Query psy5948
Match_columns 549
No_of_seqs 335 out of 2711
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 22:32:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5948.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5948hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n3l_A Tyrosyl-tRNA synthetase 100.0 2.7E-71 9.2E-76 583.0 30.9 340 16-358 4-343 (372)
2 3vgj_A Tyrosyl-tRNA synthetase 100.0 3E-68 1E-72 558.5 24.3 334 16-355 24-366 (373)
3 2dlc_X Tyrosyl-tRNA synthetase 100.0 1.2E-67 4.3E-72 559.0 28.2 345 14-358 4-357 (394)
4 2cya_A Tyrosyl-tRNA synthetase 100.0 9.4E-68 3.2E-72 554.2 24.6 335 16-355 3-358 (364)
5 2cyc_A Tyrosyl-tRNA synthetase 100.0 5.2E-67 1.8E-71 550.2 26.0 337 17-355 1-371 (375)
6 2cyb_A Tyrosyl-tRNA synthetase 100.0 5.2E-65 1.8E-69 526.9 27.4 320 17-345 1-321 (323)
7 2j5b_A Tyrosyl-tRNA synthetase 100.0 1.9E-64 6.3E-69 526.3 19.8 323 16-354 8-339 (348)
8 2zp1_A Tyrosyl-tRNA synthetase 100.0 2.4E-61 8.4E-66 496.8 26.5 305 22-345 3-308 (314)
9 3p0j_A Tyrosyl-tRNA synthetase 100.0 4.7E-60 1.6E-64 529.1 26.9 327 15-353 7-356 (690)
10 3jxe_A Tryptophanyl-tRNA synth 100.0 2.1E-58 7.3E-63 485.0 20.9 294 23-345 47-356 (392)
11 3a04_A Tryptophanyl-tRNA synth 100.0 8.9E-57 3E-61 471.7 22.6 288 23-345 44-358 (372)
12 3tze_A Tryptophanyl-tRNA synth 100.0 1.5E-56 5E-61 472.5 20.2 292 23-345 75-391 (406)
13 3tzl_A Tryptophanyl-tRNA synth 100.0 4.2E-57 1.4E-61 466.0 14.6 266 46-344 2-285 (322)
14 1h3f_A Tyrosyl-tRNA synthetase 100.0 2E-55 6.7E-60 468.6 26.9 294 14-345 3-313 (432)
15 2ip1_A Tryptophanyl-tRNA synth 100.0 1.3E-55 4.5E-60 470.0 22.0 293 23-345 76-397 (432)
16 3hzr_A Tryptophanyl-tRNA synth 100.0 6.5E-56 2.2E-60 465.3 18.9 289 23-345 56-371 (386)
17 1r6u_A Tryptophanyl-tRNA synth 100.0 3.9E-56 1.3E-60 473.3 17.1 291 23-345 82-404 (437)
18 1r6t_A Tryptophanyl-tRNA synth 100.0 1.1E-55 3.8E-60 475.9 19.6 291 23-345 129-451 (477)
19 3hv0_A Tryptophanyl-tRNA synth 100.0 1.4E-55 4.8E-60 464.2 19.4 290 23-345 48-368 (393)
20 2yxn_A Tyrosyl-tRNA synthetase 100.0 8.7E-56 3E-60 456.7 16.9 291 22-344 7-319 (322)
21 3prh_A Tryptophanyl-tRNA synth 100.0 1.6E-55 5.4E-60 461.7 13.7 274 35-344 14-322 (388)
22 3i05_A Tryptophanyl-tRNA synth 100.0 3.7E-55 1.3E-59 461.2 16.5 291 23-345 52-371 (395)
23 2g36_A Tryptophanyl-tRNA synth 100.0 9.3E-55 3.2E-59 451.6 17.9 269 46-344 11-301 (340)
24 2jan_A Tyrosyl-tRNA synthetase 100.0 2.1E-54 7.3E-59 459.3 21.0 300 23-357 7-326 (432)
25 3foc_A Tryptophanyl-tRNA synth 100.0 2.5E-54 8.5E-59 458.9 20.6 292 23-345 65-435 (451)
26 2ts1_A Tyrosyl-tRNA synthetase 100.0 3E-54 1E-58 457.4 21.1 290 23-344 5-314 (419)
27 3sz3_A Tryptophanyl-tRNA synth 100.0 2.5E-55 8.7E-60 454.7 10.3 264 47-344 6-300 (341)
28 1yi8_B Tryptophanyl-tRNA synth 100.0 2.7E-54 9.2E-59 450.0 17.7 269 45-345 20-312 (351)
29 2el7_A Tryptophanyl-tRNA synth 100.0 5.9E-54 2E-58 445.4 19.8 267 48-345 2-291 (337)
30 1i6k_A TRPRS, tryptophanyl-tRN 100.0 7E-54 2.4E-58 443.3 17.3 261 48-344 2-288 (328)
31 2pid_A Tyrosyl-tRNA synthetase 100.0 5.5E-54 1.9E-58 448.1 14.8 292 21-344 11-338 (356)
32 3n9i_A Tryptophanyl-tRNA synth 100.0 3.2E-54 1.1E-58 446.5 12.8 264 46-344 14-305 (346)
33 1jil_A Tyrrs, tyrosyl-tRNA syn 100.0 1.5E-52 5.1E-57 445.8 23.7 297 22-357 6-325 (420)
34 2yy5_A Tryptophanyl-tRNA synth 100.0 3.1E-53 1.1E-57 441.4 14.2 267 47-345 4-308 (348)
35 1y42_X Tyrosyl-tRNA synthetase 100.0 3E-52 1E-56 439.5 20.9 291 23-344 38-377 (392)
36 3p0j_A Tyrosyl-tRNA synthetase 100.0 5.9E-49 2E-53 439.6 21.9 286 46-349 381-674 (690)
37 1ntg_A Tyrrs, tyrosyl-tRNA syn 100.0 4.1E-43 1.4E-47 327.9 17.2 152 366-518 3-154 (172)
38 1fl0_A Endothelial-monocyte ac 100.0 9.7E-41 3.3E-45 311.2 13.5 146 368-518 1-146 (171)
39 3ers_X TRNA-binding protein YG 100.0 1.6E-30 5.4E-35 228.6 8.6 108 368-478 7-114 (118)
40 3g48_A Chaperone CSAA; structu 100.0 8.9E-30 3.1E-34 222.0 6.2 105 366-473 6-111 (112)
41 2cwp_A Metrs related protein; 100.0 3.9E-29 1.3E-33 218.3 10.1 103 367-473 9-111 (112)
42 1gd7_A CSAA protein; oligonucl 100.0 1.7E-29 6E-34 219.4 7.9 103 368-473 5-108 (109)
43 2nzh_A Protein CSAA; beta barr 100.0 4.2E-29 1.4E-33 218.4 6.3 104 367-473 7-112 (113)
44 2q2i_A AGR_C_4014P, secretion 99.9 8.2E-29 2.8E-33 217.5 7.1 104 367-473 10-115 (116)
45 1pyb_A Methionyl-tRNA syntheta 99.9 1.7E-28 5.7E-33 214.1 7.3 102 367-473 9-110 (111)
46 1mkh_A Metrs;, C-terminal doma 99.9 2.3E-28 7.7E-33 211.9 8.1 102 367-473 5-106 (107)
47 2q2h_A AGR_C_4014P, secretion 99.9 3.2E-28 1.1E-32 217.5 7.7 104 367-473 25-130 (131)
48 1pxf_A Hypothetical protein YG 99.9 2.3E-28 7.9E-33 213.0 6.4 105 367-474 6-110 (111)
49 3bu2_A Putative tRNA-binding p 99.9 3.4E-24 1.2E-28 203.7 9.2 95 372-473 90-196 (199)
50 2e8g_A Hypothetical protein PH 99.9 1.3E-23 4.3E-28 204.3 8.9 111 367-499 130-240 (241)
51 3pco_B Phenylalanyl-tRNA synth 99.8 5.4E-21 1.9E-25 217.6 7.5 136 371-516 41-187 (795)
52 1rqg_A Methionyl-tRNA syntheta 99.8 1.8E-21 6.2E-26 220.7 0.0 102 367-473 620-721 (722)
53 1b7y_B Phers, protein (phenyla 99.8 2.8E-20 9.5E-25 211.5 -0.6 137 371-517 41-185 (785)
54 2rhq_B Phenylalanyl-tRNA synth 99.7 1.6E-18 5.4E-23 197.9 7.3 132 371-516 41-189 (795)
55 1nzj_A Hypothetical protein YA 99.1 1E-10 3.4E-15 119.0 9.0 184 52-249 10-243 (298)
56 2cfo_A Glutamyl-tRNA synthetas 99.1 4E-10 1.4E-14 121.9 11.1 192 52-259 6-276 (492)
57 2ja2_A Glutamyl-tRNA synthetas 99.0 5E-10 1.7E-14 121.1 7.8 193 53-259 12-286 (498)
58 3afh_A Glutamyl-tRNA synthetas 99.0 7.9E-11 2.7E-15 127.3 1.4 199 47-259 25-284 (488)
59 1j09_A Glutamyl-tRNA synthetas 99.0 4.4E-10 1.5E-14 120.9 6.2 192 54-259 8-272 (468)
60 4g6z_A Glutamate-tRNA ligase; 98.9 1.6E-08 5.5E-13 108.9 15.0 199 47-259 25-293 (490)
61 3al0_C Glutamyl-tRNA(Gln) amid 98.8 2.6E-10 8.9E-15 125.9 -1.0 198 48-259 130-388 (592)
62 4gri_A Glutamate--tRNA ligase; 98.8 2.4E-08 8E-13 108.9 13.8 66 176-241 215-280 (512)
63 2o5r_A Glutamyl-tRNA synthetas 98.7 1.9E-08 6.6E-13 108.6 7.5 82 176-259 204-291 (481)
64 3aii_A Glutamyl-tRNA synthetas 98.6 1.3E-07 4.5E-12 102.8 11.3 210 15-241 58-336 (553)
65 1irx_A Lysyl-tRNA synthetase; 98.4 4.2E-07 1.4E-11 99.4 9.8 69 189-258 229-307 (523)
66 1qtq_A GLNRS, protein (glutami 98.1 1.4E-05 4.9E-10 86.9 13.0 179 47-241 26-274 (553)
67 2hz7_A Glutaminyl-tRNA synthet 98.0 3E-05 1E-09 88.1 12.3 177 48-240 67-313 (851)
68 2csx_A Methionyl-tRNA syntheta 97.8 0.00012 4.1E-09 79.3 13.6 69 189-259 249-324 (497)
69 2d5b_A Methionyl-tRNA syntheta 97.8 9.8E-05 3.3E-09 80.0 12.3 70 189-259 250-326 (500)
70 4dlp_A Aminoacyl-tRNA syntheta 97.7 0.00026 8.8E-09 77.5 13.2 55 190-248 276-334 (536)
71 1iq0_A Arginyl-tRNA synthetase 97.5 9.1E-05 3.1E-09 82.1 7.0 57 190-248 345-407 (592)
72 3tqo_A Cysteinyl-tRNA syntheta 97.5 0.00016 5.5E-09 77.5 8.0 70 50-125 29-111 (462)
73 3c8z_A Cysteinyl-tRNA syntheta 97.5 0.00091 3.1E-08 70.8 13.4 83 49-134 42-133 (414)
74 3kfl_A Methionyl-tRNA syntheta 97.4 0.0011 3.7E-08 73.0 13.6 67 189-259 293-368 (564)
75 3sp1_A Cysteinyl-tRNA syntheta 97.4 0.00024 8.3E-09 76.6 7.4 76 50-126 46-139 (501)
76 3fnr_A Arginyl-tRNA synthetase 97.4 0.00027 9.3E-09 75.9 7.7 59 189-248 233-298 (464)
77 1li5_A Cysrs, cysteinyl-tRNA s 97.4 0.00026 9E-09 76.0 7.6 67 190-259 220-295 (461)
78 3h99_A Methionyl-tRNA syntheta 97.3 0.0019 6.5E-08 71.0 13.9 65 193-259 303-374 (560)
79 2zue_A Arginyl-tRNA synthetase 97.1 0.00082 2.8E-08 74.9 7.9 55 192-248 379-439 (629)
80 1f7u_A Arginyl-tRNA synthetase 96.3 0.0077 2.6E-07 66.7 8.6 55 190-248 363-420 (607)
81 2x1l_A Methionyl-tRNA syntheta 93.4 0.023 7.7E-07 61.8 1.6 69 189-259 264-339 (524)
82 1ile_A Ilers, isoleucyl-tRNA s 92.4 0.055 1.9E-06 62.1 2.9 69 190-259 544-620 (821)
83 1ffy_A Isoleucyl-tRNA syntheta 92.2 0.079 2.7E-06 61.5 4.1 69 189-259 547-624 (917)
84 3u1f_A Methionyl-tRNA syntheta 92.2 0.039 1.3E-06 60.1 1.4 79 46-125 9-96 (542)
85 1gax_A Valrs, valyl-tRNA synth 92.2 0.066 2.3E-06 61.7 3.3 69 189-259 480-557 (862)
86 1wz2_A Leucyl-tRNA synthetase; 91.2 0.098 3.3E-06 61.1 3.4 68 189-258 602-678 (967)
87 1wkb_A Leucyl-tRNA synthetase; 91.2 0.11 3.7E-06 59.5 3.7 68 189-258 602-678 (810)
88 1rqg_A Methionyl-tRNA syntheta 89.9 0.57 1.9E-05 52.9 8.0 85 47-134 3-97 (722)
89 3u1f_A Methionyl-tRNA syntheta 87.0 1.2 3.9E-05 48.3 7.8 66 190-259 278-352 (542)
90 4arc_A Leucine--tRNA ligase; l 84.8 0.82 2.8E-05 52.6 5.5 71 189-260 542-669 (880)
91 2v0c_A Aminoacyl-tRNA syntheta 83.9 0.33 1.1E-05 56.0 1.7 41 189-229 530-579 (878)
92 2x1l_A Methionyl-tRNA syntheta 80.4 2.9 0.0001 44.9 7.5 77 55-134 22-106 (524)
93 1gax_A Valrs, valyl-tRNA synth 75.0 4.9 0.00017 46.2 7.6 46 46-91 34-85 (862)
94 4arc_A Leucine--tRNA ligase; l 66.3 3 0.0001 47.9 3.3 79 46-125 53-140 (880)
95 1ile_A Ilers, isoleucyl-tRNA s 57.0 3.5 0.00012 47.0 1.7 46 46-91 38-89 (821)
96 2v0c_A Aminoacyl-tRNA syntheta 55.0 5.5 0.00019 45.8 2.8 79 46-125 33-120 (878)
97 1ffy_A Isoleucyl-tRNA syntheta 50.5 7.9 0.00027 44.8 3.2 46 46-91 48-99 (917)
98 1wkb_A Leucyl-tRNA synthetase; 49.0 6.7 0.00023 44.6 2.3 44 47-90 35-84 (810)
99 1v8f_A Pantoate-beta-alanine l 37.3 81 0.0028 31.0 7.6 56 190-250 136-191 (276)
100 1wz2_A Leucyl-tRNA synthetase; 33.7 13 0.00044 43.2 1.4 46 46-91 34-85 (967)
101 3ag6_A Pantothenate synthetase 32.1 1.5E+02 0.005 29.2 8.5 56 194-254 145-200 (283)
102 2ejc_A Pantoate--beta-alanine 31.8 1.3E+02 0.0043 29.6 8.0 60 190-254 140-199 (280)
103 3uk2_A Pantothenate synthetase 27.1 1.9E+02 0.0064 28.5 8.3 57 189-250 140-196 (283)
104 1jhd_A Sulfate adenylyltransfe 26.6 1.8E+02 0.0062 30.0 8.5 56 33-90 177-234 (396)
105 3kf6_A Protein STN1; OB fold, 22.3 98 0.0033 27.7 4.8 32 376-410 52-83 (159)
106 2qjt_B Nicotinamide-nucleotide 21.1 1.6E+02 0.0055 29.0 6.8 34 49-88 10-44 (352)
No 1
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=100.00 E-value=2.7e-71 Score=582.98 Aligned_cols=340 Identities=76% Similarity=1.189 Sum_probs=308.6
Q ss_pred CCCHHHHHHHHHcccccccCHHHHHHHHhcCCceEEEeecCCCccchhhhHHHHHHHHHHHcCCcEEEEEeCceeeecCC
Q psy5948 16 SLSFDEKKQLITRNLQEFLGEDRLNVILKERDLKIYWGTATTGRPHIAYFVPMSKIADFLRAGCEVTILFADLHAYLDNM 95 (549)
Q Consensus 16 ~~~~~~~~~li~R~~~ei~~~~~L~~~l~~~~~~v~~Gi~PTG~lHIGn~~~~~~l~~l~~~G~~v~ilIaD~~a~~~~~ 95 (549)
.|+++++++|++||+.|++++++|+++|+.++++||+||+|||.||||||++++.+++++++|++++++|||+||+++++
T Consensus 4 ~~~~~~~~~l~~Rg~~e~~~~~~L~~~L~~~~~~vy~G~~PTG~lHlG~~~~~l~~~~~~q~g~~~i~~I~D~ha~t~~~ 83 (372)
T 1n3l_A 4 APSPEEKLHLITRNLQEVLGEEKLKEILKERELKIYWGTATTGKPHVAYFVPMSKIADFLKAGCEVTILFADLHAYLDNM 83 (372)
T ss_dssp CCCHHHHHHHHHTTCSEEECHHHHHHHHTTSCCEEEEEECCSSCCBGGGHHHHHHHHHHHHTTCEEEEEECHHHHHHTTT
T ss_pred cCCHHHHHHHHHcCCeeecCHHHHHHHHhcCCCEEEeCcCCCCcccHHHHHHHHHHHHHHHCCCCEEEEEcCCceeeCCC
Confidence 47899999999999999999999999998888899999999999999999999999999999999999999999999988
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHccCCCCCeeEEEEccccccccccHHHHHHHHcccCHHHHHHhhHHHhhhccCCCccc
Q psy5948 96 KAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLSKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSG 175 (549)
Q Consensus 96 ~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~k~~~~~~~~~~~~~~~~~ 175 (549)
.++++..+++.+++++++.+.|+|+|+||+++.||+||+|+.+.+++.+++++++.+|+.++++......+..++.++++
T Consensus 84 ~~~~~l~~~~~~~~~~~i~~~lla~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~~~~~~~v~~~~~~~~~g~ 163 (372)
T 1n3l_A 84 KAPWELLELRVSYYENVIKAMLESIGVPLEKLKFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAGAEVVKQVEHPLLSG 163 (372)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHTCCCTTEEEEEGGGTTTSHHHHHHHHHHHTTSCHHHHHHHTTTTSCCCSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHcCCChhhcEEEECCeecccHHHHHHHHHHHhhCcHHHHHhchhhhhcccCCCccee
Confidence 88888888888888876667789999999999999999997677888888889999999998764221223335678999
Q ss_pred chhhHHhhcccccccCcEEEecccchhhHHHHHHhhhhcCCCceeEEecccccCCCCCCccCCCCCCeeeccCCHHHHHH
Q psy5948 176 LLYPGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGGKMSSSEEDSKIDLLDAPALVKK 255 (549)
Q Consensus 176 ~~YP~LqAaDil~~~~d~~~gG~DQ~~~~~~~r~l~~~~~~~~~~~l~~plL~~l~G~KMSKS~~~s~I~L~Dsp~~i~k 255 (549)
|+||+|||+|++++++++||||.||++|++++|++++++++.+|+.+++|+|++++|+|||||.++++|||+|+|+++++
T Consensus 164 ~~YP~lQaaDil~~~a~~v~~G~DQ~~~~~l~rdl~~r~~~~~p~~l~~pll~gldG~KMSKS~~ns~I~L~d~p~~i~k 243 (372)
T 1n3l_A 164 LLYPGLQALDEEYLKVDAQFGGIDQRKIFTFAEKYLPALGYSKRVHLMNPMVPGLTGSKMSSSEEESKIDLLDRKEDVKK 243 (372)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECCCCCSSCC-------CCSCBTTCCHHHHHH
T ss_pred eecchHhhccHHHhcCCEEEcChhHHHHHHHHHHHHHHcCCCCCEEEecCccCCCCcccccCCCCCCeEeccCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999878999999999999
Q ss_pred HHHhccCCCCCCCcchhhchhhhheecccCCCcceeeeecccCCCCCCCCCHHHHHHHHHcCCCChHHHHHHHHHHHHHh
Q psy5948 256 KLKKAFCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPADLKAAAEFYINRL 335 (549)
Q Consensus 256 KI~~A~td~~~~~~~~v~~~~k~~lf~~~~~~~~~~i~~~~~~g~~~~~~~~eel~~~~~~g~l~~~dlK~~Lae~l~~~ 335 (549)
|||+|+|||+++++|+|.+|++++||++++. |+++|++++||+.+++++++|+++|.+|+++|++||++||++|+++
T Consensus 244 Ki~~A~td~~~~~d~~v~~~lk~~l~~~~~~---f~~er~~~~g~~~~~~~i~el~~~~~~g~~~~~~~K~~La~~i~~~ 320 (372)
T 1n3l_A 244 KLKKAFCEPGNVENNGVLSFIKHVLFPLKSE---FVILRDEKWGGNKTYTAYVDLEKDFAAEVVHPGDLKNSVEVALNKL 320 (372)
T ss_dssp HHHTCCCCTTCCSSCHHHHHHHHTTGGGTTC---EEECCCGGGTCCEEESSHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCCCCCcccHHHHHHHhhhhhhcc---eeecccccccCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999997 9999999999999999999999999999999999999999999999
Q ss_pred cCchhhhhcchHHHHHhhhcCCC
Q psy5948 336 LEPIRKKFESKELKDLTSKAYPP 358 (549)
Q Consensus 336 l~pir~~~~~~e~~~~~~~~~~~ 358 (549)
++|+|++++.++++++...+||.
T Consensus 321 l~p~r~~~~~~~~~~lf~~~~p~ 343 (372)
T 1n3l_A 321 LDPIREKFNTPALKKLASAAYPD 343 (372)
T ss_dssp HHHHHHHTTSHHHHHHHHHHCC-
T ss_pred HhHHHHHhcCHHHHHHHhccCCC
Confidence 99999999977888999999995
No 2
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=100.00 E-value=3e-68 Score=558.47 Aligned_cols=334 Identities=29% Similarity=0.415 Sum_probs=289.6
Q ss_pred CCCHHHHHHHHHcccccccCHHHHHHHHhc-CCceEEEeecCCCccchhhhHH-HHHHHHHHHcCCcEEEEEeCceeeec
Q psy5948 16 SLSFDEKKQLITRNLQEFLGEDRLNVILKE-RDLKIYWGTATTGRPHIAYFVP-MSKIADFLRAGCEVTILFADLHAYLD 93 (549)
Q Consensus 16 ~~~~~~~~~li~R~~~ei~~~~~L~~~l~~-~~~~v~~Gi~PTG~lHIGn~~~-~~~l~~l~~~G~~v~ilIaD~~a~~~ 93 (549)
.|+++|++++|+|++.|++++++|+++|++ +++++|+||+|||.+||||.+. .+.+++||++||+++++|||+||+++
T Consensus 24 ~~~~~e~~~li~r~~~e~~~~~~L~~~L~~~~~~~iy~G~~PTg~lHlG~gvl~~~~~~~lQ~~G~~~~~lIaD~ha~i~ 103 (373)
T 3vgj_A 24 IEDVDKILNDILSISSECIQPDELRVKLLLKRKLICYDGFEPSGRMHIAQGLLKSIIVNKLTSNGCTFIFWIADWFAHLN 103 (373)
T ss_dssp HHHHHHHHHHHHHHCSEEECHHHHHHHHHHCSSCEEEEEECCCSSCBHHHHHHHHHHHHHHHTTTCEEEEEECHHHHHHT
T ss_pred CCCHHHHHHHHHcCcceecCHHHHHHHHhcCCCceEEeCCCCCCCceehhhHHHHHHHHHHHHCCCcEEEEEecceeEec
Confidence 467899999999999999999999999986 5889999999999999999653 34588899999999999999999998
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHccCCCCCeeEEEEccccc-ccc-ccHHHHHHHHcccCHHHHHHhhHHHhhhc-cC
Q psy5948 94 NMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQ-LSK-EYTLDVYRLSSVITEHDAKKAGAEVVKQV-EH 170 (549)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS~~~-~~~-~~~~~~~~l~~~~t~~~~k~~~~~~~~~~-~~ 170 (549)
++.+ .+..+.+.+... +.+.|+|+|+||++++||+||+|+ .+. .+|..+..++++++..++.+......+.. ++
T Consensus 104 d~~~-~~~~~i~~~~~~--~~~~~~a~G~dp~k~~i~~~S~~~~~~~~l~~~~~~~i~~~~tv~rm~~~~~~~~r~~~~~ 180 (373)
T 3vgj_A 104 NKMS-GDLKKIKKVGSY--FIEVWKSCGMNMENVQFLWASEEINKKPNEYWSLVLDISRSFNINRMKRCLKIMGRSEGEE 180 (373)
T ss_dssp TGGG-GCHHHHHHHHHH--HHHHHHHTTCCSTTEEEEEHHHHHHHSHHHHHHHHHHHHTTSBHHHHHTTGGGGTCCTTSC
T ss_pred CCCC-CCHHHHHHHHHH--HHHHHHHcCCChhheEEEeChhHHhhhhHHHHHHHHHHHccCcHHHHHhhhHHHhhhccCC
Confidence 7432 223334433222 236789999999999999999996 555 45556667899999988876432212211 45
Q ss_pred CCcccchhhHHhhcccccccCcEEEecccchhhHHHHHHhhhhcCCC-ceeEEecccccCC-CC-CCccCCCCCCeeecc
Q psy5948 171 PLLSGLLYPGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYA-KRIHFMNPMVPGL-AG-GKMSSSEEDSKIDLL 247 (549)
Q Consensus 171 ~~~~~~~YP~LqAaDil~~~~d~~~gG~DQ~~~~~~~r~l~~~~~~~-~~~~l~~plL~~l-~G-~KMSKS~~~s~I~L~ 247 (549)
.++++|+||+|||||++++++|+||||.|||+|++++|++++++|+. +|+.+++|+|+|| +| +|||||.++|+|||+
T Consensus 181 ~~~g~f~YPlLQaaDil~l~ad~vpgG~DQ~~~l~l~Rdla~r~~~~~~~~~l~~p~l~gL~dG~~KMSKS~~~~~I~L~ 260 (373)
T 3vgj_A 181 NYCSQILYPCMQCADIFFLNVDICQLGIDQRKVNMLAREYCDIKKIKKKPVILSHGMLPGLLEGQEKMSKSDENSAIFMD 260 (373)
T ss_dssp CBTHHHHHHHHHHHHHHHTTCSEECCBGGGHHHHHHHHHHHHHHTCSCCCEEEEBCCCCCSSTTCCSCCSSSTTCCCBTT
T ss_pred CChHHHHHHHHHHhcccccCCcEEEcchhhHHHHHHHHHHHHHhCCCCCceEEeCCeeecCCCCCCCCcCCCCCCeeecC
Confidence 78999999999999999999999999999999999999999999986 5788999999998 88 599999987899999
Q ss_pred CCHHHHHHHHHhccCCCCCCCcchhhchhhhheecccCCCcceeeeecccCCCCCCCCCHHHHHHHHHcCCCChHHHHHH
Q psy5948 248 DAPALVKKKLKKAFCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPADLKAA 327 (549)
Q Consensus 248 Dsp~~i~kKI~~A~td~~~~~~~~v~~~~k~~lf~~~~~~~~~~i~~~~~~g~~~~~~~~eel~~~~~~g~l~~~dlK~~ 327 (549)
|+|++|++|||+|+|||+++++|++.+|+++++|+++.. |.++|++++|++.+++++++|+++|.+|++||++||++
T Consensus 261 D~p~~i~~KI~kA~td~~~~~~n~~~~~~~~~~f~~~~~---f~~~~~~~~g~~~~~~~~eel~~~~~~g~l~~~dlK~~ 337 (373)
T 3vgj_A 261 DSESDVNRKIKKAYCPPNVIENNPIYAYAKSIIFPSYNE---FNLVRKEKNGGDKTYYTLQELEHDYVNGFIHPLDLKDN 337 (373)
T ss_dssp CCHHHHHHHHHHSCCCTTCCTTCHHHHHHHHTHHHHHSS---EEECCCGGGTCCEEECCHHHHHHHHHTTSSCHHHHHHH
T ss_pred CCHHHHHHHHHhCcCCCCCCCCCcchhhhhhhhhhhhhh---hcccccccccCCcCcccHHHHHHHHHcCCCCHHHHHHH
Confidence 999999999999999999999999999999999999987 99999999999989999999999999999999999999
Q ss_pred HHHHHHHhcCchhhhhc-chHHHHHhhhc
Q psy5948 328 AEFYINRLLEPIRKKFE-SKELKDLTSKA 355 (549)
Q Consensus 328 Lae~l~~~l~pir~~~~-~~e~~~~~~~~ 355 (549)
||++|+++|+|||++|+ .+++++++...
T Consensus 338 lae~i~~~l~Pire~~~~~~~~~~~l~~v 366 (373)
T 3vgj_A 338 VAMYINKLLQPVRDHFQNNIEAKNLLNEI 366 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 99999999999999999 47788766553
No 3
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-67 Score=559.02 Aligned_cols=345 Identities=57% Similarity=0.977 Sum_probs=298.3
Q ss_pred CCCCCHHHHHHHHHcccccccCHHHHHHHHhc--CCceEEEeecCCCccchhhhHHHHHHHHHHHcCCcEEEEEeCceee
Q psy5948 14 SPSLSFDEKKQLITRNLQEFLGEDRLNVILKE--RDLKIYWGTATTGRPHIAYFVPMSKIADFLRAGCEVTILFADLHAY 91 (549)
Q Consensus 14 ~~~~~~~~~~~li~R~~~ei~~~~~L~~~l~~--~~~~v~~Gi~PTG~lHIGn~~~~~~l~~l~~~G~~v~ilIaD~~a~ 91 (549)
+-.|++++|++|++|++.|++++++|+++|+. +++++|+||+|||.||||||++++.+..++++|++++++|||+||+
T Consensus 4 ~~~~~~~~~~~l~~rg~~e~~~~e~L~~~L~~~~~p~~vy~G~~PTG~LHlG~~~~al~~~~~~q~g~~~ii~I~D~ha~ 83 (394)
T 2dlc_X 4 AATVDPNEAFGLITKNLQEVLNPQIIKDVLEVQKRHLKLYWGTAPTGRPHCGYFVPMTKLADFLKAGCEVTVLLADLHAF 83 (394)
T ss_dssp ----CHHHHHHHHHTTCSEEECHHHHHHHHHTSCSCCEEEEEECCCSCCBGGGHHHHHHHHHHHHTTCEEEEEECHHHHH
T ss_pred cccCCHHHHHHHHHcCcceecCHHHHHHHHHccCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHcCCcEEEEEcCCccc
Confidence 34578999999999999999999999999975 6779999999999999999999998888999999999999999999
Q ss_pred ecCCCChhHHHHHHHHHHHHHHHHHHHccCCCCCeeEEEEccccccccccHHHHHHHHcccCHHHHHHhhHHHhhhccCC
Q psy5948 92 LDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLSKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHP 171 (549)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~k~~~~~~~~~~~~~ 171 (549)
++++.++.+..+....++...+.++|+|+|+||+++.||+||+|..+.+++..++.++..++..++++...+..+..++.
T Consensus 84 t~~~~~~~e~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~l~r~~~~~~r~~~~~ 163 (394)
T 2dlc_X 84 LDNMKAPLEVVNYRAKYYELTIKAILRSINVPIEKLKFVVGSSYQLTPDYTMDIFRLSNIVSQNDAKRAGADVVKQVANP 163 (394)
T ss_dssp HTTTSSCTTHHHHHHHHHHHHHHHHHHHTTCCCTTCEEEETHHHHTSHHHHHHHHHHHTTSCHHHHHHHTTTTSCCCSSC
T ss_pred cCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCChhHcEEEeCchhcchHHHHHHHHHHhCcCcHHHHhcccHhhhcccCCc
Confidence 99877777766666666666667788999999999999999999656677777888888899988876432222333466
Q ss_pred CcccchhhHHhhcccccccCcEEEecccchhhHHHHHHhhhhcCCCceeEEecccccCCC-CCCccCCCCCCeeeccCCH
Q psy5948 172 LLSGLLYPGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLA-GGKMSSSEEDSKIDLLDAP 250 (549)
Q Consensus 172 ~~~~~~YP~LqAaDil~~~~d~~~gG~DQ~~~~~~~r~l~~~~~~~~~~~l~~plL~~l~-G~KMSKS~~~s~I~L~Dsp 250 (549)
++++|+||+|||+|++++++++|+||.||++|++++|++++++|+.+|+.+++|+|++++ |+|||||.++++|||+|+|
T Consensus 164 ~~g~~~YP~lQaaD~l~~~~~~v~~G~DQ~~~~~l~rdl~~r~~~~~p~~l~~pll~gl~~G~KMSKS~~ns~I~L~D~p 243 (394)
T 2dlc_X 164 LLSGLIYPLMQALDEQFLDVDCQFGGVDQRKIFVLAEENLPSLGYKKRAHLMNPMVPGLAQGGKMSASDPNSKIDLLEEP 243 (394)
T ss_dssp CTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECCCCCCC----------CCSCBTTCCH
T ss_pred cceeeechhHhhccHhhhCCCEEecCccHHHHHHHHHHHHHHcCCCCCEEEecccccCCCCCCcCCCCCCCCEEeccCCH
Confidence 899999999999999999999999999999999999999999999999999999999999 8999999998779999999
Q ss_pred HHHHHHHHhccCCCCCCCcchhhchhhhheecccCC-----CcceeeeecccCCCCCCCCCHHHHHHHHHcCCCChHHHH
Q psy5948 251 ALVKKKLKKAFCEPGNVEDNGVLSFLKHVVFSLLKP-----GENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPADLK 325 (549)
Q Consensus 251 ~~i~kKI~~A~td~~~~~~~~v~~~~k~~lf~~~~~-----~~~~~i~~~~~~g~~~~~~~~eel~~~~~~g~l~~~dlK 325 (549)
++|++|||+|+|||+++++|++..|+++++||+... ...|.+.|++++++..+++++++|+++|.+|+++|++||
T Consensus 244 ~~i~kKI~ka~Td~~~~~d~~v~~y~k~~~~p~~~~~~~~g~~~~~i~~~~~~~~~~~~~~i~el~~~~~~g~~~~~~~K 323 (394)
T 2dlc_X 244 KQVKKKINSAFCSPGNVEENGLLSFVQYVIAPIQELKFGTNHFEFFIDRPEKFGGPITYKSFEEMKLAFKEEKLSPPDLK 323 (394)
T ss_dssp HHHHHHHHHSCCCTTCCSSCHHHHHHHHTHHHHHHTSSSTTCCCEEECCCGGGSCCEEESSHHHHHHHHHTTSSCHHHHH
T ss_pred HHHHHHHHHhcCCCCCCCcchHHHHHHhhhcchhhhcccCCCceEEEeccccccCcCCHHHHHHHHHHHhcCCCCHHHHH
Confidence 999999999999999999999999999999998731 112888999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCchhhhhc-chHHHHHhhhcCCC
Q psy5948 326 AAAEFYINRLLEPIRKKFE-SKELKDLTSKAYPP 358 (549)
Q Consensus 326 ~~Lae~l~~~l~pir~~~~-~~e~~~~~~~~~~~ 358 (549)
++||++|+++++|+|++++ +++++++...+||.
