (549)
Q Consensus 126 k~~i~~qS~~-~~~~~~~~~~~~l~~~----~t~~~~k~-------------------~~~~~~~~~------------- 168 (549)
.+++||+. ....++...+.+.+.. .+..+++. ..++.|+.+
T Consensus 281 --~~~~qS~r~~~y~~~a~~Li~~G~aY~~~~~~~~~~~~~~~~~~~~~R~~~~ee~~~~~~~m~~g~~~~~~~~lR~k~ 358 (722)
T PLN02907 281 --AVTYTSDYFPQLMEMAEKLIKEGKAYVDDTPREQMRKERMDGIESKCRNNSVEENLRLWKEMIAGSERGLQCCVRGKL 358 (722)
T ss_pred --CcccccccHHHHHHHHHHHHHcCCeeecCCCHHHHHHHHhcCCCCCccCCCHHHHHHHHHHHhcccccCCCeEEEEEc
Confidence 56899987 1111222222111100 01111100 000001100
Q ss_pred ----cCCCcc---------------------cchhhHHhhcccccccCcEEEecccchhhHHHHHHhhhhcCCCceeEEe
Q psy5948 169 ----EHPLLS---------------------GLLYPGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFM 223 (549)
Q Consensus 169 ----~~~~~~---------------------~~~YP~LqAaDil~~~~d~~~gG~DQ~~~~~~~r~l~~~~~~~~~~~l~ 223 (549)
.+.++. --+|-+.-+.|....++++++.|.|+..+...-.-+.+.+|..+|....
T Consensus 359 d~~~~n~~~~D~v~~R~~~~~h~~~gd~~~~~PtY~fa~~vdD~~~gIThvlRg~e~~~~t~~q~~l~~~lg~~~p~~~~ 438 (722)
T PLN02907 359 DMQDPNKSLRDPVYYRCNPTPHHRIGSKYKVYPTYDFACPFVDALEGVTHALRSSEYHDRNAQYYRILEDMGLRKVHIWE 438 (722)
T ss_pred ccCCCCCCcccCEEEEecCCcccccCCccceeeccCCceEEEcccCCCceEeecHhhhhChHHHHHHHHHcCCCCCeeEE
Confidence 000111 1133344455566689999999999988888888888999987764333
Q ss_pred cccccCCCCCCccCCC
Q psy5948 224 NPMVPGLAGGKMSSSE 239 (549)
Q Consensus 224 ~plL~~l~G~KMSKS~ 239 (549)
... .+++|.||||+.
T Consensus 439 f~~-l~~~~~~lSKR~ 453 (722)
T PLN02907 439 FSR-LNFVYTLLSKRK 453 (722)
T ss_pred EEE-EcCCCccccccc
Confidence 333 478899999996
No 75
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=98.00 E-value=2.5e-05 Score=76.76 Aligned_cols=157 Identities=14% Similarity=0.036 Sum_probs=81.6
Q ss_pred CCceEEEeecCCCccchhhhHHHH---HHHHHHH-cCCcEEEEEe-Cceee-ecC--CCChhHHHHHHHHHHHHHHHHHH
Q psy5948 46 RDLKIYWGTATTGRPHIAYFVPMS---KIADFLR-AGCEVTILFA-DLHAY-LDN--MKAPWELLALRTKYYEESIKAML 117 (549)
Q Consensus 46 ~~~~v~~Gi~PTG~lHIGn~~~~~---~l~~l~~-~G~~v~ilIa-D~~a~-~~~--~~~~~~~~~~~~~~~~~~i~~~l 117 (549)
+.....||--|-|.+||||+.... .+.++++ .|++|.+..+ |.|.. +-. .....+..+....+.+ .+...+
T Consensus 20 ~~~~y~~gpt~y~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~~g~~p~e~~~~~~~-~f~~~~ 98 (213)
T cd00672 20 LVTMYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREEGLSWKEVADYYTK-EFFEDM 98 (213)
T ss_pred CceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHHcCCCHHHHHHHHHH-HHHHHH
Confidence 344557899999999999987643 3555554 5988877665 33321 000 0000112233333333 345677
Q ss_pred HccCCCC-CeeEEEEccccccccccHHHHHHHHcccCHHHHHHhhHHHhhhccCCCcccchhhHHhhcccccccCcEEEe
Q psy5948 118 ESIDVPI-SKLKFVKGTDYQLSKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFG 196 (549)
Q Consensus 118 ~a~Gldp-~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~k~~~~~~~~~~~~~~~~~~~YP~LqAaDil~~~~d~~~g 196 (549)
.++|+.+ +. +.+- | -..| ..||...+-...|+..+
T Consensus 99 ~~l~i~~~d~--~~rt--W------------h~ec----------------------------~am~~~~lg~~~dih~~ 134 (213)
T cd00672 99 KALNVLPPDV--VPRV--W------------HIEC----------------------------SAMAMKYLGETFDIHGG 134 (213)
T ss_pred HHcCCCCCCc--ceee--h------------hHHH----------------------------HHHHHHHcCCCccEEee
Confidence 7888886 41 1111 2 1111 12222333344677889
Q ss_pred cccchh-hHHHHHHhhhh-cCCCceeEEecccccCCCCCCccCCCCCCeeeccC
Q psy5948 197 GVDQRK-IFTLAEKYLPQ-LGYAKRIHFMNPMVPGLAGGKMSSSEEDSKIDLLD 248 (549)
Q Consensus 197 G~DQ~~-~~~~~r~l~~~-~~~~~~~~l~~plL~~l~G~KMSKS~~~s~I~L~D 248 (549)
|.|... |++.-.-.... .+...+-.+.+.-+..++|+|||||.|+ .|.+.|
T Consensus 135 G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~~~v~~~g~KMSKs~Gn-~v~~~d 187 (213)
T cd00672 135 GVDLIFPHHENEIAQSEAATGKPFARYWLHTGHLTIDGEKMSKSLGN-FITVRD 187 (213)
T ss_pred cCCCCcChHHHHHHHHHHHhCCCCCcEEEEEEEEeccCcchhhcCCC-ccCHHH
Confidence 999854 33322211121 1321111233335667899999999996 666544
No 76
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=97.91 E-value=4e-05 Score=79.62 Aligned_cols=58 Identities=24% Similarity=0.103 Sum_probs=38.2
Q ss_pred cCcEEEecccch-hhHHHHHHhhhhcCCC-ce-eEEecccccCCCCCCccCCCCCCeeeccC
Q psy5948 190 KVDAQFGGVDQR-KIFTLAEKYLPQLGYA-KR-IHFMNPMVPGLAGGKMSSSEEDSKIDLLD 248 (549)
Q Consensus 190 ~~d~~~gG~DQ~-~~~~~~r~l~~~~~~~-~~-~~l~~plL~~l~G~KMSKS~~~s~I~L~D 248 (549)
..|+.++|.||. .|+..-.-....++.. ++ -.+.+.++...+|+|||||.+| .|++.|
T Consensus 226 ~~di~~~G~D~~~~h~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~KmSKS~gn-~v~~~d 286 (312)
T cd00668 226 PADWHLIGKDILRGWANFWITMLVALFGEIPPKNLLVHGFVLDEGGQKMSKSKGN-VIDPSD 286 (312)
T ss_pred CceEEEEecchhhhHHHHHHHHHHHhcCCCCcceeEECcEEEcCCCccccccCCC-cCCHHH
Confidence 478999999998 6665433333333322 22 3345677776666999999996 777644
No 77
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=97.90 E-value=6.9e-05 Score=82.15 Aligned_cols=79 Identities=16% Similarity=0.247 Sum_probs=46.3
Q ss_pred CCceEE-EeecCCCccchhhhHHHH---HHHHHH-HcCCcEEEEEe-Cceee-ecC--CCChhHHHHHHHHHHHHHHHHH
Q psy5948 46 RDLKIY-WGTATTGRPHIAYFVPMS---KIADFL-RAGCEVTILFA-DLHAY-LDN--MKAPWELLALRTKYYEESIKAM 116 (549)
Q Consensus 46 ~~~~v~-~Gi~PTG~lHIGn~~~~~---~l~~l~-~~G~~v~ilIa-D~~a~-~~~--~~~~~~~~~~~~~~~~~~i~~~ 116 (549)
+..++| ||-.|.|.+||||.+++. .+.+++ ..|++|++..+ |.|.- +-. .....++.+....+.+ .+...
T Consensus 22 ~~v~~yvcgPtvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~~g~~~~e~~~~~~~-~f~~~ 100 (463)
T PRK00260 22 GKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANEEGESIKELTERYIA-AFHED 100 (463)
T ss_pred CcceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHH-HHHHH
Confidence 445665 999999999999988653 245554 45999988766 33311 000 0000112333444444 35678
Q ss_pred HHccCC-CCC
Q psy5948 117 LESIDV-PIS 125 (549)
Q Consensus 117 l~a~Gl-dp~ 125 (549)
+.++|+ .|+
T Consensus 101 ~~~Lgi~~~d 110 (463)
T PRK00260 101 MDALNVLPPD 110 (463)
T ss_pred HHHcCCCCCC
Confidence 889999 454
No 78
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=97.87 E-value=0.0001 Score=81.25 Aligned_cols=85 Identities=14% Similarity=0.081 Sum_probs=57.2
Q ss_pred HHHHHHHHh--cCCceEEEeecCCCccchhhhHHHHHHHHH--HHcCCcEEEEEeCceeeecCCCChhHHHHHHHHHHHH
Q psy5948 36 EDRLNVILK--ERDLKIYWGTATTGRPHIAYFVPMSKIADF--LRAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEE 111 (549)
Q Consensus 36 ~~~L~~~l~--~~~~~v~~Gi~PTG~lHIGn~~~~~~l~~l--~~~G~~v~ilIaD~~a~~~~~~~~~~~~~~~~~~~~~ 111 (549)
.+.+.+.++ +.+.+.=..=.|||.|||||+..++. .++ .+.|..+++.+-| .++ .+...++.+.
T Consensus 38 ~~~~~~~~~~~~gkv~tRFaPsPtG~LHiGharaall-n~~~Ar~~gG~~iLRiED--------TDp---~r~~~e~~~~ 105 (574)
T PTZ00437 38 PELLEKHEAVTGGKPYFRFPPEPNGFLHIGHAKSMNL-NFGSARAHGGKCYLRYDD--------TNP---ETEEQVYIDA 105 (574)
T ss_pred HHHHHHHhcccCCcEEEEeCCCCCCcccHHHHHHHHH-HHHHHHHhCCEEEEEECC--------CCc---cccChHHHHH
Confidence 556666554 23444445556789999999998643 222 2568899999988 222 2345566665
Q ss_pred HHHHHHHccCCCCCeeEEEEcccc
Q psy5948 112 SIKAMLESIDVPISKLKFVKGTDY 135 (549)
Q Consensus 112 ~i~~~l~a~Gldp~k~~i~~qS~~ 135 (549)
+ ...|.++|++++ .+++||+.
T Consensus 106 I-~~dL~wLGi~~D--~~~~qS~y 126 (574)
T PTZ00437 106 I-MEMVKWMGWKPD--WVTFSSDY 126 (574)
T ss_pred H-HHHHHHcCCCCC--CCCcCchh
Confidence 4 468899999998 46688887
No 79
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=97.79 E-value=0.00012 Score=84.03 Aligned_cols=73 Identities=16% Similarity=0.161 Sum_probs=49.9
Q ss_pred eEEEee--cCCCccchhhhHHHHHHHHHH--HcCCcEEEEEeCceeeecCCCChhHHHHHHHHHHHHHHHHHHHccCCCC
Q psy5948 49 KIYWGT--ATTGRPHIAYFVPMSKIADFL--RAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPI 124 (549)
Q Consensus 49 ~v~~Gi--~PTG~lHIGn~~~~~~l~~l~--~~G~~v~ilIaD~~a~~~~~~~~~~~~~~~~~~~~~~i~~~l~a~Gldp 124 (549)
.|.+=| .|||.|||||...++. .++. +.|.++++.+-| +++ .+...++.+.+ ...+.++|+++
T Consensus 31 ~v~tRFaPsPtG~lHiGhar~all-n~~~A~~~~G~~~LR~eD--------Td~---~r~~~e~~~~I-~~dl~wLG~~w 97 (771)
T PRK14703 31 RVVTRFPPEPNGYLHIGHAKSILL-NFGIARDYGGRCHLRMDD--------TNP---ETEDTEYVEAI-KDDVRWLGFDW 97 (771)
T ss_pred ceEEEeCcCCCCcccHHHHHHHHH-HHHHHHHhCCEEEEEeCC--------CCC---CcCChHHHHHH-HHHHHHcCCCC
Confidence 344444 6679999999998642 2322 568899999988 222 23455666654 46889999998
Q ss_pred CeeEEEEcccc
Q psy5948 125 SKLKFVKGTDY 135 (549)
Q Consensus 125 ~k~~i~~qS~~ 135 (549)
+. .+++||+.
T Consensus 98 d~-~~~~qS~~ 107 (771)
T PRK14703 98 GE-HLYYASDY 107 (771)
T ss_pred CC-CceEeecC
Confidence 63 26889987
No 80
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=97.61 E-value=0.00043 Score=75.93 Aligned_cols=79 Identities=10% Similarity=0.053 Sum_probs=45.3
Q ss_pred CCceEEEeecCCCccchhhhHHHH---HHHHHH-HcCCcEEEEEe-Cceee-ecC--CCChhHHHHHHHHHHHHHHHHHH
Q psy5948 46 RDLKIYWGTATTGRPHIAYFVPMS---KIADFL-RAGCEVTILFA-DLHAY-LDN--MKAPWELLALRTKYYEESIKAML 117 (549)
Q Consensus 46 ~~~~v~~Gi~PTG~lHIGn~~~~~---~l~~l~-~~G~~v~ilIa-D~~a~-~~~--~~~~~~~~~~~~~~~~~~i~~~l 117 (549)
+.....||..|.+.+||||.++++ .+.+++ ..|++|.+..+ |.|.- +-. .....+..+....+.+ .+...+
T Consensus 21 ~v~~yvcgptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~g~~~~e~a~~~~~-~f~~dl 99 (465)
T TIGR00435 21 KVKMYVCGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRARENGESVYEVSERFIE-AYFEDM 99 (465)
T ss_pred cceEEEecCccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHcCCCHHHHHHHHHH-HHHHHH
Confidence 334558999999999999988653 245554 45999876665 43321 000 0000112223333333 345678
Q ss_pred HccCCCCC
Q psy5948 118 ESIDVPIS 125 (549)
Q Consensus 118 ~a~Gldp~ 125 (549)
.++|+.++
T Consensus 100 ~~LgI~~d 107 (465)
T TIGR00435 100 KALNVLPP 107 (465)
T ss_pred HHhCCCCC
Confidence 88999755
No 81
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=97.58 E-value=0.00053 Score=73.06 Aligned_cols=67 Identities=24% Similarity=0.206 Sum_probs=41.5
Q ss_pred HHhhcccccccCcEEEecccchh-hHHHHHHhhhh-cCCCc-eeEEecccccCCCCCCccCCCCCCeeecc
Q psy5948 180 GLQALDEEYLKVDAQFGGVDQRK-IFTLAEKYLPQ-LGYAK-RIHFMNPMVPGLAGGKMSSSEEDSKIDLL 247 (549)
Q Consensus 180 ~LqAaDil~~~~d~~~gG~DQ~~-~~~~~r~l~~~-~~~~~-~~~l~~plL~~l~G~KMSKS~~~s~I~L~ 247 (549)
..|+..++--..|+--||.|-.. |++--.-.... .+..+ +-...+..+...+|+|||||.+| .|.+.
T Consensus 204 sam~~~~lg~~~DIH~GG~DL~FPHHeneiaq~~a~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN-~i~~~ 273 (384)
T PRK12418 204 SAIALNRLGSGFDIQGGGSDLIFPHHEFSAAHAEAATGERRFARHYVHAGMIGLDGEKMSKSRGN-LVFVS 273 (384)
T ss_pred HHHHHHHcCCCcccccCccccccchhHhHHHHHHHhcCCCCcceEEEECCEECCCCCcccCcCCC-cCCHH
Confidence 66777776677899899999854 44322111112 23211 11344555678899999999996 56553
No 82
>KOG1149|consensus
Probab=97.47 E-value=0.00011 Score=77.39 Aligned_cols=65 Identities=14% Similarity=0.161 Sum_probs=49.4
Q ss_pred hhhHHhhcccccccCcEEEecccchhhHHHHHHhhhhcCCCceeEEecccccCCCCCCccCCCCC
Q psy5948 177 LYPGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGGKMSSSEED 241 (549)
Q Consensus 177 ~YP~LqAaDil~~~~d~~~gG~DQ~~~~~~~r~l~~~~~~~~~~~l~~plL~~l~G~KMSKS~~~ 241 (549)
+|-+.-..|.-++++++|+.|+.......-...+.+.+|+.||-..|.|+|...+|.|.||..+.
T Consensus 224 TYHfAnVVDDh~M~IsHViRGeEWlpST~KH~lLYkAfgW~pPkFaHlpLl~n~d~sKLSKRqgD 288 (524)
T KOG1149|consen 224 TYHFANVVDDHLMGISHVIRGEEWLPSTLKHILLYKAFGWQPPKFAHLPLLLNPDGSKLSKRQGD 288 (524)
T ss_pred ceeeeeeecchhcchhheeecchhccccHHHHHHHHHhCCCCCceeeeeeeecCCcchhhhhcCc
Confidence 45455555555567788888888655444444466889999998899999999999999999885
No 83
>PLN02946 cysteine-tRNA ligase
Probab=97.45 E-value=0.0007 Score=75.22 Aligned_cols=65 Identities=15% Similarity=-0.001 Sum_probs=41.3
Q ss_pred HHhhcccccccCcEEEecccch-hhHHHHHHhhhh-cCCCc-eeEEecccccCCCCCCccCCCCCCeeec
Q psy5948 180 GLQALDEEYLKVDAQFGGVDQR-KIFTLAEKYLPQ-LGYAK-RIHFMNPMVPGLAGGKMSSSEEDSKIDL 246 (549)
Q Consensus 180 ~LqAaDil~~~~d~~~gG~DQ~-~~~~~~r~l~~~-~~~~~-~~~l~~plL~~l~G~KMSKS~~~s~I~L 246 (549)
..|+...+-...||--||.|.. +|++--..-... .+... .+-+++-+|. ++|+|||||.+| .|.+
T Consensus 267 SaMs~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~a~yW~H~G~v~-~~G~KMSKSlGN-~itl 334 (557)
T PLN02946 267 SAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACCDSNISYWIHNGFVT-VDSEKMSKSLGN-FFTI 334 (557)
T ss_pred HHHHHHHcCCCeeEeccccccCCCcccchHHHHHHHhCCCCCceeeEeeEEE-eCCCCcCCcCCC-cCCH
Confidence 6777787777889999999974 354322111111 12111 1345666776 899999999996 5555
No 84
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=97.41 E-value=0.00089 Score=71.85 Aligned_cols=66 Identities=23% Similarity=0.190 Sum_probs=39.8
Q ss_pred HHhhcccccccCcEEEecccchh-hHHHHHHhhhh-cCCCc-eeEEecccccCCCCCCccCCCCCCeeec
Q psy5948 180 GLQALDEEYLKVDAQFGGVDQRK-IFTLAEKYLPQ-LGYAK-RIHFMNPMVPGLAGGKMSSSEEDSKIDL 246 (549)
Q Consensus 180 ~LqAaDil~~~~d~~~gG~DQ~~-~~~~~r~l~~~-~~~~~-~~~l~~plL~~l~G~KMSKS~~~s~I~L 246 (549)
..|+..++--..|+..||.|-.. |++.-+--... .+..+ +-...+.-+...+|+|||||.+| .|.+
T Consensus 231 sam~~~~lg~~~Dih~GG~DLifpHheneiaq~~A~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN-~i~~ 299 (411)
T TIGR03447 231 SAIATNRLGAGFDIQGGGSDLIFPHHEFSAAHAEAATGVRRMARHYVHAGMIGLDGEKMSKSLGN-LVFV 299 (411)
T ss_pred HHHHHHHcCCceecccCcccccccchHhHHHHHHHhcCCCCcceEEEECCEECcCCCCccCcCCC-CCCH
Confidence 56666666667888889999754 44322111111 23211 11334555668899999999996 5555
No 85
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.22 E-value=0.0011 Score=71.40 Aligned_cols=196 Identities=16% Similarity=0.122 Sum_probs=98.6
Q ss_pred ceE-EEeecCCCccchhhhHHHH---HHHHHHH-cCCcEEEEEeCceeeecCC------CChhHHHHHHHHHHHHHHHHH
Q psy5948 48 LKI-YWGTATTGRPHIAYFVPMS---KIADFLR-AGCEVTILFADLHAYLDNM------KAPWELLALRTKYYEESIKAM 116 (549)
Q Consensus 48 ~~v-~~Gi~PTG~lHIGn~~~~~---~l~~l~~-~G~~v~ilIaD~~a~~~~~------~~~~~~~~~~~~~~~~~i~~~ 116 (549)
.++ .||..+--..||||.++++ .++++++ .|+. +.++-+.|.+=+.. .+ .+..+....|... +...
T Consensus 23 V~mYvCGpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~-V~yV~NiTDIDDKIi~rA~~~g-~~~~ev~~~~i~~-f~~D 99 (464)
T COG0215 23 VKMYVCGPTVYDYAHIGHARTYVVFDVLRRYLRYLGYK-VTYVRNITDIDDKIINRAREEG-LSIREVAERYIAA-FFED 99 (464)
T ss_pred EEEEecCCccCCccccccCcceehHHHHHHHHHHhCCe-EEEEeccccccHHHHHHHHHhC-CCHHHHHHHHHHH-HHHH
Confidence 444 6888888889999988643 3555554 5887 55666665541100 00 1223344444443 4467
Q ss_pred HHccCCC-CCe----------------------eEEEE-ccccccccccHHHHHHHHcccCHHH-----------HHH--
Q psy5948 117 LESIDVP-ISK----------------------LKFVK-GTDYQLSKEYTLDVYRLSSVITEHD-----------AKK-- 159 (549)
Q Consensus 117 l~a~Gld-p~k----------------------~~i~~-qS~~~~~~~~~~~~~~l~~~~t~~~-----------~k~-- 159 (549)
+.++|+- |+. ..+.. +-++++....+.+...|+..-...+ .|+
T Consensus 100 ~~aL~v~~p~~~PraTe~I~~iI~~I~~LiekG~AY~~~~G~VYFdv~~f~~YG~LS~~~~le~l~~gar~~~~~~Krnp 179 (464)
T COG0215 100 MDALNVLPPDIEPRATEHIDEIIEFIEKLIEKGYAYVADDGDVYFDVSKFKDYGKLSGRDSLEELQAGARVEVDEEKRNP 179 (464)
T ss_pred HHHhCCCCCcccCcHhhCHHHHHHHHHHHHHCCceEEecCCcEEEecccchhhHhhcCCCChhHHhhccccccccccCCc
Confidence 7788884 331 01222 1134333333334444543211111 011
Q ss_pred ---hhHHHhhhccC---CCccc-----chhhHHhhcccccccCcEEEecccc-hhhHHHHHHhhhhc-CCCc--eeEEec
Q psy5948 160 ---AGAEVVKQVEH---PLLSG-----LLYPGLQALDEEYLKVDAQFGGVDQ-RKIFTLAEKYLPQL-GYAK--RIHFMN 224 (549)
Q Consensus 160 ---~~~~~~~~~~~---~~~~~-----~~YP~LqAaDil~~~~d~~~gG~DQ-~~~~~~~r~l~~~~-~~~~--~~~l~~ 224 (549)
.+....+.++. .++|. =+-...|+...|--..||--||.|- .+|++--.--.+.. |.++ .+=+|+
T Consensus 180 ~DFvLWK~sk~gEp~W~SPWG~GRPGWHIECSaM~~~~LG~~~DIHgGG~DLiFPHHENEiAQsea~~g~~~~a~yWmH~ 259 (464)
T COG0215 180 LDFVLWKAAKPGEPSWDSPWGKGRPGWHIECSAMSTKYLGETFDIHGGGSDLIFPHHENEIAQSEAATGVKPFAKYWMHN 259 (464)
T ss_pred hhheeeccCCCCCCCCCCCCCCCCCchhHHHHHHHHHHhCCCcceecCcccccCCCcccHHHHHHhhhCCCcceeEeEEc
Confidence 00000111111 11221 1223678888888889999999996 45664211111111 2122 223343
Q ss_pred ccccCCCCCCccCCCCCCeeeccC
Q psy5948 225 PMVPGLAGGKMSSSEEDSKIDLLD 248 (549)
Q Consensus 225 plL~~l~G~KMSKS~~~s~I~L~D 248 (549)
- +...+|+|||||.+| -|.+.|
T Consensus 260 G-~l~i~geKMSKSLGN-fiti~d 281 (464)
T COG0215 260 G-FLNIDGEKMSKSLGN-FITVRD 281 (464)
T ss_pred c-eeeecCcCcccccCC-eeEHHH
Confidence 3 456789999999996 666654
No 86
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=97.20 E-value=0.001 Score=68.27 Aligned_cols=66 Identities=17% Similarity=0.036 Sum_probs=35.8
Q ss_pred HHhhcccccccCcEEEecccch-hhHHHHHHhhhhcCCCc--eeEEecccccCCCCCCccCCCCCCeeecc
Q psy5948 180 GLQALDEEYLKVDAQFGGVDQR-KIFTLAEKYLPQLGYAK--RIHFMNPMVPGLAGGKMSSSEEDSKIDLL 247 (549)
Q Consensus 180 ~LqAaDil~~~~d~~~gG~DQ~-~~~~~~r~l~~~~~~~~--~~~l~~plL~~l~G~KMSKS~~~s~I~L~ 247 (549)
..|+...+-...|+--||.|-. +|++--+-..+....++ .+-+++-+| ..+|+|||||.+| .|.+.
T Consensus 196 sam~~~~lG~~~DIH~GG~DL~FPHHENEiAqs~a~~g~~~a~~W~H~g~l-~~~g~KMSKSlgN-~~~i~ 264 (300)
T PF01406_consen 196 SAMSMKYLGDTFDIHGGGIDLIFPHHENEIAQSEAATGKPFANYWMHNGHL-NVDGEKMSKSLGN-FITIR 264 (300)
T ss_dssp HHHHHHHHTTSEEEEEEEGGGTTTHHHHHHHHHHHHHSS-SEEEEEEE--E-EETTCE--TTTT----BHH
T ss_pred HHHHHHHcCCCceEEccccccCCCCccchHHHHHHhhCchHHHHHHHHHHH-hhcCccccccCCC-EEEHH
Confidence 5667677666788889999984 46643332333222222 233454443 4589999999986 66653
No 87
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=97.14 E-value=0.0026 Score=69.94 Aligned_cols=68 Identities=19% Similarity=0.100 Sum_probs=40.8
Q ss_pred HHhhcccccccCcEEEecccch-hhHHHHHHhhhhc-CCCceeEEecccccCCCCCCccCCCCCCeeeccC
Q psy5948 180 GLQALDEEYLKVDAQFGGVDQR-KIFTLAEKYLPQL-GYAKRIHFMNPMVPGLAGGKMSSSEEDSKIDLLD 248 (549)
Q Consensus 180 ~LqAaDil~~~~d~~~gG~DQ~-~~~~~~r~l~~~~-~~~~~~~l~~plL~~l~G~KMSKS~~~s~I~L~D 248 (549)
..|+...+--.+|+..||.|-. +|++--.-..... +...+-...+.-+...+|+|||||.|| .|.+.|
T Consensus 223 saMs~~~lg~~~DIH~GG~DliFPHHeneiAqs~a~~g~~~~~~w~h~g~l~~~g~KMSKSlGN-~itl~d 292 (490)
T PRK14536 223 SAMSMKYLGEQCDIHIGGVDHIRVHHTNEIAQCEAATGKPWVRYWLHHEFLLMNKGKMSKSAGQ-FLTLSS 292 (490)
T ss_pred HHHHHHHcCCceeEEeccccCCCcchhhHHHHHHHhcCCCcceEEEEcCEEeecCccccccCCC-cccHHH
Confidence 5566666666789999999974 4553322222222 322121233444456789999999996 676643
No 88
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=96.94 E-value=0.0038 Score=70.41 Aligned_cols=76 Identities=16% Similarity=0.231 Sum_probs=43.2
Q ss_pred CceE-EEeecCCCccchhhhHHHH---HHHHHHH-cCCcEEEEEeCceeeecCCC------ChhHHHHHHHHHHHHHHHH
Q psy5948 47 DLKI-YWGTATTGRPHIAYFVPMS---KIADFLR-AGCEVTILFADLHAYLDNMK------APWELLALRTKYYEESIKA 115 (549)
Q Consensus 47 ~~~v-~~Gi~PTG~lHIGn~~~~~---~l~~l~~-~G~~v~ilIaD~~a~~~~~~------~~~~~~~~~~~~~~~~i~~ 115 (549)
..++ .||..+=..+||||.++++ .++++++ .|++|.++.+ .+.+ ++.- ...+..+....|.+ .+..
T Consensus 248 ~V~mYvCGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~N-iTD~-DDKII~~A~e~G~sp~ela~~y~~-~F~~ 324 (699)
T PRK14535 248 NVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRN-ITDI-DDKIIARAAENGETIGELTARFIQ-AMHE 324 (699)
T ss_pred ceEEEecCCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeC-Cccc-chHHHHHHHHcCCCHHHHHHHHHH-HHHH
Confidence 3444 6788888889999998753 3555554 5888876554 2222 1100 00112233334433 3456
Q ss_pred HHHccCCCCC
Q psy5948 116 MLESIDVPIS 125 (549)
Q Consensus 116 ~l~a~Gldp~ 125 (549)
++.++|+.+.
T Consensus 325 d~~~LnI~~p 334 (699)
T PRK14535 325 DADALGVLRP 334 (699)
T ss_pred HHHHcCCCCC
Confidence 7788998765
No 89
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=96.91 E-value=0.0022 Score=70.26 Aligned_cols=67 Identities=18% Similarity=0.113 Sum_probs=39.4
Q ss_pred HHhhcccccccCcEEEecccchh-hHHHHHHhhhhc-CCCc-eeEEecccccCCCCCCccCCCCCCeeeccC
Q psy5948 180 GLQALDEEYLKVDAQFGGVDQRK-IFTLAEKYLPQL-GYAK-RIHFMNPMVPGLAGGKMSSSEEDSKIDLLD 248 (549)
Q Consensus 180 ~LqAaDil~~~~d~~~gG~DQ~~-~~~~~r~l~~~~-~~~~-~~~l~~plL~~l~G~KMSKS~~~s~I~L~D 248 (549)
..|+...+--..|+..||.|... |++--+-..... |... .+-+++-++ .++|+|||||.|+ .|.+.|
T Consensus 223 sam~~~~lg~~~DIH~GG~DliFPHHene~Aqs~a~~g~~~~~~W~H~g~l-~~~g~KMSKSlGN-~i~l~d 292 (481)
T PRK14534 223 AAMNLEYFKSTLDIHLGGVDHIGVHHINEIAIAECYLNKKWCDMFVHGEFL-IMEYEKMSKSNNN-FITIKD 292 (481)
T ss_pred HHHHHHHcCCcceEEecccccCCCcchhHHHHHhhhcCCCcceEEEEecEE-EecCceecccCCC-cccHHH
Confidence 34555555556799999999854 544322222222 3222 233444444 4689999999996 677643
No 90
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.90 E-value=0.0042 Score=69.60 Aligned_cols=65 Identities=26% Similarity=0.260 Sum_probs=46.6
Q ss_pred ccCcEE--EecccchhhHHHHHHhhhhcCCCce--eEEe--cccccCCCCCCccCCCCCCeeeccCCHHHHH
Q psy5948 189 LKVDAQ--FGGVDQRKIFTLAEKYLPQLGYAKR--IHFM--NPMVPGLAGGKMSSSEEDSKIDLLDAPALVK 254 (549)
Q Consensus 189 ~~~d~~--~gG~DQ~~~~~~~r~l~~~~~~~~~--~~l~--~plL~~l~G~KMSKS~~~s~I~L~Dsp~~i~ 254 (549)
.++|.. +.|.||.+|+..-+.+....++.++ ..++ .-++.+-+|.||||..|+ .|.|.|=-+++.
T Consensus 332 ~~~d~~IyV~gadq~~~~~ql~~~l~~~g~~~~~~~~~h~~~~l~~~~~g~kmStR~G~-~vtl~dllde~~ 402 (577)
T COG0018 332 RGFDKLIYVLGADQHGHFKQLKAVLELLGYGPDKEVLLHQGVGLVRGGEGVKMSTRAGN-VVTLDDLLDEAG 402 (577)
T ss_pred cCCCEEEEEeCCcchhHHHHHHHHHHHhcCCCccceEEEEEEeeeECCCCccccccCCc-eEEHHHHHHHHH
Confidence 355544 4899999999888887788887544 2233 334555567899999996 899988666555
No 91
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=96.21 E-value=0.0084 Score=63.57 Aligned_cols=66 Identities=29% Similarity=0.237 Sum_probs=43.4
Q ss_pred ccCcEE--EecccchhhHHHHHHhhhhcCCC----ceeEEecccccCCCCC-CccCCCCCCeeeccCCHHHHHH
Q psy5948 189 LKVDAQ--FGGVDQRKIFTLAEKYLPQLGYA----KRIHFMNPMVPGLAGG-KMSSSEEDSKIDLLDAPALVKK 255 (549)
Q Consensus 189 ~~~d~~--~gG~DQ~~~~~~~r~l~~~~~~~----~~~~l~~plL~~l~G~-KMSKS~~~s~I~L~Dsp~~i~k 255 (549)
+++|.. ++|.||..|+.--..+...+|+. +..++..-++.+.+|+ |||+..|+ .|.|.|=-++..+
T Consensus 236 ~~~d~~iyV~~~~q~~hf~~l~~~l~~lg~~~~~~~~~H~~~g~vl~~~gk~~mstR~G~-~i~l~dllde~~~ 308 (354)
T PF00750_consen 236 YGFDKIIYVVGADQKGHFKQLFAILEALGYDPEAVKLQHVSFGVVLLKDGKVKMSTRKGN-VITLDDLLDEAVE 308 (354)
T ss_dssp SS-SEEEEEEEGGGHHHHHHHHHHHHHTT-HHHHCTEEEEEE-EEEETTBEESS-TTTTS-STBHHHHHHHHHH
T ss_pred hccccEEEEecCchhhHHHHHHHHHHHhCCCCCCCEEEEEEEEEEEcCCCCccccCCCCC-ceEHHHHHHHHHH
Confidence 455544 48999999999888888888872 2233444556667887 99999986 8888663333333
No 92
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=95.31 E-value=0.072 Score=46.09 Aligned_cols=40 Identities=10% Similarity=0.032 Sum_probs=30.0
Q ss_pred EEEeecCCCccchhhhHHHHHHHHHHHcCCcEEEEEeCceeeec
Q psy5948 50 IYWGTATTGRPHIAYFVPMSKIADFLRAGCEVTILFADLHAYLD 93 (549)
Q Consensus 50 v~~Gi~PTG~lHIGn~~~~~~l~~l~~~G~~v~ilIaD~~a~~~ 93 (549)
+++|-.+ +.+|+||+..+..+..+ +..+++.++|.++...
T Consensus 2 ~~~~G~F-dp~H~GH~~l~~~a~~~---~d~~i~~i~~~~~~~~ 41 (105)
T cd02156 2 ARFPGEP-GYLHIGHAKLICRAKGI---ADQCVVRIDDNPPVKV 41 (105)
T ss_pred EEeCCCC-CCCCHHHHHHHHHHHHh---CCcEEEEEcCCCcccc
Confidence 5677788 78999999885444433 3579999999888764
No 93
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=94.80 E-value=0.019 Score=61.58 Aligned_cols=58 Identities=24% Similarity=0.156 Sum_probs=37.1
Q ss_pred cCcEEEecccchh-hHHHHHHhhhhc-CCCc-eeEEecccccCCCCCCccCCCCCCeeeccC
Q psy5948 190 KVDAQFGGVDQRK-IFTLAEKYLPQL-GYAK-RIHFMNPMVPGLAGGKMSSSEEDSKIDLLD 248 (549)
Q Consensus 190 ~~d~~~gG~DQ~~-~~~~~r~l~~~~-~~~~-~~~l~~plL~~l~G~KMSKS~~~s~I~L~D 248 (549)
-+|+.++|.||.. |+.........+ +..+ ...+.+.++.+.+|+|||||.|| .|++.|
T Consensus 296 p~d~~~~G~D~~~~h~~~~l~~~~~~~g~~p~~~v~~hg~v~~~~g~KMSKS~Gn-~v~~~d 356 (382)
T cd00817 296 PTSLLVTGHDIIFFWVARMIMRGLKLTGKLPFKEVYLHGLVRDEDGRKMSKSLGN-VIDPLD 356 (382)
T ss_pred CCCeeeeecCcCchHHHHHHHHHHHhhCCCchHHeEeeeeEECCCCCCccccCCC-CCCHHH
Confidence 4789999999954 433322122222 3323 23456778888999999999996 666543
No 94
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=94.72 E-value=0.021 Score=64.75 Aligned_cols=58 Identities=26% Similarity=0.123 Sum_probs=34.1
Q ss_pred ccCcEEEecccchhh-HHHHHHhhhhcCCCce--eEEecccccCCCCCCccCCCCCCeeecc
Q psy5948 189 LKVDAQFGGVDQRKI-FTLAEKYLPQLGYAKR--IHFMNPMVPGLAGGKMSSSEEDSKIDLL 247 (549)
Q Consensus 189 ~~~d~~~gG~DQ~~~-~~~~r~l~~~~~~~~~--~~l~~plL~~l~G~KMSKS~~~s~I~L~ 247 (549)
+-+|+.+.|.||..+ +....-+.-.+..+.| -.+.+.++.+.+|+|||||.|| .|.+.
T Consensus 513 ~P~D~~~~G~D~~~~W~~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GN-vi~p~ 573 (601)
T PF00133_consen 513 YPVDLYIEGKDQIRGWFQSSLFLSVALFGKEPFKKVITHGFVLDEDGRKMSKSKGN-VIDPE 573 (601)
T ss_dssp SSBSEEEEEGGGTTTHHHHHHHHHHHHSSSTSBSEEEEE--EEETTSSB-BTTTTB---BHH
T ss_pred CCcccccCCccchhhHHHHhHhhccccccCCchheeeecccccccceeecccCCCc-ccCHH
Confidence 468999999999553 3332222222222223 2557789999999999999996 66553
No 95
>PHA02142 putative RNA ligase
Probab=94.66 E-value=0.088 Score=55.60 Aligned_cols=67 Identities=27% Similarity=0.333 Sum_probs=49.7
Q ss_pred cccceeeeEEEEEecCCCCCceEEEEEEcCCCCCEEEEeCCccccccccCCCCEEEEE----------------------
Q psy5948 371 HRLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVL---------------------- 428 (549)
Q Consensus 371 ~~~~i~vG~I~~v~~hp~adkL~v~~vd~G~~~~~~Ivsg~~~~~~~~~l~g~~v~v~---------------------- 428 (549)
++-=+.|-+|..+++||+||.+=+++|| -.++|-.-..|. +|..||.+
T Consensus 6 ~RkLv~v~~i~~i~pi~~Ad~ie~a~V~-----gw~vVV~kg~f~-----~GD~~vY~eiDS~lP~~~~~~~~l~~~~~~ 75 (366)
T PHA02142 6 ERQLASMRKIADLQPIPGADAIEVATID-----GWEVVVKKGEFR-----VGDDCVYFEIDSLLPTDNPAFRFLETRARI 75 (366)
T ss_pred ceeEEEEEEEeeecccCCCCceeEEEEC-----CEEEEEeccccc-----cCCeEEEecccccccCCchhhhhhhccccc
Confidence 3445689999999999999999888886 255555544444 46655553
Q ss_pred ------Eeeccceecceecceeeec
Q psy5948 429 ------CNLKPAKMRGIESAGMVLC 447 (549)
Q Consensus 429 ------~nlk~~k~~G~~SeGMllc 447 (549)
.-|+..|+||..||||+|=
T Consensus 76 ~~g~~~~Ri~t~klRG~iSQGl~lp 100 (366)
T PHA02142 76 YDGKMRARIKTIKLRGQISQGIALP 100 (366)
T ss_pred cCCcccceEEEEEEeeEEeeeEEec
Confidence 1478889999999999853
No 96
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=93.75 E-value=0.057 Score=56.88 Aligned_cols=57 Identities=25% Similarity=0.187 Sum_probs=36.1
Q ss_pred cCcEEEecccchh---hHHHHHHhhhhcCCCce-eEEecccccCCCCCCccCCCCCCeeeccC
Q psy5948 190 KVDAQFGGVDQRK---IFTLAEKYLPQLGYAKR-IHFMNPMVPGLAGGKMSSSEEDSKIDLLD 248 (549)
Q Consensus 190 ~~d~~~gG~DQ~~---~~~~~r~l~~~~~~~~~-~~l~~plL~~l~G~KMSKS~~~s~I~L~D 248 (549)
.+++.+.|.|+.. |..+-.-++ ..+..++ -.+.+.++...+|+|||||.+| .|++.|
T Consensus 252 p~d~~~~GkDii~~wf~~~~~~~~~-~~~~~p~~~~~~hg~~~~~~g~KmSKS~gn-~i~~~~ 312 (338)
T cd00818 252 PADFILEGSDQTRGWFYSLLLLSTA-LFGKAPYKNVIVHGFVLDEDGRKMSKSLGN-YVDPQE 312 (338)
T ss_pred CCeEEeecchHHhHHHHHHHHHHHH-hcCCCccceEEEEeeEECCCCCCCCCCCCC-cCCHHH
Confidence 4678889999864 222212121 1233332 3446778888899999999996 777643
No 97
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=93.25 E-value=0.25 Score=53.17 Aligned_cols=78 Identities=23% Similarity=0.382 Sum_probs=40.4
Q ss_pred ecCCCccchhhhHHHH---HHHHHH-HcCCcEEEEEe-CceeeecCC---CChhHHHHHHHHHHHHHHHHHHHccCCCCC
Q psy5948 54 TATTGRPHIAYFVPMS---KIADFL-RAGCEVTILFA-DLHAYLDNM---KAPWELLALRTKYYEESIKAMLESIDVPIS 125 (549)
Q Consensus 54 i~PTG~lHIGn~~~~~---~l~~l~-~~G~~v~ilIa-D~~a~~~~~---~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~ 125 (549)
.-|.|.|||||+.+.+ .+.+++ ..|++++++.| |.|..-.-. .-..++.+....+. ..++.+|.++|++.+
T Consensus 8 pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~-~~~~~~~~~~~I~~D 86 (391)
T PF09334_consen 8 PYPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYS-AKFKELLEALNISYD 86 (391)
T ss_dssp EETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHH-HHHHHHHHHTT---S
T ss_pred CCCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCCCc
Confidence 4588999999988653 244555 56999866554 666642100 00012333333333 346678899999998
Q ss_pred eeEEEEccc
Q psy5948 126 KLKFVKGTD 134 (549)
Q Consensus 126 k~~i~~qS~ 134 (549)
.|++-++
T Consensus 87 --~F~rTt~ 93 (391)
T PF09334_consen 87 --RFIRTTD 93 (391)
T ss_dssp --EEEETTS
T ss_pred --ceeCCCC
Confidence 3444443
No 98
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=93.16 E-value=0.24 Score=57.07 Aligned_cols=78 Identities=17% Similarity=0.153 Sum_probs=46.4
Q ss_pred CceEEEee-cCCCccchhhhHHHH---HHHHHH-HcCCcEEEEEeCc-eeee--cCC-CChhHHHHHHHHHHHHHHHHHH
Q psy5948 47 DLKIYWGT-ATTGRPHIAYFVPMS---KIADFL-RAGCEVTILFADL-HAYL--DNM-KAPWELLALRTKYYEESIKAML 117 (549)
Q Consensus 47 ~~~v~~Gi-~PTG~lHIGn~~~~~---~l~~l~-~~G~~v~ilIaD~-~a~~--~~~-~~~~~~~~~~~~~~~~~i~~~l 117 (549)
++.|.+++ -|+|.+||||+.+.+ .+.+++ ..|++|+++.+.. |..- ... .-..+..+....+.+ .+...+
T Consensus 3 ~~~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~-~~~~~~ 81 (673)
T PRK00133 3 KILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHA-EHKRDF 81 (673)
T ss_pred CEEEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHH-HHHHHH
Confidence 45677888 799999999988643 255555 4699998777643 2210 000 000112233333333 356788
Q ss_pred HccCCCCC
Q psy5948 118 ESIDVPIS 125 (549)
Q Consensus 118 ~a~Gldp~ 125 (549)
.++|++++
T Consensus 82 ~~l~i~~d 89 (673)
T PRK00133 82 AGFGISFD 89 (673)
T ss_pred HHhCCCCC
Confidence 89999887
No 99
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=92.90 E-value=0.048 Score=56.81 Aligned_cols=57 Identities=26% Similarity=0.267 Sum_probs=34.4
Q ss_pred cCcEEEecccchhhHH----HHHHhhhhcCC---Cce-eEEecccccCCCCCCccCCCCCCeeeccC
Q psy5948 190 KVDAQFGGVDQRKIFT----LAEKYLPQLGY---AKR-IHFMNPMVPGLAGGKMSSSEEDSKIDLLD 248 (549)
Q Consensus 190 ~~d~~~gG~DQ~~~~~----~~r~l~~~~~~---~~~-~~l~~plL~~l~G~KMSKS~~~s~I~L~D 248 (549)
.+|+.++|.||..++. +-..++...+. .++ -.+.+-++. ++|+|||||.|+ .|++.|
T Consensus 224 p~di~v~G~D~i~~h~~~~~~~~~~l~~~g~~~~~~~~~~~~~g~v~-~~g~KmSkS~Gn-~v~~~d 288 (314)
T cd00812 224 PVDIYIGGKEHAPNHLLYSRFNHKALFDEGLVTDEPPKGLIVQGMVL-LEGEKMSKSKGN-VVTPDE 288 (314)
T ss_pred CCeeeecchhHHHHHHHHHHHHHHHHcCcccccccCcHHheecceEe-cCccccCCcCCC-CCCHHH
Confidence 4788999999965442 22223333332 222 122344554 689999999996 787754
No 100
>PLN02843 isoleucyl-tRNA synthetase
Probab=92.83 E-value=0.087 Score=63.03 Aligned_cols=58 Identities=26% Similarity=0.240 Sum_probs=37.3
Q ss_pred cccCcEEEecccchh-hH--HHHHHhhhhcCCCc-eeEEecccccCCCCCCccCCCCCCeeecc
Q psy5948 188 YLKVDAQFGGVDQRK-IF--TLAEKYLPQLGYAK-RIHFMNPMVPGLAGGKMSSSEEDSKIDLL 247 (549)
Q Consensus 188 ~~~~d~~~gG~DQ~~-~~--~~~r~l~~~~~~~~-~~~l~~plL~~l~G~KMSKS~~~s~I~L~ 247 (549)
.+-+|+.+.|.||.. ++ .+..-++ ..+..| .-.++|.++...+|+|||||.|| .|...