T Consensus 324 ~~La~~i~~~l~p~r~~~~~~~~~~~~~~~~~p~ 357 (394)
T 2dlc_X 324 IGVADAINELLEPIRQEFANNKEFQEASEKGYPV 357 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHhHHHHHHHCCHHHHHHHhccCCC
Confidence 9999999999999999997 67899998888885
No 4
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=100.00 E-value=9.4e-68 Score=554.20 Aligned_cols=335 Identities=27% Similarity=0.444 Sum_probs=285.7
Q ss_pred CCCHHHHHHHHHcccccccCHHHHHHHHhc-CCceEEEeecCCCccchhhhHHHHHHHHHHHcCCcEEEEEeCceeeecC
Q psy5948 16 SLSFDEKKQLITRNLQEFLGEDRLNVILKE-RDLKIYWGTATTGRPHIAYFVPMSKIADFLRAGCEVTILFADLHAYLDN 94 (549)
Q Consensus 16 ~~~~~~~~~li~R~~~ei~~~~~L~~~l~~-~~~~v~~Gi~PTG~lHIGn~~~~~~l~~l~~~G~~v~ilIaD~~a~~~~ 94 (549)
.|+.++|++|++|++.|++++++|+++|++ +++++|+||+|||.+||||+++++.+++||++|++++++|||+||++++
T Consensus 3 ~~~~~~~~~l~~r~~~e~~~~~~L~~~l~~~~~~~iy~G~~PTg~lHlG~l~~l~~~~~lQ~~G~~~~~~iaD~~a~~~~ 82 (364)
T 2cya_A 3 RVDVEERFNRIARNTVEIVTEEELKGLLASGARIKGYIGYEPSGVAHIGWLVWMYKVKDLVEAGVDFSVLEATWHAYIND 82 (364)
T ss_dssp -CHHHHHHHHHHTTCSEEETHHHHHHHHHHCSCCEEEEEECCCSSCBTHHHHHHHHHHHHHHTTCEEEEEECHHHHHHTT
T ss_pred CCCHHHHHHHHHcCchhcCCHHHHHHHHhcCCCCEEEeccCCCCCccHhHHHHHHHHHHHHHCCCCEEEEEeCcchhhCC
Confidence 478899999999999999999999999985 7889999999999999999888889999999999999999999999997
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHccCCCCCeeEEEEccccccccccHHHHHHHHcccCHHHHHHhhHHH--hhhccCCC
Q psy5948 95 MKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLSKEYTLDVYRLSSVITEHDAKKAGAEV--VKQVEHPL 172 (549)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~k~~~~~~--~~~~~~~~ 172 (549)
+++. +....+.+... +.+.|+|+|+||++++||+||+|+.+..+|..+..++++++..++++..... .....+.+
T Consensus 83 ps~~-~~e~i~~~~~~--~~~~~la~G~dp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~l~r~~~~k~r~~~~~~i~ 159 (364)
T 2cya_A 83 KLGG-DMDLIRAAARI--VRRVMEAAGVPVERVRFVDAEELASDKDYWGLVIRVAKRASLARVRRALTIMGRRAEEAEVD 159 (364)
T ss_dssp GGGG-CHHHHHHHHHH--HHHHHHHTTCCGGGCEEEEHHHHHTCHHHHHHHHHHHHTSCHHHHHTTC------CCGGGSC
T ss_pred CCCC-CHHHHHHHHHH--HHHHHHHhCCCccceEEEecchhhcchHHHHHHHHHHCcCcHHHHHcCchhhhhhcCCCCcc
Confidence 5322 33444444433 3468899999999999999999987766788888899999998887643211 11223467
Q ss_pred cccchhhHHhhcccccccCcEEEecccchhhHHHHHHhhhhcCCCceeEEecccccCCC-----------------CCCc
Q psy5948 173 LSGLLYPGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLA-----------------GGKM 235 (549)
Q Consensus 173 ~~~~~YP~LqAaDil~~~~d~~~gG~DQ~~~~~~~r~l~~~~~~~~~~~l~~plL~~l~-----------------G~KM 235 (549)
+++|+||+||||||++++++++|||.|||+|++++|++++++|+.+|+.+++|+|++|+ |+||
T Consensus 160 ~g~~~YP~LQaaDil~~~~~~v~~G~DQ~~~~~l~rdla~r~~~~~p~~l~~~ll~~l~g~~~~~~~~~~~~~~~~g~KM 239 (364)
T 2cya_A 160 ASKLIYPLMQVSDIFYMDLDIALGGMDQRKAHMLARDVAEKLGRKKPVAIHTPIISSLQGPGRMEASQGEIDDVLAEVKM 239 (364)
T ss_dssp THHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHHTTTTCCCCEEEEECCCBCSSCC----------------CBC
T ss_pred chhhhhHHHHHhhHHhcCCCEEeccchHHHHHHHHHHHHHHcCCCCceeeccceeeCCCccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999 6899
Q ss_pred cCCCCCCeeeccCCHHHHHHHHHhccCCCCCCCcchhhchhhhheecccCCCcceeeeecccCCCCCCCCCHHHHHHHHH
Q psy5948 236 SSSEEDSKIDLLDAPALVKKKLKKAFCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFA 315 (549)
Q Consensus 236 SKS~~~s~I~L~Dsp~~i~kKI~~A~td~~~~~~~~v~~~~k~~lf~~~~~~~~~~i~~~~~~g~~~~~~~~eel~~~~~ 315 (549)
|||+++++|||+|+|+++++||++|+|||+++++|++++|++++.|+.... +|+|.|++++||+.+++++++|+++|.
T Consensus 240 SKS~~~~~I~L~d~p~~i~~Ki~~a~td~~~~~~~~v~~~~~~~~f~~~~~--~~~i~r~~~~G~~~~~~~~~el~~~~~ 317 (364)
T 2cya_A 240 SKSKPETAVFVVDSDDDIRRKIRKAYCPAKQVQGNPVLEIARYILFARDGF--TLRVDRPAKYGGPVEYTSYEELERDYT 317 (364)
T ss_dssp CSSSGGGSCBTTCCHHHHHHHHHTSCCCTTCCTTCHHHHHHHHTTTTSTTC--CEECC--------CEESSHHHHHHHHH
T ss_pred CCCCCCCEeeccCCHHHHHHHHHhCcCCCCCCCCCcHHHHHHHHhcccccC--ceeeeccccccCCCChHHHHHHHHHHh
Confidence 999877899999999999999999999999999999999999888876543 388999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHHHhcCchhhhhc-chHHHHHhhhc
Q psy5948 316 KQELHPADLKAAAEFYINRLLEPIRKKFE-SKELKDLTSKA 355 (549)
Q Consensus 316 ~g~l~~~dlK~~Lae~l~~~l~pir~~~~-~~e~~~~~~~~ 355 (549)
+|+++|++||++||++|+++++|+|++|+ ..|++++++..
T Consensus 318 ~g~~~~~~lK~~la~~l~~~l~pir~~~~~~~~~~~~~~~~ 358 (364)
T 2cya_A 318 DGRLHPLDLKNAVAESLIEVVRPIRGAVLGDPAMKRALEAI 358 (364)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHh
Confidence 99999999999999999999999999999 46788776553
No 5
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=100.00 E-value=5.2e-67 Score=550.20 Aligned_cols=337 Identities=27% Similarity=0.441 Sum_probs=293.2
Q ss_pred CCHHHHHHHHHcc-cccccCHHHHHHHHhc-CCceEEEeecCCCccchhh-hHHHHHHHHHHHcCCcEEEEEeCceeeec
Q psy5948 17 LSFDEKKQLITRN-LQEFLGEDRLNVILKE-RDLKIYWGTATTGRPHIAY-FVPMSKIADFLRAGCEVTILFADLHAYLD 93 (549)
Q Consensus 17 ~~~~~~~~li~R~-~~ei~~~~~L~~~l~~-~~~~v~~Gi~PTG~lHIGn-~~~~~~l~~l~~~G~~v~ilIaD~~a~~~ 93 (549)
|+.++|++|++|+ +.+++++++|++++++ +++++|+||+|||.+|||| +++++.+++||++|++++++|||+||+++
T Consensus 1 ~~~~~~~~l~~r~~~~e~~~~~~l~~~l~~~~~~~vy~G~~PTg~lHlG~yl~~l~~~~~lQ~~G~~~~~~iaD~ha~~~ 80 (375)
T 2cyc_A 1 MDIEERINLVLKKPTEEVLTVENLRHLFEIGAPLQHYIGFEISGYIHLGTGLMAGAKIADFQKAGIKTRVFLADWHSWIN 80 (375)
T ss_dssp CCHHHHHHHHHSTTEEEEETHHHHHHHHHHTCCCBEEEEECCCSCCBHHHHHHHHHHHHHHHHTTCBCEEEECHHHHHHT
T ss_pred CCHHHHHHHHhcCCceeecCHHHHHHHHhcCCCcEEEeCCCCCCCcCchHHHHHHHHHHHHHHCCCcEEEEecCcEEEcC
Confidence 5789999999999 8999999999999985 6889999999999999999 55777899999999999999999999999
Q ss_pred CCC--ChhHHHHHHHHHHHHHHHHHHHccCCCCCeeEEEEccccccccccHHHHHHHHcccCHHHHHHhhHHHhhh-ccC
Q psy5948 94 NMK--APWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLSKEYTLDVYRLSSVITEHDAKKAGAEVVKQ-VEH 170 (549)
Q Consensus 94 ~~~--~~~~~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~k~~~~~~~~~-~~~ 170 (549)
+++ ++.++.++...++...+.+.|+|+|+||+++.||+||+|+.+..+|..+..++++++..++++......+. .++
T Consensus 81 ~~~g~~~e~i~~~~~~~~~~~~~~~~la~G~dp~k~~i~~qS~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~k~r~~~~~ 160 (375)
T 2cyc_A 81 DKLGGDLEVIQEVALKYFKVGMEKSIEVMGGDPKKVEFVLASEILEKGDYWQTVIDISKNVTLSRVMRSITIMGRQMGEA 160 (375)
T ss_dssp TGGGGCHHHHHHHHHHTHHHHHHHHHHHTTCCGGGSEEEETHHHHTBHHHHHHHHHHHTTSBHHHHHHTGGGGTCCCCTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEEcchhhhhhHHHHHHHHHhceeEHHHHhccchhhhhccCCC
Confidence 753 33233333313333334578999999999999999999988877777788899999999988754322221 234
Q ss_pred CCcccchhhHHhhcccccccCcEEEecccchhhHHHHHHhhhhcCC--------C-ceeEEecccccCCCC---------
Q psy5948 171 PLLSGLLYPGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGY--------A-KRIHFMNPMVPGLAG--------- 232 (549)
Q Consensus 171 ~~~~~~~YP~LqAaDil~~~~d~~~gG~DQ~~~~~~~r~l~~~~~~--------~-~~~~l~~plL~~l~G--------- 232 (549)
.++++|+||+||||||+++++++||||.|||+|++++|++++++|+ . +|+.+++|+|++|+|
T Consensus 161 i~~g~f~YP~LQaaDil~~~~~~vp~G~DQ~~~i~l~rdla~r~n~~~~~~~g~~~~~~~~~~~~l~gL~g~~~~~~~~~ 240 (375)
T 2cyc_A 161 IDFAKLIYPMMQVADIFYQGVTIAHAGMDQRKAHVIAIEVAQKLRYHPIVHEGEKLKPVAVHHHLLLGLQEPPKWPIESE 240 (375)
T ss_dssp CBTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHGGGCSSSCEEETTEEECCEEEEECCCBCSSCCSSSSCCSH
T ss_pred CChHHHHHHHHHHHHHHHhCCCeecccchHHHHHHHHHHHHHHhCCcccccccccCccEEeccccccCCCCcccccccch
Confidence 6899999999999999999999999999999999999999999997 3 778899999999998
Q ss_pred ---------CCccCCCCCCeeeccCCHHHHHHHHHhccCCCCCCCcchhhchhhhheecccCCCcceeeeecccCCCCCC
Q psy5948 233 ---------GKMSSSEEDSKIDLLDAPALVKKKLKKAFCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLN 303 (549)
Q Consensus 233 ---------~KMSKS~~~s~I~L~Dsp~~i~kKI~~A~td~~~~~~~~v~~~~k~~lf~~~~~~~~~~i~~~~~~g~~~~ 303 (549)
+|||||.++++|||+|+|+++++||++|+|||+++++|++.+|+++++|+.... .|+|.+++++||+.+
T Consensus 241 ~~~~~~~~~~KMSKS~~~~~I~L~d~p~~i~~KI~~A~t~~~~~~~~~v~~~~~~~~f~~~~~--~~~i~~~~~~gg~~~ 318 (375)
T 2cyc_A 241 EEFKEIKAQMKMSKSKPYSAVFIHDSPEEIRQKLRKAFCPAREVRYNPVLDWVEYIIFREEPT--EFTVHRPAKFGGDVT 318 (375)
T ss_dssp HHHHHHHHHHBGGGSCGGGSCBTTCCHHHHHHHHHHSCCCTTCCSSCHHHHHHHHTTTSSSSC--CEEECCCGGGTCCEE
T ss_pred hhhhhhhhhhcccCCCCCCeeccCCCHHHHHHHHHHhcCCCCCCCCChHHHHHHHHhcCCCCc--ceeeecchhccCcCC
Confidence 799999977899999999999999999999999999999999999877665432 388999999999999
Q ss_pred CCCHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCchhhhhc-chHHHHHhhhc
Q psy5948 304 FSDYQSLEQVFAKQELHPADLKAAAEFYINRLLEPIRKKFE-SKELKDLTSKA 355 (549)
Q Consensus 304 ~~~~eel~~~~~~g~l~~~dlK~~Lae~l~~~l~pir~~~~-~~e~~~~~~~~ 355 (549)
++++++|+++|.+|+++|++||++||++|+++++|+|++|+ ..+++++++..
T Consensus 319 ~~~~~el~~~~~~g~~~~~~~K~~La~~l~~~l~pir~~~~~~~~~~~~~~~~ 371 (375)
T 2cyc_A 319 YTTFEELKRDFAEGKLHPLDLKNAVAEYLINLLEPIRRYFEKHPEPLELMRSV 371 (375)
T ss_dssp ESSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTHHHHHHHHHCCHHHHHHHHC
T ss_pred hhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHhc
Confidence 99999999999999999999999999999999999999999 45788776553
No 6
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=100.00 E-value=5.2e-65 Score=526.94 Aligned_cols=320 Identities=36% Similarity=0.641 Sum_probs=283.2
Q ss_pred CCHHHHHHHHHcccccccCHHHHHHHHh-cCCceEEEeecCCCccchhhhHHHHHHHHHHHcCCcEEEEEeCceeeecCC
Q psy5948 17 LSFDEKKQLITRNLQEFLGEDRLNVILK-ERDLKIYWGTATTGRPHIAYFVPMSKIADFLRAGCEVTILFADLHAYLDNM 95 (549)
Q Consensus 17 ~~~~~~~~li~R~~~ei~~~~~L~~~l~-~~~~~v~~Gi~PTG~lHIGn~~~~~~l~~l~~~G~~v~ilIaD~~a~~~~~ 95 (549)
|+++++++|++|++.|++++++|+++|+ ++++++|+||+|||.|||||+.+++.++++|++|++++++|||+||++++
T Consensus 1 ~~~~~~~~l~~rg~~e~~~~~~l~~~l~~~~~~~vy~G~~PTg~lHlG~l~~l~~~~~lq~~g~~~~~~i~D~~a~~~d- 79 (323)
T 2cyb_A 1 MDITEKLRLITRNAEEVVTEEELRQLIETKEKPRAYVGYEPSGEIHLGHMMTVQKLMDLQEAGFEIIVLLADIHAYLNE- 79 (323)
T ss_dssp -CHHHHHHHHHTTCSEEETHHHHHHHHHSCSCCEEEEEECCCSCCBHHHHHHHHHHHHHHHTTCEEEEEECHHHHHHTT-
T ss_pred CCHHHHHHHHHcCChhhcCHHHHHHHHhCCCCCEEEECcCCCCcchHHHHHHHHHHHHHHHCCCcEEEEECCceeEcCC-
Confidence 5789999999999999999999999998 57889999999999999999989889999999999999999999999997
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHccCCCCCeeEEEEccccccccccHHHHHHHHcccCHHHHHHhhHHHhhhccCCCccc
Q psy5948 96 KAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLSKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSG 175 (549)
Q Consensus 96 ~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~k~~~~~~~~~~~~~~~~~ 175 (549)
++..+ +.+.+... +.+.|+|+|+||+++.||+||+|+.+.+++..+..+++.++..++.+......+..+..++++
T Consensus 80 ~~~~~--~i~~~~~~--~~~~~~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~l~~~~~~~~~~~~~~~~g~ 155 (323)
T 2cyb_A 80 KGTFE--EIAEVADY--NKKVFIALGLDESRAKFVLGSEYQLSRDYVLDVLKMARITTLNRARRSMDEVSRRKEDPMVSQ 155 (323)
T ss_dssp CCCHH--HHHHHHHH--HHHHHHHTTCCTTTCEEEEGGGTTTSHHHHHHHHHHHHHSBHHHHHHHTTTTCSCSSSCBTHH
T ss_pred CCCHH--HHHHHHHH--HHHHHHHhCCCccceEEEEcchhccchHHHHHHHHHhCccCHHHHhccchhhccccCCCCchh
Confidence 52322 33333322 345788999999999999999997665666666778888888887764221111123348999
Q ss_pred chhhHHhhcccccccCcEEEecccchhhHHHHHHhhhhcCCCceeEEecccccCCCCCCccCCCCCCeeeccCCHHHHHH
Q psy5948 176 LLYPGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGGKMSSSEEDSKIDLLDAPALVKK 255 (549)
Q Consensus 176 ~~YP~LqAaDil~~~~d~~~gG~DQ~~~~~~~r~l~~~~~~~~~~~l~~plL~~l~G~KMSKS~~~s~I~L~Dsp~~i~k 255 (549)
|+||+|||+|+++++++++|+|.||++|++++|++++++|+.+|+.+++|+|++++|+|||||. +|+|||+|+|+++++
T Consensus 156 ~~YP~lqaaD~l~~~~~~v~~G~DQ~~~~~l~rdla~~~~~~~p~~l~~pll~~l~G~KMSKS~-~n~I~l~d~p~~i~~ 234 (323)
T 2cyb_A 156 MIYPLMQALDIAHLGVDLAVGGIDQRKIHMLARENLPRLGYSSPVCLHTPILVGLDGQKMSSSK-GNYISVRDPPEEVER 234 (323)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECCCBCTTSSBCCTTT-TCSCBTTCCHHHHHH
T ss_pred hhhHHHHHHHHHhcCCCEEEechhhHHHHHHHHHHHHhcCCCCceEEecCcccCCCCCcccCCc-CceeCCCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999995 579999999999999
Q ss_pred HHHhccCCCCCCCcchhhchhhhheecccCCCcceeeeecccCCCCCCCCCHHHHHHHHHcCCCChHHHHHHHHHHHHHh
Q psy5948 256 KLKKAFCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPADLKAAAEFYINRL 335 (549)
Q Consensus 256 KI~~A~td~~~~~~~~v~~~~k~~lf~~~~~~~~~~i~~~~~~g~~~~~~~~eel~~~~~~g~l~~~dlK~~Lae~l~~~ 335 (549)
||++|+|||+++++|++.+|++++++|+++. |+|+|++++|++.+++++++|+++|.+|+++|++||++|+++|+++
T Consensus 235 Ki~~a~td~~~~~~~~~~~~~~~~~~p~~~~---~~i~~~~~~G~~~~~~~~~~l~~~~~~g~~~~~~~K~~la~~i~~~ 311 (323)
T 2cyb_A 235 KIRKAYCPAGVVEENPILDIAKYHILPRFGK---IVVERDAKFGGDVEYASFEELAEDFKSGQLHPLDLKIAVAKYLNML 311 (323)
T ss_dssp HHHTSCCCTTCCTTCHHHHHHHHTHHHHHSC---EEECCCGGGTCCEEESSHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCCCCcChHHHHHHHHhccccCc---eeEechhhcCCCCCcccHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999986 9999999999999999999999999999999999999999999999
Q ss_pred cCchhhhhcc
Q psy5948 336 LEPIRKKFES 345 (549)
Q Consensus 336 l~pir~~~~~ 345 (549)
++|+|++|++
T Consensus 312 l~pir~~~~~ 321 (323)
T 2cyb_A 312 LEDARKRLGV 321 (323)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHhc
Confidence 9999999975
No 7
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=100.00 E-value=1.9e-64 Score=526.31 Aligned_cols=323 Identities=21% Similarity=0.339 Sum_probs=265.5
Q ss_pred CCCHHHHHHHHHcccccccCHHHHHHHHhc-CCceEEEeecCCCccchhhh-HHHHHHHHHHHcCCcEEEEEeCceeeec
Q psy5948 16 SLSFDEKKQLITRNLQEFLGEDRLNVILKE-RDLKIYWGTATTGRPHIAYF-VPMSKIADFLRAGCEVTILFADLHAYLD 93 (549)
Q Consensus 16 ~~~~~~~~~li~R~~~ei~~~~~L~~~l~~-~~~~v~~Gi~PTG~lHIGn~-~~~~~l~~l~~~G~~v~ilIaD~~a~~~ 93 (549)
.|+.++|+++++|++.|++++++|+++|+. +++++|+||+|||.|||||| ++++.+++||++|++++++|||+||+++
T Consensus 8 ~~~~~~~~~l~~r~~~e~~~~~~L~~~L~~~~~~~vy~G~~PTg~lHlGhyl~~l~~~~~lQ~~G~~~~~~i~D~~a~~~ 87 (348)
T 2j5b_A 8 HTNNEHRLTQLLSIAEECETLDRLKQLVDSGRIFTAYNGFEPSGRIHIAQALITVMNTNNMIECGGQMIIYIADWFAKMN 87 (348)
T ss_dssp HHHHHHHHHHHHTTCSEESCHHHHHHHHHHTCCEEEEEEECCCSSCBHHHHHHHHHHHHHHHHTTEEEEEEECHHHHHHT
T ss_pred CCCHHHHHHHHHcCcccccCHHHHHHHHhcCCCCEEEeccCCCCCCchhHHHHHHHHHHHHHHcCCcEEEEeccchhhhC
Confidence 467899999999999999999999999985 78899999999999999995 5778899999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHccCCCCCeeEEEEcccc-ccccccHHHHHHHHcccCHHHHHHhhHHHhh-hccCC
Q psy5948 94 NMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDY-QLSKEYTLDVYRLSSVITEHDAKKAGAEVVK-QVEHP 171 (549)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS~~-~~~~~~~~~~~~l~~~~t~~~~k~~~~~~~~-~~~~~ 171 (549)
++.+ .+..+.+.+... +.+.|+|+|+||+++.||+||+| +.+..+|..+..++++++.+++++......+ ..++.
T Consensus 88 ~~~~-~~~e~i~~~~~~--~~~~~la~Gldp~k~~i~~qs~~~~~~~~~~~~~~~v~~~~~~~~m~~~~~~~~r~~~~~i 164 (348)
T 2j5b_A 88 LKMN-GDINKIRELGRY--FIEVFKACGINLDGTRFIWASEFIASNPSYIERMLDIAEFSTISRVKRCCQIMGRNESDCL 164 (348)
T ss_dssp TGGG-GCHHHHHHHHHH--HHHHHHHTTCCGGGEEEEEHHHHHHHCHHHHHHHHHHHHHHHHHHHTC-------------
T ss_pred CCCC-CCHHHHHHHHHH--HHHHHHHhcCCccceEEEECCHhhhhhhHHHHHHHHHHhheeHHHHHhhhhhhhhhccCCc
Confidence 7531 233344444332 23568899999999999999998 4455566555567776666665432111111 12356
Q ss_pred CcccchhhHHhhcccccc---cCcEEEecccchhhHHHHHHhhhhcCCCceeEEecccccCC-CC-CCccCCCCCCeeec
Q psy5948 172 LLSGLLYPGLQALDEEYL---KVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGL-AG-GKMSSSEEDSKIDL 246 (549)
Q Consensus 172 ~~~~~~YP~LqAaDil~~---~~d~~~gG~DQ~~~~~~~r~l~~~~~~~~~~~l~~plL~~l-~G-~KMSKS~~~s~I~L 246 (549)
++++|+||+|||||++++ ++++||||.|||+|++++|++++++|...|+.+++|+|+|| +| +|||||.++++|||
T Consensus 165 ~~g~f~YP~lQaaDil~~~~~~~~~~~~G~DQ~~~i~l~Rdia~r~~~~~p~~~~~~~l~gL~dg~~KMSKS~~~~~I~L 244 (348)
T 2j5b_A 165 KASQIFYPCMQAADVFELVPEGIDICQLGIDQRKVNMLAIEYANDRGLKIPISLSHHMLMSLSGPKKKMSKSDPQGAIFM 244 (348)
T ss_dssp ----CCHHHHHHHHHHHSSTTCCSEECCBGGGHHHHHHHHHHHHHTTCCCCEEEEBCCCCCTTCSSCCCSTTCGGGSCBT
T ss_pred ChHHHhhHHHHHHHHHHHhcCCCcEEEeccChHHHHHHHHHHHHHhCCCCceeecCccccCCCCcccccccCCCCCeEee
Confidence 899999999999999999 99999999999999999999999999988888999999999 56 79999997779999
Q ss_pred cCCHHHHHHHHHhccCCCCCCCcchhhchhhhheecccCCCcceeeeecccCCCCCCCCCHHHHHHHHHcCCCChHHHHH
Q psy5948 247 LDAPALVKKKLKKAFCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPADLKA 326 (549)
Q Consensus 247 ~Dsp~~i~kKI~~A~td~~~~~~~~v~~~~k~~lf~~~~~~~~~~i~~~~~~g~~~~~~~~eel~~~~~~g~l~~~dlK~ 326 (549)
+|+|++|++|||+|+|||++++ |++..|+++++|++++. |+|. +.+++++++|+++|. +++|++||+
T Consensus 245 ~d~p~~i~kKI~ka~td~~~~~-~~~~~~~~~~~~~~~~~---~~i~-------~~~~~~~~el~~~~~--~~~~~~~K~ 311 (348)
T 2j5b_A 245 DDTEQEVSEKISRAYCTDETFD-NPIFEYIKYLLLRWFGT---LNLC-------GKIYTDIESIQEDFS--SMNKRELKT 311 (348)
T ss_dssp TCCHHHHHHHHHHSCCCSSSTT-CHHHHHHHHTHHHHHSC---EEET-------TEEESSHHHHHHHHT--TSCHHHHHH
T ss_pred cCCHHHHHHHHhcccCCCCCCC-CchHhHHHHhhhhhhcc---cccc-------cCCcchHHHHHHHHc--ccCHHHHHH
Confidence 9999999999999999999988 99999999999998885 6654 234578999999999 589999999
Q ss_pred HHHHHHHHhcCchhhhhcchHHHHHhhh
Q psy5948 327 AAEFYINRLLEPIRKKFESKELKDLTSK 354 (549)
Q Consensus 327 ~Lae~l~~~l~pir~~~~~~e~~~~~~~ 354 (549)
+||++|+++++|||++|++.++++++..
T Consensus 312 ~la~~l~~~l~pir~~~~~~~~~~~~~~ 339 (348)
T 2j5b_A 312 DVANYINTIIDLVREHFKKPELSELLSN 339 (348)
T ss_dssp HHHHHHHHHHHHHHHHTTSGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 9999999999999999997688876544
No 8
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=100.00 E-value=2.4e-61 Score=496.80 Aligned_cols=305 Identities=36% Similarity=0.624 Sum_probs=266.4
Q ss_pred HHHHHHcccccccCHHHHHHHHhcCCceEEEeecCCCccchhhhHHHHHHHHHHHcCCcEEEEEeCceeeecCCCChhHH
Q psy5948 22 KKQLITRNLQEFLGEDRLNVILKERDLKIYWGTATTGRPHIAYFVPMSKIADFLRAGCEVTILFADLHAYLDNMKAPWEL 101 (549)
Q Consensus 22 ~~~li~R~~~ei~~~~~L~~~l~~~~~~v~~Gi~PTG~lHIGn~~~~~~l~~l~~~G~~v~ilIaD~~a~~~~~~~~~~~ 101 (549)
+++|++|++.|++++++|+++|+++++++|+||+|||.|||||+++++.+++||++|++++++|||+||++++ ++..+
T Consensus 3 ~~~l~~r~~~e~~~~~~l~~~L~~~~~~vy~G~~PTg~lHlGhl~~l~~~~~lQ~~g~~~~~~i~D~~a~~~~-~~~~e- 80 (314)
T 2zp1_A 3 EFEMIKRNTSEIISEEELREVLKKDEKSAYIGFEPSGKIHLGHYLQIKKMIDLQNAGFDIIILLADLAAYLNQ-KGELD- 80 (314)
T ss_dssp HHHHHHTTCSEEETHHHHHHHHTSSSEEEEEEECCCSSCBHHHHHHHHHHHHHHHTTEEEEEEECHHHHHHTT-CCCHH-
T ss_pred HHHHHHcCCeecCCHHHHHHHHcCCCCEEEEccCCCCCcchhhHHHHHHHHHHHHCCCCEEEEEecceEecCC-CCCHH-
Confidence 8899999999999999999999988999999999999999999888889999999999999999999999997 53332
Q ss_pred HHHHHHHHHHHHHHHHHccCCCCCeeEEEEccccccccccHHHHHHHHcccCHHHHHHhhHHHhhhccCCCcccchhhHH
Q psy5948 102 LALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLSKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGL 181 (549)
Q Consensus 102 ~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~k~~~~~~~~~~~~~~~~~~~YP~L 181 (549)
+.+.+... +.+.|+|+|+| +.|++||+|+.+..+|..+..+++.++..++.+......+..+..++++|+||+|
T Consensus 81 -~i~~~~~~--~~~~~~a~G~d---~~~~~qs~~~~~~~~~~~~~~l~~~~t~~~l~~~~~~~~~~~~~~~~g~~~YP~L 154 (314)
T 2zp1_A 81 -EIRKIGDY--NKKVFEAMGLK---AKYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMELIAREDENPKVAEVIYPIM 154 (314)
T ss_dssp -HHHHHHHH--HHHHHHHTTCC---CEEEEGGGTTTSHHHHHHHHHHHHHSCHHHHHHHTTTTSCCCSSCCTHHHHHHHH
T ss_pred -HHHHHHHH--HHHHHHhcCCC---eEEEECChhhcchHHHHHHHHHHCcCcHHHHhccchhhhhccCCCCchhhhhHHH
Confidence 33333322 34678899998 7899999997775667777789999999988764221111112238999999999
Q ss_pred hhcccccccCcEEEecccchhhHHHHHHhhhhcCCCceeEEecccccCCCC-CCccCCCCCCeeeccCCHHHHHHHHHhc
Q psy5948 182 QALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAG-GKMSSSEEDSKIDLLDAPALVKKKLKKA 260 (549)
Q Consensus 182 qAaDil~~~~d~~~gG~DQ~~~~~~~r~l~~~~~~~~~~~l~~plL~~l~G-~KMSKS~~~s~I~L~Dsp~~i~kKI~~A 260 (549)
||||++++++++||||.|||+|++++|++++ .+|+.+++|+|++++| +||||| ++|+|||+|+|++|++|||+|
T Consensus 155 QaaDil~~~~~~v~~G~DQ~~~~~l~R~i~~----~~~~~~~~~~l~~l~G~~KMSKS-~~~~I~L~d~~~~i~~KI~~a 229 (314)
T 2zp1_A 155 QVNTSHYLGVDVAVGGMEQRKIHMLARELLP----KKVVCIHNPVLTGLDGEGKMSSS-KGNFIAVDDSPEEIRAKIKKA 229 (314)
T ss_dssp HHHHHHHHTCSEEEEEGGGHHHHHHHHHHSS----SCCEEEEECCCBCTTSSSBCCTT-TTCSCBTTCCHHHHHHHHHHS
T ss_pred HHHhHHhhCCCEEEcChhHHHHHHHHHHhcC----CCcEEeeccccccCCcccccCCC-CcceecCCCCHHHHHHHHHhC
Confidence 9999999999999999999999999999986 4788899999999999 899999 557999999999999999999
Q ss_pred cCCCCCCCcchhhchhhhheecccCCCcceeeeecccCCCCCCCCCHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCchh
Q psy5948 261 FCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPADLKAAAEFYINRLLEPIR 340 (549)
Q Consensus 261 ~td~~~~~~~~v~~~~k~~lf~~~~~~~~~~i~~~~~~g~~~~~~~~eel~~~~~~g~l~~~dlK~~Lae~l~~~l~pir 340 (549)
+|||+++++|++++|+++++ .. + ++|+|++++|++.++.++++|+++|.+|+++|++||++||++|+++++|+|
T Consensus 230 ~td~~~~~~~~~~~~~~~~~----~~-~-~~i~r~~k~g~~~~~~~~eei~~~~~~g~~~~~~~K~~la~~i~~~l~p~r 303 (314)
T 2zp1_A 230 YCPAGVVEGNPIMEIAKYFL----EY-P-LTIKRPEKFGGDLTVNSYEELESLFKNKELHPMYLKNAVAEELIKILEPIR 303 (314)
T ss_dssp CCCTTCCTTCHHHHHHHHHC----CS-S-EEECCCGGGTCCEEESSHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCcHHHHHHHHh----cC-C-cceeehhhccCCCCcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999654 22 2 888999999999999999999999999999999999999999999999999
Q ss_pred hhhcc
Q psy5948 341 KKFES 345 (549)
Q Consensus 341 ~~~~~ 345 (549)
++|+.