T Consensus 562 ~~PaDl~~eG~Di~rgWf~s~l~~~~~-~~g~~Pfk~v~~HG~vld~~G~KMSKSlGN-vI~p~ 623 (974)
T PLN02843 562 SYPADLYLEGSDQHRGWFQSSLLTSVA-TKGKAPYKSVLTHGFVLDEKGFKMSKSLGN-VVDPR 623 (974)
T ss_pred CCCceeeeeeccccchHHHHHHHHHHH-hcCCCccceEEEeccEECCCCCCcCCCCCC-cCCHH
Confidence 456889999999954 22 2221111 123322 23457889999999999999996 66543
No 101
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=92.52 E-value=0.086 Score=62.46 Aligned_cols=70 Identities=23% Similarity=0.251 Sum_probs=43.6
Q ss_pred ccCcEEEecccchh-hH--HHHHHhhhhcCCCce-eEEecccccCCCCCCccCCCCCCeeeccC-----CHHHHHHHHHh
Q psy5948 189 LKVDAQFGGVDQRK-IF--TLAEKYLPQLGYAKR-IHFMNPMVPGLAGGKMSSSEEDSKIDLLD-----APALVKKKLKK 259 (549)
Q Consensus 189 ~~~d~~~gG~DQ~~-~~--~~~r~l~~~~~~~~~-~~l~~plL~~l~G~KMSKS~~~s~I~L~D-----sp~~i~kKI~~ 259 (549)
+-+|+.+.|.||.. ++ .+-.-++ ..+..|+ -.+.+.++...+|+|||||.|| .|++.| .++.++=-+.+
T Consensus 563 ~P~d~~i~G~Di~r~Wf~~~~~~~~~-~~~~~P~k~v~~hG~vl~~~G~KMSKSkGN-vI~p~d~i~~yGaDalR~~ll~ 640 (861)
T TIGR00392 563 FPADFILEGSDQTRGWFYSSLAIGTA-LFGQAPYKNVITHGFTLDEKGRKMSKSLGN-VVDPLKVINKYGADILRLYVAS 640 (861)
T ss_pred CCceEEEEecchhccHHHHHHHHHHH-HcCCCChHhhEecceEECCCCCCcCCCCCC-CCCHHHHHHHcCHHHHHHHHHh
Confidence 45789999999954 22 2211111 1233332 2445778888899999999996 777765 45556555555
Q ss_pred c
Q psy5948 260 A 260 (549)
Q Consensus 260 A 260 (549)
+
T Consensus 641 ~ 641 (861)
T TIGR00392 641 S 641 (861)
T ss_pred C
Confidence 4
No 102
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=92.47 E-value=0.1 Score=62.15 Aligned_cols=69 Identities=22% Similarity=0.168 Sum_probs=42.9
Q ss_pred cccCcEEEecccchh-h--HHHHHHhhhhcCCCce-eEEecccccCCCCCCccCCCCCCeeeccC-----CHHHHHHHHH
Q psy5948 188 YLKVDAQFGGVDQRK-I--FTLAEKYLPQLGYAKR-IHFMNPMVPGLAGGKMSSSEEDSKIDLLD-----APALVKKKLK 258 (549)
Q Consensus 188 ~~~~d~~~gG~DQ~~-~--~~~~r~l~~~~~~~~~-~~l~~plL~~l~G~KMSKS~~~s~I~L~D-----sp~~i~kKI~ 258 (549)
.+-+|+.+.|.||.. + ..+-.-++- .+..|+ -.+++.++.+.+|+|||||.|| .|...+ .++.++=.+.
T Consensus 543 ~~P~Dl~~~G~Di~r~Wf~~~l~~~~~~-~g~~P~k~vl~HG~vld~~G~KMSKSlGN-vIdP~~ii~~yGaDalR~~ll 620 (912)
T PRK05743 543 GYPADLYLEGSDQHRGWFQSSLLTSVAT-RGKAPYKQVLTHGFTVDGKGRKMSKSLGN-VIDPQDVIKKYGADILRLWVA 620 (912)
T ss_pred CCCceEEEecccccchHHHHHHHHHHHh-cCCCccceeEEeeeEECCCCCCCCCCCCC-cCCHHHHHHhcChHHHHHHHH
Confidence 355889999999953 2 222222221 233332 3456789999999999999996 665543 3445555454
No 103
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=92.43 E-value=0.078 Score=58.86 Aligned_cols=57 Identities=26% Similarity=0.343 Sum_probs=36.9
Q ss_pred cCcEEEecccchhhHHHHH-HhhhhcCCC-ceeEEecccccCCCCCCccCCCCCCeeeccC
Q psy5948 190 KVDAQFGGVDQRKIFTLAE-KYLPQLGYA-KRIHFMNPMVPGLAGGKMSSSEEDSKIDLLD 248 (549)
Q Consensus 190 ~~d~~~gG~DQ~~~~~~~r-~l~~~~~~~-~~~~l~~plL~~l~G~KMSKS~~~s~I~L~D 248 (549)
..|+.++|.||...+...- -+....+.. |...+++-++. ++|+|||||.+| .|++.|
T Consensus 254 ~~D~~~~G~D~~~~h~~~~~a~~~a~~~~~p~~~~~~g~v~-~~G~KMSKS~GN-~i~~~d 312 (511)
T PRK11893 254 PADVHLIGKDILRFHAVYWPAFLMAAGLPLPKRVFAHGFLT-LDGEKMSKSLGN-VIDPFD 312 (511)
T ss_pred CCcceEecccccccchhHHHHHHHhCCCCCCCEEEeeccEE-ECCeeecccCCc-EEcHHH
Confidence 4688999999976432211 111222333 34555667776 589999999996 888865
No 104
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=91.66 E-value=0.14 Score=60.11 Aligned_cols=68 Identities=18% Similarity=0.136 Sum_probs=40.4
Q ss_pred cCcEEEecccchhhHHHHHHhhh-h-cCCCc-eeEEecccccCCCCCCccCCCCCCeeeccC-----CHHHHHHHHH
Q psy5948 190 KVDAQFGGVDQRKIFTLAEKYLP-Q-LGYAK-RIHFMNPMVPGLAGGKMSSSEEDSKIDLLD-----APALVKKKLK 258 (549)
Q Consensus 190 ~~d~~~gG~DQ~~~~~~~r~l~~-~-~~~~~-~~~l~~plL~~l~G~KMSKS~~~s~I~L~D-----sp~~i~kKI~ 258 (549)
-+|+.+.|.||....-...-+.. . .+..| .-.+.+.++.+.+|+|||||.|| .|++.| .++.++=-+.
T Consensus 486 P~d~~~~G~Di~~~w~~~~l~~~~~~~~~~Pf~~v~~hg~v~~~~G~KMSKS~GN-~i~p~~~i~~yg~D~lR~~l~ 561 (800)
T PRK13208 486 PMDLRPQGHDIIRTWLFYTILRAYLLTGKLPWKNIMISGMVLDPDGKKMSKSKGN-VVTPEELLEKYGADAVRYWAA 561 (800)
T ss_pred CceEEEeecchhhhHHHHHHHHHHHhcCCCCcceEEEeeEEECCCCCCCCCCCCC-CCCHHHHHHHcCccHHHHHHh
Confidence 36888899999653211111111 1 12223 22356788889999999999996 677654 3444444444
No 105
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=91.44 E-value=0.57 Score=52.51 Aligned_cols=83 Identities=24% Similarity=0.281 Sum_probs=47.0
Q ss_pred cCCCccchhhhHHHH---HHHHHHH-cCCcEEEEEe-CceeeecCC---CChhHHHHHHHHHHHHHHHHHHHccCCCCCe
Q psy5948 55 ATTGRPHIAYFVPMS---KIADFLR-AGCEVTILFA-DLHAYLDNM---KAPWELLALRTKYYEESIKAMLESIDVPISK 126 (549)
Q Consensus 55 ~PTG~lHIGn~~~~~---~l~~l~~-~G~~v~ilIa-D~~a~~~~~---~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~k 126 (549)
-|.|.+||||+.+.+ .+.++++ .|++++++-| |-|..-.-. .-..++.+...++.+ .++.+|.+++++-+
T Consensus 15 Y~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~-~~~~~~~~l~IsfD- 92 (558)
T COG0143 15 YPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHE-EFKELFKALNISFD- 92 (558)
T ss_pred CCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHH-HHHHHHHHhCCccc-
Confidence 578999999988544 3566664 5999977666 555431100 000122334444333 24567888899877
Q ss_pred eEEEEcccccccccc
Q psy5948 127 LKFVKGTDYQLSKEY 141 (549)
Q Consensus 127 ~~i~~qS~~~~~~~~ 141 (549)
.|....-+.|.++
T Consensus 93 --~F~rTt~~~h~~~ 105 (558)
T COG0143 93 --NFIRTTSPEHKEL 105 (558)
T ss_pred --ccccCCCHHHHHH
Confidence 4444433344443
No 106
>PLN02959 aminoacyl-tRNA ligase
Probab=91.02 E-value=0.16 Score=61.47 Aligned_cols=58 Identities=21% Similarity=0.129 Sum_probs=35.8
Q ss_pred ccCcEEEecccchh-hHHHHHHhhhhcCCCcee---EEecccccCCCCCCccCCCCCCeeeccC
Q psy5948 189 LKVDAQFGGVDQRK-IFTLAEKYLPQLGYAKRI---HFMNPMVPGLAGGKMSSSEEDSKIDLLD 248 (549)
Q Consensus 189 ~~~d~~~gG~DQ~~-~~~~~r~l~~~~~~~~~~---~l~~plL~~l~G~KMSKS~~~s~I~L~D 248 (549)
|=+|+-+.|.||.. |+.+.......+..+.|+ .+.+.++. .+|+|||||.|| .|.+.|
T Consensus 670 yP~Dl~~sG~Dii~~wl~~~l~~~~al~~~~P~p~~v~v~G~V~-~~G~KMSKSkGN-vI~p~d 731 (1084)
T PLN02959 670 YPFDLRVSGKDLIQNHLTFAIYNHTAIWAEEHWPRGFRCNGHLM-LNSEKMSKSTGN-FLTLRQ 731 (1084)
T ss_pred CCCeEEEecccHHHHHHHHHHHHHHHhcCCCCCCceEEEccEEe-cCCcCccccCCC-cCCHHH
Confidence 45788999999955 444333222222112232 33455565 899999999996 677765
No 107
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=90.92 E-value=0.25 Score=58.14 Aligned_cols=59 Identities=25% Similarity=0.160 Sum_probs=37.0
Q ss_pred CcEEEecccch-h--hHHHHHHhhhhcCCCcee--EEecccccCCCCCCccCCCCCCeeeccCCHHHHHHH
Q psy5948 191 VDAQFGGVDQR-K--IFTLAEKYLPQLGYAKRI--HFMNPMVPGLAGGKMSSSEEDSKIDLLDAPALVKKK 256 (549)
Q Consensus 191 ~d~~~gG~DQ~-~--~~~~~r~l~~~~~~~~~~--~l~~plL~~l~G~KMSKS~~~s~I~L~Dsp~~i~kK 256 (549)
+|+..=|+||. + +-.+..-.+ +...+|| .|++-++.+-+|.|||||.|| +| +|.+|-++
T Consensus 556 aD~~lEGsDQ~RGWF~Ssl~~s~a--~~~~aPYk~vltHGfvlDe~GrKMSKSlGN-~v----~P~~V~~~ 619 (933)
T COG0060 556 ADFYLEGSDQTRGWFYSSLLTSTA--LFGRAPYKNVLTHGFVLDEKGRKMSKSLGN-VV----DPQDVIDK 619 (933)
T ss_pred CcEEEEeccccchhHHHHHHHHHH--HcCCchHHHHhhcccEECCCCCCccccCCC-cC----CHHHHHHh
Confidence 58889999992 3 332222111 1123444 567889999999999999996 43 34444443
No 108
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=90.86 E-value=0.18 Score=60.41 Aligned_cols=70 Identities=20% Similarity=0.169 Sum_probs=44.0
Q ss_pred cccCcEEEecccchh---hHHHHHHhhhhcCCCce-eEEecccccCCCCCCccCCCCCCeeeccC-----CHHHHHHHHH
Q psy5948 188 YLKVDAQFGGVDQRK---IFTLAEKYLPQLGYAKR-IHFMNPMVPGLAGGKMSSSEEDSKIDLLD-----APALVKKKLK 258 (549)
Q Consensus 188 ~~~~d~~~gG~DQ~~---~~~~~r~l~~~~~~~~~-~~l~~plL~~l~G~KMSKS~~~s~I~L~D-----sp~~i~kKI~ 258 (549)
.+-+|+.+.|.||.. |..+..-+. -.+..|+ -.+.|.++.+.+|+|||||.|| .|...+ .++.++=.+.
T Consensus 581 ~~PaD~~~eG~Di~rgWF~s~ll~s~~-~~~~~P~k~V~~HG~vld~~G~KMSKSlGN-vIdP~~ii~~yGaD~lRl~ll 658 (961)
T PRK13804 581 KWPADLYLEGSDQHRGWFNSSLLESCG-TRGRAPYKAVLTHGFTLDEKGEKMSKSLGN-TVSPQDVIKQSGADILRLWVA 658 (961)
T ss_pred CCCceEEEEEcccccHHHHHHHHHHHH-hcCCCChhhEEEeccEECCCCCCccCCCCC-cCCHHHHHHhcCHHHHHHHHH
Confidence 345889999999953 222211111 0122222 3557889999999999999996 676654 5566666665
Q ss_pred h
Q psy5948 259 K 259 (549)
Q Consensus 259 ~ 259 (549)
.
T Consensus 659 s 659 (961)
T PRK13804 659 S 659 (961)
T ss_pred h
Confidence 4
No 109
>PLN02224 methionine-tRNA ligase
Probab=90.81 E-value=0.33 Score=55.26 Aligned_cols=78 Identities=15% Similarity=0.170 Sum_probs=47.0
Q ss_pred CCceEEEee-cCCCccchhhhHHHH---HHHHHHH-cCCcEEEEEe-Cceee--ecC--CCChhHHHHHHHHHHHHHHHH
Q psy5948 46 RDLKIYWGT-ATTGRPHIAYFVPMS---KIADFLR-AGCEVTILFA-DLHAY--LDN--MKAPWELLALRTKYYEESIKA 115 (549)
Q Consensus 46 ~~~~v~~Gi-~PTG~lHIGn~~~~~---~l~~l~~-~G~~v~ilIa-D~~a~--~~~--~~~~~~~~~~~~~~~~~~i~~ 115 (549)
+++.|-+++ -|+|.+||||+.+.. .+.++++ .|++|+++.| |-|.. ... ..+ .+..+....+.. .+..
T Consensus 69 ~~~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~g-~~p~e~~~~~~~-~~~~ 146 (616)
T PLN02224 69 DTFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANG-RNPPEHCDIISQ-SYRT 146 (616)
T ss_pred CeEEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHcC-CChHHHHHHHHH-HHHH
Confidence 566778888 889999999988643 2455554 5999876665 55542 000 000 112223333322 3456
Q ss_pred HHHccCCCCC
Q psy5948 116 MLESIDVPIS 125 (549)
Q Consensus 116 ~l~a~Gldp~ 125 (549)
.+.++|++++
T Consensus 147 ~~~~l~I~~D 156 (616)
T PLN02224 147 LWKDLDIAYD 156 (616)
T ss_pred HHHHcCCCCC
Confidence 7889999987
No 110
>KOG0432|consensus
Probab=90.53 E-value=0.48 Score=54.63 Aligned_cols=27 Identities=37% Similarity=0.438 Sum_probs=21.7
Q ss_pred EEecccccCCCCCCccCCCCCCeeeccC
Q psy5948 221 HFMNPMVPGLAGGKMSSSEEDSKIDLLD 248 (549)
Q Consensus 221 ~l~~plL~~l~G~KMSKS~~~s~I~L~D 248 (549)
.+.||++.+..|.|||||-|| .|...|
T Consensus 580 V~LH~mVRDa~GRKMSKSLGN-VIDPlD 606 (995)
T KOG0432|consen 580 VLLHGLVRDAHGRKMSKSLGN-VIDPLD 606 (995)
T ss_pred eeechhhccccccccchhhcc-ccCHHH
Confidence 457899999999999999996 554433
No 111
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=90.30 E-value=0.23 Score=59.59 Aligned_cols=58 Identities=22% Similarity=0.198 Sum_probs=36.3
Q ss_pred ccCcEEEecccchhh---HHHHHHhhhhcCCCc-eeEEecccccCCCCCCccCCCCCCeeeccC
Q psy5948 189 LKVDAQFGGVDQRKI---FTLAEKYLPQLGYAK-RIHFMNPMVPGLAGGKMSSSEEDSKIDLLD 248 (549)
Q Consensus 189 ~~~d~~~gG~DQ~~~---~~~~r~l~~~~~~~~-~~~l~~plL~~l~G~KMSKS~~~s~I~L~D 248 (549)
+-+|+.+.|.||... ..+..-++ -++..| .-.+.+.++...+|+|||||.|| .|++.|
T Consensus 544 ~Pad~~~~G~Di~r~Wf~~l~~~~~~-~~~~~pfk~v~~hG~Vld~~G~KMSKSlGN-vIdP~d 605 (975)
T PRK06039 544 FPADFIVEGIDQTRGWFYTLLALSTA-LFDRPPYKNVLVHGHVLDEDGQKMSKSLGN-YVDPFE 605 (975)
T ss_pred CCceEEEechhhHhhHHHHHHHHHHH-hcCCCcccEEEEeeeEECCCCCCcCCCCCC-cCCHHH
Confidence 457889999999542 22211111 112222 23456778888899999999996 676654
No 112
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=90.10 E-value=0.21 Score=59.67 Aligned_cols=70 Identities=20% Similarity=0.108 Sum_probs=42.7
Q ss_pred ccCcEEEecccchh-hHHHHHHhhhhc-CC--CceeEEecccccCCCCCCccCCCCCCeeeccC-----CHHHHHHHHHh
Q psy5948 189 LKVDAQFGGVDQRK-IFTLAEKYLPQL-GY--AKRIHFMNPMVPGLAGGKMSSSEEDSKIDLLD-----APALVKKKLKK 259 (549)
Q Consensus 189 ~~~d~~~gG~DQ~~-~~~~~r~l~~~~-~~--~~~~~l~~plL~~l~G~KMSKS~~~s~I~L~D-----sp~~i~kKI~~ 259 (549)
+-+|+.+.|.||.. |+.+-.-....+ +. -|...+++.++.. +|+|||||.|| .|++.| .++.++=-+..
T Consensus 572 yP~D~~~~GkDii~~H~~~~i~~~~a~~~~~~~Pk~i~~~G~vl~-~G~KMSKSlGN-vI~p~d~i~~yGaDalRl~Ll~ 649 (938)
T TIGR00395 572 YPLDWRISGKDLIPNHLTFYIFHHVAIFPEKFWPRGIVVNGYVML-EGKKMSKSKGN-VLTLEQAVEKFGADVARLYIAD 649 (938)
T ss_pred CCceEEEEeeccccchHHHHHHHHHHcCCccccCcEEEEeceEEe-CCccccCcCCC-CCCHHHHHHHcChHHHHHHHHh
Confidence 45789999999965 443322111111 11 1234456666665 89999999996 777765 45666665655
Q ss_pred c
Q psy5948 260 A 260 (549)
Q Consensus 260 A 260 (549)
+
T Consensus 650 ~ 650 (938)
T TIGR00395 650 A 650 (938)
T ss_pred c
Confidence 4
No 113
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=89.95 E-value=0.24 Score=58.76 Aligned_cols=59 Identities=25% Similarity=0.271 Sum_probs=37.8
Q ss_pred ccCcEEEecccchhhHHHHHHh-hhhc-CCCc-eeEEecccccCCCCCCccCCCCCCeeeccC
Q psy5948 189 LKVDAQFGGVDQRKIFTLAEKY-LPQL-GYAK-RIHFMNPMVPGLAGGKMSSSEEDSKIDLLD 248 (549)
Q Consensus 189 ~~~d~~~gG~DQ~~~~~~~r~l-~~~~-~~~~-~~~l~~plL~~l~G~KMSKS~~~s~I~L~D 248 (549)
+-+|+.+.|.||......-.-+ .-.+ +..| .-.+.+.++.+.+|+|||||.|| .|++.|
T Consensus 477 ~P~d~~~~G~Dii~fw~~~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G~KMSKS~GN-~i~p~~ 538 (861)
T TIGR00422 477 YPTDLLVTGYDIIFFWVARMIFRSLALTGQVPFKEVYIHGLVRDEQGRKMSKSLGN-VIDPLD 538 (861)
T ss_pred CCcceeecchhhhhHHHHHHHHHHHHhcCCCchheEEEeeEEECCCCCCCCcCCCC-CCCHHH
Confidence 4578899999995543221111 1112 2223 23557789999999999999996 677655
No 114
>KOG1147|consensus
Probab=89.47 E-value=0.94 Score=49.68 Aligned_cols=68 Identities=19% Similarity=0.258 Sum_probs=42.3
Q ss_pred ecCCCccchhhhHHHHHHHHHHHc-CCcEEEEEeCceeeecCCCChhHHHHHHHHHHHHHHHHHHHccCCCCCeeEEEEc
Q psy5948 54 TATTGRPHIAYFVPMSKIADFLRA-GCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKG 132 (549)
Q Consensus 54 i~PTG~lHIGn~~~~~~l~~l~~~-G~~v~ilIaD~~a~~~~~~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~q 132 (549)
=+|||.+||||.-..+.-..++++ ..++++..-| +.| .+...+ ++..|...+.-+|+.|++ +-+-
T Consensus 207 PEpSGyLHIGHAKAALLNqYfa~~~~G~LIvRFDD--------TNP---aKE~~e-Fe~~IleDl~~LgIkpd~--~TyT 272 (712)
T KOG1147|consen 207 PEPSGYLHIGHAKAALLNQYFAQAYQGKLIVRFDD--------TNP---AKENEE-FEDVILEDLSLLGIKPDR--VTYT 272 (712)
T ss_pred CCCCceeehhhHHHHHHHHHHHHhcCceEEEEecC--------CCc---chhhHH-HHHHHHHHHHHhCcCcce--eeec
Confidence 378999999999876433344444 3577776666 223 122223 344455777789999994 4455
Q ss_pred ccc
Q psy5948 133 TDY 135 (549)
Q Consensus 133 S~~ 135 (549)
||+
T Consensus 273 SDy 275 (712)
T KOG1147|consen 273 SDY 275 (712)
T ss_pred hhh
Confidence 665
No 115
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=89.40 E-value=0.23 Score=51.84 Aligned_cols=71 Identities=20% Similarity=0.278 Sum_probs=39.1
Q ss_pred ecCCCccchhhhHHHH---HHHHHHH-cCCcEEEEEe-CceeeecCC---CChhHHHHHHHHHHHHHHHHHHHccCCCCC
Q psy5948 54 TATTGRPHIAYFVPMS---KIADFLR-AGCEVTILFA-DLHAYLDNM---KAPWELLALRTKYYEESIKAMLESIDVPIS 125 (549)
Q Consensus 54 i~PTG~lHIGn~~~~~---~l~~l~~-~G~~v~ilIa-D~~a~~~~~---~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~ 125 (549)
--|+|.+||||+.+.. .+.++++ .|++|.+..+ |.|..-.-. ....+..+....+.+ .+...+.++|++++
T Consensus 9 Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~-~~~~~l~~LgI~~D 87 (319)
T cd00814 9 PYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHE-IFKDLFKWLNISFD 87 (319)
T ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHH-HHHHHHHHcCCcCC
Confidence 3456999999998643 2445554 5888866554 444221000 000112233334433 35577889999877
No 116
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=89.37 E-value=0.23 Score=59.12 Aligned_cols=69 Identities=25% Similarity=0.135 Sum_probs=40.9
Q ss_pred ccCcEEEecccchh-hHHHHHHhhhh-cCC--CceeEEecccccCCCCCCccCCCCCCeeeccC-----CHHHHHHHHHh
Q psy5948 189 LKVDAQFGGVDQRK-IFTLAEKYLPQ-LGY--AKRIHFMNPMVPGLAGGKMSSSEEDSKIDLLD-----APALVKKKLKK 259 (549)
Q Consensus 189 ~~~d~~~gG~DQ~~-~~~~~r~l~~~-~~~--~~~~~l~~plL~~l~G~KMSKS~~~s~I~L~D-----sp~~i~kKI~~ 259 (549)
+-+|+.+.|.||.. |+.+..-.... ++. -|.-.+.+.++.. +|+|||||.|| .|++.| .++.++=.+..
T Consensus 529 ~P~D~~~~GkDii~~Hl~~~~~~~~a~~~~~~~Pk~v~~hG~vl~-~G~KMSKS~GN-vVdp~eii~~yGaDalRl~L~~ 606 (897)
T PRK12300 529 YPVDWRHSGKDLIPNHLTFFIFNHVAIFPEEKWPRGIVVNGFVLL-EGKKMSKSKGN-VIPLRKAIEEYGADVVRLYLTS 606 (897)
T ss_pred CCceEEEeeeccCccHHHHHHHHHHHhcCCCccCcEEEEcceEEE-CCccccCcCCC-CCCHHHHHHHcChHHHHHHHHh
Confidence 45688999999955 33332211111 111 1224456677776 89999999996 676654 44555544544
No 117
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=89.30 E-value=0.29 Score=59.71 Aligned_cols=53 Identities=25% Similarity=0.244 Sum_probs=35.4
Q ss_pred ccCcEEEecccchhh-H--HH--HHHhhhhcCCCcee--EEecccccCCCCCCccCCCCCCeeec
Q psy5948 189 LKVDAQFGGVDQRKI-F--TL--AEKYLPQLGYAKRI--HFMNPMVPGLAGGKMSSSEEDSKIDL 246 (549)
Q Consensus 189 ~~~d~~~gG~DQ~~~-~--~~--~r~l~~~~~~~~~~--~l~~plL~~l~G~KMSKS~~~s~I~L 246 (549)
+=+|+.+=|.||... + .+ +..+. + +.|| .+.+.++.+-+|+|||||.|| .|..
T Consensus 672 fPaD~i~eG~Dq~rgWf~s~l~~s~~l~---~-~~PfK~VlvHG~Vld~dG~KMSKSlGN-vIDP 731 (1205)
T PTZ00427 672 FPADFIAEGLDQTRGWFYTLLVISTLLF---D-KAPFKNLICNGLVLASDGKKMSKRLKN-YPDP 731 (1205)
T ss_pred CCceEEEEecchhccHHHHHHHHHHHhc---C-CCCcceeEEccEEEcCCCCCcccCCCC-CCCH
Confidence 458899999999442 2 22 22222 2 2343 457789999999999999996 5543
No 118
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=89.29 E-value=0.25 Score=59.69 Aligned_cols=69 Identities=25% Similarity=0.265 Sum_probs=43.9
Q ss_pred ccCcEEEecccchhhHHHHHHhhhhc---CCCc-eeEEecccccCCCCCCccCCCCCCeeeccC-----CHHHHHHHHHh
Q psy5948 189 LKVDAQFGGVDQRKIFTLAEKYLPQL---GYAK-RIHFMNPMVPGLAGGKMSSSEEDSKIDLLD-----APALVKKKLKK 259 (549)
Q Consensus 189 ~~~d~~~gG~DQ~~~~~~~r~l~~~~---~~~~-~~~l~~plL~~l~G~KMSKS~~~s~I~L~D-----sp~~i~kKI~~ 259 (549)
+-+|+.+.|.||... =+++-+...+ +..| .-.+.+.++.+.+|+|||||.|| .|+..| .++.++=.+..
T Consensus 490 ~P~d~~~~G~Dii~~-W~a~~l~~~~~~~~~~Pfk~V~~hG~v~d~~G~KMSKSkGN-vIdP~dvIe~yGaDalR~~L~~ 567 (1052)
T PRK14900 490 YPTSVMETGHDIIFF-WVARMMMMGLHFMGEVPFRTVYLHPMVRDEKGQKMSKTKGN-VIDPLVITEQYGADALRFTLAA 567 (1052)
T ss_pred CCchhhcccccHHhH-HHHHHHHHHHHhcCCCccceeEecccEECCCCCCccCCCCC-CCCHHHHHHHhCcHHHHHHHHh
Confidence 446788899998643 2233333222 2223 23557889999999999999996 777765 44555555544
No 119
>KOG1148|consensus
Probab=89.00 E-value=1.1 Score=49.66 Aligned_cols=88 Identities=22% Similarity=0.243 Sum_probs=56.6
Q ss_pred cCHHHHHHHHhcCCceEEEee--cCCCccchhhhHHHHHHHHHH-HcCCcEEEEEeCceeeecCCCChhHHHHHHHHHHH
Q psy5948 34 LGEDRLNVILKERDLKIYWGT--ATTGRPHIAYFVPMSKIADFL-RAGCEVTILFADLHAYLDNMKAPWELLALRTKYYE 110 (549)
Q Consensus 34 ~~~~~L~~~l~~~~~~v~~Gi--~PTG~lHIGn~~~~~~l~~l~-~~G~~v~ilIaD~~a~~~~~~~~~~~~~~~~~~~~ 110 (549)
-+++-+++.|+.-.=.|+|-| +|.|.+||||.-.+..-.-+. .+|.-|++..-| +.| ++..++|++
T Consensus 233 ~t~ellk~HL~~TGGkV~TRFPPEPNG~LHIGHaKAInvNFgyAk~~~G~cyLRfDD--------TNP---EkEee~yf~ 301 (764)
T KOG1148|consen 233 HTEELLKEHLERTGGKVVTRFPPEPNGILHIGHAKAINVNFGYAKAHGGVCYLRFDD--------TNP---EKEEEEYFE 301 (764)
T ss_pred chHHHHHHHHHhhCCeeEEeCCCCCCceeeecchhheeechhhhhhhCCeEEEecCC--------CCc---chhhHHHHH
Confidence 345667788875334577766 667899999987754323333 346677776655 333 334556766
Q ss_pred HHHHHHHHccCCCCCeeEEEEcccc
Q psy5948 111 ESIKAMLESIDVPISKLKFVKGTDY 135 (549)
Q Consensus 111 ~~i~~~l~a~Gldp~k~~i~~qS~~ 135 (549)
. |..+..++|+.|-| +-+.||+
T Consensus 302 s-I~e~V~WLG~~P~k--vTysSDy 323 (764)
T KOG1148|consen 302 S-IKEMVAWLGFEPYK--VTYSSDY 323 (764)
T ss_pred H-HHHHHHHhCCCcee--eecchhH
Confidence 4 45677789999974 4566776
No 120
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=88.80 E-value=0.65 Score=52.09 Aligned_cols=52 Identities=25% Similarity=0.364 Sum_probs=31.9
Q ss_pred EEEecccchhhHHHHHHhhhhc----CCCceeEEecccccCCCCCCccCCCCCCeeeccC
Q psy5948 193 AQFGGVDQRKIFTLAEKYLPQL----GYAKRIHFMNPMVPGLAGGKMSSSEEDSKIDLLD 248 (549)
Q Consensus 193 ~~~gG~DQ~~~~~~~r~l~~~~----~~~~~~~l~~plL~~l~G~KMSKS~~~s~I~L~D 248 (549)
+.+.|.|-..++.+ +.|.+ +...|-.+.+.=...++|+|||||.++ .||..+
T Consensus 291 vhfIGKDii~FHav---~wPamL~~~~~~lP~~i~ahg~l~~~G~KmSKSrG~-~V~~~~ 346 (558)
T COG0143 291 VHFIGKDIIRFHAV---YWPAMLMAAGLPLPTRIFAHGFLTLEGQKMSKSRGN-VVDPDE 346 (558)
T ss_pred EEEeccccCcchhh---HHHHHHHhCCCCCCCEEEeeeeEEECCccccccCCc-EEeHHH
Confidence 56789995444433 44432 333444444444556789999999996 888654
No 121
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=88.61 E-value=0.28 Score=58.24 Aligned_cols=69 Identities=22% Similarity=0.219 Sum_probs=42.4
Q ss_pred ccCcEEEecccchhhHHHHHHhhhhc--CCCce--eEEecccccCCCCCCccCCCCCCeeeccC-----CHHHHHHHHHh
Q psy5948 189 LKVDAQFGGVDQRKIFTLAEKYLPQL--GYAKR--IHFMNPMVPGLAGGKMSSSEEDSKIDLLD-----APALVKKKLKK 259 (549)
Q Consensus 189 ~~~d~~~gG~DQ~~~~~~~r~l~~~~--~~~~~--~~l~~plL~~l~G~KMSKS~~~s~I~L~D-----sp~~i~kKI~~ 259 (549)
+-+|+.+.|.||.... .++-++... ..+.| -.+.+.++.+.+|+|||||.|| .|++.| .++.++=-+..
T Consensus 472 ~P~d~~~~G~Dii~~W-~a~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G~KMSKSlGN-vIdP~dvi~~yGaDalR~~ll~ 549 (874)
T PRK05729 472 YPTSVLVTGFDIIFFW-VARMIMMGLHFTGQVPFKDVYIHGLVRDEQGRKMSKSKGN-VIDPLDLIDKYGADALRFTLAA 549 (874)
T ss_pred CCcccccccccccchH-HHHHHHHHHHhcCCCchhheEEeeeEECCCCCCcccCCCC-CCCHHHHHHHhChHHHHHHHHh
Confidence 4568888999986532 222222211 11223 3557789999999999999996 677655 34444444443
No 122
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=87.70 E-value=0.34 Score=58.33 Aligned_cols=57 Identities=26% Similarity=0.223 Sum_probs=37.1
Q ss_pred ccCcEEEecccchhhHHHHHHhhhhc--CCCcee--EEecccccCCCCCCccCCCCCCeeecc
Q psy5948 189 LKVDAQFGGVDQRKIFTLAEKYLPQL--GYAKRI--HFMNPMVPGLAGGKMSSSEEDSKIDLL 247 (549)
Q Consensus 189 ~~~d~~~gG~DQ~~~~~~~r~l~~~~--~~~~~~--~l~~plL~~l~G~KMSKS~~~s~I~L~ 247 (549)
+-+|+.+.|.||... =++|-++..+ ..+.|| .+.|.++.+.+|+|||||.|| .|...
T Consensus 537 ~P~d~~~~G~Dii~~-W~arm~~~~~~~~~~~Pfk~v~~HG~v~d~~G~KMSKSlGN-vIdP~ 597 (995)
T PTZ00419 537 FPTSLLETGSDILFF-WVARMVMMSLHLTDKLPFKTVFLHAMVRDSQGEKMSKSKGN-VIDPL 597 (995)
T ss_pred CCCcEEEechhHHhH-HHHHHHHHHHHhcCCCChHHHhccceEECCCCCCcccCCCC-cCChH
Confidence 457899999998541 1222222221 223454 557889999999999999996 66443
No 123
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=87.53 E-value=0.31 Score=55.86 Aligned_cols=76 Identities=17% Similarity=0.095 Sum_probs=48.1
Q ss_pred HHhhcccccccCcEEEecccch-hhH--HHHHHhhhhcCC--CceeEEecccccCCCCCCccCCCCCCeeeccC-----C
Q psy5948 180 GLQALDEEYLKVDAQFGGVDQR-KIF--TLAEKYLPQLGY--AKRIHFMNPMVPGLAGGKMSSSEEDSKIDLLD-----A 249 (549)
Q Consensus 180 ~LqAaDil~~~~d~~~gG~DQ~-~~~--~~~r~l~~~~~~--~~~~~l~~plL~~l~G~KMSKS~~~s~I~L~D-----s 249 (549)
-.|+.|+|-..+|+--||.|.. +|+ ++|.--+- ++. -..+.+|+.+ ..++|+|||||.|| .|.+.| +
T Consensus 258 sam~~~~lg~~~DIh~gG~DL~FPHHeNEiAQseA~-~~~~~~v~y~~H~G~-L~i~G~KMSKSLGN-fItp~dlLekyg 334 (651)
T PTZ00399 258 SAMASNILGDPIDIHSGGIDLKFPHHDNELAQSEAY-FDKHQWVNYFLHSGH-LHIKGLKMSKSLKN-FITIRQALSKYT 334 (651)
T ss_pred HHHHHHHcCCcceeeccCCCCCCCcchhHHHHHHHh-hCCCCCCcEEEEEEE-EEeccchhhhcCCC-cccHHHHHHHcC
Confidence 6788999888899999999973 454 33222111 122 1234555555 45799999999996 777765 4
Q ss_pred HHHHHHHHH
Q psy5948 250 PALVKKKLK 258 (549)
Q Consensus 250 p~~i~kKI~ 258 (549)
++.++=-+.
T Consensus 335 aDaLR~~lL 343 (651)
T PTZ00399 335 ARQIRLLFL 343 (651)
T ss_pred hHHHHHHHH
Confidence 445444333
No 124
>PLN02381 valyl-tRNA synthetase
Probab=87.35 E-value=0.41 Score=57.90 Aligned_cols=58 Identities=26% Similarity=0.306 Sum_probs=37.4
Q ss_pred ccCcEEEecccchhhHHHHHHhhhh--cCCCcee--EEecccccCCCCCCccCCCCCCeeeccC
Q psy5948 189 LKVDAQFGGVDQRKIFTLAEKYLPQ--LGYAKRI--HFMNPMVPGLAGGKMSSSEEDSKIDLLD 248 (549)
Q Consensus 189 ~~~d~~~gG~DQ~~~~~~~r~l~~~--~~~~~~~--~l~~plL~~l~G~KMSKS~~~s~I~L~D 248 (549)
+-+|+.+-|.||...- ++|-+.-. +....|| .+.+.++.+.+|+|||||.|| .|...|
T Consensus 607 ~P~d~~~~G~Dii~~W-~~rmi~~~~~~~~~~PFk~v~~hG~V~D~~G~KMSKS~GN-vIdP~~ 668 (1066)
T PLN02381 607 YPTSVLETGHDILFFW-VARMVMMGMQLGGDVPFRKVYLHPMIRDAHGRKMSKSLGN-VIDPLE 668 (1066)
T ss_pred CCCeeeeecchhhhhH-HHHHHHHHHHhCCCCchHHheecceEECCCCCCCCCCCCC-CCCHHH
Confidence 4578888999985322 22222221 2223444 457889999999999999996 665443
No 125
>PLN02882 aminoacyl-tRNA ligase
Probab=87.16 E-value=0.53 Score=57.39 Aligned_cols=57 Identities=21% Similarity=0.115 Sum_probs=35.7
Q ss_pred ccCcEEEecccchhhH---HHHHHhhhhcCCCce-eEEecccccCCCCCCccCCCCCCeeecc
Q psy5948 189 LKVDAQFGGVDQRKIF---TLAEKYLPQLGYAKR-IHFMNPMVPGLAGGKMSSSEEDSKIDLL 247 (549)
Q Consensus 189 ~~~d~~~gG~DQ~~~~---~~~r~l~~~~~~~~~-~~l~~plL~~l~G~KMSKS~~~s~I~L~ 247 (549)
+-+|+.+-|.||...- .+..-.+ -++..|+ -.+.+.++..-+|+|||||.|| .|...