T Consensus 304 ~~~~~ 308 (314)
T 2zp1_A 304 KRLLE 308 (314)
T ss_dssp HHHHC
T ss_pred HHHHc
Confidence 99984
No 9
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=100.00 E-value=4.7e-60 Score=529.15 Aligned_cols=327 Identities=27% Similarity=0.377 Sum_probs=273.2
Q ss_pred CCCCHHHHHHHHHcccccccCHHHHHHHHhc-CCceEEEeecCCCccchhhhHHH-HHHHHHHHcCCcEEEEEeCceeee
Q psy5948 15 PSLSFDEKKQLITRNLQEFLGEDRLNVILKE-RDLKIYWGTATTGRPHIAYFVPM-SKIADFLRAGCEVTILFADLHAYL 92 (549)
Q Consensus 15 ~~~~~~~~~~li~R~~~ei~~~~~L~~~l~~-~~~~v~~Gi~PTG~lHIGn~~~~-~~l~~l~~~G~~v~ilIaD~~a~~ 92 (549)
--|+.++|+++|+|++.|++++++|+++|++ ++++||+||+|||.+||||++.. +.+++||++|++++++|||+||++
T Consensus 7 ~~~~~~~~~~~~~~~~~e~~~~~eL~~~L~~~~~~~vy~G~~PTg~lHLG~~v~~~~~~~~lQ~~G~~~~~lIaD~ha~~ 86 (690)
T 3p0j_A 7 HHMNTDERYKLLRSVGEECIQESELRNLIEKKPLIRCYDGFEPSGRMHIAQGIFKAVNVNKCTAAGCEFVFWVADWFALM 86 (690)
T ss_dssp CCCCHHHHHHHHHHTCSEEECHHHHHHHHHHCTTEEEEEEECCCSCCBHHHHHHHHHHHHHHHHTTEEEEEEECCGGGGG
T ss_pred cccCHHHHHHHHhhCceeecCHHHHHHHHhcCCCceEEeeecCCCcchhHhhHHHHHHHHHHHHCCCcEEEEEeeeEEEe
Confidence 4588999999999999999999999999985 68899999999999999997653 357889999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHHHHHHHHHHccCCCCCeeEEEEcccc-ccccc-cHHHHHHHHcccCHHHHHHhhHHHhhhccC
Q psy5948 93 DNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDY-QLSKE-YTLDVYRLSSVITEHDAKKAGAEVVKQVEH 170 (549)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS~~-~~~~~-~~~~~~~l~~~~t~~~~k~~~~~~~~~~~~ 170 (549)
+++.+ .+..+.+.+... +.+.|+|+|+||++++||+||+| +.+.+ +|..+..+++++|..++.+......+...+
T Consensus 87 ~d~~~-~~~e~i~~~~~~--~~~~~lA~GlDp~k~~i~~qS~~v~~~~~l~~~~~~~i~~~~tv~~m~~~~~~~~r~~~~ 163 (690)
T 3p0j_A 87 NDKVG-GELEKIRIVGRY--LIEVWKAAGMDMDKVLFLWSSEEITSHADTYWRMVLDIGRQNTIARIKKCCTIMGKTEGT 163 (690)
T ss_dssp GCTTT-THHHHHHHHHHH--HHHHHHHTTCCGGGEEEEEHHHHHTTSHHHHHHHHHHHHHTSCHHHHHTTC-------CC
T ss_pred cCCCc-chHHHHHHHHHH--HHHHHHHcCCChHHeEEEechHHHHhhHHHHHHHHHHHHhhCCHHHHHhhhhhhhhccCC
Confidence 97543 344555554432 24678999999999999999996 55554 565667788899988876532222222234
Q ss_pred CCcccchhhHHhhcccccccCcEEEecccchhhHHHHHHhhhhcCCC-ceeEEecccccCC-CC-CCccCCCCCCeeecc
Q psy5948 171 PLLSGLLYPGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYA-KRIHFMNPMVPGL-AG-GKMSSSEEDSKIDLL 247 (549)
Q Consensus 171 ~~~~~~~YP~LqAaDil~~~~d~~~gG~DQ~~~~~~~r~l~~~~~~~-~~~~l~~plL~~l-~G-~KMSKS~~~s~I~L~ 247 (549)
.++++|+||+||||||+++++|+||||.|||+|++++|++++++|.. +|+.+++|+|+|| +| +|||||.++|+|||+
T Consensus 164 i~~g~f~YPlLQAaDil~~~ad~vpvG~DQ~~~l~l~Rdla~r~n~~~~p~~l~~~~l~gL~dG~~KMSKS~~~~~I~L~ 243 (690)
T 3p0j_A 164 LTAAQVLYPLMQCCDIFFLKADICQLGLDQRKVNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFME 243 (690)
T ss_dssp CCCSCSSHHHHHHHHHHHTTCSEECCBGGGHHHHHHHHHHHHHTTCCCCCEEEEBCCCCCSSTTCSSCBTTBGGGSCBTT
T ss_pred CchhhHhhHHHHHHHHHhhCCCEEeccccHHHHHHHHHHHHHHhCCCCCceEeecCeeecCCCCCcCCCCCCCCCeeecc
Confidence 78999999999999999999999999999999999999999999986 5788899999999 88 599999997799999
Q ss_pred CCHHHHHHHHHhccCCCCC---------------CCcchhhchhhhheecccCCCcceeeeecccCCCCCCCCCHHHHHH
Q psy5948 248 DAPALVKKKLKKAFCEPGN---------------VEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQ 312 (549)
Q Consensus 248 Dsp~~i~kKI~~A~td~~~---------------~~~~~v~~~~k~~lf~~~~~~~~~~i~~~~~~g~~~~~~~~eel~~ 312 (549)
|+|++|++|||+|+|||+. +++|++++|+++++|+.... .+.+|+. +++++++|++
T Consensus 244 D~p~~i~kKI~~A~td~~~~~~~~~~d~g~~~~~~~~~~v~~y~~~~~~~~~~~--------~~~~~~~-~~~~~eel~~ 314 (690)
T 3p0j_A 244 DTEEDVARKIRQAYCPRVKQSASAITDDGAPVATDDRNPVLDYFQCVVYARPGA--------AATIDGT-TYATYEDLEQ 314 (690)
T ss_dssp CCHHHHHHHHHTSCCCSSCCCCCCCCTTCCCCCCSSCCHHHHHHHHTTTTSTTC--------CEEETTE-EESSHHHHHH
T ss_pred CCHHHHHHHHHhCcCCCcccccccccCCCCcccCCCCchHHHHHHHhhcccccc--------cccccCC-CcchHHHHHH
Confidence 9999999999999999765 47889999999877775442 1134443 5689999999
Q ss_pred HHHcCCCChHHHHHHHHHHHHHhcCchhhhhcc-hHHHHHhh
Q psy5948 313 VFAKQELHPADLKAAAEFYINRLLEPIRKKFES-KELKDLTS 353 (549)
Q Consensus 313 ~~~~g~l~~~dlK~~Lae~l~~~l~pir~~~~~-~e~~~~~~ 353 (549)
+|.+|+++|++||++|++.|+++|+|||++|++ .++++.+.
T Consensus 315 ~y~~G~l~~~dlK~~lae~i~~~L~Pirer~~~~~~~~~~l~ 356 (690)
T 3p0j_A 315 AFVSDEVSEDALKSCLIDEVNALLEPVRQHFASNEEAHELLE 356 (690)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHH
Confidence 999999999999999999999999999999994 66776555
No 10
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.1e-58 Score=484.98 Aligned_cols=294 Identities=19% Similarity=0.235 Sum_probs=235.0
Q ss_pred HHHHHcccccccCHHHHHHHH---h-cCCceEEEeecCCCccchhhhHHHHHHHHHHH-cCCcEEEEEeCceeeecCCCC
Q psy5948 23 KQLITRNLQEFLGEDRLNVIL---K-ERDLKIYWGTATTGRPHIAYFVPMSKIADFLR-AGCEVTILFADLHAYLDNMKA 97 (549)
Q Consensus 23 ~~li~R~~~ei~~~~~L~~~l---~-~~~~~v~~Gi~PTG~lHIGn~~~~~~l~~l~~-~G~~v~ilIaD~~a~~~~~~~ 97 (549)
+.+++||+ |+++++++.++ + ++++++|+||+|||.+|||||++++.+++||+ .|++++|+|||+||+++++..
T Consensus 47 h~~~~Rg~--i~~~~d~~~l~~~~~~~~p~~i~sG~~PTG~lHLGh~v~~~~~~~lQ~~~g~~~~i~IaD~ha~~~~~~~ 124 (392)
T 3jxe_A 47 PIFFRRKF--FFSHRDYDLILKDYEEGRGFFLYTGRGPSGPMHIGHIIPFFATKWLQEKFGVNLYIQITDDEKFLFKENL 124 (392)
T ss_dssp CHHHHTTS--EEEEESHHHHHHHHHTTCCCEEEEEECCSSCCBHHHHHHHHHHHHHHHHHCCEEEEEECHHHHHHHCSSC
T ss_pred HHHHhCcC--cccccCHHHHHHHHhcCCCeEEEeccCCCCchhHHHHHHHHHHHHHHHhcCCceEEEecchHHhhcCCCC
Confidence 48899998 77777665544 3 47999999999999999999999987888887 799999999999999987532
Q ss_pred hhHHHHHHHHHHHHHHHHHHHccCCCCCeeEEEEccccccccccHHHHHHHHcccCHHHHHHhhHHHhhhccCCCcccch
Q psy5948 98 PWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLSKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLL 177 (549)
Q Consensus 98 ~~~~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~k~~~~~~~~~~~~~~~~~~~ 177 (549)
. ..+.+.+..++ .+.|+|+|+||+++.||+||+|+. ++..+..+++++|.+++++.. ...++.++++|+
T Consensus 125 ~--~e~i~~~~~~~--~~~~lA~GlDp~kt~i~~qS~~~~---~~~~~~~l~~~~t~~~~~~~~----~~~~~~~~g~f~ 193 (392)
T 3jxe_A 125 T--FDDTKRWAYDN--ILDIIAVGFDPDKTFIFQNSEFTK---IYEMAIPIAKKINFSMAKAVF----GFTEQSKIGMIF 193 (392)
T ss_dssp C--HHHHHHHHHHH--HHHHHTTCCCTTSEEEEETTTSTH---HHHHHHHHHHHSBHHHHHHHH----CCCTTSBHHHHH
T ss_pred C--HHHHHHHHHHH--HHHHHHhCcCccceEEEECchhHH---HHHHHHHHHhhCCHHHHhhhh----ccCCCCchHHHH
Confidence 2 23444444332 357889999999999999999964 666677788999999876642 123567899999
Q ss_pred hhHHhhcccccc-cCcEEEecccchhhHHHHHHhhhhcCCCceeEEecccccCCCC--CCccCCCCCCeeeccCCHHHHH
Q psy5948 178 YPGLQALDEEYL-KVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAG--GKMSSSEEDSKIDLLDAPALVK 254 (549)
Q Consensus 178 YP~LqAaDil~~-~~d~~~gG~DQ~~~~~~~r~l~~~~~~~~~~~l~~plL~~l~G--~KMSKS~~~s~I~L~Dsp~~i~ 254 (549)
||+|||||++++ .+|++|||.||++|++++|++++++|+.+|..+++|+|+||+| +|||||.++|+|||+|+|++|+
T Consensus 194 YP~LQaaDil~~~~a~~vpvG~DQ~~hl~l~Rdla~r~n~~~p~~l~~~~l~gLdG~~~KMSKS~~ns~I~L~D~p~~I~ 273 (392)
T 3jxe_A 194 FPAIQIAPTFFERKRCLIPAAIDQDPYWRLQRDFAESLGYYKTAALHSKFVPSLTSLSGKMSASKPETAIYLTDSPEDVE 273 (392)
T ss_dssp HHHHHHGGGGSSSSCEEEEEEGGGHHHHHHHHHHTGGGTSCCCEEEEECCCCCSSCSSSCCCTTSGGGCCBTTCCHHHHH
T ss_pred HHHHHHhhHHhhcCCceeecccchHHHHHHHHHHHHHcCCCCCeeeecccccCCCCCccccccCCCCCeeeCCCCHHHHH
Confidence 999999999999 5999999999999999999999999998899999999999999 5999999988999999999999
Q ss_pred HHHHh-ccCCCCCC-------CcchhhchhhhheecccCCCcceeeeecccCCCCCCCCCHHHHHHHHHcCCCChHHHHH
Q psy5948 255 KKLKK-AFCEPGNV-------EDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPADLKA 326 (549)
Q Consensus 255 kKI~~-A~td~~~~-------~~~~v~~~~k~~lf~~~~~~~~~~i~~~~~~g~~~~~~~~eel~~~~~~g~l~~~dlK~ 326 (549)
+|||+ |+||+..+ ..||..+ ++|.+++. |... +.+++++|+++|.+|+++|++||+
T Consensus 274 kKI~k~A~td~~~~~~~~~~~~~~P~~~----~~~~~l~~---~~~~---------~~~~~eel~~~~~~G~l~~gdlK~ 337 (392)
T 3jxe_A 274 KKVWKFTLTGGRPTLKEQREKGGEPEKC----VVFKWLEI---FFEE---------DDKKLKERYYACKNGELTCGECKR 337 (392)
T ss_dssp HHHHTCC--------------------C----HHHHHHHH---TTCC---------CHHHHHHHHHHHHTTSSCHHHHHH
T ss_pred HHHHhhccCCCCcccccccccCCCCchh----HHHHHHHH---HHcC---------CcchHHHHHHHHhcCCCCHHHHHH
Confidence 99999 99998542 1233221 12222221 2101 135899999999999999999999
Q ss_pred HHHHHHHHhcCchhhhhcc
Q psy5948 327 AAEFYINRLLEPIRKKFES 345 (549)
Q Consensus 327 ~Lae~l~~~l~pir~~~~~ 345 (549)
+|+++|+++|+|+|+||++
T Consensus 338 ~lae~i~~~l~pirer~~~ 356 (392)
T 3jxe_A 338 YLISKIQEFLKEHQRRRKK 356 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999984
No 11
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=100.00 E-value=8.9e-57 Score=471.72 Aligned_cols=288 Identities=19% Similarity=0.200 Sum_probs=235.7
Q ss_pred HHHHHcccccccCHHHHHHHHh----cCCceEEEeecCCCccchhhhHHHHHHHHHHHcCCcEEEEEeCceeeecCCCCh
Q psy5948 23 KQLITRNLQEFLGEDRLNVILK----ERDLKIYWGTATTGRPHIAYFVPMSKIADFLRAGCEVTILFADLHAYLDNMKAP 98 (549)
Q Consensus 23 ~~li~R~~~ei~~~~~L~~~l~----~~~~~v~~Gi~PTG~lHIGn~~~~~~l~~l~~~G~~v~ilIaD~~a~~~~~~~~ 98 (549)
+.++|||+ +++||+|+.+|+ +++++||||++|||.+|||||+++.+++++|+.|++++|+|||+||++.+....
T Consensus 44 h~~lrRgi--~f~hRd~d~il~~~e~gk~~~v~sG~~PTG~lHLGhyv~~~~~~~lq~~~~~~~~~IaD~ha~t~~~~~~ 121 (372)
T 3a04_A 44 SFLMRRGI--IFGHRDFDKILEAKARGERVAVLTGFMPSGKFHFGHKLTVDQLIYLQKNGFKVFVAIADAEAFAVRRIGR 121 (372)
T ss_dssp CHHHHTTS--EEEEESHHHHHHHHHTTCCCEEEEEECCCSCCBHHHHHHHHHHHHHHHTTCEEEEEECHHHHHHTTCCCH
T ss_pred chhhccce--eeeccCHHHHHHHHHcCCCCEEEeCcCCCcHhHHHHHHHHHHHHHHHhCCCeEEEEEecchhhccCCCCC
Confidence 57899999 999999998886 489999999999999999999999999999999999999999999999753332
Q ss_pred hHHHHHHHHHHHHHHHHHHHccCCCCCeeEEEEccccccccccHHHHHHHHcccCHHHHHHhhHHHhhhccCCCcccchh
Q psy5948 99 WELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLSKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLY 178 (549)
Q Consensus 99 ~~~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~k~~~~~~~~~~~~~~~~~~~Y 178 (549)
. ...+.+..+. .+.|+|||+||++++||+||++ ..+++..+..++...+..++++.. ...+.+.|+|
T Consensus 122 ~--e~~r~~~~~~--~~~~lA~GlDP~kt~if~qS~~--~~~~~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~y 188 (372)
T 3a04_A 122 E--EAVRIAVEEY--IANMIALGLDPKDTEFYFQTNR--GTPYFRLIQLFSGKVTAAEMEAIY-------GELTPAKMMA 188 (372)
T ss_dssp H--HHHHHHHHTT--HHHHHHHTCCTTTCEEEEGGGS--CHHHHHHHHHHTTSSCHHHHHHHH-------SSCCHHHHHH
T ss_pred H--HHHHHHHHHH--HHHHHHcCCChHHcchhhhccc--hHHHHHHHHHHHhhhhHHHHhhhh-------hccCcccccC
Confidence 2 2334444432 4678999999999999999986 233444455566677777765432 3457788999
Q ss_pred hHHhhccccccc--------CcEEEecccchhhHHHHHHhhhhcC----CCceeEEecccccCCCCCCccCCCCCCeeec
Q psy5948 179 PGLQALDEEYLK--------VDAQFGGVDQRKIFTLAEKYLPQLG----YAKRIHFMNPMVPGLAGGKMSSSEEDSKIDL 246 (549)
Q Consensus 179 P~LqAaDil~~~--------~d~~~gG~DQ~~~~~~~r~l~~~~~----~~~~~~l~~plL~~l~G~KMSKS~~~s~I~L 246 (549)
|+||||||++++ ++++|+|.||++|++++|++++++| ..+|..+++++++|++|.|||||+++|+|+|
T Consensus 189 P~lqAaDil~~~~d~~~gy~a~~VPVG~DQ~~hleltRdiA~rfn~~~~~~~P~~~~~~~~pgldG~KmS~S~~ns~I~l 268 (372)
T 3a04_A 189 SLTQAADILHVQLDEYGGYRHVVVPVGADQDPHLRLTRDLADRMAGVVELERPASTYHKLQPGLDGRKMSSSRPDSTIFL 268 (372)
T ss_dssp HHHHHHHHHGGGSGGGTCCCCEEEEEEGGGHHHHHHHHHHHHHTTTTSCCCCCEEEEECCCBCTTSSBCCTTSGGGSCBT
T ss_pred CcchhHHHhhhcCccccCccceecccchhhHHHHHHHHHHHHHhcCcccccChhhhhhcccCCCCCCccCCCCCCccccc
Confidence 999999999954 5599999999999999999999998 3567888999999999999999999999999
Q ss_pred cCCHHHHHHHHHhccCCCCCC-----------CcchhhchhhhheecccCCCcceeeeecccCCCCCCCCCHHHHHHHHH
Q psy5948 247 LDAPALVKKKLKKAFCEPGNV-----------EDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFA 315 (549)
Q Consensus 247 ~Dsp~~i~kKI~~A~td~~~~-----------~~~~v~~~~k~~lf~~~~~~~~~~i~~~~~~g~~~~~~~~eel~~~~~ 315 (549)
+|+|++|++|||+|+||+..+ +.+.++.+. ++.. + + ..+++++++++|+
T Consensus 269 ~D~p~~i~kKI~ka~td~~~~~~~~~~~~G~p~~~~i~~~~------l~~~---~--~---------d~~e~~ei~~~y~ 328 (372)
T 3a04_A 269 TDPPEVARNKLFRALTGGRATAEEQRRLGGVPEVCSVYHMD------LYHL---M--P---------DDGEVKHIYTSCR 328 (372)
T ss_dssp TCCHHHHHHHHHTCCCSCCSSHHHHHHHCCCGGGCHHHHHH------HHTT---C--C---------SHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcCccCCCCCcccccccCCCCchhhHHHHH------HHcc---C--C---------CHHHHHHHHHHHh
Confidence 999999999999999997543 223333221 1111 1 1 1257899999999
Q ss_pred cCCCChHHHHHHHHHHHHHhcCchhhhhcc
Q psy5948 316 KQELHPADLKAAAEFYINRLLEPIRKKFES 345 (549)
Q Consensus 316 ~g~l~~~dlK~~Lae~l~~~l~pir~~~~~ 345 (549)
+|+++|++||+.|++.|+++|+|+|+||++
T Consensus 329 ~G~l~~ge~K~~l~e~l~~~l~p~rer~e~ 358 (372)
T 3a04_A 329 LGKILCGECKQIAWEKLERFLAEHQSRLEK 358 (372)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999863
No 12
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=100.00 E-value=1.5e-56 Score=472.49 Aligned_cols=292 Identities=18% Similarity=0.205 Sum_probs=242.5
Q ss_pred HHHHHcccccccCHHHHHHHHh----cCCceEEEeecCCC-ccchhhhHHHHHHHHHHHc-CCcEEEEEeCceeeecCCC
Q psy5948 23 KQLITRNLQEFLGEDRLNVILK----ERDLKIYWGTATTG-RPHIAYFVPMSKIADFLRA-GCEVTILFADLHAYLDNMK 96 (549)
Q Consensus 23 ~~li~R~~~ei~~~~~L~~~l~----~~~~~v~~Gi~PTG-~lHIGn~~~~~~l~~l~~~-G~~v~ilIaD~~a~~~~~~ 96 (549)
+.+++||+ |+++++++.+++ ++++++|+||+||| .+|||||++++.++|||++ |+.++|+|||+||++++.-
T Consensus 75 h~~~~RG~--i~~~~d~~~ll~~~~~~~p~~vy~G~~PTg~~lHLGh~v~~~~~~~lQ~~~g~~~~i~IaD~~a~l~~~~ 152 (406)
T 3tze_A 75 HYFFRRGI--VFAHRDFNLLLDEIANNRPFYLYTGRGPSSKTMHIGHTIPFLLCKYMQDAFKIRLVIQITDDEKFLWKSM 152 (406)
T ss_dssp CHHHHTTS--EEEEESHHHHHHHHHTTCCEEEEEEECCCSSCCBGGGHHHHHHHHHHHHHHTCCEEEEECHHHHHHHSSC
T ss_pred HHHHhCCC--eeccccHHHHHHHHhcCCCeEEEEeeCCCCCcccHHHHHHHHHHHHHHHhcCCcEEEEeeChHHHcCCCC
Confidence 48899999 888887776664 47899999999999 6999999999888999987 9999999999999977533
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHccCCCCCeeEEEEccccccccccHHHHHHHHcccCHHHHHHhhHHHhhhccCCCcccc
Q psy5948 97 APWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLSKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGL 176 (549)
Q Consensus 97 ~~~~~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~k~~~~~~~~~~~~~~~~~~ 176 (549)
++ .+.+.+..+ +.+.|+|+|+||+++.||.||+|.. .++..+.++++++|.++++... ...++.++++|
T Consensus 153 ~~---e~i~~~~~~--~~~~~lA~GlDp~k~~i~~qs~~~~--~~~~~~~~L~r~~t~~~~~~~~----g~~~~~s~g~f 221 (406)
T 3tze_A 153 RL---EDAMAYGRE--NIKDIVTLGFDPKLTYIFSNVEASH--HFEENILKISKTINLNEAIKVF----GFDMSSNIGQV 221 (406)
T ss_dssp CH---HHHHHHHHH--HHHHHHTTTCCGGGEEEEEHHHHGG--GGHHHHHHHHHTCBHHHHHHHH----CCCTTSBHHHH
T ss_pred CH---HHHHHHHHH--HHHHHHHcCCCccceEEEeccHhHH--HHHHHHHHHHhhCCHHHHHHhh----CCCCCCcchhh
Confidence 33 344444433 2357889999999999999999964 6788899999999999876642 12356789999
Q ss_pred hhhHHhhcccc--------cccCcEEEecccchhhHHHHHHhhhhcCCCceeEEecccccCCCC--CCccCCCCCCeeec
Q psy5948 177 LYPGLQALDEE--------YLKVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAG--GKMSSSEEDSKIDL 246 (549)
Q Consensus 177 ~YP~LqAaDil--------~~~~d~~~gG~DQ~~~~~~~r~l~~~~~~~~~~~l~~plL~~l~G--~KMSKS~~~s~I~L 246 (549)
+||+|||||++ .++++++|||.|||+|++++|++++++|+.+|+.+++|+|+||+| +|||||.++|+|||
T Consensus 222 ~YPlLQaaD~~~~~~p~il~~~a~lvpvG~DQ~~~i~l~Rdla~r~~~~~p~~l~~~~l~gLdG~~~KMSKS~~~~~I~L 301 (406)
T 3tze_A 222 GFPAKEIAPCFSSSFRFIGKGAMCLVPAAVDQDPFFRLARDKAKALGEKKPSSIYVSLLPDLKGVNRKMSASDPNSSIYL 301 (406)
T ss_dssp HHHHHHHGGGSGGGSTTSCTTCEEEEEEEGGGHHHHHHHHHHHHHHTCCCCEEEEECCCCCTTSCCCCSSCSCGGGSCBT
T ss_pred hhHHHhhhhhhccchHHhccCCCeEEeeccchHHHHHHHHHHHHHcCCCCceeeccCcccCCCCCCcCCCCCCCCCcccC
Confidence 99999999965 357999999999999999999999999999999999999999999 69999998789999
Q ss_pred cCCHHHHHHHHHh-ccCCCCCC-C-------cchhhchhhhheecccCCCcceeeeecccCCCCCCCCCHHHHHHHHHcC
Q psy5948 247 LDAPALVKKKLKK-AFCEPGNV-E-------DNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQ 317 (549)
Q Consensus 247 ~Dsp~~i~kKI~~-A~td~~~~-~-------~~~v~~~~k~~lf~~~~~~~~~~i~~~~~~g~~~~~~~~eel~~~~~~g 317 (549)
+|+|++|++|||+ |+||++.+ + ++.+. ++|.+++. |. . +.+++++|+++|.+|
T Consensus 302 ~D~p~~I~kKI~k~A~td~~~~~e~~~~~~g~p~v~-----~l~~~~~~---~~-~---------~~~~~eei~~~y~~G 363 (406)
T 3tze_A 302 DDAQDTIRKKIIAYAYSGGRKTLEEHREKGGDIDVD-----VPFEYLKY---FL-D---------DDQELEKYRSGYIKG 363 (406)
T ss_dssp TCCHHHHHHHHHHHCCCCCCCC-------CCCGGGC-----HHHHHHHH---HC-C---------CHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHhhccCCCcccccccccCCCCCccc-----HHHHHHHH---Hc-C---------CcchHHHHHHHHhcC
Confidence 9999999999999 99997442 1 12221 23444443 32 1 125799999999999
Q ss_pred CCChHHHHHHHHHHHHHhcCchhhhhcc
Q psy5948 318 ELHPADLKAAAEFYINRLLEPIRKKFES 345 (549)
Q Consensus 318 ~l~~~dlK~~Lae~l~~~l~pir~~~~~ 345 (549)
+++|++||++||+.|+++|+|+|+||++
T Consensus 364 ~l~~g~lK~~Lae~i~~~l~pirer~~~ 391 (406)
T 3tze_A 364 EITSKEMKEKCVVVIQEFVSRYQESRKR 391 (406)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999983
No 13
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=100.00 E-value=4.2e-57 Score=465.97 Aligned_cols=266 Identities=18% Similarity=0.201 Sum_probs=214.1
Q ss_pred CCceEEEeecCCCccchhhhHH-HHHHHHHHHcCCcEEEEEeCceeeecCCCChhHHHHHHHHHHHHHHHHHHHccCCCC
Q psy5948 46 RDLKIYWGTATTGRPHIAYFVP-MSKIADFLRAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPI 124 (549)
Q Consensus 46 ~~~~v~~Gi~PTG~lHIGn~~~-~~~l~~l~~~G~~v~ilIaD~~a~~~~~~~~~~~~~~~~~~~~~~i~~~l~a~Gldp 124 (549)
+..++|+||+|||.||||||++ +..+++||+ |++++++|||+||++++ .++ .+.+.+..+ +.+.|+|+|+||
T Consensus 2 ~~~~vysG~~PTg~lHlG~~lg~l~~~~~lQ~-g~~~~~~iaD~ha~~~~-~~~---~~l~~~~~~--~~~~~lA~Gldp 74 (322)
T 3tzl_A 2 NAMRVLTGLQPSGDLHIGNYFGAIKQMVDAQE-KSQMFMFIANYHAMTSS-QDG---EKLKQNSLK--AAAAFLSLGIDP 74 (322)
T ss_dssp --CCBEEEECCSSCCBHHHHHHTHHHHHHTTT-TSCCEEEECHHHHTTTC-CCH---HHHHHHHHH--HHHHHHHTTCCT
T ss_pred CceEEEEccCCCccccHHHHHHHHHHHHHHhc-CCCEEEEEecCeeecCC-CCH---HHHHHHHHH--HHHHHHHcCCCc
Confidence 3568999999999999999996 667888877 99999999999999986 334 344444444 246788999999
Q ss_pred CeeEEEEccccccccccHHHHHHHHcccCHHHHHHh--hHHHhhhccCCCcccchhhHHhhcccccccCcEEEecccchh
Q psy5948 125 SKLKFVKGTDYQLSKEYTLDVYRLSSVITEHDAKKA--GAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFGGVDQRK 202 (549)
Q Consensus 125 ~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~k~~--~~~~~~~~~~~~~~~~~YP~LqAaDil~~~~d~~~gG~DQ~~ 202 (549)
+++.||+||+|+.+.++.+. ++..++..++.+. +...+...++.++++|+||+||||||+++++|+||||.|||+
T Consensus 75 ~k~~i~~qS~~~~~~el~~~---l~~~~~~~~l~r~~~~K~~~~~~~~~~~g~f~YP~LQAaDil~~~~~~vpvG~DQ~~ 151 (322)
T 3tzl_A 75 QKSVFWLQSDVKEVMELYWI---LSQFTPMGLLERAHSYKDKVAKGLSASHGLFSYPVLMAADILLFDTRIVPVGKDQIQ 151 (322)
T ss_dssp TTSEEEEGGGCTHHHHHHHH---HGGGCBHHHHHSCHHHHHHHHTTCCCBHHHHHHHHHHHHHHHHTTCSEEECCGGGHH
T ss_pred cceEEEECCcchhHHHHHHH---HhccCcHHHHHhhhHHHHHHccCCCCchHHHHHHHHHHHHHHHhCCcEEEeccchHH
Confidence 99999999999866554432 2333344443221 111122235678999999999999999999999999999999
Q ss_pred hHHHHHHhhhhcCC-------Ccee--EEecccccCCCCCCccCCCCCCeeeccCCHHHHHHHHHhccCCC------CCC
Q psy5948 203 IFTLAEKYLPQLGY-------AKRI--HFMNPMVPGLAGGKMSSSEEDSKIDLLDAPALVKKKLKKAFCEP------GNV 267 (549)
Q Consensus 203 ~~~~~r~l~~~~~~-------~~~~--~l~~plL~~l~G~KMSKS~~~s~I~L~Dsp~~i~kKI~~A~td~------~~~ 267 (549)
|++++|++++++|. .|.. ..++|+|+||+|+|||||.++ +|||+|+|+++++||++|+||| +++
T Consensus 152 hi~l~Rdia~r~n~~~g~~f~~P~~~~~~~~~~l~~l~G~KMSKS~~n-~I~L~d~p~~i~~KI~~a~td~~~~~~~~~~ 230 (322)
T 3tzl_A 152 HVEIARDIALKVNNEWGEIFTLPEARVNEEVAVVVGTDGAKMSKSYQN-TIDIFSSEKTLKKQISSIVTDSTALEDPKDH 230 (322)
T ss_dssp HHHHHHHHHHHHHHHHCSCSCCCEEECCCSSCCCBCTTSSBCCGGGTC-CCBSSCCHHHHHHHHHTCCCCCCCTTSCCCG
T ss_pred HHHHHHHHHHHhcccccCCCCCchhhhccccccccCCCCCcCCCCCCC-ceecCCCHHHHHHHHHhccCCCccccCCCCC
Confidence 99999999999875 1222 235899999999999999996 8999999999999999999985 456
Q ss_pred CcchhhchhhhheecccCCCcceeeeecccCCCCCCCCCHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCchhhhhc
Q psy5948 268 EDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPADLKAAAEFYINRLLEPIRKKFE 344 (549)
Q Consensus 268 ~~~~v~~~~k~~lf~~~~~~~~~~i~~~~~~g~~~~~~~~eel~~~~~~g~l~~~dlK~~Lae~l~~~l~pir~~~~ 344 (549)
+++++++|+++ |+ +.+++++++++|.+|+++|++||++||++|+++|+|+|++|+
T Consensus 231 ~~~~v~~~~~~-----------~~-----------~~~~i~~l~~~~~~g~~~~~~~K~~lae~l~~~l~pir~~~~ 285 (322)
T 3tzl_A 231 ENCNIFKIAKL-----------FL-----------DESGQKELQIRYEKGGEGYGHFKIYLNELVNAYFKEAREKYN 285 (322)
T ss_dssp GGCHHHHHHGG-----------GC-----------CHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred cchhHHHHHHH-----------hC-----------ChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 66777777663 21 125799999999999999999999999999999999999998
No 14
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=100.00 E-value=2e-55 Score=468.63 Aligned_cols=294 Identities=21% Similarity=0.274 Sum_probs=236.2
Q ss_pred CCCCCHHHHHHHHHcccccccCHHHHHHHHh-cCCceEEEeecCCCc-cchhhhHHHHHHHHHHHcCCcEEEEEeCceee
Q psy5948 14 SPSLSFDEKKQLITRNLQEFLGEDRLNVILK-ERDLKIYWGTATTGR-PHIAYFVPMSKIADFLRAGCEVTILFADLHAY 91 (549)
Q Consensus 14 ~~~~~~~~~~~li~R~~~ei~~~~~L~~~l~-~~~~~v~~Gi~PTG~-lHIGn~~~~~~l~~l~~~G~~v~ilIaD~~a~ 91 (549)
...|+.++++++|+|++.|++++++|+++|+ ++++++|+||+|||+ ||||||++++.+++||++||+++++|||+||+
T Consensus 3 ~~~~~~~~~~~li~Rg~~e~~~~~~L~~~L~~~~~~~vy~G~dPTg~sLHlGh~v~l~~l~~lQ~~G~~~i~lIgD~ta~ 82 (432)
T 1h3f_A 3 GTGHTPEEALALLKRGAEEIVPEEELLAKLKEGRPLTVKLGADPTRPDLHLGHAVVLRKMRQFQELGHKVVLIIGDFTGM 82 (432)
T ss_dssp --CCCHHHHHHHHHTTCSEEETHHHHHHHHHTCSCCEEEEEECTTCCSCBHHHHHHHHHHHHHHHTTCEEEEEECCCC--
T ss_pred CCCCCHHHHHHHHHcchHHhCCHHHHHHHHhcCCCcEEEEcccCCCCCCchhhHHHHHHHHHHHHCCCCEEEEEccceEE
Confidence 4568999999999999999999999999996 688999999999997 99999999999999999999999999999999
Q ss_pred ecCCCChh------HHHHHHHHHHHHHHHHHHHccCCC--CCeeEEEEccccccccccHHHHHHHHcccCHHHHHHhh--
Q psy5948 92 LDNMKAPW------ELLALRTKYYEESIKAMLESIDVP--ISKLKFVKGTDYQLSKEYTLDVYRLSSVITEHDAKKAG-- 161 (549)
Q Consensus 92 ~~~~~~~~------~~~~~~~~~~~~~i~~~l~a~Gld--p~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~k~~~-- 161 (549)
++||+++. +....+.+... +.+.+ .+|+| |+++.||+||+|. ...++.++++++++++..++....
T Consensus 83 igdpsgk~~~R~~l~~e~i~~n~~~--~~~ql-~~~ld~~p~k~~i~~nSd~~-~~~~~~~~l~l~~~~tv~~ml~~~~~ 158 (432)
T 1h3f_A 83 IGDPSGRSKTRPPLTLEETRENAKT--YVAQA-GKILRQEPHLFELRYNSEWL-EGLTFKEVVRLTSLMTVAQMLEREDF 158 (432)
T ss_dssp -------------------HHHHHH--HHHHH-TTTSCCCTTTEEEEETHHHH-TTCBHHHHHHHHTTSBHHHHTTSHHH
T ss_pred ecCCCCcccccccCCHHHHHHHHHH--HHHHH-HHHhcCCCCceEEEECCccc-ccCcHHHHHHHhCcCcHHHHHhhhhH
Confidence 99876532 11222222211 12222 37888 9999999999995 345577788888888888764322
Q ss_pred HHHhhhccCCCcccchhhHHhhcccccccCcEEEecccchhhHHHHHHhhhhcCCCceeEEecccccCCCCC-CccCCCC
Q psy5948 162 AEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGG-KMSSSEE 240 (549)
Q Consensus 162 ~~~~~~~~~~~~~~~~YP~LqAaDil~~~~d~~~gG~DQ~~~~~~~r~l~~~~~~~~~~~l~~plL~~l~G~-KMSKS~~ 240 (549)
.......++.++++|+||+|||||++++++++||||.|||+|++++|++++++|..+++++++|+|++++|. |||||.+
T Consensus 159 k~r~~~~~~is~~ef~YPlLQaaDil~l~~~l~~gG~DQ~~ni~l~rdlarr~~~~~~~~lt~pll~gldG~~KMSKS~~ 238 (432)
T 1h3f_A 159 KKRYEAGIPISLHELLYPFAQAYDSVAIRADVEMGGTDQRFNLLVGREVQRAYGQSPQVCFLMPLLVGLDGREKMSKSLD 238 (432)
T ss_dssp HHHHHTTCCCBGGGGTHHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHHHHHTTCCCCEEEEECCCBCTTSSSBCCGGGT
T ss_pred HHHhhcCCCCCccccchhhHHhhhhhhcCccEEEechHHHHHHHHHHHHHHHhCCCCceEeecccccCCCCccccCcCCC
Confidence 122223356789999999999999999999999999999999999999999999999999999999999995 9999998
Q ss_pred CCeeeccCCHHHHHHHHHhccCCCCCCCcchhhchhhhheecccCCCcceeeeecccCCCCCCCCCHHHHHHHHHcCCCC
Q psy5948 241 DSKIDLLDAPALVKKKLKKAFCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELH 320 (549)
Q Consensus 241 ~s~I~L~Dsp~~i~kKI~~A~td~~~~~~~~v~~~~k~~lf~~~~~~~~~~i~~~~~~g~~~~~~~~eel~~~~~~g~l~ 320 (549)
+ +|||+|+|+++++||+++ .++++..|+++ |+ +.+++++++.+.. +
T Consensus 239 n-~I~L~dsp~~i~~Ki~~~-------~d~~v~~~l~~--ft---------------------~~~~eei~~~~~~---~ 284 (432)
T 1h3f_A 239 N-YIGLTEPPEAMFKKLMRV-------PDPLLPSYFRL--LT---------------------DLEEEEIEALLKA---G 284 (432)
T ss_dssp C-CCBTTSCHHHHHHHHHTS-------CGGGHHHHHHH--HC---------------------CCCHHHHHHHHHH---C
T ss_pred C-eeCCCCCHHHHHHHHhCC-------CccHHHHHHHH--cC---------------------CCCHHHHHHHHhh---C
Confidence 6 899999999999999995 45678877763 21 1457777777765 9
Q ss_pred hHHHHHHHHHHHHHhcC----chhhhhcc
Q psy5948 321 PADLKAAAEFYINRLLE----PIRKKFES 345 (549)
Q Consensus 321 ~~dlK~~Lae~l~~~l~----pir~~~~~ 345 (549)
|+++|++||++|+++++ |+|+||++
T Consensus 285 ~~~~K~~LA~~i~~~l~~~~~pirerr~~ 313 (432)
T 1h3f_A 285 PVPAHRVLARLLTAAYALPQIPPRIDRAF 313 (432)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCCSCCSHHH
T ss_pred hHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 99999999999999999 99999995
No 15
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=100.00 E-value=1.3e-55 Score=469.97 Aligned_cols=293 Identities=16% Similarity=0.195 Sum_probs=240.2
Q ss_pred HHHHHccccc-ccCHHHHHHHHhc-CCceEEEeecCC-CccchhhhHHHHHHHHHHH-cCCcEEEEEeCceeeecCCCCh
Q psy5948 23 KQLITRNLQE-FLGEDRLNVILKE-RDLKIYWGTATT-GRPHIAYFVPMSKIADFLR-AGCEVTILFADLHAYLDNMKAP 98 (549)
Q Consensus 23 ~~li~R~~~e-i~~~~~L~~~l~~-~~~~v~~Gi~PT-G~lHIGn~~~~~~l~~l~~-~G~~v~ilIaD~~a~~~~~~~~ 98 (549)
+++++||+.. +-..++|.+++++ +++++|+||+|| |.||||||++++.+++||+ +|++++++|||+||++++++..
T Consensus 76 ~~l~~RG~i~~~~d~~~l~~~l~~g~~~~vy~G~dPTag~LHLGh~v~~~~l~~lQ~~~g~~~i~lI~D~ta~l~~~~~t 155 (432)
T 2ip1_A 76 HHFLRKGLFFSERDFTKILDLYEQGKPFFLYTGRGPSSDSMHLGHMIPFVFTKWLQEVFDVPLVIELTDDEKFLFKHKLT 155 (432)
T ss_dssp CHHHHTTSEEEEESHHHHHHHHHHTCCCEEEEEECCCSSCCBGGGHHHHHHHHHHHHHHTCCEEEEECHHHHHHHCTTCC
T ss_pred HHHHhCCCcccCCCHHHHHHHHhcCCCeEEEEeecCCCCCccHHHHHHHHHHHHHHHHcCCeEEEEEecccceeCCCCCC
Confidence 5889999732 2244567777765 689999999999 7899999999988899997 8999999999999999875433
Q ss_pred hHHHHHHHHHHHHHHHHHHHccCCCCCeeEEEEccccccccccHHHHHHHHcccCHHHHHHhhHHHhhhccCCCcccchh
Q psy5948 99 WELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLSKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLY 178 (549)
Q Consensus 99 ~~~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~k~~~~~~~~~~~~~~~~~~~Y 178 (549)
....+.+..++ .+.|+|+|+||+++.||+||+|.. ..++..+.++++|++.+++++++ ...++.++++|+|
T Consensus 156 --~e~i~~~~~~~--~~~~lA~GlDp~k~~i~~nSd~~~-~~~~~~~~~v~rm~~~~~~k~r~----~~~~~~s~g~f~Y 226 (432)
T 2ip1_A 156 --INDVKNFAREN--AKDIIAVGFDPKNTFIFSDLQYMG-GAFYETVVRVSRQITGSTAKAVF----GFNDSDCIGKFHF 226 (432)
T ss_dssp --HHHHHHHHHHH--HHHHHTTTCCGGGEEEEEHHHHCS-HHHHHHHHHHHTSCCHHHHHHTT----CCCTTSCHHHHHT
T ss_pred --HHHHHHHHHHH--HHHHHHhCCCCCceEEEeCchhhh-hhHHHHHHHHHhhhcHHHHHHHh----CCCCCCchhhhhH
Confidence 33455555443 357899999999999999999953 45555667899999999887643 1235678999999
Q ss_pred hHHhhccccc-----------ccCcEEEecccchhhHHHHHHhhhhcCCCceeEEecccccCCCC--CCccCCCCCCeee
Q psy5948 179 PGLQALDEEY-----------LKVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAG--GKMSSSEEDSKID 245 (549)
Q Consensus 179 P~LqAaDil~-----------~~~d~~~gG~DQ~~~~~~~r~l~~~~~~~~~~~l~~plL~~l~G--~KMSKS~~~s~I~ 245 (549)
|+|||||+++ +++++||||.|||+|++++|++++++|+.+|..+++|+|++|+| +|||||.++++||
T Consensus 227 PlLQAaDil~l~~d~~~~~~~~~~~lvp~G~DQ~~~i~l~Rdla~r~~~~~p~~l~~~ll~gLdG~~~KMSKS~~nsaI~ 306 (432)
T 2ip1_A 227 ASIQIATAFPSSFPNVLGLPDKTPCLIPCAIDQDPYFRVCRDVADKLKYSKPALLHSRFFPALQGSTTKMSASDDTTAIF 306 (432)
T ss_dssp HHHHHHTTSGGGCTTTTCCCTTCCEEEEEEGGGHHHHHHHHHHHHHHTSCCCEEEEECCCCCTTC--------CGGGCCB
T ss_pred HHHHHHHHHHhccchhhcccCCCceEEEeccCcHHHHHHHHHHHHHhCCCCceeeccccccCCCCCccccCCCCCCCeEe
Confidence 9999999999 57999999999999999999999999987888899999999999 8999999977999
Q ss_pred ccCCHHHHHHHHHh-ccCCC-----------CCCCcchhhchhhhheecccCCCcceeeeecccCCCCCCCCCHHHHHHH
Q psy5948 246 LLDAPALVKKKLKK-AFCEP-----------GNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQV 313 (549)
Q Consensus 246 L~Dsp~~i~kKI~~-A~td~-----------~~~~~~~v~~~~k~~lf~~~~~~~~~~i~~~~~~g~~~~~~~~eel~~~ 313 (549)
|+|+|++|++||++ |||++ ++++.+.+.+|+++ |. . +.+++++|+++
T Consensus 307 L~d~p~~i~~KI~~yA~t~~~~~~~~~~~~g~~pd~~~v~~~l~~--f~-~------------------~~~eieel~~~ 365 (432)
T 2ip1_A 307 MTDTPKQIQKKINKYAFSGGQVSADLHRELGGNPDVDVAYQYLSF--FK-D------------------DDVFLKECYDK 365 (432)
T ss_dssp TTCCHHHHHHHHHHHSCCCSCSSHHHHHHHCCCTTTCHHHHHHHH--HC-C------------------CHHHHHHHHHH
T ss_pred ccCCHHHHHHHhhhhcccCCccchhhccccCCCchHHHHHHHHHH--HC-C------------------CHhHHHHHHHH
Confidence 99999999999999 99987 33445567777763 21 1 13689999999
Q ss_pred HHcCCCChHHHHHHHHHHHHHhcCchhhhhcc
Q psy5948 314 FAKQELHPADLKAAAEFYINRLLEPIRKKFES 345 (549)
Q Consensus 314 ~~~g~l~~~dlK~~Lae~l~~~l~pir~~~~~ 345 (549)
|.+|+++|++||++||+.|+++++|+|++|++
T Consensus 366 ~~~G~~~~~~~K~~La~~i~~~l~~~rer~~~ 397 (432)
T 2ip1_A 366 YKSGELLSGEMKKLCIETLQEFVKAFQERRAQ 397 (432)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999984
No 16
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=100.00 E-value=6.5e-56 Score=465.27 Aligned_cols=289 Identities=14% Similarity=0.162 Sum_probs=241.6
Q ss_pred HHHHHcccccccCHHHHHHHH---h-cCCceEEEeecCCCccchhhhHHHHHHHHHHHc-CCcEEEEEeCceeeecCCCC
Q psy5948 23 KQLITRNLQEFLGEDRLNVIL---K-ERDLKIYWGTATTGRPHIAYFVPMSKIADFLRA-GCEVTILFADLHAYLDNMKA 97 (549)
Q Consensus 23 ~~li~R~~~ei~~~~~L~~~l---~-~~~~~v~~Gi~PTG~lHIGn~~~~~~l~~l~~~-G~~v~ilIaD~~a~~~~~~~ 97 (549)
+.+++||+ |+.+++++.++ + ++++++|+||+|||+||||||++++.++|||++ |+.++|+|+|+|+++.++.+
T Consensus 56 h~~l~RG~--i~~~~d~~~ll~~~~~~~~~~vysG~~PTG~lHLGh~v~~~~~~~lQ~~~g~~v~i~I~D~~a~~~r~~~ 133 (386)
T 3hzr_A 56 HHYLSRGV--FLAEKSLDKFLDDVEAKKPTFIFIQKYPQKEVALEEYITLEFARYLQDAFNIQVIIQILDDIKVLNREAT 133 (386)
T ss_dssp CHHHHTTS--EEEESSHHHHHHHHHTTCCEEEEEEECCCSSCBGGGHHHHHHHHHHHHHHCCEEEEEECHHHHHHTTSCC
T ss_pred hHHHHCcC--ccccccHHHHHHHHhcCCCeEEEeccCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEeCchHHhhcCCCC
Confidence 48899998 77777665554 3 478999999999999999999999888889885 89999999999999876422
Q ss_pred hhHHHHHHHHHHHHHHHHHHHccCCCCCeeEEEEccccccccccHHHHHHHHcccCHHHHHHhhHHHhhhccCCCcccch
Q psy5948 98 PWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLSKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLL 177 (549)
Q Consensus 98 ~~~~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~k~~~~~~~~~~~~~~~~~~~ 177 (549)
..+.+.+..++ .+.|+|+|+||+++.||+||+|+. .++..+.+++++++.++++... ...++.++++|+
T Consensus 134 ---~e~i~~~~~~~--~~~~lA~GlDp~kt~i~~qS~~~~--~~~~~~~~l~r~~t~~~~~~~~----~~~~~~~~g~f~ 202 (386)
T 3hzr_A 134 ---INEASKMSNDL--MKYILAFGFNEDKTFIYTDYQYFG--KMYRTISLVEKATAYNVVQPFF----NFEYSDNIGKLA 202 (386)
T ss_dssp ---HHHHHHHHHHH--HHHHHHTCCCGGGEEEEEHHHHHH--HHHHHHHHHHHHCBHHHHTTTS----CCCSSSBHHHHH
T ss_pred ---HHHHHHHHHHH--HHHHHHcCCCCcceEEEeccHHHH--HHHHHHHHHHhhccHHHHHHHh----CCCCCCchhhHh
Confidence 33455554443 357889999999999999999965 6777889999999998865432 123467899999
Q ss_pred hhHHhhccccc--------cc-CcEEEecccchhhHHHHHHhhhhcCCCceeEEecccccCCCC-CCccCCCCCCeeecc
Q psy5948 178 YPGLQALDEEY--------LK-VDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAG-GKMSSSEEDSKIDLL 247 (549)
Q Consensus 178 YP~LqAaDil~--------~~-~d~~~gG~DQ~~~~~~~r~l~~~~~~~~~~~l~~plL~~l~G-~KMSKS~~~s~I~L~ 247 (549)
||+|||||++. ++ ++++|+|.||++|++++|++++++|+.+|+.+++|+|+||+| +|||||+++|+|||+
T Consensus 203 YP~LQaaD~~~~~~pdil~~~~a~~VpvG~DQ~~hl~l~Rdla~r~n~~~p~~l~~~~l~gLdG~~KMSKSd~~~~I~L~ 282 (386)
T 3hzr_A 203 SPSIMTASMFSQSYSHFFSSPARCLVLDSIKNVQFHSIIDQIATTLNFIQPTVLFHKMVPLLSGVTKFDIPSDHNSILLS 282 (386)
T ss_dssp HHHHHHHTTSGGGCTTTCSSCCEEEEEEEGGGHHHHHHHHHHHHHHTCCCCEEEEECCCCCTTCTTCCCCCCTTTSCBTT
T ss_pred hHHHHHHHHhhhcchHhhCCCCccccccccchHHHHHHHHHHHHHcCCCCceEeecCeeeCCCCCCccCcCCCCCeeecC
Confidence 99999998773 44 899999999999999999999999998889899999999999 599999888899999
Q ss_pred CCHHHHHHHHHh-ccCCCCC-----------CCcchhhchhhhheecccCCCcceeeeecccCCCCCCCCCHHHHHHHHH
Q psy5948 248 DAPALVKKKLKK-AFCEPGN-----------VEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFA 315 (549)
Q Consensus 248 Dsp~~i~kKI~~-A~td~~~-----------~~~~~v~~~~k~~lf~~~~~~~~~~i~~~~~~g~~~~~~~~eel~~~~~ 315 (549)
|+|++|++|||+ |||+++. ++.+++++|+++ |. . ..+++++|+++|.
T Consensus 283 D~p~~i~kKI~k~A~t~g~~Td~~~~~~~g~p~~~~v~~~~~~-----------~~-~---------~~~~~eei~~~~~ 341 (386)
T 3hzr_A 283 DNAKQVERKINKLAFSGGRNTTEEHKKLGGQCDIDVSFQLLNI-----------FS-S---------DNAQVKDVEEKYS 341 (386)
T ss_dssp CCHHHHHHHHHHTSCCCCCSSHHHHHTTCCCGGGCHHHHHHHH-----------HC-S---------CHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhccCCCCCCcccccccCCCCccchHHHHHHH-----------Hc-C---------ChhhHHHHHHHHH
Confidence 999999999999 9998644 344566666552 21 1 1257999999999
Q ss_pred cCCCChHHHHHHHHHHHHHhcCchhhhhcc
Q psy5948 316 KQELHPADLKAAAEFYINRLLEPIRKKFES 345 (549)
Q Consensus 316 ~g~l~~~dlK~~Lae~l~~~l~pir~~~~~ 345 (549)
+|+++|++||++||++|+++|+|+|++|++
T Consensus 342 ~G~l~~g~~K~~lae~i~~~l~pirer~~~ 371 (386)
T 3hzr_A 342 KGELLSGELKKIVSASMKDFIVAYDAKKKP 371 (386)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999984
No 17
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=100.00 E-value=3.9e-56 Score=473.29 Aligned_cols=291 Identities=18% Similarity=0.243 Sum_probs=246.4
Q ss_pred HHHHHcccccccCHHHH---HHHHhc-CCceEEEeecCC-CccchhhhHHHHHHHHHHH-cCCcEEEEEeCceeeecCCC
Q psy5948 23 KQLITRNLQEFLGEDRL---NVILKE-RDLKIYWGTATT-GRPHIAYFVPMSKIADFLR-AGCEVTILFADLHAYLDNMK 96 (549)
Q Consensus 23 ~~li~R~~~ei~~~~~L---~~~l~~-~~~~v~~Gi~PT-G~lHIGn~~~~~~l~~l~~-~G~~v~ilIaD~~a~~~~~~ 96 (549)
++|++||+ |++++++ .+.+++ +++++|+||+|| |.||||||++++.+++||+ +|++++|+|||+|++++|.
T Consensus 82 ~~l~~RG~--i~~~~d~~~l~~~l~~~~~~~vy~G~dPTag~LHLGh~v~~~~~~~lQ~~~G~~~iilIgD~ta~igd~- 158 (437)
T 1r6u_A 82 HHFLRRGI--FFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKD- 158 (437)
T ss_dssp CHHHHHTS--EEEEESHHHHHHHHTTTCCEEEEEEECCCSSCCBHHHHHHHHHHHHHHHHHTCCEEEEECHHHHHHHSS-
T ss_pred HHHHhCCC--ccCCCCHHHHHHHHhcCCCcEEEEcccCCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEecceeeecCC-
Confidence 58899998 7777665 444544 688999999999 7899999999988889997 8999999999999999972
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHccCCCCCeeEEEEccccccc-cccHHHHHHHHcccCHHHHHHhhHHHhhhccCCCccc
Q psy5948 97 APWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLS-KEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSG 175 (549)
Q Consensus 97 ~~~~~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS~~~~~-~~~~~~~~~l~~~~t~~~~k~~~~~~~~~~~~~~~~~ 175 (549)
.+..+.+.+..+. .+.|+|+|+||+++.||.||+|... .+++..++++++|++.+++++++ ...++.++++
T Consensus 159 --lt~e~i~~n~~~~--~~~~lA~GlDp~kt~i~~nSd~~~~l~~~~~l~~~v~rm~~~~~~k~r~----~~~~~~s~ge 230 (437)
T 1r6u_A 159 --LTLDQAYGDAVEN--AKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIF----GFTDSDCIGK 230 (437)
T ss_dssp --CCHHHHHHHHHHH--HHHHHTTTCCGGGEEEEEHHHHGGGCTTHHHHHHHHHHTCBHHHHHHHH----CCCTTSBHHH
T ss_pred --CCHHHHHHHHHHH--HHHHHHhCCCccceEEEechhhhhhHHHHHHHHHHHHhhccHHHHHHHh----CCCCCCchHh
Confidence 2234455555443 3568899999999999999999532 36777788999999999887653 2345678999
Q ss_pred chhhHHhhccccc-----------ccCcEEEecccchhhHHHHHHhhhhcCCCceeEEecccccCCCC--CCccCCCCCC
Q psy5948 176 LLYPGLQALDEEY-----------LKVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAG--GKMSSSEEDS 242 (549)
Q Consensus 176 ~~YP~LqAaDil~-----------~~~d~~~gG~DQ~~~~~~~r~l~~~~~~~~~~~l~~plL~~l~G--~KMSKS~~~s 242 (549)
|+||+|||||+++ ++++++|||.|||+|++++|++++++|+.+|..+++|+|++|+| +|||||.+++
T Consensus 231 f~YPlLQAaDil~l~~d~~~g~~~~~~~lVpvG~DQ~~~i~l~Rdla~r~~~~~P~~l~~pll~gLdG~~~KMSKS~~ns 310 (437)
T 1r6u_A 231 ISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNS 310 (437)
T ss_dssp HHHHHHHHGGGSGGGCHHHHTTCCCCEEEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECCCEETTEEEEECCTTSSSS
T ss_pred HHHHHHHHHHHHHhhcchhcccccCCceEEEeehhhHHHHHHHHHHHHHhCCCCceEeecccccCCCCCccccCCCCCCC
Confidence 9999999999999 67799999999999999999999999988888899999999999 7999999987
Q ss_pred eeeccCCHHHHHHHHHh-ccCCC-----------CCCCcchhhchhhhheecccCCCcceeeeecccCCCCCCCCCHHHH
Q psy5948 243 KIDLLDAPALVKKKLKK-AFCEP-----------GNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSL 310 (549)
Q Consensus 243 ~I~L~Dsp~~i~kKI~~-A~td~-----------~~~~~~~v~~~~k~~lf~~~~~~~~~~i~~~~~~g~~~~~~~~eel 310 (549)
+|||+|+|++|++||++ |||++ ++++.+.+.+|+++ |. .+ .+++++|
T Consensus 311 aI~L~D~p~~I~kKI~~ya~td~~~~~~~~~~~g~~pd~~~v~~~l~~--ft-~~------------------~~eieel 369 (437)
T 1r6u_A 311 SIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTF--FL-ED------------------DDKLEQI 369 (437)
T ss_dssp CCBTTCCHHHHHHHHHHTSCCCBCSSHHHHHHHCBCTTTCHHHHHHHH--HC-CC------------------HHHHHHH
T ss_pred eeeccCCHHHHHHHhhccccCCCccchhhccccCCCccHHHHHHHHHH--Hc-CC------------------HhHHHHH
Confidence 99999999999999999 99998 44455566777762 22 11 2689999
Q ss_pred HHHHHcCCCChHHHHHHHHHHHHHhcCchhhhhcc
Q psy5948 311 EQVFAKQELHPADLKAAAEFYINRLLEPIRKKFES 345 (549)
Q Consensus 311 ~~~~~~g~l~~~dlK~~Lae~l~~~l~pir~~~~~ 345 (549)
+++|.+|+++|++||++||+.|+++++|+|+||++
T Consensus 370 ~~~~~~G~~~~~~~K~~LAe~i~~~l~~~rer~~~ 404 (437)
T 1r6u_A 370 RKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKE 404 (437)
T ss_dssp HHHHHHTSSCSTTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999984
No 18
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=100.00 E-value=1.1e-55 Score=475.87 Aligned_cols=291 Identities=19% Similarity=0.255 Sum_probs=246.5
Q ss_pred HHHHHcccccccCHHHHH---HHHhc-CCceEEEeecCC-CccchhhhHHHHHHHHHHH-cCCcEEEEEeCceeeecCCC
Q psy5948 23 KQLITRNLQEFLGEDRLN---VILKE-RDLKIYWGTATT-GRPHIAYFVPMSKIADFLR-AGCEVTILFADLHAYLDNMK 96 (549)
Q Consensus 23 ~~li~R~~~ei~~~~~L~---~~l~~-~~~~v~~Gi~PT-G~lHIGn~~~~~~l~~l~~-~G~~v~ilIaD~~a~~~~~~ 96 (549)
++|++||+ |+++++++ +.+++ +++++|+||+|| |.||||||++++.+++||+ +|++++|+|||+|++++|.
T Consensus 129 ~~l~~RG~--i~~~~d~~~l~~~l~~~~~~~vy~G~dPTag~LHLGh~v~~~~~~~lQ~~~g~~~iilI~D~~a~igd~- 205 (477)
T 1r6t_A 129 HHFLRRGI--FFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKD- 205 (477)
T ss_dssp CHHHHTTS--EEEEESHHHHHHHHHTTCCEEEEEEECCCTTCCBGGGHHHHHHHHHHHHHHTCCEEEEECHHHHHHHSS-
T ss_pred HHHHhCCC--ccccCCHHHHHHHHhcCCCcEEEEcccCCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEecceeeecCC-
Confidence 58889998 77776654 44444 689999999999 7899999999888888887 8999999999999999862
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHccCCCCCeeEEEEcccccc-ccccHHHHHHHHcccCHHHHHHhhHHHhhhccCCCccc
Q psy5948 97 APWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQL-SKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSG 175 (549)
Q Consensus 97 ~~~~~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS~~~~-~~~~~~~~~~l~~~~t~~~~k~~~~~~~~~~~~~~~~~ 175 (549)
.+..+.+.+..+. .+.|+|+|+||+++.||.||+|.. ..+++..+++++++++.++++.++ +..++.++++
T Consensus 206 --lt~e~i~~n~~~~--~~~~lA~GlDp~k~~i~~nsd~~~~l~~~~~~~~~l~r~~t~~~~k~r~----~~~~~~s~ge 277 (477)
T 1r6t_A 206 --LTLDQAYGDAVEN--AKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIF----GFTDSDCIGK 277 (477)
T ss_dssp --CCHHHHHHHHHHH--HHHHHTTCCCTTSEEEEEHHHHGGGCTTHHHHHHHHHHTCBHHHHHHHH----CCCTTSBHHH
T ss_pred --CCHHHHHHHHHHH--HHHHHHhCCCCCceEEEechhhhcccHHHHHHHHHHHhhccHHHHHHHh----CCCCCCChhh
Confidence 2234455555443 356889999999999999999953 246778889999999999887653 2345678999
Q ss_pred chhhHHhhccccc-----------ccCcEEEecccchhhHHHHHHhhhhcCCCceeEEecccccCCCC--CCccCCCCCC
Q psy5948 176 LLYPGLQALDEEY-----------LKVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAG--GKMSSSEEDS 242 (549)
Q Consensus 176 ~~YP~LqAaDil~-----------~~~d~~~gG~DQ~~~~~~~r~l~~~~~~~~~~~l~~plL~~l~G--~KMSKS~~~s 242 (549)
|+||+|||||+++ ++++++|||.|||+|++++|++++++|+.+|..+++|+|++|+| +|||||.+++
T Consensus 278 f~YPlLQAaDil~l~~d~~~g~~~~~~~~VpvG~DQ~~~i~l~Rdla~r~~~~~p~~l~~pll~gLdG~~~KMSKS~~ns 357 (477)
T 1r6t_A 278 ISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNS 357 (477)
T ss_dssp HHHHHHHHGGGSGGGCHHHHTTCCCCEEEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECCCEETTEEEEECCTTSTTC
T ss_pred hhhHHHHHHHHHHhccchhhccccCCceeEeccccHHHHHHHHHHHHHHhCCCCceeeecccccCCCCCccccCCCCCCC
Confidence 9999999999999 47799999999999999999999999988888899999999999 7999999987
Q ss_pred eeeccCCHHHHHHHHHh-ccCCC-----------CCCCcchhhchhhhheecccCCCcceeeeecccCCCCCCCCCHHHH
Q psy5948 243 KIDLLDAPALVKKKLKK-AFCEP-----------GNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSL 310 (549)
Q Consensus 243 ~I~L~Dsp~~i~kKI~~-A~td~-----------~~~~~~~v~~~~k~~lf~~~~~~~~~~i~~~~~~g~~~~~~~~eel 310 (549)
+|||+|+|++|++||++ |||++ ++++.+.+++|+++ |. .. .+++++|
T Consensus 358 aI~L~d~p~~i~kKi~~yA~t~~~~~~~~~~~~g~~pd~~~v~~~l~~--ft-~~------------------~~eieel 416 (477)
T 1r6t_A 358 SIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTF--FL-ED------------------DDKLEQI 416 (477)
T ss_dssp CCBTTCCHHHHHHHHHHHSCCCSCSSHHHHHHHCCCTTTCHHHHHHHH--HC-CC------------------HHHHHHH
T ss_pred ceeecCCHHHHHHHhccccccCCccchhhccccCCCchHHHHHHHHHH--Hc-CC------------------HHHHHHH
Confidence 99999999999999999 99988 34445566777762 22 11 2589999
Q ss_pred HHHHHcCCCChHHHHHHHHHHHHHhcCchhhhhcc
Q psy5948 311 EQVFAKQELHPADLKAAAEFYINRLLEPIRKKFES 345 (549)
Q Consensus 311 ~~~~~~g~l~~~dlK~~Lae~l~~~l~pir~~~~~ 345 (549)
+++|.+|+++|++||++||+.|+++++|+|+||++
T Consensus 417 ~~~~~~G~~~~~~~K~~Lae~i~~~l~pirer~~~ 451 (477)
T 1r6t_A 417 RKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKE 451 (477)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999984
No 19
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=100.00 E-value=1.4e-55 Score=464.17 Aligned_cols=290 Identities=18% Similarity=0.243 Sum_probs=227.9
Q ss_pred HHHHHcccccccCHHHHHHH---Hhc-CCceEEEeecCCC-ccchhhhHHHHHHHHHHHc-CCcEEEEEeCceeeecCCC
Q psy5948 23 KQLITRNLQEFLGEDRLNVI---LKE-RDLKIYWGTATTG-RPHIAYFVPMSKIADFLRA-GCEVTILFADLHAYLDNMK 96 (549)
Q Consensus 23 ~~li~R~~~ei~~~~~L~~~---l~~-~~~~v~~Gi~PTG-~lHIGn~~~~~~l~~l~~~-G~~v~ilIaD~~a~~~~~~ 96 (549)
++|++||+ |+++++++.+ +++ +++++|+||+||| .||||||++++.+++||++ |+.++++|||+|+.+.+..