T Consensus 566 ~PaD~i~eG~Dq~RgWf~~ll~~s~~-l~~~~pfk~VivhG~vlde~G~KMSKSlGN-vIdP~ 626 (1159)
T PLN02882 566 FPADFVAEGLDQTRGWFYTLMVLSTA-LFDKPAFKNLICNGLVLAEDGKKMSKSLKN-YPDPN 626 (1159)
T ss_pred CCceEEEEecchhhhHHHHHHHHHHH-hcCCCCcceeEEccEEECCCCCCcccCCCC-CCCHH
Confidence 3488899999994422 1211111 1233222 3457788999999999999996 66543
No 126
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=87.06 E-value=1.1 Score=51.62 Aligned_cols=68 Identities=19% Similarity=0.206 Sum_probs=40.1
Q ss_pred cCcEEEecccchhhHHHH-HHhhhhcCCCceeEE-ecccccCCCCCCccCCCCCCeeeccC-----CHHHHHHHHHh
Q psy5948 190 KVDAQFGGVDQRKIFTLA-EKYLPQLGYAKRIHF-MNPMVPGLAGGKMSSSEEDSKIDLLD-----APALVKKKLKK 259 (549)
Q Consensus 190 ~~d~~~gG~DQ~~~~~~~-r~l~~~~~~~~~~~l-~~plL~~l~G~KMSKS~~~s~I~L~D-----sp~~i~kKI~~ 259 (549)
.+++.+.|.||..++.+- --+.-..+..+|-.+ .+.++. .+|+|||||.+| .|+..| +++.++=.+.+
T Consensus 254 p~~~~~~GkDii~fH~i~wpa~l~~~~~~~p~~v~~hg~l~-~eg~KMSKS~GN-~i~p~d~l~~ygaD~lR~~L~~ 328 (648)
T PRK12267 254 PADVHLVGKDILRFHAIYWPIMLMALGLPLPKKVFAHGWWL-MKDGKMSKSKGN-VVDPEELVDRYGLDALRYYLLR 328 (648)
T ss_pred ccceEEEeeeecchhHHHHHHHHHhCCCCCCcEEEecceEE-ECCceecccCCc-ccCHHHHHHHcCCcHHHHHHHh
Confidence 357888999997644321 011112344444333 445554 478999999996 788765 45555555544
No 127
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=86.94 E-value=1.3 Score=49.41 Aligned_cols=71 Identities=21% Similarity=0.261 Sum_probs=39.3
Q ss_pred ecCCCccchhhhHHHH---HHHHHHH-cCCcEEEEEe-CceeeecC---CCChhHHHHHHHHHHHHHHHHHHHccCCCCC
Q psy5948 54 TATTGRPHIAYFVPMS---KIADFLR-AGCEVTILFA-DLHAYLDN---MKAPWELLALRTKYYEESIKAMLESIDVPIS 125 (549)
Q Consensus 54 i~PTG~lHIGn~~~~~---~l~~l~~-~G~~v~ilIa-D~~a~~~~---~~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~ 125 (549)
--|+|.+||||++++. .+.++++ .|++|.+..+ |.|..-.- .....+..+....+.+ .+...+.++|++++
T Consensus 8 P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~-~~~~~l~~LgI~~D 86 (530)
T TIGR00398 8 PYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHE-EFKDDWKWLNISFD 86 (530)
T ss_pred CCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHH-HHHHHHHHhCCCCC
Confidence 3588999999988653 2455554 5888876665 32221000 0000112333333333 35567888898766
No 128
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=86.74 E-value=0.52 Score=53.24 Aligned_cols=65 Identities=17% Similarity=0.127 Sum_probs=43.4
Q ss_pred EEEecccchhhHHHHHHhhhhcCCCceeEE-ecccccCCCCCCccCCCCCCeeeccCCHHHHHHHHHh
Q psy5948 193 AQFGGVDQRKIFTLAEKYLPQLGYAKRIHF-MNPMVPGLAGGKMSSSEEDSKIDLLDAPALVKKKLKK 259 (549)
Q Consensus 193 ~~~gG~DQ~~~~~~~r~l~~~~~~~~~~~l-~~plL~~l~G~KMSKS~~~s~I~L~Dsp~~i~kKI~~ 259 (549)
+-+.|.||.+|+..-...+..+|...+-.+ ++.+.+ ..|.|||||.|+ .|.+.|=.++..++...
T Consensus 331 I~V~g~~q~~h~~~v~~~l~~lG~~~~~~l~h~~~~~-V~~~kmSkr~Gn-~V~~~dll~~~~~ra~~ 396 (566)
T TIGR00456 331 IYVWGSDHHLHIAQFFAILEKLGFYKKKELIHLNFGM-VPLGSMKTRRGN-VISLDNLLDEASKRAGN 396 (566)
T ss_pred EEEecCcHHHHHHHHHHHHHHcCCCCCCceEEEEEEE-EECCCCCccCCc-eeeHHHHHHHHHHHHHH
Confidence 345899999999888888888886433222 322211 134799999985 89998755555544443
No 129
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=86.58 E-value=1.1 Score=46.62 Aligned_cols=56 Identities=20% Similarity=0.131 Sum_probs=32.9
Q ss_pred cCcEEEecccchhhHHHHH-HhhhhcCCCce-eEEecccccCCCCCCccCCCCCCeeecc
Q psy5948 190 KVDAQFGGVDQRKIFTLAE-KYLPQLGYAKR-IHFMNPMVPGLAGGKMSSSEEDSKIDLL 247 (549)
Q Consensus 190 ~~d~~~gG~DQ~~~~~~~r-~l~~~~~~~~~-~~l~~plL~~l~G~KMSKS~~~s~I~L~ 247 (549)
..++.+.|.|+..++...- -+....+..+| ..+.+.++ .++|+|||||.++ .|++.
T Consensus 235 ~~~v~~~G~D~~~fh~~~~pa~l~~~~~~~~~~~~~~~~~-~~~g~kmSkS~gn-~i~~~ 292 (319)
T cd00814 235 PELVHFIGKDIIRFHAIYWPAMLLGAGLPLPTRIVAHGYL-TVEGKKMSKSRGN-VVDPD 292 (319)
T ss_pred CceEEEEeechhhhhHHHHHHHHHhCCCCCCcEeeeeeeE-EECCeeecccCCc-ccCHH
Confidence 3478899999866442211 12222343333 33344444 4569999999996 77774
No 130
>PLN02286 arginine-tRNA ligase
Probab=86.35 E-value=1.1 Score=50.63 Aligned_cols=59 Identities=19% Similarity=0.218 Sum_probs=45.3
Q ss_pred EEEecccchhhHHHHHHhhhhcCCC-c-----eeEEecccccCCCCCCccCCCCCCeeeccCCHHH
Q psy5948 193 AQFGGVDQRKIFTLAEKYLPQLGYA-K-----RIHFMNPMVPGLAGGKMSSSEEDSKIDLLDAPAL 252 (549)
Q Consensus 193 ~~~gG~DQ~~~~~~~r~l~~~~~~~-~-----~~~l~~plL~~l~G~KMSKS~~~s~I~L~Dsp~~ 252 (549)
+-++|.||.+|+..-..+++.+|+. + ..++..-++.+++|+||||..|+ .|.|.|=-++
T Consensus 331 IyVvg~~q~~hf~~v~~~l~~lG~~~~~~~~~l~h~~~g~V~~~~g~kmStR~G~-~v~L~dllde 395 (576)
T PLN02286 331 IYVTDVGQQQHFDMVFKAAKRAGWLPEDTYPRLEHVGFGLVLGEDGKRFRTRSGE-VVRLVDLLDE 395 (576)
T ss_pred EEEEeCcHHHHHHHHHHHHHHcCCCccccCCceEEEeeccEECCCCCcccCCCCC-eeEHHHHHHH
Confidence 3458999999998888888888863 2 33555667877899999999885 8999874333
No 131
>PLN02660 pantoate--beta-alanine ligase
Probab=85.54 E-value=7.5 Score=40.00 Aligned_cols=66 Identities=15% Similarity=0.187 Sum_probs=49.1
Q ss_pred ccCcEEEecccchhhHHHHHHhhhhcCCCceeEEecccccCCCCCCccCCCCCCeeeccCCHHHHHHHHHh
Q psy5948 189 LKVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGGKMSSSEEDSKIDLLDAPALVKKKLKK 259 (549)
Q Consensus 189 ~~~d~~~gG~DQ~~~~~~~r~l~~~~~~~~~~~l~~plL~~l~G~KMSKS~~~s~I~L~Dsp~~i~kKI~~ 259 (549)
.+.|..+.|.--+|-+.+-|++.+.++.. .-.+.+|.+...+|=-||+.+ .+|++...+....|-+
T Consensus 145 v~P~~a~FGeKD~QQl~vIrrmV~dL~~~-v~I~~~ptvRe~dGLA~SSRN----~yLs~~eR~~A~~l~~ 210 (284)
T PLN02660 145 VEPDVAVFGKKDYQQWRVIRRMVRDLDFD-IEVVGSPIVREADGLAMSSRN----VRLSAEEREKALSISR 210 (284)
T ss_pred cCCCEeeecchHHHHHHHHHHHHHHcCCC-ceEEeeCceECCCCCeecccc----ccCCHHHHHHHHHHHH
Confidence 36778888888899999999999888763 334567899999999999883 5677665555554443
No 132
>PLN02943 aminoacyl-tRNA ligase
Probab=85.40 E-value=0.67 Score=55.59 Aligned_cols=69 Identities=19% Similarity=0.170 Sum_probs=43.3
Q ss_pred ccCcEEEecccchhhHHHHHHhhhh--cCCCcee--EEecccccCCCCCCccCCCCCCeeeccC-----CHHHHHHHHHh
Q psy5948 189 LKVDAQFGGVDQRKIFTLAEKYLPQ--LGYAKRI--HFMNPMVPGLAGGKMSSSEEDSKIDLLD-----APALVKKKLKK 259 (549)
Q Consensus 189 ~~~d~~~gG~DQ~~~~~~~r~l~~~--~~~~~~~--~l~~plL~~l~G~KMSKS~~~s~I~L~D-----sp~~i~kKI~~ 259 (549)
+-+|+.+.|.||.. +=+++-++-. +..+.|+ .+.|.++.+.+|+|||||.|| .|++.| .++.++=.+..
T Consensus 535 yP~dl~~~G~Dii~-fW~a~m~~~~~~~~~~~Pf~~v~~hg~v~~~~G~KMSKS~GN-~i~p~~~i~~ygaDalR~~l~~ 612 (958)
T PLN02943 535 YPTTVLETGHDILF-FWVARMVMMGIEFTGTVPFSYVYLHGLIRDSQGRKMSKTLGN-VIDPLDTIKEFGTDALRFTLAL 612 (958)
T ss_pred CCCeEEEEeehHHH-HHHHHHHHhhhhhcCCCChheEEEeccEECCCCCcccCcCCC-CCCHHHHHHhcCChHHHHHHHh
Confidence 45788889999863 2222322211 1112232 456788999999999999996 777765 45556554543
No 133
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=85.30 E-value=1.6 Score=49.06 Aligned_cols=76 Identities=18% Similarity=0.158 Sum_probs=41.6
Q ss_pred eEEEeecCC--CccchhhhHHH-H---HHHHHH-HcCCcEEEEEe-CceeeecCC---CChhHHHHHHHHHHHHHHHHHH
Q psy5948 49 KIYWGTATT--GRPHIAYFVPM-S---KIADFL-RAGCEVTILFA-DLHAYLDNM---KAPWELLALRTKYYEESIKAML 117 (549)
Q Consensus 49 ~v~~Gi~PT--G~lHIGn~~~~-~---~l~~l~-~~G~~v~ilIa-D~~a~~~~~---~~~~~~~~~~~~~~~~~i~~~l 117 (549)
.+.+.--|+ |.+||||+++. + .+.+++ ..|++|++..+ |.|..-.-. ....++.+....+. ..+...+
T Consensus 5 ~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~-~~~~~~~ 83 (556)
T PRK12268 5 ILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYH-EEHKEDF 83 (556)
T ss_pred EEEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHH-HHHHHHH
Confidence 345555555 89999998864 2 345555 45888877655 444221000 00011223333333 3356788
Q ss_pred HccCCCCC
Q psy5948 118 ESIDVPIS 125 (549)
Q Consensus 118 ~a~Gldp~ 125 (549)
.++|++++
T Consensus 84 ~~l~i~~d 91 (556)
T PRK12268 84 KKLGISYD 91 (556)
T ss_pred HHcCCcCC
Confidence 89999876
No 134
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=85.22 E-value=0.59 Score=54.48 Aligned_cols=59 Identities=25% Similarity=0.366 Sum_probs=36.9
Q ss_pred ccCcEEEecccchhhH-HHHHHhhhhc---CC---Ccee--EEecccccCCCCCCccCCCCCCeeeccC
Q psy5948 189 LKVDAQFGGVDQRKIF-TLAEKYLPQL---GY---AKRI--HFMNPMVPGLAGGKMSSSEEDSKIDLLD 248 (549)
Q Consensus 189 ~~~d~~~gG~DQ~~~~-~~~r~l~~~~---~~---~~~~--~l~~plL~~l~G~KMSKS~~~s~I~L~D 248 (549)
+-+|+-+||.||..++ .++|..-..+ +. ..|+ .++.-++.+.+|+|||||.+| .|.+.+
T Consensus 525 ~PVD~yigG~ehavlHLly~rF~Hkal~d~g~~p~~epf~~L~~qGmVl~~~g~KMSKSKgN-~v~p~~ 592 (814)
T COG0495 525 YPVDLYIGGIEHAVLHLLYFRFFHKALFDEGLVPKDEPFKKLITQGMVLGEEGEKMSKSKGN-VVDPEE 592 (814)
T ss_pred cChheeecchhHHHHHHHHHHHHHHHhcccCcCCCccchhhhhccceEEecCCCccccccCC-CCCHHH
Confidence 4578889999987644 4444332222 21 2232 224456777689999999996 666655
No 135
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=85.19 E-value=1.7 Score=51.15 Aligned_cols=78 Identities=15% Similarity=0.115 Sum_probs=45.0
Q ss_pred CCceEEEeecCC--CccchhhhHHHH---HHHHHHH-cCCcEEEEEe-CceeeecCC---CChhHHHHHHHHHHHHHHHH
Q psy5948 46 RDLKIYWGTATT--GRPHIAYFVPMS---KIADFLR-AGCEVTILFA-DLHAYLDNM---KAPWELLALRTKYYEESIKA 115 (549)
Q Consensus 46 ~~~~v~~Gi~PT--G~lHIGn~~~~~---~l~~l~~-~G~~v~ilIa-D~~a~~~~~---~~~~~~~~~~~~~~~~~i~~ 115 (549)
+++.++.|+ |+ |.+|+||+++.. .+.++++ .|++|.+..| |.|.+-.-. +...++.+...++.+. ++.
T Consensus 32 ~~~~i~~~p-Py~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~-~~~ 109 (805)
T PRK00390 32 KKYYVLDMF-PYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIAN-MKK 109 (805)
T ss_pred CCEEEEccC-CCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHHH-HHH
Confidence 456777775 66 999999998642 2455554 5888876665 555432100 0001122333344433 567
Q ss_pred HHHccCCCCC
Q psy5948 116 MLESIDVPIS 125 (549)
Q Consensus 116 ~l~a~Gldp~ 125 (549)
.|.++|+..+
T Consensus 110 ~~~~lGi~~D 119 (805)
T PRK00390 110 QLKSLGFSYD 119 (805)
T ss_pred HHHHhCCccc
Confidence 8889999654
No 136
>PLN02610 probable methionyl-tRNA synthetase
Probab=84.89 E-value=1.6 Score=51.39 Aligned_cols=78 Identities=14% Similarity=0.194 Sum_probs=44.8
Q ss_pred CceEEEee-cCCCccchhhhHH-HH---HHHHHHH-cCCcEEEEEe-CceeeecCC---CChhHHHHHHHHHHHHHHHHH
Q psy5948 47 DLKIYWGT-ATTGRPHIAYFVP-MS---KIADFLR-AGCEVTILFA-DLHAYLDNM---KAPWELLALRTKYYEESIKAM 116 (549)
Q Consensus 47 ~~~v~~Gi-~PTG~lHIGn~~~-~~---~l~~l~~-~G~~v~ilIa-D~~a~~~~~---~~~~~~~~~~~~~~~~~i~~~ 116 (549)
++.|.+.+ -|+|.+||||+.+ .+ .+.++++ .|++++++.| |-|..-.-. ....++.+....+.+ .++.+
T Consensus 18 ~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~~-~~~~~ 96 (801)
T PLN02610 18 NILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKYHA-IHKEV 96 (801)
T ss_pred CEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHHHH-HHHHH
Confidence 34444433 4679999999984 22 3455554 6999987776 545542100 000122333333333 45678
Q ss_pred HHccCCCCC
Q psy5948 117 LESIDVPIS 125 (549)
Q Consensus 117 l~a~Gldp~ 125 (549)
|.++|++.+
T Consensus 97 ~~~l~i~~D 105 (801)
T PLN02610 97 YDWFDISFD 105 (801)
T ss_pred HHHcCCccc
Confidence 889999987
No 137
>PLN02224 methionine-tRNA ligase
Probab=84.01 E-value=0.83 Score=52.04 Aligned_cols=68 Identities=16% Similarity=0.187 Sum_probs=39.6
Q ss_pred cCcEEEecccchhhHHH-HHHhhhhcCCCce-eEEecccccCCCCCCccCCCCCCeeeccC-----CHHHHHHHHHh
Q psy5948 190 KVDAQFGGVDQRKIFTL-AEKYLPQLGYAKR-IHFMNPMVPGLAGGKMSSSEEDSKIDLLD-----APALVKKKLKK 259 (549)
Q Consensus 190 ~~d~~~gG~DQ~~~~~~-~r~l~~~~~~~~~-~~l~~plL~~l~G~KMSKS~~~s~I~L~D-----sp~~i~kKI~~ 259 (549)
..++.+.|.|-..++.+ ---+.-..+...| -.+.+-+ ..++|+|||||.|+ .|++.| +++.++=.+.+
T Consensus 321 ~~~v~~iGKDii~fH~i~wpa~l~~~g~~~P~~i~~~g~-l~~eG~KMSKS~GN-~i~p~e~l~~ygaD~~R~yLl~ 395 (616)
T PLN02224 321 PASLHLIGKDILRFHAVYWPAMLMSAGLELPKMVFGHGF-LTKDGMKMGKSLGN-TLEPFELVQKFGPDAVRYFFLR 395 (616)
T ss_pred CcceEEEeecccccHHHHHHHHHHHCCCCCCcEEEeccc-EecCCccccccCCc-cCCHHHHHHHcCcHHHHHHHHh
Confidence 45788999997664322 1111112243333 3334455 46899999999996 787765 44444444444
No 138
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=83.25 E-value=1.6 Score=46.87 Aligned_cols=35 Identities=26% Similarity=0.249 Sum_probs=23.9
Q ss_pred cCCCccchhhhHHHH---HHHHHHH-cCCcEEEEEe-Cce
Q psy5948 55 ATTGRPHIAYFVPMS---KIADFLR-AGCEVTILFA-DLH 89 (549)
Q Consensus 55 ~PTG~lHIGn~~~~~---~l~~l~~-~G~~v~ilIa-D~~ 89 (549)
-|+|.+||||+++.. .+.++++ .|++|.+..| |-|
T Consensus 11 y~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~h 50 (382)
T cd00817 11 NVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHA 50 (382)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCC
Confidence 468999999998643 2455554 5888866554 555
No 139
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=83.12 E-value=3.2 Score=46.03 Aligned_cols=80 Identities=23% Similarity=0.262 Sum_probs=43.5
Q ss_pred EeecCCCccchhhhHHHH---HHHHHH-HcCCcEEEEEe-Cceeeec-C--CCChhHHHHHHHHHHHHHHHHHHHccCCC
Q psy5948 52 WGTATTGRPHIAYFVPMS---KIADFL-RAGCEVTILFA-DLHAYLD-N--MKAPWELLALRTKYYEESIKAMLESIDVP 123 (549)
Q Consensus 52 ~Gi~PTG~lHIGn~~~~~---~l~~l~-~~G~~v~ilIa-D~~a~~~-~--~~~~~~~~~~~~~~~~~~i~~~l~a~Gld 123 (549)
.+-.|+|.+||||+++++ .+.+++ ..|+++.+..+ |.|..-. . .....+..+....+.. .+...|.++|++
T Consensus 8 ~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~-~~~~~l~~l~I~ 86 (511)
T PRK11893 8 PIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSA-AFKRLWEALNIS 86 (511)
T ss_pred CCCCCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHH-HHHHHHHHhCCC
Confidence 345678999999987643 244454 46999966554 4342100 0 0000112233333333 456788999998
Q ss_pred CCeeEEEEccc
Q psy5948 124 ISKLKFVKGTD 134 (549)
Q Consensus 124 p~k~~i~~qS~ 134 (549)
++ .++..++
T Consensus 87 ~D--~~~~t~~ 95 (511)
T PRK11893 87 YD--DFIRTTD 95 (511)
T ss_pred cC--CceeCCC
Confidence 77 3344444
No 140
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=82.08 E-value=0.48 Score=56.03 Aligned_cols=69 Identities=25% Similarity=0.299 Sum_probs=43.5
Q ss_pred ccCcEEEecccc-hhhHHHHHHhh---hhcC---CCcee--EEecccccC----CCCC----------------------
Q psy5948 189 LKVDAQFGGVDQ-RKIFTLAEKYL---PQLG---YAKRI--HFMNPMVPG----LAGG---------------------- 233 (549)
Q Consensus 189 ~~~d~~~gG~DQ-~~~~~~~r~l~---~~~~---~~~~~--~l~~plL~~----l~G~---------------------- 233 (549)
+-+|+-++|.|| .-|+-++|-+. ...+ ...|| .+++.++.+ -+|+
T Consensus 519 ~PvD~yi~G~dhailHLlyaRf~~~~l~~~~~~~~~~Pfk~l~~~G~Vl~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 598 (842)
T TIGR00396 519 LPVDLYIGGAEHAILHLLYARFWHKFLYDIGYVSTKEPFKKLINQGMVLGFYYPPNGKSPPDELTERDEKAKDKSGGELV 598 (842)
T ss_pred CCCcEeeccHHHHHHHHHHHHHHHHHHHhccccCCCccHHHHhccceEEeeeecCCCCccChhhhccccccccccCCccc
Confidence 458999999999 45555555432 1111 23343 345667777 6777
Q ss_pred -----CccCCCCCCeeeccC-----CHHHHHHHHH
Q psy5948 234 -----KMSSSEEDSKIDLLD-----APALVKKKLK 258 (549)
Q Consensus 234 -----KMSKS~~~s~I~L~D-----sp~~i~kKI~ 258 (549)
|||||.|| .|.+.| .++.++=.++
T Consensus 599 ~~~~~KMSKS~GN-~v~p~~ii~~ygaDalRl~~l 632 (842)
T TIGR00396 599 VVGYEKMSKSKGN-GIDPQEIVKKHGADALRLYIM 632 (842)
T ss_pred ccchhhhhhcCCC-cCCHHHHHHHcCchHHHHHHH
Confidence 99999996 676654 4455555555
No 141
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=81.83 E-value=1.5 Score=46.20 Aligned_cols=37 Identities=22% Similarity=0.191 Sum_probs=24.2
Q ss_pred cCCCccchhhhHHHH---HHHHHH-HcCCcEEEEEe-Cceee
Q psy5948 55 ATTGRPHIAYFVPMS---KIADFL-RAGCEVTILFA-DLHAY 91 (549)
Q Consensus 55 ~PTG~lHIGn~~~~~---~l~~l~-~~G~~v~ilIa-D~~a~ 91 (549)
.|+|.+||||+++.. .+.+++ ..|++|.+..+ |.|.+
T Consensus 11 ~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~ 52 (338)
T cd00818 11 YANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGL 52 (338)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCc
Confidence 468999999998643 244444 45888865544 54443
No 142
>PLN02563 aminoacyl-tRNA ligase
Probab=81.28 E-value=0.55 Score=56.14 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=16.0
Q ss_pred ccCcEEEecccc-hhhHHHHHHh
Q psy5948 189 LKVDAQFGGVDQ-RKIFTLAEKY 210 (549)
Q Consensus 189 ~~~d~~~gG~DQ-~~~~~~~r~l 210 (549)
+-+|+-++|.|| ..|+-++|-.