T Consensus 48 ~~l~~RG~--i~~~~d~~~l~~~l~~g~~~~vy~G~~PTa~~lHlGh~v~~~~~~~lQ~~~~~~v~i~I~D~~~~~~r~~ 125 (393)
T 3hv0_A 48 HHFFRRNI--FLSHRDFEKILDVYEKGELFYLYTGRGPSSESLHVGHLVPFLFTKYLQDTFKVPLVIQLTDDEKFIFKSN 125 (393)
T ss_dssp CHHHHTTS--EEEEESHHHHHHHHHTTCCCEEEEEECCSSSSCBSTTHHHHHHHHHHHHHHCCCEEEEECHHHHHHHCTT
T ss_pred HHHHhCCC--ccccCCHHHHHHHHhcCCCeEEEeCCCCCCCCccHHHHHHHHHHHHHHHhcCCCeEeeccChHHHhhccC
Confidence 47899998 6666655544 444 5899999999995 6999999999989999988 8899999999999776533
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHccCCCCCeeEEEEccccccccccHHHHHHHHcccCHHHHHHhhHHHhhhccCCCcccc
Q psy5948 97 APWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLSKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGL 176 (549)
Q Consensus 97 ~~~~~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~k~~~~~~~~~~~~~~~~~~ 176 (549)
. +..+.+.+..+. .+.|+|+|+||+++.||.||+|.. .++.+++++++++|.++++... ...++.++++|
T Consensus 126 ~--~~e~i~~~~~~~--~~~~lA~GlDp~kt~i~~ns~~~~--~~~~~~~~l~r~~t~~~~~~~~----~~~~~~s~g~f 195 (393)
T 3hv0_A 126 L--TLEETHNYAYEN--MKDIIACGFDPELTFIFTNLEYIA--ELYPDILRIEKKISCSQIKSIF----GFKDSCNVGKF 195 (393)
T ss_dssp C--CHHHHHHHHHHH--HHHHHTTCCCTTTEEEEEHHHHHH--HHHHHHHHHHHHSBHHHHHHHH----CCCTTSBHHHH
T ss_pred C--CHHHHHHHHHHH--HHHHHHcCCCCcceEEEECCHHHH--HHHHHHHHHHccCCHHHHHHhh----CCCCCCchhhH
Confidence 2 233444444432 367889999999999999999953 5678899999999999877642 12356789999
Q ss_pred hhhHHhhccccc-------c-c---CcEEEecccchhhHHHHHHhhhhcCCCceeEEecccccCCCC--CCccCCCCCCe
Q psy5948 177 LYPGLQALDEEY-------L-K---VDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAG--GKMSSSEEDSK 243 (549)
Q Consensus 177 ~YP~LqAaDil~-------~-~---~d~~~gG~DQ~~~~~~~r~l~~~~~~~~~~~l~~plL~~l~G--~KMSKS~~~s~ 243 (549)
+||+|||||+++ + . .++||||.|||+|++++|++++++|+.+|+.+++|+|++|+| +|||||.++++
T Consensus 196 ~YPlLQaaDil~~~~p~l~~~~~di~~lvp~G~DQ~~~i~l~Rdla~r~~~~~p~~l~~~~l~gLdG~~~KMSKS~~nsa 275 (393)
T 3hv0_A 196 AFPAVQAAPAFSSSFPHIFGGRTDIHCLVPHAIDQDPYFRMVRDVAPRLGYLKPSSIHSIFLPSLQGSQTKMSASVQNSS 275 (393)
T ss_dssp HHHHHHHGGGSGGGCHHHHTTCSCCCEEEEEEGGGHHHHHHHHHHTGGGTCCCCEEEEECCCCC-------------CCC
T ss_pred hHHHHHHHHHHhhhhHHHhcccCCCceecccccchHHHHHHHHHHHHHcCCCCceeeccCcccCCCCCCcCCCCCCCCCe
Confidence 999999999973 2 3 368899999999999999999999999999999999999999 79999999889
Q ss_pred eeccCCHHHHHHHHHh-ccCCCCC-----------CCcchhhchhhhheecccCCCcceeeeecccCCCCCCCCCHHHHH
Q psy5948 244 IDLLDAPALVKKKLKK-AFCEPGN-----------VEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLE 311 (549)
Q Consensus 244 I~L~Dsp~~i~kKI~~-A~td~~~-----------~~~~~v~~~~k~~lf~~~~~~~~~~i~~~~~~g~~~~~~~~eel~ 311 (549)
|||+|+|++|++|||+ |+||+.. ++.+.+++|+. . |. + +.+++++++
T Consensus 276 I~L~D~p~~i~kKI~k~A~td~~~~~~~~~~~~g~p~~~~~~~~~~--------~---~~-~---------~~~~~eei~ 334 (393)
T 3hv0_A 276 IFVNDNEESIRNKIMKYAFSGGQATEEEQRRLGANLDVDVSWQYLR--------F---LM-E---------DDEKLEEIG 334 (393)
T ss_dssp CBTTCCHHHHHHHHHHHSCCCSCSSSCCC---CCCTTTCHHHHHHH--------H---HC-C---------CHHHHHHHH
T ss_pred EeccCCHHHHHHHHHhhccCCCCccccccccCCCCcchhHHHHHHH--------H---Hc-C---------ChhHHHHHH
Confidence 9999999999999999 9998633 23333444433 2 21 1 135799999
Q ss_pred HHHHcCCCChHHHHHHHHHHHHHhcCchhhhhcc
Q psy5948 312 QVFAKQELHPADLKAAAEFYINRLLEPIRKKFES 345 (549)
Q Consensus 312 ~~~~~g~l~~~dlK~~Lae~l~~~l~pir~~~~~ 345 (549)
++|.+|+++|++||++|++.|+++|+|+|+||++
T Consensus 335 ~~y~~G~l~~g~~K~~lae~i~~~l~pirer~~~ 368 (393)
T 3hv0_A 335 KKYSSGEMLSGEIKSILVQELVKLTKNHQKNREA 368 (393)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999984
No 20
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=100.00 E-value=8.7e-56 Score=456.73 Aligned_cols=291 Identities=18% Similarity=0.182 Sum_probs=238.4
Q ss_pred HHHHHHccccc-ccCHHHHHHHHhcCCceEEEeecCCCc-cchhhhHHHHHHHHHHHcCCcEEEEEeCceeeecCCCC--
Q psy5948 22 KKQLITRNLQE-FLGEDRLNVILKERDLKIYWGTATTGR-PHIAYFVPMSKIADFLRAGCEVTILFADLHAYLDNMKA-- 97 (549)
Q Consensus 22 ~~~li~R~~~e-i~~~~~L~~~l~~~~~~v~~Gi~PTG~-lHIGn~~~~~~l~~l~~~G~~v~ilIaD~~a~~~~~~~-- 97 (549)
..+|++|++.+ +..+++|+++++++++++|+||+|||+ ||||||++++.+++||++|++++++|||+||++++|++
T Consensus 7 ~~~l~~Rg~~~~~~~~~~l~~~l~~~~~~vy~G~~PTg~slHlGh~l~l~~~~~lQ~~g~~~~~~i~D~~a~~~dp~g~~ 86 (322)
T 2yxn_A 7 IKQLQERGLVAQVTDEEALAERLAQGPIALVCGFDPTADSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKA 86 (322)
T ss_dssp HHHHHHTTCCSEESSHHHHHHHHHHSCCEEEEEECCSSSSCBHHHHHHHHHHHHHHHTTCEEEEEECTTGGGTCCCTTCS
T ss_pred HHHHHHCCceeeeCCHHHHHHHHcCCCCEEEEeecCCCCcccHHHHHHHHHHHHHHHcCCcEEEEEccceeeecCCCCcc
Confidence 44788999765 555889999998889999999999999 99999999999999999999999999999999998863
Q ss_pred -------hhHHHHHHHHHHHHHHHHHHHccCCCCCeeEEEEccccccccccHHHHHH-HHcccCHHHHHHhhH--HHhh-
Q psy5948 98 -------PWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLSKEYTLDVYR-LSSVITEHDAKKAGA--EVVK- 166 (549)
Q Consensus 98 -------~~~~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~-l~~~~t~~~~k~~~~--~~~~- 166 (549)
+.++.++...+.++ + +.++|+|+||+++.||.||+|..+ ...+++++ ++++++..++.+.-. ....
T Consensus 87 ~~R~~l~~e~i~~n~~~~~~~-~-~~~la~g~dp~k~~i~~qs~w~~~-~~~l~~l~~~~~~~~v~~m~~~~~~k~r~~~ 163 (322)
T 2yxn_A 87 AERKLNTEETVQEWVDKIRKQ-V-APFLDFDCGENSAIAANNYDWFGN-MNVLTFLRDIGKHFSVNQMINKEAVKQRLNR 163 (322)
T ss_dssp SCCCCCCHHHHHHHHHHHHHH-H-GGGSCSSSGGGCCEEEETHHHHTT-CCHHHHHHHTGGGCCHHHHTTCHHHHHHHHC
T ss_pred cccccCCHHHHHHHHHHHHHH-H-HHHHHcCCCccceEEEecchhhcc-CcHHHHHHHHhccccHHHHhhhHHHHHHhcc
Confidence 33333344333443 4 467899999999999999999532 23334454 444445444322111 1111
Q ss_pred hccCCCcccchhhHHhhcccccc----cCcEEEecccchhhHHHHHHhhhhcCCCceeEEecccccCCCCCCccCCCCCC
Q psy5948 167 QVEHPLLSGLLYPGLQALDEEYL----KVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGGKMSSSEEDS 242 (549)
Q Consensus 167 ~~~~~~~~~~~YP~LqAaDil~~----~~d~~~gG~DQ~~~~~~~r~l~~~~~~~~~~~l~~plL~~l~G~KMSKS~~~s 242 (549)
..++.++++|+||+||||||+++ ++++++||.|||+|++++|++++++|..+++++++|+|++++|+|||||.++
T Consensus 164 ~~~~is~g~f~YP~LQaaDil~l~~~~~~~v~~gG~DQ~~~i~l~rdla~r~n~~~~~~l~~pll~gldG~KMSKS~~n- 242 (322)
T 2yxn_A 164 EDQGISFTEFSYNLLQGYDFACLNKQYGVVLCIGGSDQWGNITSGIDLTRRLHQNQVFGLTVPLITKADGTKFGKTEGG- 242 (322)
T ss_dssp TTCCCCHHHHTHHHHHHHHHHHHHHHHCEEEEEECTTCHHHHHHHHHHHHHHHCCCCEEEECCCCBCTTSCBTTEETTE-
T ss_pred CCCCccchhhhHHHHHHHHHHHHhccCCceEEecCchhHHHHHHHHHHHHHhCCCCceeeccCccCCCCcccccCCCCC-
Confidence 12456899999999999999999 9999999999999999999999999988999999999999999999999996
Q ss_pred eeeccC---CHHHHHHHHHhccCCCCCCCcchhhchhhhheecccCCCcceeeeecccCCCCCCCCCHHHHHHHHHcCCC
Q psy5948 243 KIDLLD---APALVKKKLKKAFCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQEL 319 (549)
Q Consensus 243 ~I~L~D---sp~~i~kKI~~A~td~~~~~~~~v~~~~k~~lf~~~~~~~~~~i~~~~~~g~~~~~~~~eel~~~~~~g~l 319 (549)
+|||+| +|+++++||+++ ++++|.+|+++ |+.+. .+++++|+++|.+|.
T Consensus 243 ~I~L~d~~tsp~~~~~ki~~~-------~d~~v~~~l~~--~~~~~------------------~~~i~~l~~~~~~g~- 294 (322)
T 2yxn_A 243 AVWLDPKKTSPYKFYQFWINT-------ADADVYRFLKF--FTFMS------------------IEEINALEEEDKNSG- 294 (322)
T ss_dssp ECBSSTTTSCHHHHHHHHHTC-------CHHHHHHHHHH--HCCCC------------------HHHHHHHHHHHHHHS-
T ss_pred eeeccCCCCCHHHHHHHHhCC-------CcccHHHHHHH--HHcCC------------------HHHHHHHHHHHHcCC-
Confidence 999999 999999999984 67899998873 33222 258999999999876
Q ss_pred ChHHHHHHHHHHHHHhcCchhhhhc
Q psy5948 320 HPADLKAAAEFYINRLLEPIRKKFE 344 (549)
Q Consensus 320 ~~~dlK~~Lae~l~~~l~pir~~~~ 344 (549)
+|+++|++||++|+++++|.++..+
T Consensus 295 ~~~~~K~~La~~i~~~l~~~~~~~~ 319 (322)
T 2yxn_A 295 KAPRAQYVLAEQVTRLVHGEEGLQA 319 (322)
T ss_dssp SCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 9999999999999999999988755
No 21
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=100.00 E-value=1.6e-55 Score=461.70 Aligned_cols=274 Identities=19% Similarity=0.225 Sum_probs=205.0
Q ss_pred CHHHHHHHHh----c-CCce----EEEeecCCCccchhhhHHHHH-HHHHHHcCCcEEEEEeCceeeecCCCChhHHHHH
Q psy5948 35 GEDRLNVILK----E-RDLK----IYWGTATTGRPHIAYFVPMSK-IADFLRAGCEVTILFADLHAYLDNMKAPWELLAL 104 (549)
Q Consensus 35 ~~~~L~~~l~----~-~~~~----v~~Gi~PTG~lHIGn~~~~~~-l~~l~~~G~~v~ilIaD~~a~~~~~~~~~~~~~~ 104 (549)
+|++++.+++ + ++++ ||+||+|||.+|||||++.+. +++|| .|++++|+|||+||+++ +.++ .+.
T Consensus 14 ~hrdld~il~~~e~g~~p~~m~~ri~sG~~PTG~lHLGhyvGal~~~~~LQ-~~~~~~~~IaD~hAlt~-~~~~---~~l 88 (388)
T 3prh_A 14 PLLGLDSTENLYFQGIDPFTMKQTIFSGIQPSGSVTLGNYIGAMKQFVELQ-HDYNSYFCIVDQHAITV-PQDR---LEL 88 (388)
T ss_dssp ---------------------CCEEEEEECCCSCCBHHHHHHTHHHHHHTT-TTSEEEEEECHHHHTTS-CCCH---HHH
T ss_pred ccCCHHHHHHHHHcCCCCcccCCeEEEeeCCCCcchHHHHHHHHHHHHHHH-ccCcEEEEEecceeeec-CCCH---HHH
Confidence 3556665554 3 4666 999999999999999998654 66665 59999999999999997 4444 445
Q ss_pred HHHHHHHHHHHHHHccCCCCCeeEEEEccccccccccHHH------HHHHHcccCHHHHHHhhHHHhhhccCCCcccchh
Q psy5948 105 RTKYYEESIKAMLESIDVPISKLKFVKGTDYQLSKEYTLD------VYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLY 178 (549)
Q Consensus 105 ~~~~~~~~i~~~l~a~Gldp~k~~i~~qS~~~~~~~~~~~------~~~l~~~~t~~~~k~~~~~~~~~~~~~~~~~~~Y 178 (549)
+.+.++. .+.|+|+|+||+|++||+||+|+++.+++|- +.++.++++.++ +. +..++.++|+|+|
T Consensus 89 r~~~~~~--aa~~lA~GlDp~kt~if~qS~v~~~~el~w~l~~~~~~~~L~R~~~fk~-k~------~~~~~~~~g~~~Y 159 (388)
T 3prh_A 89 RKNIRNL--AALYLAVGLDPEKATLFIQSEVPAHAQAGWMMQCVAYIGELERMTQFKD-KS------KGNEAVVSGLLTY 159 (388)
T ss_dssp HHHHHHH--HHHHHHTTCCTTTEEEEEGGGSTHHHHHHHHHHTTSCHHHHHTTC-----------------CCBHHHHSC
T ss_pred HHHHHHH--HHHHHHhCCChhHeEEEecccccchHHHHHHHHhhccHHHHHhhhhHhH-Hh------hccCCCcchhHhh
Confidence 6555553 4789999999999999999999887776542 345555544332 11 1125678999999
Q ss_pred hHHhhcccccccCcEEEecccchhhHHHHHHhhhhcCCC--ceeEEe-------cccccCCC-C-CCccCCCC--CCeee
Q psy5948 179 PGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYA--KRIHFM-------NPMVPGLA-G-GKMSSSEE--DSKID 245 (549)
Q Consensus 179 P~LqAaDil~~~~d~~~gG~DQ~~~~~~~r~l~~~~~~~--~~~~l~-------~plL~~l~-G-~KMSKS~~--~s~I~ 245 (549)
|+||||||+++++|++|||.||++|++++|++++++|+. +++.++ +++|+||+ | +|||||.+ +|+|+
T Consensus 160 PvLQAADIl~~~ad~vPvG~DQ~~hleltRdia~rfn~~y~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~n~I~ 239 (388)
T 3prh_A 160 PPLMAADILLYGTDLVPPGEDQKQHLELTRNLAERFNKKYNDIFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYIT 239 (388)
T ss_dssp HHHHHHHHHTTTCCEECCCSSCHHHHHHHHHHHHHHHHHTCSCCCCCEECCCSCCCCCBCSSCTTSBCCTTCSSTTSCCB
T ss_pred HHHHHHHHHHhCCCEEEechhHHHHHHHHHHHHHHhCcccCCCcccchhhhcccccccccCCCCCCccCCCCCCCCCeee
Confidence 999999999999999999999999999999999999853 444443 35678995 4 69999996 68999
Q ss_pred ccCCHHHHHHHHHhccCCCCC-C-----CcchhhchhhhheecccCCCcceeeeecccCCCCCCCCCHHHHHHHHHcCCC
Q psy5948 246 LLDAPALVKKKLKKAFCEPGN-V-----EDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQEL 319 (549)
Q Consensus 246 L~Dsp~~i~kKI~~A~td~~~-~-----~~~~v~~~~k~~lf~~~~~~~~~~i~~~~~~g~~~~~~~~eel~~~~~~g~l 319 (549)
|+|+|++|++|||+|+||+.. + .++++. ++|.+++. |+ ++++++++++|. |.
T Consensus 240 L~D~p~~I~kKI~ka~TD~~~~~~~~~~~~p~v~-----~l~~i~~~---~~------------~~~~eel~~~y~-g~- 297 (388)
T 3prh_A 240 LLDEPKQLEKKIKSAVTDSEGIVKFDKENKPGVS-----NLLTIYSI---LG------------NTTIEELEAKYE-GK- 297 (388)
T ss_dssp TTCCHHHHHHHHHTCCCCSSCCCCCCTTTCHHHH-----HHHHHHHH---HH------------TCCHHHHHHHTT-TC-
T ss_pred cCCCHHHHHHHHhhccCCCCCcccCCCCCCCCcc-----hHHHHHHh---cC------------CCcHHHHHHHHc-CC-
Confidence 999999999999999999843 2 223343 35566653 32 368999999999 65
Q ss_pred ChHHHHHHHHHHHHHhcCchhhhhc
Q psy5948 320 HPADLKAAAEFYINRLLEPIRKKFE 344 (549)
Q Consensus 320 ~~~dlK~~Lae~l~~~l~pir~~~~ 344 (549)
+|++||++|+++|+++|+|||++|+
T Consensus 298 ~~g~lK~~lae~l~~~l~pirer~~ 322 (388)
T 3prh_A 298 GYGEFKGDLAEVVVNALKPIQDRYY 322 (388)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998
No 22
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=100.00 E-value=3.7e-55 Score=461.19 Aligned_cols=291 Identities=18% Similarity=0.238 Sum_probs=217.7
Q ss_pred HHHHHcccccccCHHHHHHHHh----cCCceEEEeecCCC-ccchhhhHHHHHHHHHHHc-CCcEEEEEeCceeeecCCC
Q psy5948 23 KQLITRNLQEFLGEDRLNVILK----ERDLKIYWGTATTG-RPHIAYFVPMSKIADFLRA-GCEVTILFADLHAYLDNMK 96 (549)
Q Consensus 23 ~~li~R~~~ei~~~~~L~~~l~----~~~~~v~~Gi~PTG-~lHIGn~~~~~~l~~l~~~-G~~v~ilIaD~~a~~~~~~ 96 (549)
+.+++||+ ++++++++.+++ ++++++|+||+||| .||||||++++.++|||++ |+.++|+|||+|+.++++-
T Consensus 52 ~~~~~RG~--~~~~~d~~~~l~~~~~~~~~~vy~G~~PTg~~lHLGh~v~~~~~~~lQ~~~~~~v~i~I~D~~~~l~~~~ 129 (395)
T 3i05_A 52 HHFLRRGI--FFSHRDLNLLLDVYESGQPFYLYTGRGPSSESMHMGHLIPFMFTKWLQDSFRVPLVIQMTDDEKFYFRNI 129 (395)
T ss_dssp CHHHHTTS--EEEEESHHHHHHHHHTTCCEEEEEEECCCSSCCBGGGSHHHHHHHHHHHHHTCCEEEEECHHHHHHHSCC
T ss_pred HHHHhcCC--ccccccHHHHHHHHhcCCCeEEEEeecCCCccchHHHHHHHHHHHHHHHhcCCcEEEEEcchHHHhcCCC
Confidence 57999998 677777766653 47899999999999 5999999999889999987 8999999999998887653
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHccCCCCCeeEEEEccccccccccHHHHHHHHcccCHHHHHHhhHHHhhhccCCCcccc
Q psy5948 97 APWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLSKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGL 176 (549)
Q Consensus 97 ~~~~~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~k~~~~~~~~~~~~~~~~~~ 176 (549)
++ .+.+.+..+. .+.|+|+|+||+++.||.||+|.. .|+.+++++++++|.++++... ...++.++++|
T Consensus 130 ~~---e~i~~~~~~~--~~~~lA~GlDp~kt~i~~ns~~~~--~~~~~v~~l~r~~t~~~~~~~~----~~~~~~s~g~f 198 (395)
T 3i05_A 130 PM---EQVEAMTTEN--IKDIIAMGFDPELTFIFRDFDYMG--CMYRTVAKIERAFTASQVRGCF----GFAMEDNCGRW 198 (395)
T ss_dssp CH---HHHHHHHHHH--HHHHHTTTCCTTSEEEEEHHHHTT--TSHHHHHHHHHHSBHHHHHHHH----CCCTTSBHHHH
T ss_pred CH---HHHHHHHHHH--HHHHHHcCCCCCceEEEEcCHHHH--HHHHHHHHHHhhCCHHHHHHhh----CCCCCCchHHH
Confidence 33 3444444332 357889999999999999999953 6888899999999999877642 12356789999
Q ss_pred hhhHHhhc--------cccccc----CcEEEecccchhhHHHHHHhhhhcCCCceeEEecccccCCCC--CCccCCCCCC
Q psy5948 177 LYPGLQAL--------DEEYLK----VDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAG--GKMSSSEEDS 242 (549)
Q Consensus 177 ~YP~LqAa--------Dil~~~----~d~~~gG~DQ~~~~~~~r~l~~~~~~~~~~~l~~plL~~l~G--~KMSKS~~~s 242 (549)
+||+|||| ||+.++ +|+||||.|||+|++++|++++++|+.+|+.+++|+|++|+| +||||| ++|
T Consensus 199 ~YPlLQaaD~~~~~~~DIll~~~~~~~~lvp~G~DQ~~~i~l~Rdla~r~~~~~p~~l~~~~l~gLdG~~~KMSKS-~~~ 277 (395)
T 3i05_A 199 MFPAIQAAPSFSAAFPHIFPPSMGNVFCLIPQAIDQDPYFRLTRDIAPRLGYLKPAVIHSKFFPGLSGPKGKMSSS-SGT 277 (395)
T ss_dssp HHHHHHHGGGSGGGCTTTSCGGGCCCEEEEEEEGGGHHHHHHHHHTHHHHTCCCCEEEEECCCCCC--------------
T ss_pred HHHHHHHHhhhcccchhhhcccccCCceEEEeccchHHHHHHHHHHHHHcCCCCceeeccccccCCCCCcccCCCC-CCC
Confidence 99999999 566688 999999999999999999999999999999999999999999 799999 667
Q ss_pred eeeccCCHHHHHHHHHh-ccCCCCCC-C-------cchhhchhhhheecccCCCcceeeeecccCCCCCCCCCHHHHHHH
Q psy5948 243 KIDLLDAPALVKKKLKK-AFCEPGNV-E-------DNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQV 313 (549)
Q Consensus 243 ~I~L~Dsp~~i~kKI~~-A~td~~~~-~-------~~~v~~~~k~~lf~~~~~~~~~~i~~~~~~g~~~~~~~~eel~~~ 313 (549)
+|||+|+|++|++|||+ |+||++.+ + ++.+ +++|.+++. |. + +.+++++|+++
T Consensus 278 ~I~L~D~p~~i~kKI~k~A~td~~~~~e~~~~~~g~p~v-----~~~~~~~~~---~~-~---------~~~~~eei~~~ 339 (395)
T 3i05_A 278 AVLLTDTEKMVKDKINKHAFSGGGATKQEHFLLGANVEV-----DVPIQWLSF---FL-E---------DDEELARVKKE 339 (395)
T ss_dssp CCBTTCCHHHHHHHHC----------------------C-----CHHHHHHHH---HC-C---------CSHHHHHHCC-
T ss_pred cccCCCCHHHHHHHHHhhccCCCccchhhcccCCCCcch-----hHHHHHHHH---Hc-C---------ChhhHHHHHHH
Confidence 99999999999999999 99987442 1 1111 134445443 32 1 13689999999
Q ss_pred HHcCCCChHHHHHHHHHHHHHhcCchhhhhcc
Q psy5948 314 FAKQELHPADLKAAAEFYINRLLEPIRKKFES 345 (549)
Q Consensus 314 ~~~g~l~~~dlK~~Lae~l~~~l~pir~~~~~ 345 (549)
|.+|+++|++||+.|++.|+++|+|+|+||++
T Consensus 340 y~~G~l~~g~lK~~lae~i~~~l~pirer~~~ 371 (395)
T 3i05_A 340 YMLGRIMTGEVKKLLINTITAITKTHQEKRKL 371 (395)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999984
No 23
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=100.00 E-value=9.3e-55 Score=451.62 Aligned_cols=269 Identities=20% Similarity=0.222 Sum_probs=214.7
Q ss_pred CCceEEEeecCCCccchhhhHHHH-HHHHHHHcCCcEEEEEeCceeeecCCCChhHHHHHHHHHHHHHHHHHHHccCCCC
Q psy5948 46 RDLKIYWGTATTGRPHIAYFVPMS-KIADFLRAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPI 124 (549)
Q Consensus 46 ~~~~v~~Gi~PTG~lHIGn~~~~~-~l~~l~~~G~~v~ilIaD~~a~~~~~~~~~~~~~~~~~~~~~~i~~~l~a~Gldp 124 (549)
..+++|+|++|||.||||||++.+ .+++||++|++++++|||+||+++++.++.. .+++..++ .+.|+|+|+||
T Consensus 11 ~~~~v~~G~~PTG~lHLGn~~g~l~~~~~lQ~~G~~~~~~IaD~ha~t~~~~dp~~---~~~~~~~~--~~~~lA~Gldp 85 (340)
T 2g36_A 11 HHMRILSGMRPTGKLHIGHLVGALENWVKLQEEGNECFYFVADWHALTTHYDDVSK---LKEYTRDL--VRGFLACGIDP 85 (340)
T ss_dssp -CCEEEEEECCCSSCBHHHHHTHHHHHHHHHHTTCEEEEEECHHHHHHHHTTCCTT---HHHHHHHH--HHHHHHTTCCT
T ss_pred CCCeEEEeeCCCCcccHHhHHHHHHHHHHHHHCCCCEEEEEecceeecCCCCCHHH---HHHHHHHH--HHHHHHhCCCh
Confidence 467999999999999999999765 7888999999999999999999984344433 33333332 35788999999
Q ss_pred CeeEEEEccccccccccHHHHHHHHcccCHHHHHHhhH--H---HhhhccCCCcccchhhHHhhcccccccCcEEEeccc
Q psy5948 125 SKLKFVKGTDYQLSKEYTLDVYRLSSVITEHDAKKAGA--E---VVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFGGVD 199 (549)
Q Consensus 125 ~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~k~~~~--~---~~~~~~~~~~~~~~YP~LqAaDil~~~~d~~~gG~D 199 (549)
+++.||+||+|+.+.++.+ .++..++..++.+... . ..+..++.++++|+||+||||||+++++++||||.|
T Consensus 86 ~k~~if~qS~~~~~~el~~---~l~~~~~v~~l~r~~~~k~~~~r~~~~~~~~~g~f~YPvLQAaDil~~~~~~vpvG~D 162 (340)
T 2g36_A 86 EKSVIFVQSGVKEHAELAL---LFSMIVSVSRLERVPTYKEIKSELNYKDLSTAGFLIYPVLQAADILIYKAEGVPVGED 162 (340)
T ss_dssp TTSEEEEGGGCTHHHHHHH---HHHTTSCHHHHHTCHHHHTC-------CCCSHHHHTHHHHHHHHHHTTTCSEEEECGG
T ss_pred hHeEEEECCchHHHHHHHH---HHHccCCHHHHHHhHHHHhHHHHhccCCCCChHHhhhHHHHHhhHHHhCCCEEEcccc
Confidence 9999999999976544322 2334445555443211 1 112234578999999999999999999999999999
Q ss_pred chhhHHHHHHhhhhcCC-------CceeEE-ecccccCCCCCCccCCCCCCeeeccCCHHHHHHHHHhccCCC-------
Q psy5948 200 QRKIFTLAEKYLPQLGY-------AKRIHF-MNPMVPGLAGGKMSSSEEDSKIDLLDAPALVKKKLKKAFCEP------- 264 (549)
Q Consensus 200 Q~~~~~~~r~l~~~~~~-------~~~~~l-~~plL~~l~G~KMSKS~~~s~I~L~Dsp~~i~kKI~~A~td~------- 264 (549)
|++|++++|++++++|+ .|...+ ++|+|+||+|+|||||.++ +|||+|+|+++++||++|+|||
T Consensus 163 Q~~hi~l~rdia~r~n~~yg~~f~~P~~~~~~~~~l~gldG~KMSKS~~n-~I~L~dsp~~i~~Ki~~a~td~~~~~~~~ 241 (340)
T 2g36_A 163 QVYHIELTREIARRFNYLYDEVFPEPEAILSRVPKLPGTDGRKMSKSYGN-IINLEISEKELEQTILRMMTDPARVRRSD 241 (340)
T ss_dssp GHHHHHHHHHHHHHHHHHSCCCCCCCEEEECCSCCCCCTTSSCCCGGGTC-CCBTTCCHHHHHHHHHTCCCCTTCSSTTS
T ss_pred hHHHHHHHHHHHHHhhhhcccccCCchhhhccccccCCCCccccCCCCCC-eEeeeCCHHHHHHHHHhCCCCcccccccC
Confidence 99999999999998862 232223 5899999999999999995 8999999999999999999996
Q ss_pred -CCCCcchhhchhhhheecccCCCcceeeeecccCCCCCCCCCHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCchhhhh
Q psy5948 265 -GNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPADLKAAAEFYINRLLEPIRKKF 343 (549)
Q Consensus 265 -~~~~~~~v~~~~k~~lf~~~~~~~~~~i~~~~~~g~~~~~~~~eel~~~~~~g~l~~~dlK~~Lae~l~~~l~pir~~~ 343 (549)
++++.|++++|++++.+ ..+++++|+++|.+|++++++||++||++|+++++|+|++|
T Consensus 242 ~~~p~~~~v~~~~~~f~~---------------------~~~~ieel~~~~~~g~~~~~~~K~~La~~i~~~l~pire~~ 300 (340)
T 2g36_A 242 PGNPENCPVWKYHQAFDI---------------------SEEESKWVWEGCTTASIGCVDCKKLLLKNMKRKLAPIWENF 300 (340)
T ss_dssp CCCGGGCHHHHHHHHTTC---------------------CHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCchhHHHHHHHHHCC---------------------CHhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677788887773110 12467999999999999999999999999999999999998
Q ss_pred c
Q psy5948 344 E 344 (549)
Q Consensus 344 ~ 344 (549)
+
T Consensus 301 ~ 301 (340)
T 2g36_A 301 R 301 (340)
T ss_dssp H
T ss_pred H
Confidence 7
No 24
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=100.00 E-value=2.1e-54 Score=459.31 Aligned_cols=300 Identities=17% Similarity=0.158 Sum_probs=247.9
Q ss_pred HHHHHccccc-ccCHHHHHHHHhcCCceEEEeecCCCc-cchhhhHHHHHHHHHHHcCCcEEEEEeCceeeecCCCCh--
Q psy5948 23 KQLITRNLQE-FLGEDRLNVILKERDLKIYWGTATTGR-PHIAYFVPMSKIADFLRAGCEVTILFADLHAYLDNMKAP-- 98 (549)
Q Consensus 23 ~~li~R~~~e-i~~~~~L~~~l~~~~~~v~~Gi~PTG~-lHIGn~~~~~~l~~l~~~G~~v~ilIaD~~a~~~~~~~~-- 98 (549)
-+|++||+.+ +..+++|+++|+++++++|+||+|||+ |||||+++++.+++||++|++++++|||+||+++||+ +
T Consensus 7 ~~L~~RG~~~~~~~~e~L~~~L~~~~~~iy~G~dPTg~sLHLGhlv~l~~l~~lQ~~G~~~i~lIgD~ta~igdps-k~~ 85 (432)
T 2jan_A 7 DELSWRGLIAQSTDLDTLAAEAQRGPMTVYAGFDPTAPSLHAGHLVPLLTLRRFQRAGHRPIVLAGGATGMIGDPR-DVG 85 (432)
T ss_dssp HHHHHHTCCSEESCHHHHHHHHHHSCCEEEEEECCSSSSCBGGGHHHHHHHHHHHHTTCEEEEEECHHHHHHHCCC-CTT
T ss_pred HHHHHcCchhhcCCHHHHHHHHcCCCCEEEEeeCCCCCCcCHHHHHHHHHHHHHHHCCCcEEEEEcCcEEEccCCc-ccc
Confidence 4788999765 888999999999899999999999997 9999999999999999999999999999999999874 2
Q ss_pred ----hHHHHHHH---HHHHHHHHHHHHccCCCCCeeEEEEccccccccccHHHHHH-HHcccCHHHHHHhhHHHhh-hcc
Q psy5948 99 ----WELLALRT---KYYEESIKAMLESIDVPISKLKFVKGTDYQLSKEYTLDVYR-LSSVITEHDAKKAGAEVVK-QVE 169 (549)
Q Consensus 99 ----~~~~~~~~---~~~~~~i~~~l~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~-l~~~~t~~~~k~~~~~~~~-~~~ 169 (549)
.+..+.+. .+.++ + +.++++|+||+++.||+||+|..+. ..+++++ ++++++.+++.+......+ ..+
T Consensus 86 ~R~~~~~e~i~~n~~~~~~~-~-~~~La~G~dp~k~~i~~nsdw~~~~-~~l~~lr~l~~~~tv~~m~~~~~~k~r~~~~ 162 (432)
T 2jan_A 86 ERSLNEADTVAEWTERIRGQ-L-ERFVDFDDSPMGAIVENNLEWTGSL-SAIEFLRDIGKHFSVNVMLARDTIRRRLAGE 162 (432)
T ss_dssp TSGGGHHHHHHHHHHHHHHH-H-HHHSCCSSSTTCCEEEETHHHHSSC-BHHHHHHHTGGGCBHHHHHHSHHHHHHTSTT
T ss_pred cccCCCHHHHHHHHHHHHHH-H-HHHHhcCCCCCceEEEECchhcccC-cHHHHHHHHhccCcHHHHhcchHHhhhhcCC
Confidence 23333333 33333 3 4678999999999999999995433 3555666 7788888887664221111 134
Q ss_pred CCCcccchhhHHhhcccccc----cCcEEEecccchhhHHHHHHhhhhcCCCceeEEecccccCCCCCCccCCCCCCeee
Q psy5948 170 HPLLSGLLYPGLQALDEEYL----KVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGGKMSSSEEDSKID 245 (549)
Q Consensus 170 ~~~~~~~~YP~LqAaDil~~----~~d~~~gG~DQ~~~~~~~r~l~~~~~~~~~~~l~~plL~~l~G~KMSKS~~~s~I~ 245 (549)
+.++++|+||+||||||+++ +|++||||.|||+|++++|++++++|..++++++.|+|++++|+|||||.++++||
T Consensus 163 ~is~~ef~YPlLQaaDil~l~~~~~~~i~~gG~DQ~~ni~lgrdlarr~~~~~~~~l~~plL~~ldG~KMSKS~~nsaI~ 242 (432)
T 2jan_A 163 GISYTEFSYLLLQANDYVELHRRHGCTLQIGGADQWGNIIAGVRLVRQKLGATVHALTVPLVTAADGTKFGKSTGGGSLW 242 (432)
T ss_dssp CCBHHHHHHHHHHHHHHHHHHHHHCCCEEEECSTTHHHHHHHHHHHHHHHCCCCEEEECCCCBCTTSCBTTBCSSSCBCB
T ss_pred CcchHHHHHHHHHHHHHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhCCCCccccccccccCCCcCcCCCCCCCCeEE
Confidence 67899999999999999999 99999999999999999999999999999999999999999999999999977999
Q ss_pred ccC---CHHHHHHHHHhccCCCCCCCcchhhchhhhheecccCCCcceeeeecccCCCCCCCCCHHHHHHHHHcCCCChH
Q psy5948 246 LLD---APALVKKKLKKAFCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPA 322 (549)
Q Consensus 246 L~D---sp~~i~kKI~~A~td~~~~~~~~v~~~~k~~lf~~~~~~~~~~i~~~~~~g~~~~~~~~eel~~~~~~g~l~~~ 322 (549)
|+| +|+++++||++ +.|+.|.+|++ +|+.+. .+++++|+++|.+|. +++
T Consensus 243 L~d~~tsp~~i~qki~~-------~~D~~v~~~l~--l~t~~~------------------~~ei~~l~~~~~~g~-~~~ 294 (432)
T 2jan_A 243 LDPQMTSPYAWYQYFVN-------TADADVIRYLR--WFTFLS------------------ADELAELEQATAQRP-QQR 294 (432)
T ss_dssp SSTTTSCHHHHHHHHHT-------CCHHHHHHHHH--HHSCCC------------------HHHHHHHHHHHHHCG-GGC
T ss_pred ccCCCCCHHHHHHHHhc-------CCchhHHHHHH--HHHcCC------------------hHHHHHHHHHHhhcc-CHH
Confidence 999 99999999998 35788998887 343222 258999999999876 999
Q ss_pred HHHHHHHHHHHHhcCchhhhhcchHHHHHhhhcCC
Q psy5948 323 DLKAAAEFYINRLLEPIRKKFESKELKDLTSKAYP 357 (549)
Q Consensus 323 dlK~~Lae~l~~~l~pir~~~~~~e~~~~~~~~~~ 357 (549)
++|+.||++|+++++...+..+ +++...+.|.