T Consensus 615 ~PvD~yigG~dhailHLlY~Rfw 637 (963)
T PLN02563 615 MPVDLYVGGAEHAVLHLLYARFW 637 (963)
T ss_pred CCCcEeeccHHHHhhHhHHHHHH
Confidence 569999999999 4565555544
No 143
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=81.24 E-value=1.9 Score=44.94 Aligned_cols=70 Identities=14% Similarity=0.155 Sum_probs=38.4
Q ss_pred cCCCccchhhhHHHH---HHHHHH-HcCCcEEEEE-eCceeeecC---CCChhHHHHHHHHHHHHHHHHHHHccCCCCC
Q psy5948 55 ATTGRPHIAYFVPMS---KIADFL-RAGCEVTILF-ADLHAYLDN---MKAPWELLALRTKYYEESIKAMLESIDVPIS 125 (549)
Q Consensus 55 ~PTG~lHIGn~~~~~---~l~~l~-~~G~~v~ilI-aD~~a~~~~---~~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~ 125 (549)
-|+|.+||||+++.+ .+.+++ ..|++|.+.. .|.|..-.- .....++.+....+.+ .+...+.++|+.++
T Consensus 10 y~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~-~~~~~~~~lgi~~d 87 (314)
T cd00812 10 YPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIK-KMKEQLKRMGFSYD 87 (314)
T ss_pred CCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHH-HHHHHHHHhcccee
Confidence 478999999998643 244444 4699985544 344421000 0000122333334433 35678889998765
No 144
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=80.99 E-value=0.97 Score=50.86 Aligned_cols=55 Identities=24% Similarity=0.158 Sum_probs=32.4
Q ss_pred cEEEecccchhhHHH-HHHhhhhcC--CCce-eEEecccccCCCCCCccCCCCCCeeeccC
Q psy5948 192 DAQFGGVDQRKIFTL-AEKYLPQLG--YAKR-IHFMNPMVPGLAGGKMSSSEEDSKIDLLD 248 (549)
Q Consensus 192 d~~~gG~DQ~~~~~~-~r~l~~~~~--~~~~-~~l~~plL~~l~G~KMSKS~~~s~I~L~D 248 (549)
++.+.|.|+...+.+ -.-+....+ ...| -.+.+-++. ++|+|||||.|| .|++.|
T Consensus 289 ~~~~~G~D~~~Fh~~~~p~~l~~~~~~~~~P~~v~~~G~v~-~~G~KMSKS~GN-~I~p~d 347 (556)
T PRK12268 289 SYYFIGKDNIPFHSIIWPAMLLGSGEPLKLPDEIVSSEYLT-LEGGKFSKSRGW-GIWVDD 347 (556)
T ss_pred EEEEEeeccCcchHHHHHHHHHhcCCCCCCCCEeeccCCEE-ECCeeeccCCCc-ccCHHH
Confidence 477789998654432 112222222 2222 344555665 589999999996 677654
No 145
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=80.49 E-value=1.8 Score=48.83 Aligned_cols=57 Identities=25% Similarity=0.218 Sum_probs=41.9
Q ss_pred cCcE--EEecccchhhHHHHHHhhhhcCCCc---eeEEecccccCCCCCCccCCCCCCeeeccC
Q psy5948 190 KVDA--QFGGVDQRKIFTLAEKYLPQLGYAK---RIHFMNPMVPGLAGGKMSSSEEDSKIDLLD 248 (549)
Q Consensus 190 ~~d~--~~gG~DQ~~~~~~~r~l~~~~~~~~---~~~l~~plL~~l~G~KMSKS~~~s~I~L~D 248 (549)
++|. -++|.||.+|+..-..+++.+|+.+ -.++..-++. ++|+||||..|+ .|.|.|
T Consensus 323 ~~d~~IyV~g~dq~~h~~~l~~~~~~lg~~~~~~l~h~~~g~V~-~~g~kmStR~G~-~v~l~d 384 (562)
T PRK12451 323 GFDKALYVVGPEQSLHFNQFFTVLKKLGYTWVDGMEHVPFGLIL-KDGKKMSTRKGR-VVLLEE 384 (562)
T ss_pred CCCEEEEEeCCcHHHHHHHHHHHHHHcCCCcccCeEEEeeeeEe-cCCCCCcCCCCC-eeEHHH
Confidence 4444 4489999999988888888888642 2233333444 578899999995 899987
No 146
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=79.55 E-value=1.8 Score=51.27 Aligned_cols=78 Identities=13% Similarity=0.129 Sum_probs=42.3
Q ss_pred CceEEEee-cCCCccchhhhHHHH---HHHHHHH-cCCcEEEEEe-CceeeecC---CCChhHHHHHHHHHHHHHHHHHH
Q psy5948 47 DLKIYWGT-ATTGRPHIAYFVPMS---KIADFLR-AGCEVTILFA-DLHAYLDN---MKAPWELLALRTKYYEESIKAML 117 (549)
Q Consensus 47 ~~~v~~Gi-~PTG~lHIGn~~~~~---~l~~l~~-~G~~v~ilIa-D~~a~~~~---~~~~~~~~~~~~~~~~~~i~~~l 117 (549)
++.+..|+ -|||.+||||.+... .+.++++ .|++|.+..| |.|.+-.- .+......+....+... +...+
T Consensus 30 k~~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~-~~~~~ 108 (842)
T TIGR00396 30 KYYILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIAN-MKKQL 108 (842)
T ss_pred CEEEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHHcCCCHHHHHHHHHHH-HHHHH
Confidence 34555553 356999999998642 2455554 5999876665 54543100 00001122233333333 45778
Q ss_pred HccCCCCC
Q psy5948 118 ESIDVPIS 125 (549)
Q Consensus 118 ~a~Gldp~ 125 (549)
.++|+..+
T Consensus 109 ~~lG~~~D 116 (842)
T TIGR00396 109 QALGFSYD 116 (842)
T ss_pred HHhCCccc
Confidence 88897654
No 147
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=79.07 E-value=1.6 Score=48.87 Aligned_cols=54 Identities=30% Similarity=0.326 Sum_probs=32.6
Q ss_pred EEEecccchhhHHHH-HHhhhhcCCCce-eEEecccccCCCCCCccCCCCCCeeeccC
Q psy5948 193 AQFGGVDQRKIFTLA-EKYLPQLGYAKR-IHFMNPMVPGLAGGKMSSSEEDSKIDLLD 248 (549)
Q Consensus 193 ~~~gG~DQ~~~~~~~-r~l~~~~~~~~~-~~l~~plL~~l~G~KMSKS~~~s~I~L~D 248 (549)
+.+.|.|....+.+. --+....+..++ -.+.+-++.. +|+|||||.|| .|++.|
T Consensus 285 v~~~G~Di~~~h~~~~~a~l~~~~~~~~~~~~~~g~v~~-~g~KmSKS~Gn-~i~~~d 340 (530)
T TIGR00398 285 IHFIGKDIVRFHTIYWPAMLMGLGLPLPTQVFSHGYLTV-EGGKMSKSLGN-VVDPSD 340 (530)
T ss_pred EEEEecccchhHHHHHHHHHHhCCCCCCCEEEeeccEEE-CCceecccCCc-eecHHH
Confidence 778999986643221 112222343322 3445556654 49999999996 787765
No 148
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=78.47 E-value=0.82 Score=49.23 Aligned_cols=51 Identities=24% Similarity=0.223 Sum_probs=28.1
Q ss_pred EEEecccchhhHHH---HHHhhhhcCCCceeEE-ecccccCCCCCCccCCCCCCeeecc
Q psy5948 193 AQFGGVDQRKIFTL---AEKYLPQLGYAKRIHF-MNPMVPGLAGGKMSSSEEDSKIDLL 247 (549)
Q Consensus 193 ~~~gG~DQ~~~~~~---~r~l~~~~~~~~~~~l-~~plL~~l~G~KMSKS~~~s~I~L~ 247 (549)
+++.|.|-...+.+ +.-++ .+...|-.+ .+-+++ ++|+|||||.++ .||..
T Consensus 285 v~~iGkDi~~fH~i~~pa~l~a--~~~~lP~~i~~~~~~~-~~g~K~SkS~gn-~i~~~ 339 (391)
T PF09334_consen 285 VHFIGKDIIRFHAIYWPAMLLA--AGLPLPRRIVVHGFLT-LDGEKMSKSRGN-VIWPD 339 (391)
T ss_dssp EEEEEGGGHHHHHTHHHHHHHH--CTB---SEEEEE--EE-ETTCCEETTTTE-SSBHH
T ss_pred EEEEccchhHHHHHHhHHHHhc--ccCCCCCEEEeeeeEE-ECCeeccccCCc-ccCHH
Confidence 67889996444432 11122 343333333 344444 789999999985 78764
No 149
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=78.25 E-value=2 Score=48.63 Aligned_cols=40 Identities=20% Similarity=0.284 Sum_probs=30.1
Q ss_pred EEeecCCCccchhhhHHHH---HHHHHHH-cCCcE--EEEEeCcee
Q psy5948 51 YWGTATTGRPHIAYFVPMS---KIADFLR-AGCEV--TILFADLHA 90 (549)
Q Consensus 51 ~~Gi~PTG~lHIGn~~~~~---~l~~l~~-~G~~v--~ilIaD~~a 90 (549)
|++--|+|++||||.+..+ .+.++.+ .|++| ...|+||=.
T Consensus 118 ~~spn~~~~~hiGh~r~~~~gd~l~r~~~~~g~~v~r~~yinD~G~ 163 (566)
T TIGR00456 118 FSSANPAGPLHIGHLRNAIIGDSLARILEFLGYDVIREYYVNDWGR 163 (566)
T ss_pred ecCCCCCCCCchhhhHHHHHHHHHHHHHHHCCCCeeEEeeecchHH
Confidence 8999999999999998654 2555554 58888 577777433
No 150
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=78.01 E-value=1.9 Score=48.78 Aligned_cols=38 Identities=13% Similarity=0.144 Sum_probs=29.4
Q ss_pred EEeecCCCccchhhhHHHH---HHHHHHH-cCCcE--EEEEeCc
Q psy5948 51 YWGTATTGRPHIAYFVPMS---KIADFLR-AGCEV--TILFADL 88 (549)
Q Consensus 51 ~~Gi~PTG~lHIGn~~~~~---~l~~l~~-~G~~v--~ilIaD~ 88 (549)
|+.--|||+||+||++..+ .+.++.+ .|++| ...|+||
T Consensus 119 ~sSpNp~kplHvGH~R~aiiGd~l~ril~~~G~~V~r~nyinD~ 162 (562)
T PRK12451 119 YSSPNIAKPFSMGHLRSTMIGNALKHIAEKCGYEVVGINYIGDW 162 (562)
T ss_pred ecCCCCCCCcccchhhhHHHHHHHHHHHHHCCCCeEEEeeecCc
Confidence 8999999999999999643 3666654 59988 5667774
No 151
>PLN02286 arginine-tRNA ligase
Probab=77.63 E-value=1.6 Score=49.39 Aligned_cols=38 Identities=18% Similarity=0.262 Sum_probs=29.4
Q ss_pred EEeecCCCccchhhhHHHH---HHHHHHH-cCCcE--EEEEeCc
Q psy5948 51 YWGTATTGRPHIAYFVPMS---KIADFLR-AGCEV--TILFADL 88 (549)
Q Consensus 51 ~~Gi~PTG~lHIGn~~~~~---~l~~l~~-~G~~v--~ilIaD~ 88 (549)
|+.--|||+||+||++..+ .+.++.+ .|++| ...|+||
T Consensus 123 fsSpNp~kplHvGHlRsaiiGdsLaril~~~G~~V~r~nyinD~ 166 (576)
T PLN02286 123 FSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDW 166 (576)
T ss_pred ecCCCCCCCCccccccchhhHHHHHHHHHHcCCceEEEEeecch
Confidence 8999999999999998543 3666664 59888 6667774
No 152
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=74.97 E-value=0.62 Score=53.09 Aligned_cols=50 Identities=12% Similarity=0.199 Sum_probs=46.4
Q ss_pred EecCCC-CCceEEEEEEcCCCCCEEEEeCCccccccccCCCCEEEEEEeeccce
Q psy5948 383 VSRHPD-AEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCNLKPAK 435 (549)
Q Consensus 383 v~~hp~-adkL~v~~vd~G~~~~~~Ivsg~~~~~~~~~l~g~~v~v~~nlk~~k 435 (549)
|+..|. +.+|.-.+.|.|.+..|+|.||+..+|. +|+|+..+.+|| +||.
T Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~-~pr~ 659 (659)
T PTZ00385 609 CANVRELRRVIMELGQRGGENGLPTAGGRLSEWRI--TLTFAIIRFICG-TPRR 659 (659)
T ss_pred hhhchHHHHHHhceecccCCCCccchhHHHHHHHH--HHhcceeEEEeC-CCCC
Confidence 888999 9999999999999999999999999997 799999999999 8873
No 153
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=69.95 E-value=2.1 Score=50.52 Aligned_cols=64 Identities=25% Similarity=0.265 Sum_probs=38.8
Q ss_pred ccCcEEEecccc-hhhHHHHHHhhhh---cC---CCcee--EEecccccCCCCCCccCCCCCCeeeccC-----CHHHHH
Q psy5948 189 LKVDAQFGGVDQ-RKIFTLAEKYLPQ---LG---YAKRI--HFMNPMVPGLAGGKMSSSEEDSKIDLLD-----APALVK 254 (549)
Q Consensus 189 ~~~d~~~gG~DQ-~~~~~~~r~l~~~---~~---~~~~~--~l~~plL~~l~G~KMSKS~~~s~I~L~D-----sp~~i~ 254 (549)
+-+|+-++|.|| ..|+-++|-.... .+ .+.|+ .+++.++ |||||.|| .|.+.| .++.++
T Consensus 522 ~P~Dly~~G~D~~i~hL~y~Rf~~~~l~~~~~~~~~~Pfk~v~~~G~v------KMSKS~GN-~i~p~~~i~~ygaD~lR 594 (805)
T PRK00390 522 LPVDQYIGGIEHAVLHLLYARFFTKVLRDLGLVSSDEPFKKLLTQGMV------KMSKSKGN-VVDPDDIIEKYGADTAR 594 (805)
T ss_pred CCCcEEeccHHHHHHHHHHHHHHHHHHHHhhcccCCcchhhheecCcE------EeCCCCCC-CCCHHHHHHHcChHHHH
Confidence 458999999999 4566555533211 11 12333 3345555 99999996 666654 455565
Q ss_pred HHHHh
Q psy5948 255 KKLKK 259 (549)
Q Consensus 255 kKI~~ 259 (549)
=.+..
T Consensus 595 l~l~~ 599 (805)
T PRK00390 595 LFEMF 599 (805)
T ss_pred HHHHh
Confidence 55554
No 154
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=67.28 E-value=2.4 Score=49.72 Aligned_cols=25 Identities=40% Similarity=0.509 Sum_probs=19.7
Q ss_pred ecccccCCCCCCccCCCCCCeeeccC
Q psy5948 223 MNPMVPGLAGGKMSSSEEDSKIDLLD 248 (549)
Q Consensus 223 ~~plL~~l~G~KMSKS~~~s~I~L~D 248 (549)
.|.++.+-+|.|||||.|| .|...|
T Consensus 514 ihGLVrDe~G~KMSKS~GN-vIDP~d 538 (877)
T COG0525 514 IHGLVRDEQGRKMSKSKGN-VIDPLD 538 (877)
T ss_pred EeeeEEcCCCCCCcccCCC-cCCHHH
Confidence 4678888899999999996 554443
No 155
>KOG0433|consensus
Probab=65.86 E-value=5.9 Score=45.33 Aligned_cols=50 Identities=24% Similarity=0.191 Sum_probs=31.7
Q ss_pred cCcEEEecccch-hhHHH--HHHhhhhcCCCcee--EEecccccCCCCCCccCCCCC
Q psy5948 190 KVDAQFGGVDQR-KIFTL--AEKYLPQLGYAKRI--HFMNPMVPGLAGGKMSSSEED 241 (549)
Q Consensus 190 ~~d~~~gG~DQ~-~~~~~--~r~l~~~~~~~~~~--~l~~plL~~l~G~KMSKS~~~ 241 (549)
-+|+.+-|.||. +-|.. -..++-+ + +.|+ .+++-+..+-+|.|||||.||
T Consensus 566 ~aDv~LEG~DQ~rGWFQSsLLTsvA~q-~-kAPYk~vivHGFtlDE~G~KMSKSlGN 620 (937)
T KOG0433|consen 566 VADVYLEGVDQFRGWFQSSLLTSVAVQ-N-KAPYKKVIVHGFTLDENGNKMSKSLGN 620 (937)
T ss_pred ceeeEEecchhcchHHHHHHHHHHHHh-c-cCCchheeeeeeEecCCccchhhcccC
Confidence 367888899994 33321 1122211 1 1222 457788999999999999996
No 156
>KOG0434|consensus
Probab=62.10 E-value=4 Score=46.28 Aligned_cols=88 Identities=24% Similarity=0.375 Sum_probs=52.7
Q ss_pred cCcEEEecccchh-----hHHHHHHhhhhcCCCcee--EEecccccCCCCCCccCCCCCCeeeccCCHHHHHHHHHh-cc
Q psy5948 190 KVDAQFGGVDQRK-----IFTLAEKYLPQLGYAKRI--HFMNPMVPGLAGGKMSSSEEDSKIDLLDAPALVKKKLKK-AF 261 (549)
Q Consensus 190 ~~d~~~gG~DQ~~-----~~~~~r~l~~~~~~~~~~--~l~~plL~~l~G~KMSKS~~~s~I~L~Dsp~~i~kKI~~-A~ 261 (549)
-+|++--|.||.. .+.++..+.. +||+ .+.+-++...||+||||+..| -.+|-.|-.|--. |.
T Consensus 554 PadFIaEGlDQTRGWFYTL~VlsT~LF~----kppfkNvIvnGlVLAeDG~KMSKrlkN-----YPdP~~iinkYGADal 624 (1070)
T KOG0434|consen 554 PADFIAEGLDQTRGWFYTLLVLSTALFG----KPPFKNVIVNGLVLAEDGKKMSKRLKN-----YPDPSLIINKYGADAL 624 (1070)
T ss_pred chHhhhhccccccchhhHHHHHHHHHcC----CCcchheeEeeeEEecccHHHhhhhhc-----CCCHHHHHHhhcchhe
Confidence 3566667999933 2233444432 2443 345678888899999999864 2345444443211 10
Q ss_pred C-----CC----CC--CCcchhhchhhhheecccCC
Q psy5948 262 C-----EP----GN--VEDNGVLSFLKHVVFSLLKP 286 (549)
Q Consensus 262 t-----d~----~~--~~~~~v~~~~k~~lf~~~~~ 286 (549)
- .| .+ -...+|.+.++.+++|||.+
T Consensus 625 RlYLInSPVvraE~LkFkeeGVrevvk~v~lPW~Ns 660 (1070)
T KOG0434|consen 625 RLYLINSPVVRAENLKFKEEGVREVVKDVLLPWYNS 660 (1070)
T ss_pred eeeeecCccccccccccchhhHHHHHHhhhhhhhHH
Confidence 0 11 11 24578999999999999876
No 157
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=61.67 E-value=9.1 Score=44.94 Aligned_cols=74 Identities=20% Similarity=0.186 Sum_probs=41.6
Q ss_pred CceEEEee-cCCCccchhhhHHHH---HHHHHHH-cCCcEEEEEeCceeeecC--------CCChhHHHHHHHHHHHHHH
Q psy5948 47 DLKIYWGT-ATTGRPHIAYFVPMS---KIADFLR-AGCEVTILFADLHAYLDN--------MKAPWELLALRTKYYEESI 113 (549)
Q Consensus 47 ~~~v~~Gi-~PTG~lHIGn~~~~~---~l~~l~~-~G~~v~ilIaD~~a~~~~--------~~~~~~~~~~~~~~~~~~i 113 (549)
++.|..=| -|||.||+||.+.+. .+.++.+ .|++|..-+| |||.=.. -.+|. . ..+++...+
T Consensus 35 Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMG-wdafGlPae~~A~~~~~~P~---~-wt~~ni~~~ 109 (814)
T COG0495 35 KFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMG-WDAFGLPAENAAIKIGTDPA---K-WTYYNIAYM 109 (814)
T ss_pred ceEEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCc-ccccCchHHHHHHHhCCChH---H-HHHHHHHHH
Confidence 44444433 499999999988542 3566665 4888776554 5554110 01221 1 222333335
Q ss_pred HHHHHccCCCCC
Q psy5948 114 KAMLESIDVPIS 125 (549)
Q Consensus 114 ~~~l~a~Gldp~ 125 (549)
+..+.++|+..+
T Consensus 110 k~qlk~lG~siD 121 (814)
T COG0495 110 KKQLKSLGFSID 121 (814)
T ss_pred HHHHHHhCCccc
Confidence 567788888655
No 158
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=60.91 E-value=42 Score=32.13 Aligned_cols=70 Identities=20% Similarity=0.262 Sum_probs=39.0
Q ss_pred ecCCCccchhhhHHHHHHHHHHHcCCcEEEEEeCceeeecCCCChhHHHHHHHHHHHHHHHHHHHccCCCCCeeEEEEcc
Q psy5948 54 TATTGRPHIAYFVPMSKIADFLRAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGT 133 (549)
Q Consensus 54 i~PTG~lHIGn~~~~~~l~~l~~~G~~v~ilIaD~~a~~~~~~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS 133 (549)
|+| +|+||+..+..+.. +.+ ++++.++.....-. .+.+++ ...|. .++...+...|++.+++.|+-=.
T Consensus 8 F~P---~H~GHl~~i~~a~~--~~~-~vii~i~s~~~~~~-~~~p~~-~~eR~----~mi~~~~~~~~~~~~rv~i~pi~ 75 (181)
T cd02168 8 FQP---FHNGHLAVVLIALE--KAK-KVIILIGSARTARN-IKNPWT-SEERE----VMIEAALSDAGADLARVHFRPLR 75 (181)
T ss_pred cCC---CCHHHHHHHHHHHH--HCC-eEEEEeCCCCCCCC-CCCCcC-HHHHH----HHHHHHHhccCCCcceEEEEecC
Confidence 555 89999876533222 233 78888876532111 122222 11222 23445566779999988888655
Q ss_pred cc
Q psy5948 134 DY 135 (549)
Q Consensus 134 ~~ 135 (549)
|.
T Consensus 76 D~ 77 (181)
T cd02168 76 DH 77 (181)
T ss_pred CC
Confidence 54
No 159
>KOG2007|consensus
Probab=60.90 E-value=6.3 Score=43.21 Aligned_cols=67 Identities=18% Similarity=0.139 Sum_probs=41.4
Q ss_pred hHHhhcccccccCcEEEecccch-hhH--HHHHHhhhhcCCC--ceeEEecccccCCCCCCccCCCCCCeeeccC
Q psy5948 179 PGLQALDEEYLKVDAQFGGVDQR-KIF--TLAEKYLPQLGYA--KRIHFMNPMVPGLAGGKMSSSEEDSKIDLLD 248 (549)
Q Consensus 179 P~LqAaDil~~~~d~~~gG~DQ~-~~~--~~~r~l~~~~~~~--~~~~l~~plL~~l~G~KMSKS~~~s~I~L~D 248 (549)
.-.||.+++-.+.||--||.|-. +|+ ++|.-=+ .+... --+.+|+--| ...|.|||||.+| .|-+.+
T Consensus 247 CSaMas~~lG~~lDIH~GG~DL~FPHHeNEiAQ~eA-~~~~~~wVnYflHtGhL-~i~g~KMSKSLkN-FiTIke 318 (586)
T KOG2007|consen 247 CSAMASAILGSQLDIHGGGIDLAFPHHENEIAQSEA-AFDDSQWVNYFLHTGHL-TINGEKMSKSLKN-FITIKE 318 (586)
T ss_pred eHHHHHHhhccccceecCcccccCCCcccHHHHHHH-HhcCCccceeEEEcCee-eeccchhhhhhcc-ceeHHH
Confidence 36789999999999988999963 344 2322111 11111 1344554432 3467999999986 666644
No 160
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=57.04 E-value=7.3 Score=45.86 Aligned_cols=37 Identities=24% Similarity=0.246 Sum_probs=27.5
Q ss_pred CCCccchhhhHHH---HHHHHHHH-cCCcEEEEEeCceeee
Q psy5948 56 TTGRPHIAYFVPM---SKIADFLR-AGCEVTILFADLHAYL 92 (549)
Q Consensus 56 PTG~lHIGn~~~~---~~l~~l~~-~G~~v~ilIaD~~a~~ 92 (549)
+||.||+||.+.. -.+.++.+ .|+++.+.-|=.||=+
T Consensus 44 VTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~DhAGI 84 (877)
T COG0525 44 VTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHAGI 84 (877)
T ss_pred CCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCCCCc
Confidence 4999999998842 23556665 5999998888777743
No 161
>PLN02882 aminoacyl-tRNA ligase
Probab=56.92 E-value=20 Score=44.15 Aligned_cols=46 Identities=26% Similarity=0.413 Sum_probs=30.3
Q ss_pred CCceEEEee-cCCCccchhhhHHHH---HHHHHHH-cCCcEEEEEe-Cceee
Q psy5948 46 RDLKIYWGT-ATTGRPHIAYFVPMS---KIADFLR-AGCEVTILFA-DLHAY 91 (549)
Q Consensus 46 ~~~~v~~Gi-~PTG~lHIGn~~~~~---~l~~l~~-~G~~v~ilIa-D~~a~ 91 (549)
.++.++.|- -+||.+|+||.+... .+.++++ .|++|.+..| |-|.+
T Consensus 38 ~~f~~~dgPPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~GwD~hGl 89 (1159)
T PLN02882 38 PEYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDCHGL 89 (1159)
T ss_pred CCEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCccCCCCc
Confidence 346777774 468999999998532 2444554 5988865554 66655
No 162
>KOG0435|consensus
Probab=56.13 E-value=5.9 Score=44.93 Aligned_cols=46 Identities=22% Similarity=0.200 Sum_probs=31.7
Q ss_pred CCceEEEee-cCCCccchhhhHHH---HHHHHHHH-cCCcEEEEEe-Cceee
Q psy5948 46 RDLKIYWGT-ATTGRPHIAYFVPM---SKIADFLR-AGCEVTILFA-DLHAY 91 (549)
Q Consensus 46 ~~~~v~~Gi-~PTG~lHIGn~~~~---~~l~~l~~-~G~~v~ilIa-D~~a~ 91 (549)
++..|++=| -|||.+||||.+.+ -.+.+|++ .|++|+=-+| |...+
T Consensus 57 k~KYiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGL 108 (876)
T KOG0435|consen 57 KKKYILSMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGL 108 (876)
T ss_pred CCceEEEecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcccccCC
Confidence 445787777 59999999998843 24667775 5888875554 44433
No 163
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=55.07 E-value=61 Score=30.33 Aligned_cols=70 Identities=16% Similarity=0.134 Sum_probs=37.0
Q ss_pred ecCCCccchhhhHHHHHHHHHHHcCCcEEEEEeCceeeecCCCChhHHHHHHHHHHHHHHHHHHHccCCCCCeeEEEEcc
Q psy5948 54 TATTGRPHIAYFVPMSKIADFLRAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGT 133 (549)
Q Consensus 54 i~PTG~lHIGn~~~~~~l~~l~~~G~~v~ilIaD~~a~~~~~~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS 133 (549)
|+| +|+||+..+..+. +.--+++++++....... +..+.+.. .|. ++++..+...|++..++.++-..
T Consensus 8 FdP---~H~GHl~~i~~a~---~~~d~l~v~v~s~~~~~~-~~~~~~~~-~R~----~mi~~~~~~~~~~~~~v~v~~~~ 75 (163)
T cd02166 8 FQP---FHLGHLKVIKWIL---EEVDELIIGIGSAQESHT-LENPFTAG-ERV----LMIRRALEEEGIDLSRYYIIPVP 75 (163)
T ss_pred cCC---CCHHHHHHHHHHH---HHCCEEEEEecCCCCCCC-CCCCCCHH-HHH----HHHHHHHHhcCCCcCeEEEEecC
Confidence 566 9999987643332 222456666654332211 12233211 222 23444555557777888887666
Q ss_pred cc
Q psy5948 134 DY 135 (549)
Q Consensus 134 ~~ 135 (549)
|.
T Consensus 76 d~ 77 (163)
T cd02166 76 DI 77 (163)
T ss_pred CC
Confidence 55
No 164
>PLN02563 aminoacyl-tRNA ligase
Probab=53.87 E-value=8.9 Score=46.12 Aligned_cols=45 Identities=16% Similarity=0.135 Sum_probs=30.3
Q ss_pred CceEEEee-cCCCc-cchhhhHHHH---HHHHHHH-cCCcEEEEEe-Cceee
Q psy5948 47 DLKIYWGT-ATTGR-PHIAYFVPMS---KIADFLR-AGCEVTILFA-DLHAY 91 (549)
Q Consensus 47 ~~~v~~Gi-~PTG~-lHIGn~~~~~---~l~~l~~-~G~~v~ilIa-D~~a~ 91 (549)
++.+.+|+ -|+|. +|+||.+... .+.++++ .|++|.+..| |.|.+
T Consensus 111 k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~Gl 162 (963)
T PLN02563 111 KFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGL 162 (963)
T ss_pred CEEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCc
Confidence 35666675 56797 9999988642 2555554 5999876665 65655
No 165
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=52.94 E-value=8.3 Score=45.52 Aligned_cols=45 Identities=22% Similarity=0.198 Sum_probs=30.1
Q ss_pred CCceEEE-eecCCCccchhhhHHHH---HHHHHHH-cCCcEEEEEe-Ccee
Q psy5948 46 RDLKIYW-GTATTGRPHIAYFVPMS---KIADFLR-AGCEVTILFA-DLHA 90 (549)
Q Consensus 46 ~~~~v~~-Gi~PTG~lHIGn~~~~~---~l~~l~~-~G~~v~ilIa-D~~a 90 (549)
+++.+.+ .--|||.+||||++... .+.++++ .|+++.+..| |-|+
T Consensus 38 ~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~~G 88 (800)
T PRK13208 38 PVYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNG 88 (800)
T ss_pred CcEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCCCc
Confidence 4556666 45688999999998643 2455554 5988877665 5444
No 166
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=49.74 E-value=20 Score=40.96 Aligned_cols=46 Identities=24% Similarity=0.212 Sum_probs=26.8
Q ss_pred CCceEEEee-cCCCccchhhhHHHH---HHHHHHH-cCCcEEEEEe-Cceee
Q psy5948 46 RDLKIYWGT-ATTGRPHIAYFVPMS---KIADFLR-AGCEVTILFA-DLHAY 91 (549)
Q Consensus 46 ~~~~v~~Gi-~PTG~lHIGn~~~~~---~l~~l~~-~G~~v~ilIa-D~~a~ 91 (549)
+++.+..|. -+||.||+||.+... .+.++.+ .|+++.+..| |-|.+
T Consensus 23 ~~f~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Gl 74 (601)
T PF00133_consen 23 PKFFIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGL 74 (601)
T ss_dssp GEEEEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SH
T ss_pred CcEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCc
Confidence 345555553 568999999998643 2455555 4888866554 66655
No 167
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=48.98 E-value=10 Score=45.10 Aligned_cols=46 Identities=28% Similarity=0.226 Sum_probs=30.3
Q ss_pred CCceEEEee-cCCCccchhhhHHHH---HHHHHHH-cCCcEEEEEe-Cceee
Q psy5948 46 RDLKIYWGT-ATTGRPHIAYFVPMS---KIADFLR-AGCEVTILFA-DLHAY 91 (549)
Q Consensus 46 ~~~~v~~Gi-~PTG~lHIGn~~~~~---~l~~l~~-~G~~v~ilIa-D~~a~ 91 (549)
+++.+++|. -+||.+|+||.+... .+.++++ .|+++.+..| |-|++
T Consensus 33 ~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl 84 (861)
T TIGR00422 33 PPFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHAGI 84 (861)
T ss_pred CeEEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCcCCC
Confidence 456666654 578999999998542 2445554 5999877666 44444
No 168
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=48.54 E-value=11 Score=45.65 Aligned_cols=46 Identities=20% Similarity=0.204 Sum_probs=30.2
Q ss_pred CCceEEEee-cCCCccchhhhHHHH---HHHHHHH-cCCcEEEEEe-Cceee
Q psy5948 46 RDLKIYWGT-ATTGRPHIAYFVPMS---KIADFLR-AGCEVTILFA-DLHAY 91 (549)
Q Consensus 46 ~~~~v~~Gi-~PTG~lHIGn~~~~~---~l~~l~~-~G~~v~ilIa-D~~a~ 91 (549)
+++.+.+|. -|||.+|+||.+... .+.++++ .|+++.+..| |-|++
T Consensus 60 ~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl 111 (995)
T PTZ00419 60 KKFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAGI 111 (995)
T ss_pred CeEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCch
Confidence 345555554 478999999998642 2455554 5999977665 55544
No 169
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=47.53 E-value=11 Score=45.90 Aligned_cols=46 Identities=17% Similarity=0.208 Sum_probs=31.0
Q ss_pred CCceEEEee-cCCCccchhhhHHHH---HHHHHHH-cCCcEEEEEe-Cceee
Q psy5948 46 RDLKIYWGT-ATTGRPHIAYFVPMS---KIADFLR-AGCEVTILFA-DLHAY 91 (549)
Q Consensus 46 ~~~~v~~Gi-~PTG~lHIGn~~~~~---~l~~l~~-~G~~v~ilIa-D~~a~ 91 (549)
.++.++.|. -+||.+|+||.+... .+.++++ .|+++.+..| |-|++
T Consensus 48 ~~f~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~~Gl 99 (1052)
T PRK14900 48 PPFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDHAGI 99 (1052)
T ss_pred CCEEEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCccch
Confidence 456676665 578999999998642 2455554 5999977666 44444
No 170
>PLN02381 valyl-tRNA synthetase
Probab=44.77 E-value=14 Score=45.03 Aligned_cols=46 Identities=20% Similarity=0.206 Sum_probs=30.3
Q ss_pred CCceEEEee-cCCCccchhhhHHHH---HHHHHHH-cCCcEEEEEe-Cceee
Q psy5948 46 RDLKIYWGT-ATTGRPHIAYFVPMS---KIADFLR-AGCEVTILFA-DLHAY 91 (549)
Q Consensus 46 ~~~~v~~Gi-~PTG~lHIGn~~~~~---~l~~l~~-~G~~v~ilIa-D~~a~ 91 (549)
+++.+.+|. -+||.||+||.+... .+.++.+ .|+++.+..| |-|++
T Consensus 128 ~~f~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~~Gl 179 (1066)
T PLN02381 128 PPFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHAGI 179 (1066)
T ss_pred CcEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCcC
Confidence 345666664 578999999998542 2455554 5999877666 54444
No 171
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=43.40 E-value=66 Score=37.13 Aligned_cols=71 Identities=18% Similarity=0.271 Sum_probs=40.1
Q ss_pred EEeecCCCccchhhhHHHH---HHHHHHH--cCCcEEEEEeCceeeecCCCC-------hhH-HHHHHHHHHHHHHHHHH
Q psy5948 51 YWGTATTGRPHIAYFVPMS---KIADFLR--AGCEVTILFADLHAYLDNMKA-------PWE-LLALRTKYYEESIKAML 117 (549)
Q Consensus 51 ~~Gi~PTG~lHIGn~~~~~---~l~~l~~--~G~~v~ilIaD~~a~~~~~~~-------~~~-~~~~~~~~~~~~i~~~l 117 (549)
.||-.+=+.+||||.+.++ .++++++ .|++|+++.+ .+.+ +| +. ..+ ..+.... +...+..++
T Consensus 65 ~CGPTvYd~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~n-itDi-dD-KIi~~A~~~g~~~~~el~~~-~~~~f~~d~ 140 (651)
T PTZ00399 65 TCGPTVYDSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMN-ITDI-DD-KIIKRAREEKLSIFLELARK-WEKEFFEDM 140 (651)
T ss_pred EeCCCccCCcccccchHHHHHHHHHHHHHHhcCCceEEEeC-CCCc-ch-HHHHHHHHhCCCcHHHHHHH-HHHHHHHHH
Confidence 5676666779999988643 3666666 5998876553 2222 11 00 001 1222223 333355677
Q ss_pred HccCCCCC
Q psy5948 118 ESIDVPIS 125 (549)
Q Consensus 118 ~a~Gldp~ 125 (549)
.++|+.+.
T Consensus 141 ~~Lni~~p 148 (651)
T PTZ00399 141 KALNVRPP 148 (651)
T ss_pred HHcCCCCC
Confidence 88998765
No 172
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=43.05 E-value=14 Score=44.19 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=29.5
Q ss_pred cCCceEEEee-cCCCccchhhhHHHH---HHHHHHH-cCCcEEEEEe-Cceee
Q psy5948 45 ERDLKIYWGT-ATTGRPHIAYFVPMS---KIADFLR-AGCEVTILFA-DLHAY 91 (549)
Q Consensus 45 ~~~~~v~~Gi-~PTG~lHIGn~~~~~---~l~~l~~-~G~~v~ilIa-D~~a~ 91 (549)
++++.+..|. -+||.||+||.+... .+.++++ .|+++.+.-| |-|++
T Consensus 35 ~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gi 87 (874)
T PRK05729 35 KKPFSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDHAGI 87 (874)
T ss_pred CCCEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCccch
Confidence 3455555532 468999999998542 2455554 5998876666 44444
No 173
>PLN02843 isoleucyl-tRNA synthetase
Probab=42.25 E-value=48 Score=40.14 Aligned_cols=45 Identities=20% Similarity=0.213 Sum_probs=28.3
Q ss_pred CCceEEEee-cCCCccchhhhHHHH---HHHHHHH-cCCcEEEEEe-Ccee
Q psy5948 46 RDLKIYWGT-ATTGRPHIAYFVPMS---KIADFLR-AGCEVTILFA-DLHA 90 (549)
Q Consensus 46 ~~~~v~~Gi-~PTG~lHIGn~~~~~---~l~~l~~-~G~~v~ilIa-D~~a 90 (549)
+++.+..|. -+||.+||||.+... .+.++.+ .|+++.+..| |-|.