T Consensus 295 ~~K~~LA~~v~~~~hg~~~~~~---a~~~~~~lf~ 326 (432)
T 2jan_A 295 AAQRRLASELTVLVHGEAATAA---VEHASRALFG 326 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHcCHHHHHH---HHHHHHHHhc
Confidence 9999999999999998766544 3344444565
No 25
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=100.00 E-value=2.5e-54 Score=458.93 Aligned_cols=292 Identities=19% Similarity=0.268 Sum_probs=239.3
Q ss_pred HHHHHcccccccCHHHHHHH---Hhc-CCceEEEeecCC-CccchhhhHHHHHHHHHHHc-CCcEEEEEeCceeeecCCC
Q psy5948 23 KQLITRNLQEFLGEDRLNVI---LKE-RDLKIYWGTATT-GRPHIAYFVPMSKIADFLRA-GCEVTILFADLHAYLDNMK 96 (549)
Q Consensus 23 ~~li~R~~~ei~~~~~L~~~---l~~-~~~~v~~Gi~PT-G~lHIGn~~~~~~l~~l~~~-G~~v~ilIaD~~a~~~~~~ 96 (549)
+.+++||+ ++++++++.+ +++ +++++|+||+|| |.||||||++++.++|||++ |+.++|+|||+|+++.+..
T Consensus 65 h~~l~RG~--i~~~~dl~~ll~~l~~g~p~~vytG~dPTagsLHLGH~v~~~~l~~lQ~~~g~~v~I~IgD~~a~~~r~~ 142 (451)
T 3foc_A 65 HPMLRRGL--FYAHRDFEEFLSYYEKGHPIYIYTGRGPSSGALHLGHLLPFIFTKYLQDAFKCYVVIQITDDEKFLRNRS 142 (451)
T ss_dssp CHHHHTTS--EEEEESHHHHHHHHHTTCCEEEEEEECCCSSCCBHHHHHHHHHHHHHHHHHTCEEEEEECHHHHHHHCTT
T ss_pred HHHHhCCC--ccccccHHHHHHHHhcCCCeEEEecCCCCCCCccHHHHHHHHHHHHHHHccCceEEEEeeCcHHhhcccC
Confidence 38899998 5666655544 444 789999999999 67999999999889999988 8899999999999987533
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHccCCCCCeeEEEEccccccccccHHHHHHHHcccCHHHHHHhhHHHhhhccCCCcccc
Q psy5948 97 APWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLSKEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGL 176 (549)
Q Consensus 97 ~~~~~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~k~~~~~~~~~~~~~~~~~~ 176 (549)
.. ..+.+.+..+. .+.|+|+|+||+++.||+||+|.....++..+.++++++|++++.+... ..++.++++|
T Consensus 143 lt--~E~I~~n~~~~--~~~~lA~GlDpekt~i~~nSd~~~~~~~~~~l~~L~r~~Tv~~m~~~~~----f~~~is~gef 214 (451)
T 3foc_A 143 LS--YAEVDSYTREN--IKDIIACGFDPDKTFIFINSQYLSLKNRYRFSCLVDRMLPISQLRASFG----FSNDANVGYA 214 (451)
T ss_dssp CC--HHHHHHHHHHH--HHHHHTTTCCGGGEEEEEHHHHTTSTTHHHHHHHHHHTCCHHHHHHHHC----CCSSSCHHHH
T ss_pred CC--HHHHHHHHHHH--HHHHHHcCCCCCceEEEeCchhhcchhHHHHHHHHHhhCCHHHHHhhcc----cCCCCchHHH
Confidence 22 23344443332 3578899999999999999999654566677889999999999876431 2356789999
Q ss_pred hhhHHhhcccccccC------------------------------------------c-----------------EEEec
Q psy5948 177 LYPGLQALDEEYLKV------------------------------------------D-----------------AQFGG 197 (549)
Q Consensus 177 ~YP~LqAaDil~~~~------------------------------------------d-----------------~~~gG 197 (549)
+||+|||||++++.+ + ++|||
T Consensus 215 ~YPlLQAaDil~~~~d~~~~~~vp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~VPvG 294 (451)
T 3foc_A 215 AFPPKQMLPVYSTYFDGLPFTRVPLPVGTGNEDAADAVSTKKASKKTPKKDAVLSPVHVVEELFPDSKRYQKAMCLIASG 294 (451)
T ss_dssp TCHHHHHGGGSGGGGTTSGGGCCBCC-------------------------CCCCHHHHHHHHCGGGGGBCCCEEEEEEC
T ss_pred hhHHHHHHHHHHhhcCCCCccccccccccccchhhhhhhhhhccccccchhhhhhhcccchhhcccccccccccceeeee
Confidence 999999999985544 2 89999
Q ss_pred ccchhhHHHHHHhhhhcCCCceeEEecccccCCCCC--CccCCCCCCeeeccCCHHHHHHHHHh-ccCCCCC--------
Q psy5948 198 VDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGG--KMSSSEEDSKIDLLDAPALVKKKLKK-AFCEPGN-------- 266 (549)
Q Consensus 198 ~DQ~~~~~~~r~l~~~~~~~~~~~l~~plL~~l~G~--KMSKS~~~s~I~L~Dsp~~i~kKI~~-A~td~~~-------- 266 (549)
.||++|++++|++++++|+.+|..+++|+|+||+|. |||||.++++|+|+|+|++|++|||+ |+||+..
T Consensus 295 ~DQ~~hlel~Rdia~rfn~~~p~~~~~~~l~gLdG~~~KMSKS~~ns~I~l~D~p~~I~kKI~k~A~Td~~~~~~~~~~~ 374 (451)
T 3foc_A 295 IEQDPYFRLARDLAPRMGHPKNAYLLGKFLPGLQGSGTKMSASDPNSAIYLTDTPAQIKNKINRYAFSGGRDTEEEHRAF 374 (451)
T ss_dssp TTTHHHHHHHHHHTTTTTSCCCEEEEECCCCBTTBTTCCCCTTCGGGSCBTTCCHHHHHHHHHHHSCCCSCSSHHHHHTT
T ss_pred cchHHHHHHHHHHHHHhCCCCCeeecCCcccCCCCCCCccCCCCCCCeeeecCCHHHHHHHHhhhccCCCCccchhcccC
Confidence 999999999999999999988888999999999994 99999998899999999999999999 9998643
Q ss_pred ---CCcchhhchhhhheecccCCCcceeeeecccCCCCCCCCCHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCchhhhh
Q psy5948 267 ---VEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPADLKAAAEFYINRLLEPIRKKF 343 (549)
Q Consensus 267 ---~~~~~v~~~~k~~lf~~~~~~~~~~i~~~~~~g~~~~~~~~eel~~~~~~g~l~~~dlK~~Lae~l~~~l~pir~~~ 343 (549)
++.|.+++ +++. |. . +.+++++|+++|.+|+++|++||+.|++.|+++|+|+|+||
T Consensus 375 ~g~p~~~~v~~--------~l~~---f~-~---------~~~~~eel~~~y~~G~l~~g~lK~~Lae~i~~~l~pirer~ 433 (451)
T 3foc_A 375 GADLSVDVSVR--------YLEV---FM-K---------DDAELEKLKADYKTGKLLTGEVKATLIGILQGLIKEHAERR 433 (451)
T ss_dssp CCCTTTCHHHH--------HHHH---HC-C---------CHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcchhhHHH--------HHHH---Hc-C---------CHhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333344 4432 32 0 13579999999999999999999999999999999999999
Q ss_pred cc
Q psy5948 344 ES 345 (549)
Q Consensus 344 ~~ 345 (549)
++
T Consensus 434 ~~ 435 (451)
T 3foc_A 434 DK 435 (451)
T ss_dssp HT
T ss_pred HH
Confidence 84
No 26
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=100.00 E-value=3e-54 Score=457.45 Aligned_cols=290 Identities=19% Similarity=0.211 Sum_probs=239.9
Q ss_pred HHHHHccccc-ccCHHHHHHHHhcCCceEEEeecCCCc-cchhhhHHHHHHHHHHHcCCcEEEEEeCceeeecCCCC---
Q psy5948 23 KQLITRNLQE-FLGEDRLNVILKERDLKIYWGTATTGR-PHIAYFVPMSKIADFLRAGCEVTILFADLHAYLDNMKA--- 97 (549)
Q Consensus 23 ~~li~R~~~e-i~~~~~L~~~l~~~~~~v~~Gi~PTG~-lHIGn~~~~~~l~~l~~~G~~v~ilIaD~~a~~~~~~~--- 97 (549)
-+|++|++.+ +..+++|+++|+++++++|+||+|||+ ||||||++++.+++||++||+++++|||+||+++||++
T Consensus 5 ~~L~~Rg~~~~~~~~~~L~~~L~~~~~~iy~G~dPTg~sLHlGh~v~l~~l~~lQ~~G~~~i~lIgd~ta~igdpsgk~~ 84 (419)
T 2ts1_A 5 AELQWRGLVNQTTDEDGLRKLLNEERVTLYCGFDPTADSLHIGHLATILTMRRFQQAGHRPIALVGGATGLIGDPSGKKS 84 (419)
T ss_dssp HHHHHHTCCSEESCHHHHHHHHHHSCCEEEEEECCSSSSCBGGGHHHHHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSS
T ss_pred HHHHHcCchhhcCCHHHHHHHHcCCCCEEEEeeCCCCCCccHHHHHHHHHHHHHHHCCCcEEEEEcCceeEecCCCCccc
Confidence 3788999765 888999999999899999999999999 99999999999999999999999999999999999873
Q ss_pred ------hhHHHHHHHHHHHHHHHHHHHccCCCCCeeEEEEccccccccccHHHHHH-HHcccCHHHHHHhhHHHhhhccC
Q psy5948 98 ------PWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQLSKEYTLDVYR-LSSVITEHDAKKAGAEVVKQVEH 170 (549)
Q Consensus 98 ------~~~~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~-l~~~~t~~~~k~~~~~~~~~~~~ 170 (549)
+.++.++...+.++ + +.++++|+||+++.+|.||+|..+..+ .++++ ++++++.+++...-....+..++
T Consensus 85 ~R~~l~~e~i~~n~~~~~~q-~-~~~L~~g~dp~k~~i~~ns~w~~~~~~-~~~l~~~~~~~tv~rm~~~~~~k~r~~~~ 161 (419)
T 2ts1_A 85 ERTLNAKETVEAWSARIKEQ-L-GRFLDFEADGNPAKIKNNYDWIGPLDV-ITFLRDVGKHFSVNYMMAKESVQSRIETG 161 (419)
T ss_dssp CCCCCCHHHHHHHHHHHHHH-H-TTSSCSSCSSSCCEEEETHHHHTTCCH-HHHHHHTGGGCCHHHHHTSHHHHTTTTTC
T ss_pred cccCCCHHHHHHHHHHHHHH-H-HHHHhcCCCCCceEEEEchhhhhhchH-HHHHHHHhcccCHHHHhccchhhhccCCC
Confidence 33444444444343 2 346789999999999999999543322 33344 77888888876542211112346
Q ss_pred CCcccchhhHHhhcccccc----cCcEEEecccchhhHHHHHHhhhhc-CCCceeEEecccccCCCCCCccCCCCCCeee
Q psy5948 171 PLLSGLLYPGLQALDEEYL----KVDAQFGGVDQRKIFTLAEKYLPQL-GYAKRIHFMNPMVPGLAGGKMSSSEEDSKID 245 (549)
Q Consensus 171 ~~~~~~~YP~LqAaDil~~----~~d~~~gG~DQ~~~~~~~r~l~~~~-~~~~~~~l~~plL~~l~G~KMSKS~~~s~I~ 245 (549)
.++++|+||+||||||+++ +|++|+||.|||+|++++|++++++ +..+++++++|+|++++|+|||||.++ +||
T Consensus 162 is~~ef~YPlLQaaDil~l~~~~~~~i~~gG~DQ~~ni~lgrdlarr~~~~~~~~~lt~pll~~ldG~KMSKS~~n-aI~ 240 (419)
T 2ts1_A 162 ISFTEFSYMMLQAYDFLRLYETEGCRLQIGGSDQWGNITAGLELIRKTKGEARAFGLTIPLVTKADGTKFGKTESG-TIW 240 (419)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCEEEEEEEGGGHHHHHHHHHHHHHHHC--CCEEEEECCCCCTTSCCTTCCSSC-CCB
T ss_pred cchHHHHHHHHHHHHHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhcCCCCeeecccccccCCCcccccCCCCC-eEe
Confidence 7899999999999999999 9999999999999999999999999 988999999999999999999999985 999
Q ss_pred ccC---CHHHHHHHHHhccCCCCCCCcchhhchhhhheecccCCCcceeeeecccCCCCCCCCCHHHHHHHHHcCCCChH
Q psy5948 246 LLD---APALVKKKLKKAFCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPA 322 (549)
Q Consensus 246 L~D---sp~~i~kKI~~A~td~~~~~~~~v~~~~k~~lf~~~~~~~~~~i~~~~~~g~~~~~~~~eel~~~~~~g~l~~~ 322 (549)
|+| +|+++++||++ +.|+.|.+|++ +|+.+. .+++++|+++|.+|. +++
T Consensus 241 L~d~~tsp~~i~qki~~-------~~D~~v~~~l~--l~t~~~------------------~~ei~~l~~~~~~g~-~~~ 292 (419)
T 2ts1_A 241 LDKEKTSPYEFYQFWIN-------TDDRDVIRYLK--YFTFLS------------------KEEIEALEQELREAP-EKR 292 (419)
T ss_dssp SSTTTSCHHHHHHHHHT-------CCHHHHHHHHH--HHCCCC------------------HHHHHHHHHHHHHCT-TSC
T ss_pred cCCCCCCHHHHHHHHhc-------CCchhHHHHHH--HHHcCC------------------HHHHHHHHHHHHccC-CHH
Confidence 999 99999999998 46788999888 343322 258999999999876 999
Q ss_pred HHHHHHHHHHHHhcCchhhhhc
Q psy5948 323 DLKAAAEFYINRLLEPIRKKFE 344 (549)
Q Consensus 323 dlK~~Lae~l~~~l~pir~~~~ 344 (549)
++|+.||++|+++++...+..+
T Consensus 293 ~~K~~LA~~v~~~~hg~~~~~~ 314 (419)
T 2ts1_A 293 AAQKTLAEEVTKLVHGEEALRQ 314 (419)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCHHHHHH
Confidence 9999999999999998666444
No 27
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=100.00 E-value=2.5e-55 Score=454.65 Aligned_cols=264 Identities=19% Similarity=0.206 Sum_probs=211.5
Q ss_pred CceEEEeecCCCccchhhhHHHH-HHHHHHHcCCcEEEEEeCceeeecCCCChhHHHHHHHHHHHHHHHHHHHccCCCCC
Q psy5948 47 DLKIYWGTATTGRPHIAYFVPMS-KIADFLRAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPIS 125 (549)
Q Consensus 47 ~~~v~~Gi~PTG~lHIGn~~~~~-~l~~l~~~G~~v~ilIaD~~a~~~~~~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~ 125 (549)
..+||+||+|||.+|||||++.+ .+++||+ +++++|+|||+||+++ +.++ .+.+.+..+ +.+.|+|+|+||+
T Consensus 6 ~~~v~sG~~PTG~lHLGhy~g~l~~~~~lQ~-~~~~~~~iaD~ha~~~-~~~~---~~~~~~~~~--~~~~~lA~GlDp~ 78 (341)
T 3sz3_A 6 KPIVLSGVQPSGELSIGNYLGALRQWQQMQD-DYDCQYCVVDLHAITV-RQDP---QALHEATLD--ALAICLAVGVDPK 78 (341)
T ss_dssp SCEEEEEECSSSCCBHHHHHHTGGGHHHHHH-HSEEEEEECHHHHTTS-CCCH---HHHHHHHHH--HHHHHHHTTCCTT
T ss_pred CCEEEeCcCCCCcccHHHHHHHHHHHHHHHh-cCeEEEEEecceeEcC-CCCH---HHHHHHHHH--HHHHHHHcCCChh
Confidence 35899999999999999999864 4667776 6999999999999997 4544 345555444 2468899999999
Q ss_pred eeEEEEccccccccccHHH------HHHHHcccCHHHHHHhhHHHhhhccCCCcccchhhHHhhcccccccCcEEEeccc
Q psy5948 126 KLKFVKGTDYQLSKEYTLD------VYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFGGVD 199 (549)
Q Consensus 126 k~~i~~qS~~~~~~~~~~~------~~~l~~~~t~~~~k~~~~~~~~~~~~~~~~~~~YP~LqAaDil~~~~d~~~gG~D 199 (549)
|++||+||+|++|.++.|. +.++.++++.++... +..++.++|+|+||+||||||+++++|++|||.|
T Consensus 79 k~~i~~qS~v~~~~el~~~l~~~~~~~~l~R~~~~k~~~~------~~~~~~~~g~~~YP~lQaaDil~~~ad~vpvG~D 152 (341)
T 3sz3_A 79 KSTLFVQSHVPEHAQLGWVLNCYTQMGELSRMTQFKDKSA------RYANDVNAGLFGYPVLMAADILLYGAHQVPVGSD 152 (341)
T ss_dssp TSEEEEGGGCTHHHHHHHHHHTTSCHHHHHTCHHHHHHHH------HHGGGCCHHHHHHHHHHHHHHHTTTCSEECCCGG
T ss_pred hcEEEeccchhhhHHHHHHHHhhccHHHHHHHHHHHHHHh------hccCCCChhhHHhHHHHHHHHHHcCCCEEEeccc
Confidence 9999999999877775543 344555544433221 1234678999999999999999999999999999
Q ss_pred chhhHHHHHHhhhhcCC--C---cee-----EEe--cccccCCC-C-CCccCCCC--CCeeeccCCHHHHHHHHHhccCC
Q psy5948 200 QRKIFTLAEKYLPQLGY--A---KRI-----HFM--NPMVPGLA-G-GKMSSSEE--DSKIDLLDAPALVKKKLKKAFCE 263 (549)
Q Consensus 200 Q~~~~~~~r~l~~~~~~--~---~~~-----~l~--~plL~~l~-G-~KMSKS~~--~s~I~L~Dsp~~i~kKI~~A~td 263 (549)
|++|++++|++++++|. . +++ .++ +++|+||+ | +|||||.+ +|+|||+|+|++|++|||+|+||
T Consensus 153 Q~~hlel~Rdia~rfn~~yg~~~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~p~~i~kKI~~a~Td 232 (341)
T 3sz3_A 153 QKQHLELARDIATRFNNIYSPEQPIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLEDPKSIIKKINKAQTD 232 (341)
T ss_dssp GHHHHHHHHHHHHHHHHHHCSSSCSSCCCEECCCSCCCCCEETTEEEEECCTTCSCGGGCCBTTCCHHHHHHHHHTCCCC
T ss_pred hHHHHHHHHHHHHHhchhccCCCcccccChhhhccCcccccCCCCCCCccCCCCCCCCCeeecCCCHHHHHHHhhhccCC
Confidence 99999999999999872 2 222 223 57889994 6 69999997 68999999999999999999999
Q ss_pred CCC--------CCcchhhchhhhheecccCCCcceeeeecccCCCCCCCCCHHHHHHHHHcCCCChHHHHHHHHHHHHHh
Q psy5948 264 PGN--------VEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPADLKAAAEFYINRL 335 (549)
Q Consensus 264 ~~~--------~~~~~v~~~~k~~lf~~~~~~~~~~i~~~~~~g~~~~~~~~eel~~~~~~g~l~~~dlK~~Lae~l~~~ 335 (549)
+.+ ..++++ +++|++|+. |+ ++++++++++|. |+++|++||+.|++.|+++
T Consensus 233 ~~~~~~~~~~~~~~p~v-----~~l~~~~~~---~~------------~~~~e~i~~~~~-g~~~~g~~K~~lae~i~~~ 291 (341)
T 3sz3_A 233 AETPPRIAYDVENKAGI-----ANLMGLYSA---AT------------GKTFAEIEAQYA-GVEMYGPFKKDVGEAVVAM 291 (341)
T ss_dssp CCSSCCCCCCTTTCHHH-----HHHHHHHHH---HH------------CCCHHHHHHHTT-TCCCSHHHHHHHHHHHHHH
T ss_pred CCCCcccccCCCCCcch-----hHHHHHHHH---cC------------CccHHHHHHHHc-cCCCHHHHHHHHHHHHHHH
Confidence 865 122333 346777764 42 368999999998 6789999999999999999
Q ss_pred cCchhhhhc
Q psy5948 336 LEPIRKKFE 344 (549)
Q Consensus 336 l~pir~~~~ 344 (549)
|+|+|+||+
T Consensus 292 l~pirer~~ 300 (341)
T 3sz3_A 292 LEPVQAEYQ 300 (341)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999998
No 28
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=100.00 E-value=2.7e-54 Score=449.96 Aligned_cols=269 Identities=22% Similarity=0.242 Sum_probs=215.2
Q ss_pred cCCceEEEeecCCCccchhhhHHHH-HHHHHHHcCCcEEEEEeCceeeecCCCChhHHHHHHHHHHHHHHHHHHHccCCC
Q psy5948 45 ERDLKIYWGTATTGRPHIAYFVPMS-KIADFLRAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVP 123 (549)
Q Consensus 45 ~~~~~v~~Gi~PTG~lHIGn~~~~~-~l~~l~~~G~~v~ilIaD~~a~~~~~~~~~~~~~~~~~~~~~~i~~~l~a~Gld 123 (549)
.+++++|+||+|||.||||||++.+ .+++||+. ++++++|||+||+++++.++. +.+.+..+ +.+.|+|+|+|
T Consensus 20 ~~~~~vysG~~PTG~lHLGn~~g~l~~~~~lQ~~-~~~~~~IaD~ha~~~~~~~~e---~i~~~~~~--~~~~~la~Gld 93 (351)
T 1yi8_B 20 PARPRVLTGDRPTGALHLGHLAGSLQNRVRLQDE-AELFVLLADVQALTDHFDRPE---QVRENVLA--VALDYLAAGLD 93 (351)
T ss_dssp -CCSEEEEEECCSSCCBHHHHHHTHHHHHHHTSS-SEEEEEECHHHHHHHHTTCHH---HHHHHHHH--HHHHHHHHTCC
T ss_pred CCCcEEEEeeCCCCCccHHHHHHHHHHHHHHHHh-CCeEEEEecchhhcCCCCCHH---HHHHHHHH--HHHHHHHhCCC
Confidence 4578999999999999999999754 45556655 999999999999998755543 34444433 24678899999
Q ss_pred CCeeEEEEccccccccccHHH------HHHHHcccCHHHHHHhhHHHhhhccCCCcccchhhHHhhcccccccCcEEEec
Q psy5948 124 ISKLKFVKGTDYQLSKEYTLD------VYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFGG 197 (549)
Q Consensus 124 p~k~~i~~qS~~~~~~~~~~~------~~~l~~~~t~~~~k~~~~~~~~~~~~~~~~~~~YP~LqAaDil~~~~d~~~gG 197 (549)
|+++.||+||+|+.+.++.+. +.+|.++.++++.... ....++.++|+|+||+||||||+++++++||||
T Consensus 94 p~k~~i~~qS~~~~~~el~~~l~~~~~v~~l~r~~~~k~~~~~----~~f~~~~~~g~f~YPvLQAaDil~~~~~~vpvG 169 (351)
T 1yi8_B 94 PQKTTCVVQSAVPELAELTVYFLNLVTVSHLRQNPTVKAEIAQ----KGYGERVPAGFFVYPVSQAADIAAFGATLVPVG 169 (351)
T ss_dssp TTTEEEEEGGGCTHHHHHHHHHHTTSBHHHHHTCHHHHHHHHH----HTCTTCCBHHHHHHHHHHHHHHHHHTCSEEEEC
T ss_pred hhhcEEEEcCchhhHHHHHHHHhccCCHHHHHhhhHHHHHHhh----cCCCCCCchHhhhhHHHHHhhHHhcCCCEEEec
Confidence 999999999999766655432 2344444333221110 000246789999999999999999999999999
Q ss_pred ccchhhHHHHHHhhhhcC------CCce-eEE-ecccccCCCCC-CccCCCCCCeeeccCCHHHHHHHHHhccCCC----
Q psy5948 198 VDQRKIFTLAEKYLPQLG------YAKR-IHF-MNPMVPGLAGG-KMSSSEEDSKIDLLDAPALVKKKLKKAFCEP---- 264 (549)
Q Consensus 198 ~DQ~~~~~~~r~l~~~~~------~~~~-~~l-~~plL~~l~G~-KMSKS~~~s~I~L~Dsp~~i~kKI~~A~td~---- 264 (549)
.|||+|++++|++++++| +..| ..+ ++|+|+|++|+ |||||.++ +|||+|+|+++++||++|+|||
T Consensus 170 ~DQ~~hi~l~rdia~r~n~~yg~~f~~P~~~~~~~~~l~~ldG~~KMSKS~~n-~I~L~d~p~~i~~Ki~~a~td~~~~~ 248 (351)
T 1yi8_B 170 DDQLPMLEQTREIVRRFNALYAPVLAEPQAQLSRVPRLPGLDGQAKMSKSLGN-AIALGDSADEVARKVMGMYTDPGHLR 248 (351)
T ss_dssp GGGHHHHHHHHHHHHHHHHHTCSCSCCCEEEECSSCSCCCTTSSSCCCTTTTC-CCBTTCCHHHHHHHHHTCCCCTTCCS
T ss_pred CCcHHHHHHHHHHHHHHHhhcccccCCCeeeeecCccccCCCCccccCCCCCC-eecCCCCHHHHHHHHHhcCCCccccc
Confidence 999999999999999875 2233 334 47999999996 99999997 8999999999999999999997
Q ss_pred ----CCCCcchhhchhhhheecccCCCcceeeeecccCCCCCCCCCHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCchh
Q psy5948 265 ----GNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPADLKAAAEFYINRLLEPIR 340 (549)
Q Consensus 265 ----~~~~~~~v~~~~k~~lf~~~~~~~~~~i~~~~~~g~~~~~~~~eel~~~~~~g~l~~~dlK~~Lae~l~~~l~pir 340 (549)
+++++|+++.|++++.+ ..+++++|+++|.+|+++|++||++||++|+++|+|+|
T Consensus 249 ~~~~~~~~~~~~~~~l~~~~~---------------------~~~~ieel~~~~~~g~~~~~~~K~~La~~i~~~l~pir 307 (351)
T 1yi8_B 249 ASDPGRVEGNPVFTFLDAFDP---------------------DPARVQALKDQYRAGGLGDVKVKKHLIDVLNGVLAPIR 307 (351)
T ss_dssp TTSCCCCTTCTTHHHHHHHCS---------------------CHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCccchHHHHHHHHcC---------------------ChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhHHH
Confidence 67788899988874321 12467999999999999999999999999999999999
Q ss_pred hhhcc
Q psy5948 341 KKFES 345 (549)
Q Consensus 341 ~~~~~ 345 (549)
++|++
T Consensus 308 e~~~~ 312 (351)
T 1yi8_B 308 TRRAE 312 (351)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99973
No 29
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=100.00 E-value=5.9e-54 Score=445.41 Aligned_cols=267 Identities=20% Similarity=0.266 Sum_probs=211.8
Q ss_pred ceEEEeecCCCccchhhhHHHH-HHHHHHHcC-CcEEEEEeCceeeecCC-CChhHHHHHHHHHHHHHHHHHHHccCCCC
Q psy5948 48 LKIYWGTATTGRPHIAYFVPMS-KIADFLRAG-CEVTILFADLHAYLDNM-KAPWELLALRTKYYEESIKAMLESIDVPI 124 (549)
Q Consensus 48 ~~v~~Gi~PTG~lHIGn~~~~~-~l~~l~~~G-~~v~ilIaD~~a~~~~~-~~~~~~~~~~~~~~~~~i~~~l~a~Gldp 124 (549)
.++|+||+|||.||||||++.+ .+.+||++| ++++++|||+||++++. .++ ...+.+..+ +.+.|+|+|+||
T Consensus 2 ~~vy~G~~PTg~lHlGh~~g~l~~~~~lQ~~G~~~~~~~IaD~~a~~~~~~~~~---~~i~~~~~~--~~~~~la~Gldp 76 (337)
T 2el7_A 2 KRVLSGIQPSGEIHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDP---STLAQRTFE--AALVNIAAGLDP 76 (337)
T ss_dssp CCEEEEECSCSCCBHHHHHTHHHHHHHHHHHHGGGEEEEECGGGGGGSTTTSCH---HHHHHHHHH--HHHHHHHHTCCT
T ss_pred CEEEEeeCCCCcccHHHHHHHHHHHHHHHhcCCCCEEEEEeCceeecCCCCCCH---HHHHHHHHH--HHHHHHHhCCCh
Confidence 4899999999999999999654 688889999 99999999999999872 223 334444433 246788999999
Q ss_pred CeeEEEEccccccccccHHHHHHHHcccCHHHHHHhh--HHHhhhccCCCcccchhhHHhhcccccccCcEEEecccchh
Q psy5948 125 SKLKFVKGTDYQLSKEYTLDVYRLSSVITEHDAKKAG--AEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFGGVDQRK 202 (549)
Q Consensus 125 ~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~k~~~--~~~~~~~~~~~~~~~~YP~LqAaDil~~~~d~~~gG~DQ~~ 202 (549)
+++.||+||+|+.+.++.+. ++..++..++.+.. ....+..++.++++|+||+||||||+++++++||||.|||+
T Consensus 77 ~k~~i~~qS~~~~~~el~~~---l~~~~~~~~l~r~~~~k~r~~~~~~~~~g~f~YPvLQaaDil~~~~~lvp~G~DQ~~ 153 (337)
T 2el7_A 77 EKVTLFVQSHVPEHTELSWV---FTTLTPLGDLTRMTQFKDKASKQETVWSGLLMYPVLQAADILIYKADTVPVGEDQVQ 153 (337)
T ss_dssp TTSEEEEGGGSTHHHHHHHH---HHHTSBHHHHHTSHHHHHHTTSSSCCBHHHHHHHHHHHHHHHHTTCCEEECCGGGCH
T ss_pred hheEEEEcCcchhhHHHHHH---HHccCCHHHHHHhHHHHHHhccCCCCChHHHHhHHHHHhhHHhhCCcEEEcccchHH
Confidence 99999999999765554432 33344444443321 11122335678999999999999999999999999999999
Q ss_pred hHHHHHHhhhhcC------CCceeEEec---ccccCCCC-CCccCCCCCCeeeccCCHHHHHHHHHhccCCC--------
Q psy5948 203 IFTLAEKYLPQLG------YAKRIHFMN---PMVPGLAG-GKMSSSEEDSKIDLLDAPALVKKKLKKAFCEP-------- 264 (549)
Q Consensus 203 ~~~~~r~l~~~~~------~~~~~~l~~---plL~~l~G-~KMSKS~~~s~I~L~Dsp~~i~kKI~~A~td~-------- 264 (549)
|++++|++++++| +..|..+++ |+|++++| +|||||.++ +|||+|+|+++++||++|+||+
T Consensus 154 ~i~l~rdla~r~n~~~g~~f~~P~~~~~~~~p~l~gldG~~KMSKS~~n-~I~L~d~p~~i~~Ki~~a~td~~~~~~~~~ 232 (337)
T 2el7_A 154 HIELTREIARRFNHLFGETFPEPQALLNPEAPRVPGIDGKAKMSKSLGN-TIGLLEPEESIWQKIQHLPDDPQRIRLSDP 232 (337)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCCCEEECCTTSCCCBCTTSSSBCCTTTTC-CCBSSSCHHHHHHHHHTCCCCC--------
T ss_pred HHHHHHHHHHHHHhhcCcccCCCeeecccccccccCCCCccccCCCCCC-eeeCcCCHHHHHHHHHhCCCCCccccccCC
Confidence 9999999999874 234444433 89999999 999999997 8999999999999999999997
Q ss_pred CCCCcchhhchhhhheecccCCCcceeeeecccCCCCCCCCCHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCchhhhhc
Q psy5948 265 GNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPADLKAAAEFYINRLLEPIRKKFE 344 (549)
Q Consensus 265 ~~~~~~~v~~~~k~~lf~~~~~~~~~~i~~~~~~g~~~~~~~~eel~~~~~~g~l~~~dlK~~Lae~l~~~l~pir~~~~ 344 (549)
++++.|++++|+++ | . + .+++++|+++|.+|+++|++||++||++|+++++|+|++|+
T Consensus 233 ~~p~~~~v~~~~~~--~---t--------------~---~~~i~~l~~~~~~g~~~~~~~K~~La~~i~~~l~p~re~~~ 290 (337)
T 2el7_A 233 GDPERTILFTYLSY--F---A--------------P---KDLVEALKEEYRKAGVGTYVVKRILFDHLMEALRPIRERAE 290 (337)
T ss_dssp -----CHHHHHHHH--H---S--------------C---HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchhhHHHHHHH--c---C--------------C---hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 55566777777662 2 1 0 03799999999999999999999999999999999999998
Q ss_pred c
Q psy5948 345 S 345 (549)
Q Consensus 345 ~ 345 (549)
+
T Consensus 291 ~ 291 (337)
T 2el7_A 291 A 291 (337)
T ss_dssp H
T ss_pred H
Confidence 4
No 30
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=100.00 E-value=7e-54 Score=443.32 Aligned_cols=261 Identities=18% Similarity=0.231 Sum_probs=208.9
Q ss_pred ceEEEeecCCCccchhhhHHHH-HHHHHHHcCCcEEEEEeCceeeecCCCChhHHHHHHHHHHHHHHHHHHHccCCCCCe
Q psy5948 48 LKIYWGTATTGRPHIAYFVPMS-KIADFLRAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISK 126 (549)
Q Consensus 48 ~~v~~Gi~PTG~lHIGn~~~~~-~l~~l~~~G~~v~ilIaD~~a~~~~~~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~k 126 (549)
.++|+||+|||.||||||++.+ .+.+||+ |++++++|||+||+++ +.++. +.+.+..+ +.+.|+|+|+||++
T Consensus 2 ~~vysG~~PTG~lHlGn~vg~l~~~~~lQ~-g~~~~~~IaD~ha~~~-~~~~e---~i~~~~~~--~~~~~la~Gldp~k 74 (328)
T 1i6k_A 2 KTIFSGIQPSGVITIGNYIGALRQFVELQH-EYNCYFCIVDQHAITV-WQDPH---ELRQNIRR--LAALYLAVGIDPTQ 74 (328)
T ss_dssp CEEEEEECCCSCCBHHHHHHTHHHHHHHTT-TSEEEEEECHHHHTTS-CCCHH---HHHHHHHH--HHHHHHHTTCCTTT
T ss_pred CEEEEeeCCCCcccHHHHHHHHHHHHHHHc-CCcEEEEEeCceeecC-CCCHH---HHHHHHHH--HHHHHHHhCCChhh
Confidence 5899999999999999999765 4555554 9999999999999998 55554 34444333 34678999999999
Q ss_pred eEEEEccccccccccHHH------HHHHHcccCHHHHHHhhHHHhhhccCCCcccchhhHHhhcccccccCcEEEecccc
Q psy5948 127 LKFVKGTDYQLSKEYTLD------VYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFGGVDQ 200 (549)
Q Consensus 127 ~~i~~qS~~~~~~~~~~~------~~~l~~~~t~~~~k~~~~~~~~~~~~~~~~~~~YP~LqAaDil~~~~d~~~gG~DQ 200 (549)
+.||+||+|+.+.++.|. +.++.++++.++. ....++.++++|+||+||||||+++++++||||.||
T Consensus 75 ~~if~qS~~~~~~~l~w~l~~~~~~~~l~r~~~~k~~-------~~~~~~~~~g~f~YPvLQaaDil~~~~~~vpvG~DQ 147 (328)
T 1i6k_A 75 ATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEK-------SAGKEAVSAGLLTYPPLMAADILLYNTDIVPVGEDQ 147 (328)
T ss_dssp EEEEEGGGCTHHHHHHHHHHHHSCHHHHHTCHHHHHH-------HTTCSSCCHHHHTHHHHHHHHHHTTTCSEEECCGGG
T ss_pred cEEEecCchhhhhHHHHHHhccccHHHHHHHHHHHHH-------HhccCCCCchhhccHHHHHHHHHHhCCCEEecccch
Confidence 999999999876655442 3345555432221 111256789999999999999999999999999999
Q ss_pred hhhHHHHHHhhhhcCC------CceeEE---ecccccCCCC--CCccCCCCCCe--eeccCCHHHHHHHHHhccCCCCC-
Q psy5948 201 RKIFTLAEKYLPQLGY------AKRIHF---MNPMVPGLAG--GKMSSSEEDSK--IDLLDAPALVKKKLKKAFCEPGN- 266 (549)
Q Consensus 201 ~~~~~~~r~l~~~~~~------~~~~~l---~~plL~~l~G--~KMSKS~~~s~--I~L~Dsp~~i~kKI~~A~td~~~- 266 (549)
|+|++++|++++++|. ..|..+ ++|+|+||+| +|||||.++++ |||+|+|++|++|||+|+|||.+
T Consensus 148 ~~~iel~Rdia~r~n~~yg~~f~~P~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~d~~~~i~~KI~~a~td~~~~ 227 (328)
T 1i6k_A 148 KQHIELTRDLAERFNKRYGELFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGT 227 (328)
T ss_dssp HHHHHHHHHHHHHHHHHHCSCCCCCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTCCHHHHHHHHHHCCCCSSCC
T ss_pred HHHHHHHHHHHHHhCcccccccCCCeeeeccccccccCCCCCccCCCCCCCCcCceeeecCCHHHHHHHHHhcCCCCccc
Confidence 9999999999999873 234433 3699999999 89999999856 99999999999999999999854
Q ss_pred -C----CcchhhchhhhheecccCCCcceeeeecccCCCCCCCCCHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCchhh
Q psy5948 267 -V----EDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPADLKAAAEFYINRLLEPIRK 341 (549)
Q Consensus 267 -~----~~~~v~~~~k~~lf~~~~~~~~~~i~~~~~~g~~~~~~~~eel~~~~~~g~l~~~dlK~~Lae~l~~~l~pir~ 341 (549)
. .++++.+ +|.+++. |+ .+++++|+++|. | ++|++||++||++|+++++|||+
T Consensus 228 ~~~~~~~~p~v~~-----~~~~~~~---~~------------~~~~~el~~~~~-g-~~~~~~K~~La~~i~~~l~pire 285 (328)
T 1i6k_A 228 IRYDKEAKPGISN-----LLNIYST---LS------------GQSIEELERQYE-G-KGYGVFKADLAQVVIETLRPIQE 285 (328)
T ss_dssp CCCBTTTBHHHHH-----HHHHHHH---HH------------CCCHHHHHHHTT-T-CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCcchhh-----HHHHHHH---CC------------chhHHHHHHHHc-C-CCHHHHHHHHHHHHHHHhHHHHH
Confidence 1 2344544 4455543 31 368999999999 6 99999999999999999999999
Q ss_pred hhc
Q psy5948 342 KFE 344 (549)
Q Consensus 342 ~~~ 344 (549)
+|+
T Consensus 286 ~~~ 288 (328)
T 1i6k_A 286 RYH 288 (328)
T ss_dssp HHH
T ss_pred HHH
Confidence 998
No 31
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=100.00 E-value=5.5e-54 Score=448.14 Aligned_cols=292 Identities=17% Similarity=0.195 Sum_probs=223.3
Q ss_pred HHHHHHHcccccccCHH-----HHHHHHhcC----CceEEEeecCCCc-cchhhhHHHHHHHHHHHcCCcEEEEEeCcee
Q psy5948 21 EKKQLITRNLQEFLGED-----RLNVILKER----DLKIYWGTATTGR-PHIAYFVPMSKIADFLRAGCEVTILFADLHA 90 (549)
Q Consensus 21 ~~~~li~R~~~ei~~~~-----~L~~~l~~~----~~~v~~Gi~PTG~-lHIGn~~~~~~l~~l~~~G~~v~ilIaD~~a 90 (549)
-..+|++|++.+.++++ +|+++|+.+ ++++|+||+|||+ |||||+++++.+++||++|++++++|||+||
T Consensus 11 ~~~~l~~Rg~~~~~~~~~~~~~~L~~~L~~~~~g~~~~vy~G~~PTg~sLHLGhl~~l~~~~~lQ~~G~~~~~lIaD~ha 90 (356)
T 2pid_A 11 LLAAQKARGLFKDFFPETGTKIELPELFDRGTASFPQTIYCGFDPTADSLHVGHLLALLGLFHLQRAGHNVIALVGGATA 90 (356)
T ss_dssp HHHHHHHHTSCCEEECSSCTTSCGGGGC-------CCEEEEEECCSSSSCBHHHHHHHHHHHHHHHTTCEEEEEECTTGG
T ss_pred HHHHHHHcCChheeCCccccHHHHHHHHhcCccCCCCEEEEeecCCCCcccHHHHHHHHHHHHHHHCCCcEEEEEcccee
Confidence 35688999987667765 899998753 4899999999997 9999999999999999999999999999999
Q ss_pred eecCCCChh------HHHHHHHHHHHHHHHHHHHccCCCCC-----------eeEEEEccccccccccHHHHHHHHcccC
Q psy5948 91 YLDNMKAPW------ELLALRTKYYEESIKAMLESIDVPIS-----------KLKFVKGTDYQLSKEYTLDVYRLSSVIT 153 (549)
Q Consensus 91 ~~~~~~~~~------~~~~~~~~~~~~~i~~~l~a~Gldp~-----------k~~i~~qS~~~~~~~~~~~~~~l~~~~t 153 (549)
+++||++.. +..+.+.+... +.+.++|+ +||+ ++.|++||+|..+..+++-+..++++++
T Consensus 91 l~~dp~g~~~~R~~l~~e~i~~n~~~--~~~~~~a~-lDp~~~~~qs~~~~~~~~i~~ns~w~~~~~~~~~l~~~~~~~~ 167 (356)
T 2pid_A 91 RLGDPSGRTKEREALETERVRANARA--LRLGLEAL-AANHQQLFTDGRSWGSFTVLDNSAWYQKQHLVDFLAAVGGHFR 167 (356)
T ss_dssp GTCCCTTCSSCCCCCCHHHHHHHHHH--HHHHHHHH-HHHHHHHSCCSSCCCCEEEEETHHHHTTCBHHHHHHHHGGGSB
T ss_pred eecCCcccccccccCCHHHHHHHHHH--HHHHHHHh-cChhhccccccCCCcceEEEechHhhhhccHHHHHHHHhccee
Confidence 999876432 33444444332 23456666 6664 4999999999655555444444667777
Q ss_pred HHHHHHhhH--HHhhhccCCCcccchhhHHhhcccccc----cCcEEEecccchhhHHHHHHhhhhcCCCceeEEecccc
Q psy5948 154 EHDAKKAGA--EVVKQVEHPLLSGLLYPGLQALDEEYL----KVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMV 227 (549)
Q Consensus 154 ~~~~k~~~~--~~~~~~~~~~~~~~~YP~LqAaDil~~----~~d~~~gG~DQ~~~~~~~r~l~~~~~~~~~~~l~~plL 227 (549)
..++..... ..++..++.++++|+||+||||||+++ +|++||||.|||+|++++|++++++|..+++.++.|+|
T Consensus 168 v~~m~~~~~~k~r~~~~~~is~g~f~YPvLQAaDil~l~~~~~~~i~p~G~DQ~~~i~l~rdla~r~n~~~~~~l~~pll 247 (356)
T 2pid_A 168 MGTLLSRQSVQLRLKSPEGMSLAEFFYQVLQAYDFYYLFQRYGCRVQLGGSDQLGNIMSGYEFINKLTGEDVFGITVPLI 247 (356)
T ss_dssp HHHHHHCHHHHHHHTSTTCCBHHHHHHHHHHHHHHHHHHHHHCCCEEEEEGGGHHHHHHHHHHHHHHSSCCCEEEEECCC
T ss_pred HHHHhcchHHHHhhccCCCCchHHHHHHHHHHHHHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhCCCCccccccccc
Confidence 777655322 122223467899999999999999999 99999999999999999999999999999999999999
Q ss_pred cCCCCCCccCCCCCCeeeccC---CHHHHHHHHHhccCCCCCCCcchhhchhhhheecccCCCcceeeeecccCCCCCCC
Q psy5948 228 PGLAGGKMSSSEEDSKIDLLD---APALVKKKLKKAFCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNF 304 (549)
Q Consensus 228 ~~l~G~KMSKS~~~s~I~L~D---sp~~i~kKI~~A~td~~~~~~~~v~~~~k~~lf~~~~~~~~~~i~~~~~~g~~~~~ 304 (549)
++++|+|||||.+ |+|||+| +|+++++||+++ .|++|.+|++ +|+.++ .
T Consensus 248 ~~ldG~KMSKS~~-naI~L~d~~tsp~~i~~ki~~~-------~D~~v~~~l~--~~t~~~------------------~ 299 (356)
T 2pid_A 248 TSTTGAKLGKSAG-NAVWLNRDKTSPFELYQFFVRQ-------PDDSVERYLK--LFTFLP------------------L 299 (356)
T ss_dssp C--------------CCBSSTTTSCHHHHHHHHHTC-------CHHHHHHHHH--HHCCCC------------------H
T ss_pred cCCCcccccCCCC-CeeeccCCCCCHHHHHHHHHcC-------CchhHHHHHH--HHHcCC------------------c
Confidence 9999999999976 5999999 999999999983 5788998887 343222 2
Q ss_pred CCHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCchhhhhc
Q psy5948 305 SDYQSLEQVFAKQELHPADLKAAAEFYINRLLEPIRKKFE 344 (549)
Q Consensus 305 ~~~eel~~~~~~g~l~~~dlK~~Lae~l~~~l~pir~~~~ 344 (549)
+++++|+++|.+| .+++++|+.||++|+++++...+..+
T Consensus 300 ~~i~~l~~~~~~g-~~~~~~K~~La~~v~~~l~g~~~~~~ 338 (356)
T 2pid_A 300 PEIDHIMQLHVKE-PERRGPQKRLAAEVTKLVHGREGLDS 338 (356)
T ss_dssp HHHHHHHHHHHHC-GGGCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 5789999999987 59999999999999999998776554
No 32
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=100.00 E-value=3.2e-54 Score=446.46 Aligned_cols=264 Identities=19% Similarity=0.252 Sum_probs=208.3
Q ss_pred CCceEEEeecCCCccchhhhHHHH-HHHHHHHcCCcEEEEEeCceeeecCCCChhHHHHHHHHHHHHHHHHHHHccCCCC
Q psy5948 46 RDLKIYWGTATTGRPHIAYFVPMS-KIADFLRAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPI 124 (549)
Q Consensus 46 ~~~~v~~Gi~PTG~lHIGn~~~~~-~l~~l~~~G~~v~ilIaD~~a~~~~~~~~~~~~~~~~~~~~~~i~~~l~a~Gldp 124 (549)
...++|+|++|||.+|||||++.+ .+++|| .+++++|+|||+||+++ +.++ .+.+.+..++ .+.|+|+|+||
T Consensus 14 ~~~~i~sG~~PTG~lHLGh~vg~l~~~~~lQ-~~~~~~~~iaD~hA~t~-~~~~---~~~~~~~~~~--~~~~lA~GlDp 86 (346)
T 3n9i_A 14 SKPIVFSGAQPSGELTIGNYMGALRQWVQMQ-DDYDCIYCIVDLHAITA-RQDP---ALLRKRTLDT--LALYLACGIDP 86 (346)
T ss_dssp -CCEEEEEECSCSCCBHHHHHHTHHHHHTTT-TTSEEEEEECHHHHTTS-CCCH---HHHHHHHHHH--HHHHHHHTCCT
T ss_pred CCCEEEECcCCCCcccHHHHHHHHHHHHHHH-hhCcEEEEEecceeecC-CCCH---HHHHHHHHHH--HHHHHHcCCCc
Confidence 356999999999999999999864 344444 57999999999999996 3444 3455544442 46889999999
Q ss_pred CeeEEEEccccccccccHHH------HHHHHcccCHHHHHHhhHHHhhhccCCCcccchhhHHhhcccccccCcEEEecc
Q psy5948 125 SKLKFVKGTDYQLSKEYTLD------VYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFGGV 198 (549)
Q Consensus 125 ~k~~i~~qS~~~~~~~~~~~------~~~l~~~~t~~~~k~~~~~~~~~~~~~~~~~~~YP~LqAaDil~~~~d~~~gG~ 198 (549)
+|++||+||+|+.+.+++|- +.++.++++.++.. .+..++.++|+|+||+||||||+++++|++|||.
T Consensus 87 ~k~~if~qS~v~~~~el~~~l~~~~~~~~l~R~~~~k~~~------~~~~~~~~~g~~~YP~lQAaDil~~~ad~vpvG~ 160 (346)
T 3n9i_A 87 KKSTIFVQSHVPEHSQLSWALNCYTYFGELSRMTQFKDKS------ARYAENINAGLFDYPVLMAADILLYQTNQVPVGE 160 (346)
T ss_dssp TTSEEEEGGGCTHHHHHHHHHHTTSBHHHHHTCHHHHHHH------HHSGGGCBHHHHHHHHHHHHHHHTTTCSEECCCG
T ss_pred cceEEEeccccccchHHHHHHHHHhhHHHHHHHHHHHHHH------hccCCCCCchhHHhHHHHHHHHHHhCceEEEecc
Confidence 99999999999877765543 34455554333211 1223457899999999999999999999999999
Q ss_pred cchhhHHHHHHhhhhcCC--Cc----ee-EEe--cccccCC-CC-CCccCCCCC--CeeeccCCHHHHHHHHHhccCCCC
Q psy5948 199 DQRKIFTLAEKYLPQLGY--AK----RI-HFM--NPMVPGL-AG-GKMSSSEED--SKIDLLDAPALVKKKLKKAFCEPG 265 (549)
Q Consensus 199 DQ~~~~~~~r~l~~~~~~--~~----~~-~l~--~plL~~l-~G-~KMSKS~~~--s~I~L~Dsp~~i~kKI~~A~td~~ 265 (549)
||++|++++|++++++|+ .+ |- .++ +++|+|| +| +|||||+++ |+|||+|+|++|++|||+|+||++
T Consensus 161 DQ~~hleltRdia~rfn~~yg~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~p~~i~kKI~kA~Td~~ 240 (346)
T 3n9i_A 161 DQKQHLELSRDIASRFNNLYGDIFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLEDPKSVVKKIKRAMTDSD 240 (346)
T ss_dssp GGHHHHHHHHHHHHHHHHHHSSCSCCCEECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTTSCHHHHHHHHHTCCCCCC
T ss_pred chHHHHHHHHHHHHHhccccCCcccccchhccCCcccCccCCCCccccCCCCCCCCceecCCCCHHHHHHHHHhCcCCCC
Confidence 999999999999999883 22 22 222 3788999 67 599999986 899999999999999999999997
Q ss_pred CC--------CcchhhchhhhheecccCCCcceeeeecccCCCCCCCCCHHHHHHHHHcCCCChHHHHHHHHHHHHHhcC
Q psy5948 266 NV--------EDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPADLKAAAEFYINRLLE 337 (549)
Q Consensus 266 ~~--------~~~~v~~~~k~~lf~~~~~~~~~~i~~~~~~g~~~~~~~~eel~~~~~~g~l~~~dlK~~Lae~l~~~l~ 337 (549)
++ .++++.+ +|.+++. |. ++++++++++|.+| +|++||++|++.|+++|+
T Consensus 241 ~~~~~~~~~~~~p~v~~-----l~~~~~~---~~------------~~~~eel~~~y~~~--~~g~lK~~lae~l~~~L~ 298 (346)
T 3n9i_A 241 EPALIRYDVEKKAGVSN-----LLDILSG---VT------------GQSIPELEAQFTGQ--MYGHLKGAVADAVSGMLS 298 (346)
T ss_dssp SSCCCCCCTTTCHHHHH-----HHHHHHH---HH------------CCCHHHHHHHTTTC--CHHHHHHHHHHHHHHHHH
T ss_pred CCccccCCCCCCCChhH-----HHHHHHh---cC------------CccHHHHHHHHhCC--CHHHHHHHHHHHHHHHHH
Confidence 52 3445543 5566654 32 36899999999865 699999999999999999
Q ss_pred chhhhhc
Q psy5948 338 PIRKKFE 344 (549)
Q Consensus 338 pir~~~~ 344 (549)
|||++|+
T Consensus 299 pirer~~ 305 (346)
T 3n9i_A 299 ELQERYR 305 (346)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999998
No 33
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=100.00 E-value=1.5e-52 Score=445.80 Aligned_cols=297 Identities=17% Similarity=0.194 Sum_probs=240.8
Q ss_pred HHHHHHccccc-ccCHHHHHHHHhcCCceEEEeecCCCc-cchhhhHHHHHHHHHHHcCCcEEEEEeCceeeecCCCC--
Q psy5948 22 KKQLITRNLQE-FLGEDRLNVILKERDLKIYWGTATTGR-PHIAYFVPMSKIADFLRAGCEVTILFADLHAYLDNMKA-- 97 (549)
Q Consensus 22 ~~~li~R~~~e-i~~~~~L~~~l~~~~~~v~~Gi~PTG~-lHIGn~~~~~~l~~l~~~G~~v~ilIaD~~a~~~~~~~-- 97 (549)
.-+|++||+.+ +..+++|+++|+++++++|+||+|||+ ||||||++++.+++||++||+++++|||+||+++||++
T Consensus 6 ~~~l~~Rg~~~~~~~~~~L~~~L~~~~~~iy~G~dPTg~sLHlGh~v~l~~~~~lQ~~G~~~~~lIgd~ta~igdp~gk~ 85 (420)
T 1jil_A 6 IEDLKWRGLIYQQTDEQGIEDLLNKEQVTLYCGADPTADSLHIGHLLPFLTLRRFQEHGHRPIVLIGGGTGMIGDPSGKS 85 (420)
T ss_dssp HHHHHHTTCCCCBSCHHHHHHHHHHSCCEEEEEECCSSSSCBHHHHHHHHHHHHHHHTTCEEEEEECTTGGGTCCCTTCS
T ss_pred HHHHHHcCchhhcCCHHHHHHHHcCCCCEEEEeeCCCCCCccHHHHHHHHHHHHHHHCCCcEEEEEcCceeEecCCCccc
Confidence 34788999765 788899999999899999999999999 99999999999999999999999999999999999873
Q ss_pred -------hhHHHHHHHHHHHHHHHHHHHccCCCC---CeeEEEEccccccccccHHHHHH-HHcccCHHHHHHhhHHHhh
Q psy5948 98 -------PWELLALRTKYYEESIKAMLESIDVPI---SKLKFVKGTDYQLSKEYTLDVYR-LSSVITEHDAKKAGAEVVK 166 (549)
Q Consensus 98 -------~~~~~~~~~~~~~~~i~~~l~a~Gldp---~k~~i~~qS~~~~~~~~~~~~~~-l~~~~t~~~~k~~~~~~~~ 166 (549)
+.++.++...+.. .+.++ +|| +++.++.||+|.. ....+++++ ++++++.+++.+......+
T Consensus 86 ~~R~~l~~e~i~~n~~~~~~-----~~~~~-ld~~~~~k~~i~~ns~w~~-~~~~l~~l~~~~~~~tv~~m~~~~~~k~r 158 (420)
T 1jil_A 86 EERVLQTEEQVDKNIEGISK-----QMHNI-FEFGTDHGAVLVNNRDWLG-QISLISFLRDYGKHVGVNYMLGKDSIQSR 158 (420)
T ss_dssp SCCCCCCHHHHHHHHHHHHH-----HHHHH-SCCSSSSSCEEEETHHHHT-TCCHHHHHHHTGGGCCHHHHHTCGGGHHH
T ss_pred cccccCCHHHHHHHHHHHHH-----HHHHH-hCCCCCCceEEEEchhhhh-hccHHHHHHHHhccccHHHHhcchhhhhh
Confidence 3333333333333 33444 555 9999999999942 222334444 6788888887654221111
Q ss_pred hccCCCcccchhhHHhhcccccc----cCcEEEecccchhhHHHHHHhhhhc-CCCceeEEecccccCCCCCCccCCCCC
Q psy5948 167 QVEHPLLSGLLYPGLQALDEEYL----KVDAQFGGVDQRKIFTLAEKYLPQL-GYAKRIHFMNPMVPGLAGGKMSSSEED 241 (549)
Q Consensus 167 ~~~~~~~~~~~YP~LqAaDil~~----~~d~~~gG~DQ~~~~~~~r~l~~~~-~~~~~~~l~~plL~~l~G~KMSKS~~~ 241 (549)
..++.++++|+||+|||||++++ +|++|+||.|||+|++++|++++++ +..+++++++|+|++++|+|||||.++
T Consensus 159 ~~~~is~~ef~YplLQaaD~l~l~~~~~~~i~~gG~DQ~~ni~~grdla~r~~~~~~~~~l~~pll~~ldG~KMSKS~~n 238 (420)
T 1jil_A 159 LEHGISYTEFTYTILQAIDFGHLNRELNCKIQVGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDGKKFGKSESG 238 (420)
T ss_dssp HTTTCCHHHHHHHHHHHHHHHHHHHHHCEEEEEEEGGGHHHHHHHHHHHHHHHCCCCCEEEEECCCBCTTSCBTTBCSSS
T ss_pred ccCCcchHHHHHHHHHHHHHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhcCCCCeeEeecccccCCccccccCCCCC
Confidence 13567899999999999999999 9999999999999999999999999 988999999999999999999999985
Q ss_pred CeeeccC---CHHHHHHHHHhccCCCCCCCcchhhchhhhheecccCCCcceeeeecccCCCCCCCCCHHHHHHHHHcCC
Q psy5948 242 SKIDLLD---APALVKKKLKKAFCEPGNVEDNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQE 318 (549)
Q Consensus 242 s~I~L~D---sp~~i~kKI~~A~td~~~~~~~~v~~~~k~~lf~~~~~~~~~~i~~~~~~g~~~~~~~~eel~~~~~~g~ 318 (549)
+|||+| +|+++++||++ +.|+.|.+|++ +|+.+. .+++++|+++|.+|.
T Consensus 239 -aI~L~d~~tsp~~i~~ki~~-------~~D~~v~~~l~--~~t~~~------------------~~ei~~l~~~~~~g~ 290 (420)
T 1jil_A 239 -AVWLDAEKTSPYEFYQFWIN-------QSDEDVIKFLK--YFTFLG------------------KEEIDRLEQSKNEAP 290 (420)
T ss_dssp -BCBSSTTTSCHHHHHHHHHT-------CCHHHHHHHHH--HHCCCC------------------HHHHHHHHHHHHHCG
T ss_pred -eEecCCCCCCHHHHHHHHhc-------CCchhHHHHHH--HHHcCC------------------HHHHHHHHHHHhcCC
Confidence 999999 99999999998 46788999888 343222 268999999999886
Q ss_pred CChHHHHHHHHHHHHHhcCchhhhhcchHHHHHhhhcCC
Q psy5948 319 LHPADLKAAAEFYINRLLEPIRKKFESKELKDLTSKAYP 357 (549)
Q Consensus 319 l~~~dlK~~Lae~l~~~l~pir~~~~~~e~~~~~~~~~~ 357 (549)
+++++|+.||++|+++++...+..+ +++...+.|.