T Consensus 32 ~~f~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~hG 82 (974)
T PLN02843 32 ESFTLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHG 82 (974)
T ss_pred CCEEEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccCCCC
Confidence 445555554 468999999998542 2444444 5888865554 5553
No 174
>KOG0437|consensus
Probab=41.89 E-value=18 Score=41.57 Aligned_cols=51 Identities=18% Similarity=0.045 Sum_probs=27.4
Q ss_pred ccCcEEEecccchhhHHHH-----HHhhhhcCCCceeEEecccccCCCCCCccCCCCC
Q psy5948 189 LKVDAQFGGVDQRKIFTLA-----EKYLPQLGYAKRIHFMNPMVPGLAGGKMSSSEED 241 (549)
Q Consensus 189 ~~~d~~~gG~DQ~~~~~~~-----r~l~~~~~~~~~~~l~~plL~~l~G~KMSKS~~~ 241 (549)
|-.|+-+.|.|-.+|+-.- ..+.+.-. -|-++...==.-|+++|||||.||
T Consensus 662 YPiDlrvsGKDLi~NHLtfflynHvAl~~~k~--WPkgiraNGHLmLNsEKMSKSTGN 717 (1080)
T KOG0437|consen 662 YPIDLRVSGKDLIPNHLTFFLYNHVALFPEKK--WPKGIRANGHLMLNSEKMSKSTGN 717 (1080)
T ss_pred cceeeeeccccccccceeEeeeehhhhccccc--CccceeeCceEEecchhhccccCC
Confidence 4567888999977765210 11222111 222332211123456899999996
No 175
>KOG0436|consensus
Probab=40.23 E-value=30 Score=37.36 Aligned_cols=38 Identities=24% Similarity=0.287 Sum_probs=24.2
Q ss_pred ecCCCccchhhhHHHH---HHHHHHHcCCcEEEEEe--Cceee
Q psy5948 54 TATTGRPHIAYFVPMS---KIADFLRAGCEVTILFA--DLHAY 91 (549)
Q Consensus 54 i~PTG~lHIGn~~~~~---~l~~l~~~G~~v~ilIa--D~~a~ 91 (549)
|-+.+.+||||+-..+ .+.+||+...+.+++.. |-|.+
T Consensus 48 fYvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGl 90 (578)
T KOG0436|consen 48 FYVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGL 90 (578)
T ss_pred eecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccch
Confidence 4678889999987543 46777865334444443 66655
No 176
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=39.35 E-value=18 Score=43.73 Aligned_cols=46 Identities=20% Similarity=0.373 Sum_probs=30.6
Q ss_pred CCceEEEee-cCCCccchhhhHHHH---HHHHHHH-cCCcEEEEEe-Cceee
Q psy5948 46 RDLKIYWGT-ATTGRPHIAYFVPMS---KIADFLR-AGCEVTILFA-DLHAY 91 (549)
Q Consensus 46 ~~~~v~~Gi-~PTG~lHIGn~~~~~---~l~~l~~-~G~~v~ilIa-D~~a~ 91 (549)
+++.++.|. -+||.+|+||.+... .+.++.+ .|+++....| |-|.+
T Consensus 41 ~~f~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~GwD~~Gl 92 (975)
T PRK06039 41 PEFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWDTHGL 92 (975)
T ss_pred CCEEEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCCcCCCcc
Confidence 456777775 468999999998542 2444554 5888866554 55554
No 177
>PRK00777 phosphopantetheine adenylyltransferase; Provisional
Probab=39.24 E-value=32 Score=32.00 Aligned_cols=49 Identities=14% Similarity=-0.008 Sum_probs=37.2
Q ss_pred cCcEEEecccchhhHHHHHHhhhhcCCCceeEEecccccCCCCCCccCC
Q psy5948 190 KVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGGKMSSS 238 (549)
Q Consensus 190 ~~d~~~gG~DQ~~~~~~~r~l~~~~~~~~~~~l~~plL~~l~G~KMSKS 238 (549)
..|..++|.|||.....-.+...+.|..+.-.+..|++..-+|+|.|+|
T Consensus 88 ~~d~ivvs~et~~~~~~in~~r~~~gl~~l~i~~v~~~~~~~~~~~SSt 136 (153)
T PRK00777 88 DFDAIVVSPETYPGALKINEIRRERGLKPLEIVVIDFVLAEDGKPISST 136 (153)
T ss_pred CCCEEEEChhhhhhHHHHHHHHHHCCCCceEEEEEeeeecCCCCeeeHH
Confidence 4677899999999888777777777776644456677776678888887
No 178
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=37.75 E-value=20 Score=43.19 Aligned_cols=46 Identities=17% Similarity=0.169 Sum_probs=29.3
Q ss_pred CCceEEEee-cCCCccchhhhHHHH---HHHHHHH-cCCcEEEEEe-Cceee
Q psy5948 46 RDLKIYWGT-ATTGRPHIAYFVPMS---KIADFLR-AGCEVTILFA-DLHAY 91 (549)
Q Consensus 46 ~~~~v~~Gi-~PTG~lHIGn~~~~~---~l~~l~~-~G~~v~ilIa-D~~a~ 91 (549)
.++.+..|. -++|.+|+||.+... .+.++++ .|+++.+..| |-|.+
T Consensus 54 ~~f~l~dgPPyanG~lHiGHaln~~lkDii~Ry~rm~G~~v~~~pGwD~hGl 105 (961)
T PRK13804 54 PKFVLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGWDCHGL 105 (961)
T ss_pred CcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHhcCCcccCCCCcCCCCc
Confidence 345666665 467999999998542 2444554 5888855444 65555
No 179
>PLN02943 aminoacyl-tRNA ligase
Probab=36.64 E-value=30 Score=41.75 Aligned_cols=46 Identities=15% Similarity=0.133 Sum_probs=30.6
Q ss_pred CCceEEEe-ecCCCccchhhhHHHH---HHHHHHH-cCCcEEEEEe-Cceee
Q psy5948 46 RDLKIYWG-TATTGRPHIAYFVPMS---KIADFLR-AGCEVTILFA-DLHAY 91 (549)
Q Consensus 46 ~~~~v~~G-i~PTG~lHIGn~~~~~---~l~~l~~-~G~~v~ilIa-D~~a~ 91 (549)
+++.+..| =-+||.+|+||.+... .+.++.+ .|+++.+..| |-|++
T Consensus 88 ~~f~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl 139 (958)
T PLN02943 88 DPFVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHAGI 139 (958)
T ss_pred CCEEEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCcccc
Confidence 34566665 5679999999998542 2444544 6999977666 44444
No 180
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=36.40 E-value=17 Score=43.69 Aligned_cols=41 Identities=17% Similarity=0.135 Sum_probs=26.0
Q ss_pred CCceEEEee-cCCCccchhhhHHHH---HHHHHHH-cCCcEEEEEe
Q psy5948 46 RDLKIYWGT-ATTGRPHIAYFVPMS---KIADFLR-AGCEVTILFA 86 (549)
Q Consensus 46 ~~~~v~~Gi-~PTG~lHIGn~~~~~---~l~~l~~-~G~~v~ilIa 86 (549)
+++.+..|. -+||.||+||.+... .+.++++ .|+++.+..|
T Consensus 25 ~kf~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~G 70 (938)
T TIGR00395 25 EKFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLG 70 (938)
T ss_pred CceEEecCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCCCCc
Confidence 344554443 367999999998642 2555555 5888866443
No 181
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=33.55 E-value=26 Score=41.71 Aligned_cols=46 Identities=20% Similarity=0.182 Sum_probs=30.4
Q ss_pred CCceEEEee-cCCCccchhhhHHHH---HHHHHHH-cCCcEEEEEe-Cceee
Q psy5948 46 RDLKIYWGT-ATTGRPHIAYFVPMS---KIADFLR-AGCEVTILFA-DLHAY 91 (549)
Q Consensus 46 ~~~~v~~Gi-~PTG~lHIGn~~~~~---~l~~l~~-~G~~v~ilIa-D~~a~ 91 (549)
+++.++.|. -|||.+|+||.+... .+.++++ .|+++.+..| |-|++
T Consensus 36 ~~f~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl 87 (861)
T TIGR00392 36 PEFIFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPGWDTHGL 87 (861)
T ss_pred CCeEEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCCCcCCCcc
Confidence 456777777 346899999998542 2455554 5888865554 55544
No 182
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=32.97 E-value=26 Score=42.08 Aligned_cols=46 Identities=17% Similarity=0.166 Sum_probs=28.9
Q ss_pred CCceEEEee-cCCCccchhhhHHHH---HHHHHHH-cCCcEEEEEe-Cceee
Q psy5948 46 RDLKIYWGT-ATTGRPHIAYFVPMS---KIADFLR-AGCEVTILFA-DLHAY 91 (549)
Q Consensus 46 ~~~~v~~Gi-~PTG~lHIGn~~~~~---~l~~l~~-~G~~v~ilIa-D~~a~ 91 (549)
+++.+..|. -+||.+||||.+... .+.++++ .|+++.+..| |-|.+
T Consensus 49 ~~f~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~D~~Gl 100 (912)
T PRK05743 49 PKFILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDCHGL 100 (912)
T ss_pred CcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCCCCcCCCcc
Confidence 345555554 468999999998542 2445554 5888865554 55544
No 183
>TIGR00339 sopT ATP sulphurylase. Members of this family also include the dissimilatory sulfate adenylyltransferase (sat) of the sulfate reducer Archaeoglobus fulgidus.
Probab=30.14 E-value=3.4e+02 Score=29.25 Aligned_cols=35 Identities=20% Similarity=0.003 Sum_probs=27.6
Q ss_pred CHHHHHHHHhcCCceEEEeecCCCccchhhhHHHH
Q psy5948 35 GEDRLNVILKERDLKIYWGTATTGRPHIAYFVPMS 69 (549)
Q Consensus 35 ~~~~L~~~l~~~~~~v~~Gi~PTG~lHIGn~~~~~ 69 (549)
+..++++.++++.-+-.+|||.-.++|.||...+.
T Consensus 170 tP~e~r~~f~~~gw~~Vvafqt~nPiHr~H~~l~~ 204 (383)
T TIGR00339 170 TPAELREEFKERGWDTVVAFQTRNPMHRAHEELTK 204 (383)
T ss_pred CHHHHHHHHHHcCCCeEEEeccCCCCchHHHHHHH
Confidence 46788888887666667779988889999987653
No 184
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=28.02 E-value=39 Score=41.74 Aligned_cols=46 Identities=24% Similarity=0.394 Sum_probs=30.1
Q ss_pred CCceEEEee-cCCCccchhhhHHHH---HHHHHHH-cCCcEEEEEe-Cceee
Q psy5948 46 RDLKIYWGT-ATTGRPHIAYFVPMS---KIADFLR-AGCEVTILFA-DLHAY 91 (549)
Q Consensus 46 ~~~~v~~Gi-~PTG~lHIGn~~~~~---~l~~l~~-~G~~v~ilIa-D~~a~ 91 (549)
+++.++.|- -+||.+|+||.+... .+.++.+ .|++|.+..| |-|.+
T Consensus 102 ~~Fv~~~gPPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~~~~GwD~hGl 153 (1205)
T PTZ00427 102 KAYIFYDGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERKFGWDCHGL 153 (1205)
T ss_pred CcEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeeccCCccCCCCc
Confidence 445667775 468999999998532 2444544 5999866554 55555
No 185
>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=26.51 E-value=2.6e+02 Score=26.45 Aligned_cols=69 Identities=17% Similarity=0.151 Sum_probs=34.4
Q ss_pred ecCCCccchhhhHHHHHHHHHHHcCC-cEEEEEeCceeeecCCCChhHHHHHHHHHHHHHHHHHHHccCCCCCeeEEEEc
Q psy5948 54 TATTGRPHIAYFVPMSKIADFLRAGC-EVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKG 132 (549)
Q Consensus 54 i~PTG~lHIGn~~~~~~l~~l~~~G~-~v~ilIaD~~a~~~~~~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~q 132 (549)
|+| +|.||+..+.. ..+ .+ +++++++....... ...+++.. .|. +++...+...+++..++.++--
T Consensus 9 F~P---~H~GHl~~i~~---a~~-~~d~v~v~i~s~~~~~~-~~~p~~~~-~R~----~mi~~a~~~~~~~~~~~~~~pi 75 (174)
T PRK01153 9 FQP---FHKGHLEVIKW---ILE-EVDELIIGIGSAQESHT-LKNPFTAG-ERI----LMIRKALEEEGIDLSRYYIIPI 75 (174)
T ss_pred cCC---CCHHHHHHHHH---HHH-hCCEEEEEecCCCCCCC-CCCCCCHH-HHH----HHHHHHHhcCCCCcceeeEecC
Confidence 666 99999876433 222 34 45665654322211 12233311 222 3344555556776666666644
Q ss_pred ccc
Q psy5948 133 TDY 135 (549)
Q Consensus 133 S~~ 135 (549)
.|.
T Consensus 76 ~D~ 78 (174)
T PRK01153 76 PDI 78 (174)
T ss_pred CCc
Confidence 443
No 186
>PLN02959 aminoacyl-tRNA ligase
Probab=25.17 E-value=41 Score=41.19 Aligned_cols=31 Identities=26% Similarity=0.356 Sum_probs=21.1
Q ss_pred cCCCccchhhhHHHH---HHHHHHH-cCCcEEEEE
Q psy5948 55 ATTGRPHIAYFVPMS---KIADFLR-AGCEVTILF 85 (549)
Q Consensus 55 ~PTG~lHIGn~~~~~---~l~~l~~-~G~~v~ilI 85 (549)
-++|.|||||.+... .+.++++ .|+++.+..
T Consensus 55 Y~NG~lHiGHa~t~t~~D~i~Rykrm~G~~vlfp~ 89 (1084)
T PLN02959 55 YMNGLLHLGHAFSLSKLEFAAAYHRLRGANVLLPF 89 (1084)
T ss_pred CCCCCcchhhHHHHHHHHHHHHHHHcCCCccCCCC
Confidence 347999999999653 2555665 477775544
No 187
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=25.13 E-value=2.9e+02 Score=26.88 Aligned_cols=45 Identities=13% Similarity=0.231 Sum_probs=27.5
Q ss_pred eEEEe-ecCCCccchhhhHHHHHHHHHHHcCCcEEEEEeCceeeecCCCChhH
Q psy5948 49 KIYWG-TATTGRPHIAYFVPMSKIADFLRAGCEVTILFADLHAYLDNMKAPWE 100 (549)
Q Consensus 49 ~v~~G-i~PTG~lHIGn~~~~~~l~~l~~~G~~v~ilIaD~~a~~~~~~~~~~ 100 (549)
.+|.| ||| +|+||+-.+..+ +.+.. .++|.||-...... +++|+.
T Consensus 7 ~v~iGRFQP---fH~GHl~~I~~a--l~~~d-evII~IGSA~~s~t-~~NPFT 52 (196)
T PRK13793 7 LVFIGRFQP---FHLAHMQTIEIA--LQQSR-YVILALGSAQMERN-IKNPFL 52 (196)
T ss_pred EEEEecCCC---CcHHHHHHHHHH--HHhCC-EEEEEEccCCCCCC-CCCCCC
Confidence 45555 677 899998764322 22333 78888887554443 456665
No 188
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=24.91 E-value=95 Score=33.66 Aligned_cols=39 Identities=13% Similarity=0.162 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCchhhhhc
Q psy5948 305 SDYQSLEQVFAKQELHPADLKAAAEFYINRLLEPIRKKFE 344 (549)
Q Consensus 305 ~~~eel~~~~~~g~l~~~dlK~~Lae~l~~~l~pir~~~~ 344 (549)
+++++|.+....+. ++.++|+.||..++..++.-...++
T Consensus 270 ~eI~~i~~~~~~~~-~~r~~k~~LA~e~~~~~hG~~~a~~ 308 (401)
T COG0162 270 EEIEEIEKYVLKGP-EPREAKKLLAKEVTKLVHGEEAAEA 308 (401)
T ss_pred HHHHHHHHHhhcCC-ChHHHHHHHHHHhhHhhcCHHHHHH
Confidence 57889998887776 8889999999999998888555544
No 189
>KOG0432|consensus
Probab=24.42 E-value=58 Score=38.40 Aligned_cols=36 Identities=28% Similarity=0.349 Sum_probs=26.0
Q ss_pred CCccchhhhHHHH---HHHHHHH-cCCcEEEEEeCceeee
Q psy5948 57 TGRPHIAYFVPMS---KIADFLR-AGCEVTILFADLHAYL 92 (549)
Q Consensus 57 TG~lHIGn~~~~~---~l~~l~~-~G~~v~ilIaD~~a~~ 92 (549)
||.+||||.+... .+.++.+ .|+++-..-|=.||=+
T Consensus 87 TG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~PG~DHAGI 126 (995)
T KOG0432|consen 87 TGSLHIGHALTVAIQDALARYNRMHGYQVLWVPGTDHAGI 126 (995)
T ss_pred ccccchhHHHHHHHHHHHHHHHHhcCCeeeecCCccccch
Confidence 8999999998642 2555554 5888877777777754
No 190
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=22.02 E-value=3.4e+02 Score=28.54 Aligned_cols=72 Identities=18% Similarity=0.262 Sum_probs=37.5
Q ss_pred eEEEe-ecCCCccchhhhHHHHHHHHHHHcCCcEEEEEeCce-eeecCCCChhHHHHHHHHHHHHHHHHHHHccCCCCCe
Q psy5948 49 KIYWG-TATTGRPHIAYFVPMSKIADFLRAGCEVTILFADLH-AYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISK 126 (549)
Q Consensus 49 ~v~~G-i~PTG~lHIGn~~~~~~l~~l~~~G~~v~ilIaD~~-a~~~~~~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~k 126 (549)
.+|.| |+| +|+||+..+..+ .+..-+++|.++... .... +.+++ -..|. .++...+. +++..+
T Consensus 9 ~~~~G~F~P---~H~GHl~~i~~a---~~~~d~l~v~i~s~~~~~~~--~~~~~-~~~R~----~mi~~~~~--~~~~~r 73 (340)
T PRK05379 9 LVFIGRFQP---FHNGHLAVIREA---LSRAKKVIVLIGSADLARSI--KNPFS-FEERA----QMIRAALA--GIDLAR 73 (340)
T ss_pred EEEeeccCC---CCHHHHHHHHHH---HHHCCEEEEEEccCCCCCcC--CCCCC-HHHHH----HHHHHHhh--cCCCce
Confidence 44544 666 899998775332 333357888887432 2221 22322 11222 23333333 677777
Q ss_pred eEEEEcccc
Q psy5948 127 LKFVKGTDY 135 (549)
Q Consensus 127 ~~i~~qS~~ 135 (549)
+.|+-=.|.
T Consensus 74 ~~~~pi~d~ 82 (340)
T PRK05379 74 VTIRPLRDS 82 (340)
T ss_pred EEEEECCCC
Confidence 777754444
No 191
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=21.05 E-value=3e+02 Score=24.54 Aligned_cols=74 Identities=11% Similarity=0.117 Sum_probs=42.3
Q ss_pred EEeecCCCccchhhhHHHHHHHHHHHcCCcEEEEEeCceeeecCCCChhHHHHHHHHHHHHHHHHHHHccCCCCCeeEEE
Q psy5948 51 YWGTATTGRPHIAYFVPMSKIADFLRAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFV 130 (549)
Q Consensus 51 ~~Gi~PTG~lHIGn~~~~~~l~~l~~~G~~v~ilIaD~~a~~~~~~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~ 130 (549)
..-+.-||.+..-+++ +....|.+-+++++.-..-=....+. . ....... .++..|...|++|+++.++
T Consensus 31 iIrvpC~Grv~~~~il------~Af~~GADGV~V~gC~~g~Ch~~~Gn-~---~a~~Rv~-~~k~~L~~~Gi~~eRv~~~ 99 (124)
T PF02662_consen 31 IIRVPCSGRVDPEFIL------RAFEKGADGVLVAGCHPGDCHYREGN-Y---RAEKRVE-RLKKLLEELGIEPERVRLY 99 (124)
T ss_pred EEEccCCCccCHHHHH------HHHHcCCCEEEEeCCCCCCCCcchhh-H---HHHHHHH-HHHHHHHHcCCChhHeEEE
Confidence 4555566766655533 23467999999888732211000111 1 1111222 2456788999999999998
Q ss_pred Ecccc
Q psy5948 131 KGTDY 135 (549)
Q Consensus 131 ~qS~~ 135 (549)
+-|.-
T Consensus 100 ~~~~~ 104 (124)
T PF02662_consen 100 WISAP 104 (124)
T ss_pred EeCcc
Confidence 76654
No 192
>PRK00380 panC pantoate--beta-alanine ligase; Reviewed
Probab=20.30 E-value=1.6e+02 Score=30.36 Aligned_cols=67 Identities=16% Similarity=0.164 Sum_probs=48.8
Q ss_pred ccCcEEEecccchhhHHHHHHhhhhcCCCceeEEecccccCCCCCCccCCCCCCeeeccCCHHHHHHHHHhc
Q psy5948 189 LKVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGGKMSSSEEDSKIDLLDAPALVKKKLKKA 260 (549)
Q Consensus 189 ~~~d~~~gG~DQ~~~~~~~r~l~~~~~~~~~~~l~~plL~~l~G~KMSKS~~~s~I~L~Dsp~~i~kKI~~A 260 (549)
.+.|+...|..-+|.+.+-+++.+.+++. ...+.+|.+...+|..||+.+ .+|+....+....|-++
T Consensus 139 v~Pd~a~FG~kd~qq~~~l~~~~~~l~~~-v~ii~~p~vre~dGlaiSSRN----~~Ls~~~r~~A~~l~~~ 205 (281)
T PRK00380 139 VQPDVAYFGEKDYQQLAVIRRMVADLNLP-VEIVGVPTVREADGLALSSRN----VYLSPEERKAAPALYRA 205 (281)
T ss_pred cCCCeeEECCCcchhHHHHHHHHHHcCCc-eEEEecCceECCCCCEeecCc----ccCCHHHHHHHHHHHHH
Confidence 46688778888899999989999888863 333456888888999999883 46776665555555543
Done!