T Consensus 291 -~~~~~K~~La~~v~~~~hg~~~~~~---a~~~~~~~f~ 325 (420)
T 1jil_A 291 -HLREAQKTLAEEVTKFIHGEDALND---AIRISQALFS 325 (420)
T ss_dssp -GGCHHHHHHHHHHHHHHHCHHHHHH---HHHHHHHHC-
T ss_pred -ChHHHHHHHHHHHHHHHcCHHHHHH---HHHHHHHHhc
Confidence 9999999999999999999776554 2333344454
No 34
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=100.00 E-value=3.1e-53 Score=441.44 Aligned_cols=267 Identities=22% Similarity=0.233 Sum_probs=207.6
Q ss_pred CceEEEeecCCCccchhhhHHHH-HHHHHHHcCCcEEEEEeCceeeecCCCChhHHHHHHHHHHHHHHHHHHHccCCCCC
Q psy5948 47 DLKIYWGTATTGRPHIAYFVPMS-KIADFLRAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPIS 125 (549)
Q Consensus 47 ~~~v~~Gi~PTG~lHIGn~~~~~-~l~~l~~~G~~v~ilIaD~~a~~~~~~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~ 125 (549)
++++|+||+|||.||||||++.+ .+++||+ |++++++|||+||++++ .++. +.+.+..+ +.+.|+|+|+||+
T Consensus 4 ~~~i~sG~~PTG~lHLGn~vg~l~~~~~lQ~-~~~~~~~IaD~ha~~~~-~d~~---~i~~~~~~--~~~~~lA~Gldp~ 76 (348)
T 2yy5_A 4 MKRALTGIQASGKQHLGNYLGVMQSLIELQE-QCQLFVFVADLHSITVD-FQPQ---ALKQNNFD--LVRTLLAVGLDPQ 76 (348)
T ss_dssp CCEEEEEECCCTTCBHHHHHHTGGGHHHHHH-HSEEEEEECHHHHTTSC-CCHH---HHHHHHHH--HHHHHHHTTCCTT
T ss_pred CeEEEEeeCCCCcccHHHHHHHHHHHHHHHh-CCcEEEEEcChhhccCC-CCHH---HHHHHHHH--HHHHHHHhCCChh
Confidence 56999999999999999999754 4666776 89999999999999985 4443 44444444 2467899999999
Q ss_pred eeEEEEccccccccccHHH------HHHHHcccCHHHHHHhhHHHh---hhccCCCcccchhhHHhhcccccccCcEEEe
Q psy5948 126 KLKFVKGTDYQLSKEYTLD------VYRLSSVITEHDAKKAGAEVV---KQVEHPLLSGLLYPGLQALDEEYLKVDAQFG 196 (549)
Q Consensus 126 k~~i~~qS~~~~~~~~~~~------~~~l~~~~t~~~~k~~~~~~~---~~~~~~~~~~~~YP~LqAaDil~~~~d~~~g 196 (549)
++.||+||+|+.+.++.|- +.+|.++.+.++ ...... ...++.++++|+||+||||||+++++|++||
T Consensus 77 k~~if~qS~~~~~~el~w~l~~~~~~~~l~R~~~~k~---~~~~~~~~~~~~~~~~~g~~~YPvLQaaDil~~~a~~vpv 153 (348)
T 2yy5_A 77 KACLFLQSDLLEHSMMGYLMMVQSNLGELQRMTQFKA---KKAEQTRNPNGTLNIPTGLLTYPALMAGDILLYQPDIVPV 153 (348)
T ss_dssp TEEEEEGGGCHHHHHHHHHHHHHSBHHHHHHCHHHHT---TC-----------CCBTHHHHHHHHHHHHHHTTCCSEEEC
T ss_pred HeEEEECCcccchhHHHHHHHhhccHHHHhchHHHHH---HHHhhccccccCCCCChhhhhhHHHHHHHHHHhCccEEEe
Confidence 9999999999876655432 223333322211 000000 0034678999999999999999999999999
Q ss_pred cccchhhHHHHHHhhhhcC------CCceeEEe---cccccCCCC--CCccCCCCCC--eeeccCCHHHHHHHHHhccCC
Q psy5948 197 GVDQRKIFTLAEKYLPQLG------YAKRIHFM---NPMVPGLAG--GKMSSSEEDS--KIDLLDAPALVKKKLKKAFCE 263 (549)
Q Consensus 197 G~DQ~~~~~~~r~l~~~~~------~~~~~~l~---~plL~~l~G--~KMSKS~~~s--~I~L~Dsp~~i~kKI~~A~td 263 (549)
|.||++|++++|++++++| +..|..+. +|+|+||+| +|||||.+++ +|||+|+|++|++|||+|+||
T Consensus 154 G~DQ~~~lel~Rdia~r~n~~yg~~f~~P~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~D~~~~i~~KI~~a~td 233 (348)
T 2yy5_A 154 GNDQKQHLELTRDLAQRIQKKFKLKLRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDDPKEVVVKKIRQATTD 233 (348)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHCCCCCCCEEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTTCCHHHHHHHHHTCCCC
T ss_pred cccHHHHHHHHHHHHHHhhhhcccccCCCeeecccccccccCCCCcchhcCCCCCCCCceEeecCCHHHHHHHHHhCCCC
Confidence 9999999999999999986 33454554 699999999 8999999974 899999999999999999999
Q ss_pred CCC--CC----cchhhchhhhheecccCCCcceeeeecccCCCCCCCCCHH---------HHHHHHHcCCCChHHHHHHH
Q psy5948 264 PGN--VE----DNGVLSFLKHVVFSLLKPGENLVITRDENNGGNLNFSDYQ---------SLEQVFAKQELHPADLKAAA 328 (549)
Q Consensus 264 ~~~--~~----~~~v~~~~k~~lf~~~~~~~~~~i~~~~~~g~~~~~~~~e---------el~~~~~~g~l~~~dlK~~L 328 (549)
|.+ .. ++++.+ +|.+++. |+ +++++ +|+++|. | ++|++||++|
T Consensus 234 ~~~~~~~~~~~~p~v~~-----~~~~~~~---~~------------~~~~~~~~~~~~~~el~~~~~-g-~~~~~~K~~L 291 (348)
T 2yy5_A 234 SFNKIRFASKTQPGVTN-----MLTILKA---LL------------KEPVNQSLTNQLGNDLEAYFS-T-KSYLDLKNAL 291 (348)
T ss_dssp SSCCCSCCTTTCHHHHH-----HHHHHHH---HT------------TSGGGHHHHHHHCSCHHHHGG-G-CCHHHHHHHH
T ss_pred CccccccCCCCCCchhh-----HHHHHHh---CC------------hHhhhhhcccchHHHHHHHHc-C-CCHHHHHHHH
Confidence 953 12 244443 4555543 31 36788 9999999 6 8999999999
Q ss_pred HHHHHHhcCchhhhhcc
Q psy5948 329 EFYINRLLEPIRKKFES 345 (549)
Q Consensus 329 ae~l~~~l~pir~~~~~ 345 (549)
|++|+++++|+|++|++
T Consensus 292 a~~i~~~l~pire~~~~ 308 (348)
T 2yy5_A 292 TEATVNLLVNIQRKREQ 308 (348)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999974
No 35
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=100.00 E-value=3e-52 Score=439.50 Aligned_cols=291 Identities=16% Similarity=0.172 Sum_probs=231.3
Q ss_pred HHHHHccccc-ccC-HHHHHHHHhcCCceEEEeecCCCc-cchhhhHHHHHHHHHHHcCCcEEEEEeCceeeecCCCChh
Q psy5948 23 KQLITRNLQE-FLG-EDRLNVILKERDLKIYWGTATTGR-PHIAYFVPMSKIADFLRAGCEVTILFADLHAYLDNMKAPW 99 (549)
Q Consensus 23 ~~li~R~~~e-i~~-~~~L~~~l~~~~~~v~~Gi~PTG~-lHIGn~~~~~~l~~l~~~G~~v~ilIaD~~a~~~~~~~~~ 99 (549)
-+|++|++.+ +.+ +++|+++++++++++|+||+|||+ ||||||++++.+++||++||+++++|||+||+++||+++.
T Consensus 38 ~~L~~Rg~~~~~~~~~e~l~~ll~~~~~~vy~G~dPTg~sLHlGhlv~l~~l~~lQ~~G~~~~~lIgD~haligdpsgk~ 117 (392)
T 1y42_X 38 DLFEERGYVKDTAGTKEHIAELMRTRRIGAYVGIDPTAPSLHVGHLLPLMPLFWMYLEGYKAFTLIGGSTAKIGDPTGRL 117 (392)
T ss_dssp HHHHHHTCCSCEESCHHHHHHHHHHCCCEEEEEECCCSSSCBGGGHHHHHHHHHHHHHTCEEEEEECTTTTTTCCCCC--
T ss_pred HHHHHCCcHHhhcCCHHHHHHHHcCCCCEEEEeecCCCCCccHHHHHHHHHHHHHHHcCCcEEEEEcCceeEeCCCCCcc
Confidence 3788999765 775 677999998899999999999999 9999999999999999999999999999999999987543
Q ss_pred H---------HHHHHHHHHHHHHHHHHHc-------cCCC---CCeeEEEEccccccccccHHHHH-HHHcccCHHHHHH
Q psy5948 100 E---------LLALRTKYYEESIKAMLES-------IDVP---ISKLKFVKGTDYQLSKEYTLDVY-RLSSVITEHDAKK 159 (549)
Q Consensus 100 ~---------~~~~~~~~~~~~i~~~l~a-------~Gld---p~k~~i~~qS~~~~~~~~~~~~~-~l~~~~t~~~~k~ 159 (549)
. +.++...+..+ +.+++.. +|+| |+++.||.||+|.. ....++++ .++++++.+++..
T Consensus 118 ~~R~~~~~e~i~~n~~~i~~~-~~a~~~~~~~~~~~~g~d~~~p~ks~i~~ns~~~~-~~~~l~~l~~ig~~~~v~rml~ 195 (392)
T 1y42_X 118 KSRDHLSSSDATMNMTKIHYQ-LKKLWENVDTQMRARGYEADWARKRGIVNNNHWWN-KQPMLEVLRRVGHALRIGPMLS 195 (392)
T ss_dssp ---------CHHHHHHHHHHH-HHHHHHHHHHHHHHTTCCCCTTCEEEEEETHHHHT-TCCHHHHHHHHTTTCCHHHHHS
T ss_pred hhhccCCHHHHHHHHHHHHHH-HHHHhccccccccccccccCCCcccEEEEccHHHh-hhhHHHHHHHHhccCcHHHHhh
Confidence 2 22222222222 2233321 5667 78999999999832 22334555 4677777776543
Q ss_pred h--hHHHhhhccCCCcccchhhHHhhcccccc----cCcEEEecccchhhHHHHHHhhhhcCC-----------------
Q psy5948 160 A--GAEVVKQVEHPLLSGLLYPGLQALDEEYL----KVDAQFGGVDQRKIFTLAEKYLPQLGY----------------- 216 (549)
Q Consensus 160 ~--~~~~~~~~~~~~~~~~~YP~LqAaDil~~----~~d~~~gG~DQ~~~~~~~r~l~~~~~~----------------- 216 (549)
. ....++..+++++++|+||+||||||+++ +|++||||.|||+|++++|+++++++.
T Consensus 196 ~~~~k~r~~~~~~is~gef~YPlLQAaDil~l~~~~~~~i~~gG~DQ~~ni~~grdlarrfn~~~~~~~~~~~~~p~l~~ 275 (392)
T 1y42_X 196 RDTVKNKMTQGDGVSFAEFTYPIMQGWDWFELFYQQGVQMQIGGSDQYGNIISGLEVVKAARESEPDPQERKYVTPKTAL 275 (392)
T ss_dssp SHHHHHTTSSSSCCCHHHHHHHHHHHHHHHHHHHHHCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHSCCSGG
T ss_pred hhHHHHHhcCCCCcccHHHHHHHHHHHHHHHHhccCCccEEecCcchHhHHHHHHHHHHHHhhhcccccccccccccccc
Confidence 2 11112223567899999999999999987 699999999999999999999988743
Q ss_pred CceeEEecccccCCCCCCccCCCCCCeeeccC---CHHHHHHHHHhccCCCCCCCcchhhchhhhheecccCCCcceeee
Q psy5948 217 AKRIHFMNPMVPGLAGGKMSSSEEDSKIDLLD---APALVKKKLKKAFCEPGNVEDNGVLSFLKHVVFSLLKPGENLVIT 293 (549)
Q Consensus 217 ~~~~~l~~plL~~l~G~KMSKS~~~s~I~L~D---sp~~i~kKI~~A~td~~~~~~~~v~~~~k~~lf~~~~~~~~~~i~ 293 (549)
.+++++++|+|++++|+|||||.++ +|||+| +|+++++||+++ .|++|.+|++ +|+.++
T Consensus 276 ~~~~~l~~pll~~ldG~KMSKS~~n-aI~L~d~~tsp~~i~qki~~~-------~D~~v~~~l~--~ft~l~-------- 337 (392)
T 1y42_X 276 DECVGFTVPLLTDSSGAKFGKSAGN-AIWLDPYQTSVFDFYGYFVRR-------SDQEVENLLK--LFTFMP-------- 337 (392)
T ss_dssp GSCEEEECCCCBCTTCCBTTBCSSS-BCBSSTTTSCHHHHHHHHHTC-------CTTTHHHHHH--HHCCCC--------
T ss_pred CCccccccccCcCCchhhccCCCCC-eeeccCCCCCHHHHHHHHHcC-------CchhHHHHHH--HHHhCC--------
Confidence 5789999999999999999999874 999999 999999999983 4788888887 343222
Q ss_pred ecccCCCCCCCCCHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCchhhhhc
Q psy5948 294 RDENNGGNLNFSDYQSLEQVFAKQELHPADLKAAAEFYINRLLEPIRKKFE 344 (549)
Q Consensus 294 ~~~~~g~~~~~~~~eel~~~~~~g~l~~~dlK~~Lae~l~~~l~pir~~~~ 344 (549)
.+++++|+++|.+|. +++++|++||++|++++++.++..+
T Consensus 338 ----------~~ei~~l~~~~~~g~-~~~~~K~~LA~~v~~~lhg~~~~~~ 377 (392)
T 1y42_X 338 ----------ISEITKTMEEHIKDP-SKRVAQHTLAREVVTLVHGKQEASA 377 (392)
T ss_dssp ----------HHHHHHHHHHHHHCG-GGCHHHHHHHHHHHHHHHCHHHHHH
T ss_pred ----------hhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 368999999999976 9999999999999999999887665
No 36
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=100.00 E-value=5.9e-49 Score=439.63 Aligned_cols=286 Identities=21% Similarity=0.233 Sum_probs=244.1
Q ss_pred CCceEEEeecCCCccchhhhHHHHH-HHHHHHc--CCcEEEEEeCceeeecCCC-ChhHHHHHHHHHHHHHHHHHHHccC
Q psy5948 46 RDLKIYWGTATTGRPHIAYFVPMSK-IADFLRA--GCEVTILFADLHAYLDNMK-APWELLALRTKYYEESIKAMLESID 121 (549)
Q Consensus 46 ~~~~v~~Gi~PTG~lHIGn~~~~~~-l~~l~~~--G~~v~ilIaD~~a~~~~~~-~~~~~~~~~~~~~~~~i~~~l~a~G 121 (549)
.+..|+++- |||++||||++++++ ++.||+. |++++|+|||+||+++++. ..++..+....|+ ...|+|+|
T Consensus 381 ~~l~~~~~p-s~g~lHLGh~v~~~k~l~~~~~~~~g~~v~ilIaD~~A~i~d~~g~~~e~i~~~~~y~----~~~~~alG 455 (690)
T 3p0j_A 381 KPHACMWMP-ALLKVPLDVAEGMIKVTKDFIAAHPEGTVTLVLPDWSAVASDEITGVEKDISAALQVN----CALLKAYG 455 (690)
T ss_dssp SCEEEEECC-CCSSCBHHHHHHHHHHHHHHHHHCSSCEEEEEECTTHHHHTTCTTCCHHHHHHHHHHH----HHHHHHHT
T ss_pred CcceEEecC-CCCCcccchHHHHHHHHHHHHHHcCCCeEEEEEecchhhhCCCCCCCHHHHHHHHHHH----HHHHHhcC
Confidence 466788888 999999999999998 9999988 9999999999999999863 2233223233333 35678999
Q ss_pred CCCCeeEEEEccccccc--cccHHHHHHHHcccCHHHHHHhhHHHhhhccCCCcccchhhHHhhcccccccCcEEEeccc
Q psy5948 122 VPISKLKFVKGTDYQLS--KEYTLDVYRLSSVITEHDAKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFGGVD 199 (549)
Q Consensus 122 ldp~k~~i~~qS~~~~~--~~~~~~~~~l~~~~t~~~~k~~~~~~~~~~~~~~~~~~~YP~LqAaDil~~~~d~~~gG~D 199 (549)
+|+ +++|++||+|+.. .+||..++++++.+|..+++... ..+..++++|+||+|||||++.+++|+++||.|
T Consensus 456 ~d~-k~~fv~~S~~~~~~~~~~~~~vi~la~~~tl~r~~~~~-----~~~~~~i~~~~YPlmQaaDi~~l~aDi~~gG~D 529 (690)
T 3p0j_A 456 LPS-SVKIVTENEVILGNCDDFWVSVIGIARKNLLSHVEELY-----GGEVRNAGQVIAALMRVATALMLSVSHVISTSL 529 (690)
T ss_dssp CCT-TSEEEEHHHHHHHTHHHHHHHHHHHHTTSCHHHHHHHT-----TSCCSSHHHHHHHHHHHHHHHHTTCSEEEECST
T ss_pred CCc-CeEEEECCchhccchhhHHHHHHHHHHhhhHHHHHHHh-----CCCCcchHHHHHHHHHHhhhhccCCCEEecccc
Confidence 997 8999999999755 37899999999999999988753 235668999999999999999999999999999
Q ss_pred chhhHHHHHHhhhhcCCCceeEEecccccCCCC-CC-ccCCCCCCeeeccCCHHHHHHHHHhccCCCCCCCcchhhchhh
Q psy5948 200 QRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAG-GK-MSSSEEDSKIDLLDAPALVKKKLKKAFCEPGNVEDNGVLSFLK 277 (549)
Q Consensus 200 Q~~~~~~~r~l~~~~~~~~~~~l~~plL~~l~G-~K-MSKS~~~s~I~L~Dsp~~i~kKI~~A~td~~~~~~~~v~~~~k 277 (549)
|+++++++|+++++++ +++.++++++|+|+| +| ||||+++|+|+|+|+|++|++||++|||+|+ +++||+++|++
T Consensus 530 Q~~~~~LaRd~~~~~~--~~~~~~~~~~P~L~gp~~~~~~~s~~~~I~l~D~~~~i~~KI~kA~c~p~-ve~np~l~~~~ 606 (690)
T 3p0j_A 530 DGHINAFAREYTKERI--DCVQTLEGRIPALHRPGAAPAVLGADDVLYLDDNDMDIRRKIKKAYSAPN-EEANPVISVAQ 606 (690)
T ss_dssp TTTTTHHHHHHTTTCS--EEEECCCCSSCCSSCCCC-------CCSCBTTCCHHHHHHHHHHSCCCTT-CSCSHHHHHHH
T ss_pred cHHHHHHHHHHHHhcc--CcccccccccccCCCcccccCCCCCCCeeeccCCHHHHHHHHHHhcCCCC-CCCChHHHHHH
Confidence 9999999999999854 677778899999987 44 5677778899999999999999999999996 99999999999
Q ss_pred hheecccCCCcceeeeecccCCCCCCCCCHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCchhhhhcchHHH
Q psy5948 278 HVVFSLLKPGENLVITRDENNGGNLNFSDYQSLEQVFAKQELHPADLKAAAEFYINRLLEPIRKKFESKELK 349 (549)
Q Consensus 278 ~~lf~~~~~~~~~~i~~~~~~g~~~~~~~~eel~~~~~~g~l~~~dlK~~Lae~l~~~l~pir~~~~~~e~~ 349 (549)
|++++ ... |+|+|++++||+++|+++++|+++|.+|.+||+|||++|+++|+++|+|+|++|+.++-|
T Consensus 607 ~~~~~-~~~---~~i~r~~~~Gg~~~~~~~eel~~~y~~G~lhp~dlK~~la~~l~~~l~p~Re~~~~~~~~ 674 (690)
T 3p0j_A 607 HLLAQ-HGA---LSIERGEANGGNVSYNTPEALVADCGSGALHPADLKAAVLQLLLDRSAQARALLNGELKK 674 (690)
T ss_dssp HHHHH-HSC---EEECCCTTTTCCEEESSHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHHHHHHHTTTHH
T ss_pred HHhcc-CCc---eEEechhhhCCCCCccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 96654 343 999999999999999999999999999999999999999999999999999999955444
No 37
>1ntg_A Tyrrs, tyrosyl-tRNA synthetase; beta barrel, ligase; 2.21A {Homo sapiens} SCOP: b.40.4.4
Probab=100.00 E-value=4.1e-43 Score=327.87 Aligned_cols=152 Identities=61% Similarity=1.011 Sum_probs=144.0
Q ss_pred cCCCccccceeeeEEEEEecCCCCCceEEEEEEcCCCCCEEEEeCCccccccccCCCCEEEEEEeeccceecceecceee
Q psy5948 366 DIIAPHRLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCNLKPAKMRGIESAGMV 445 (549)
Q Consensus 366 ~~~~~~~~~i~vG~I~~v~~hp~adkL~v~~vd~G~~~~~~Ivsg~~~~~~~~~l~g~~v~v~~nlk~~k~~G~~SeGMl 445 (549)
++.+|++++||||+|++|++||+|||||+|+||+|++++||||||++|+|++|+|+|++|++++||+|+||||+.|+|||
T Consensus 3 ~~~df~kl~irVG~I~~~e~hP~AdkL~v~~VD~G~~~~rqIvsG~~n~~~~eel~G~~Vvvl~nlkp~klrGv~S~GMv 82 (172)
T 1ntg_A 3 EEVIPSRLDIRVGKIITVEKHPDADSLYVEKIDVGEAEPRTVVSGLVQFVPKEELQDRLVVVLCNLKPQKMRGVESQGML 82 (172)
T ss_dssp CCCCGGGSCEEEEEEEEEEECTTCSSCEEEEEECSSSSCEEEEESCTTTSCGGGTTTCEEEEECCBCCEEETTEEECCEE
T ss_pred cccCccEeCEEEEEEEEEEECCCCCccEEEEEEeCCCcEEEEEECCCCCCChHHHCCCEEEEEEeEcceeecceecCCEE
Confidence 57899999999999999999999999999999999877999999999999999999999999999999999999999998
Q ss_pred ecccccccCCCeeEEEeCCCCCCCCceEEecCCCCCCCCcCCCCChhhHhhhccceeeCCCeeEEecCceeEE
Q psy5948 446 LCASVEEEGNKKVEPLFVPPSSKAGDKIVVEGYETGAPDEILNPKKKVWEKLQVDLKTSSEGIAQWQGFNIYW 518 (549)
Q Consensus 446 lc~~~~~~~~~~~~~l~~p~~~~~G~~i~~~~~~~~~~~~~l~~kk~~~~~~~~~l~~~~~~~~~~~~~~~~~ 518 (549)
|||+.+++ ++.++|+.||+++++|+++.|+|++.++|+++++||||.||+++++|+|+++|+|+|+|.||+|
T Consensus 83 Lcs~~e~~-~~~v~il~~~~~~~~G~~v~~~g~~~~~p~~~l~~kkk~~e~~~~~l~t~~~~~a~~k~~~~~~ 154 (172)
T 1ntg_A 83 LCASIEGI-NRQVEPLDPPAGSAPGEHVFVKGYEKGQPDEELKPKKKVFEKLQADFKISEECIAQWKQTNFMT 154 (172)
T ss_dssp CEEEEESS-SEEEEECBCCBTCCTTCEEEETTCSSCCCCSSBCGGGCHHHHHHTTEEECTTSBEEETTEEEEE
T ss_pred eEeccccc-CCCeEEEECCCCCCCCCEEEeCCcCCCCCccccCcchhhHHhhCCCcEECCCCEEEECCEEEEe
Confidence 89988763 3467899999999999999999996668999999999999999999999999999999999977
No 38
>1fl0_A Endothelial-monocyte activating polypeptide II; RNA-binding domain, OB-fold, tRNA synthetase complex, RNA binding protein; 1.50A {Homo sapiens} SCOP: b.40.4.4 PDB: 1e7z_A 1euj_A
Probab=100.00 E-value=9.7e-41 Score=311.23 Aligned_cols=146 Identities=51% Similarity=0.860 Sum_probs=138.4
Q ss_pred CCccccceeeeEEEEEecCCCCCceEEEEEEcCCCCCEEEEeCCccccccccCCCCEEEEEEeeccceecceecceeeec
Q psy5948 368 IAPHRLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCNLKPAKMRGIESAGMVLC 447 (549)
Q Consensus 368 ~~~~~~~i~vG~I~~v~~hp~adkL~v~~vd~G~~~~~~Ivsg~~~~~~~~~l~g~~v~v~~nlk~~k~~G~~SeGMllc 447 (549)
.+|++++||||+|++|++||+|||||+|+||+|++++||||||++|+|+++++.|+++++++||+|+||||+.|+|||||
T Consensus 1 ~df~kldirVG~I~~~e~hP~AdkL~v~~VD~G~~~~rqIV~G~~n~v~~a~lggk~v~~~~nlkp~klrGv~SeGMvLc 80 (171)
T 1fl0_A 1 IDVSRLDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNLKPAKMRGVLSQAMVMC 80 (171)
T ss_dssp CCGGGSCEEEEEEEEEEEETTEEEEEEEEEECSSSSCEEEEECCTTTSCGGGGTTEEEEEECCSCCEESSSCEECCEECE
T ss_pred CCccEEeEEEEEEEEEEECCCCCccEEEEEEcCCCcEEEEEECCCceEcchhcCCEEEcCceEEeeEEEccEeccCEEEE
Confidence 47999999999999999999999999999999987799999999999999999999998899999999999999999889
Q ss_pred ccccccCCCeeEEEeCCCCCCCCceEEecCCCCCCCCcCCCCChhhHhhhccceeeCCCeeEEecCceeEE
Q psy5948 448 ASVEEEGNKKVEPLFVPPSSKAGDKIVVEGYETGAPDEILNPKKKVWEKLQVDLKTSSEGIAQWQGFNIYW 518 (549)
Q Consensus 448 ~~~~~~~~~~~~~l~~p~~~~~G~~i~~~~~~~~~~~~~l~~kk~~~~~~~~~l~~~~~~~~~~~~~~~~~ 518 (549)
|+.+ +.+++++||+++++|+++.|+|++. +|+.+++||||.||+++++|+|+++|+|+|+|.||++
T Consensus 81 s~~~----~~~~il~~~~~~~~G~~v~~~g~~~-~p~~~l~~kkk~~e~~~~~l~t~~~~va~~k~~~~~~ 146 (171)
T 1fl0_A 81 ASSP----EKIEILAPPNGSVPGDRITFDAFPG-EPDKELNPKKKIWEQIQPDLHTNDECVATYKGVPFEV 146 (171)
T ss_dssp EEET----TEEEECBCCTTCCTTCBCCCTTSCC-CCCSSCCTTTCTHHHHGGGEEECTTSBEEETTEECEE
T ss_pred EecC----CCEEEEECCCCCCCCCEEEeCCCCC-CCccccCchhhhHHhhCCCcEECCCeEEEECCEEEEE
Confidence 9874 3578999999999999999999986 8999999999999999999999999999999999965
No 39
>3ers_X TRNA-binding protein YGJH; oligonucleotide-oligosaccharide binding fold; 1.87A {Escherichia coli}
Probab=99.96 E-value=1.6e-30 Score=228.61 Aligned_cols=108 Identities=40% Similarity=0.636 Sum_probs=97.9
Q ss_pred CCccccceeeeEEEEEecCCCCCceEEEEEEcCCCCCEEEEeCCccccccccCCCCEEEEEEeeccceecceecceeeec
Q psy5948 368 IAPHRLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCNLKPAKMRGIESAGMVLC 447 (549)
Q Consensus 368 ~~~~~~~i~vG~I~~v~~hp~adkL~v~~vd~G~~~~~~Ivsg~~~~~~~~~l~g~~v~v~~nlk~~k~~G~~SeGMllc 447 (549)
.+|+++|||||+|++|++||+|||||+|+||+|++ .++++||+.++|++++|+|++|++++||||+||||+.|+|||||
T Consensus 7 ddF~kvdirVG~I~~~e~hp~AdKL~~~~VD~G~~-~~~iv~g~~~~y~pe~LvGk~v~~v~Nlkp~kirGv~S~GMll~ 85 (118)
T 3ers_X 7 ADFARLEMRVGKIVEVKRHENADKLYIVQVDVGQK-TLQTVTSLVPYYSEEELMGKTVVVLCNLQKAKMRGETSECMLLC 85 (118)
T ss_dssp HHHHTSCEEEEEEEEEECCTTCSSCEEEEEECSSS-EEEEEECCTTTSCHHHHTTCEEEEECCSCCEEETTEEECCEECE
T ss_pred HHceeeeEEEEEEEEEEEcCCCCCcEEEEEEcCCc-EeeEEEEeehhcCHhHhcCCEEEeecccccceECCeeceEEEEE
Confidence 47999999999999999999999999999999995 68999999999999999999999999999999999999999988
Q ss_pred ccccccCCCeeEEEeCCCCCCCCceEEecCC
Q psy5948 448 ASVEEEGNKKVEPLFVPPSSKAGDKIVVEGY 478 (549)
Q Consensus 448 ~~~~~~~~~~~~~l~~p~~~~~G~~i~~~~~ 478 (549)
+..+++ ..+.++.|+.++|+|+||+|+-.
T Consensus 86 a~~~d~--~~~~ll~p~~~~~~G~rv~~e~~ 114 (118)
T 3ers_X 86 AETDDG--SESVLLTPERMMPAGVRVVLDHH 114 (118)
T ss_dssp EECTTS--SCEEECCCSSCCCTTCBCCCC--
T ss_pred EEcCCC--CcEEEEcCCCCCCCCCEEEEeee
Confidence 776653 45678888999999999988753
No 40
>3g48_A Chaperone CSAA; structural genomics, niaid structural centers for infectious diseases, center for structural GENO infectious diseases; 1.50A {Bacillus anthracis} SCOP: b.40.4.4
Probab=99.96 E-value=8.9e-30 Score=221.97 Aligned_cols=105 Identities=22% Similarity=0.302 Sum_probs=97.1
Q ss_pred cCCCccccceeeeEEEEEecCCCCCc-eEEEEEEcCCCCCEEEEeCCccccccccCCCCEEEEEEeeccceecceeccee
Q psy5948 366 DIIAPHRLDIRVGKIVEVSRHPDAEA-LYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCNLKPAKMRGIESAGM 444 (549)
Q Consensus 366 ~~~~~~~~~i~vG~I~~v~~hp~adk-L~v~~vd~G~~~~~~Ivsg~~~~~~~~~l~g~~v~v~~nlk~~k~~G~~SeGM 444 (549)
.-.+|+++|||||+|++|++||+||| ||+|+||+|++++||||||++++|.+++|+|++|++++||||+||||+.|+||
T Consensus 6 ~~ddF~kldirVG~I~~~e~hp~adkpL~~~~Vd~G~~~~~qIv~G~~~~~~~~~l~G~~v~~~~nlkp~kirGv~S~GM 85 (112)
T 3g48_A 6 NFEDFLTLDLRIGTVTHAEEFKEARVPAIRLEIDFGELGMKQSSAQITKRYNPEDLIGQQIVAVVNFPPKRVAGFKSEVL 85 (112)
T ss_dssp CHHHHHTCCEEEEEEEEEEEEEETTEEEEEEEEECGGGCEEEEEECCTTTCCHHHHTTCEEEEECCSCCEEETTEEECSE
T ss_pred CHHHhhceEEEEEEEEEEEECCCCCCeEEEEEEEcCCCcEEEEEeCCccccChhHcCCCEEEEEccccceeECCeecCcE
Confidence 34679999999999999999999999 99999999986789999999999999999999999999999999999999999
Q ss_pred eecccccccCCCeeEEEeCCCCCCCCceE
Q psy5948 445 VLCASVEEEGNKKVEPLFVPPSSKAGDKI 473 (549)
Q Consensus 445 llc~~~~~~~~~~~~~l~~p~~~~~G~~i 473 (549)
|||+.++. +.+++++||.++++|++|
T Consensus 86 l~s~~~~~---~~~~ll~p~~~~~~G~~i 111 (112)
T 3g48_A 86 VLGGVPEA---GDVVLLQPNMELPNGTKI 111 (112)
T ss_dssp ECEEEEET---TEEEECCCSSCCCTTCBC
T ss_pred EeEeecCC---CCEEEEeCCCCCCCCCCc
Confidence 97665543 468999999999999987
No 41
>2cwp_A Metrs related protein; structural GEN riken structural genomics/proteomics initiative, RSGI; 2.10A {Pyrococcus horikoshii}
Probab=99.96 E-value=3.9e-29 Score=218.27 Aligned_cols=103 Identities=26% Similarity=0.494 Sum_probs=94.8
Q ss_pred CCCccccceeeeEEEEEecCCCCCceEEEEEEcCCCCCEEEEeCCccccccccCCCCEEEEEEeeccceecceecceeee
Q psy5948 367 IIAPHRLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCNLKPAKMRGIESAGMVL 446 (549)
Q Consensus 367 ~~~~~~~~i~vG~I~~v~~hp~adkL~v~~vd~G~~~~~~Ivsg~~~~~~~~~l~g~~v~v~~nlk~~k~~G~~SeGMll 446 (549)
-.+|+++++|||+|++|++||+|||||+|+||+|+ ++||||||++|+|.+++|+|++|++++||||+||||+.|+||+|
T Consensus 9 ~~df~k~~lrVG~I~~~e~hp~adkL~~~~VD~G~-~~rqIV~G~~n~~~~~~l~G~~v~~~~nlkp~klrGv~S~GMl~ 87 (112)
T 2cwp_A 9 VDEFWKFQMKVGLVKKAEKIKRTKKLIKLIVDFGN-EERTIVTGIADQIPPEELEGKKFIFVVNLKPKKFSGVESQGMLI 87 (112)
T ss_dssp HHHHHTSCEEEEEEEEEEECTTCSSCEEEEEECSS-CEEEEEECCTTTSCGGGTTTCEEEEECSSCCEEETTEEECSEEC
T ss_pred HHHhhcCCEEEEEEEEEEECCCCCccEEEEEEeCC-eEEEEEECCccccChhhcCCCEEECeEEEccceeCCEecccEEE
Confidence 45799999999999999999999999999999998 68999999999999999999999999999999999999999996
Q ss_pred cccccccCCCeeEEEeCCCCCCCCceE
Q psy5948 447 CASVEEEGNKKVEPLFVPPSSKAGDKI 473 (549)
Q Consensus 447 c~~~~~~~~~~~~~l~~p~~~~~G~~i 473 (549)
|+..+. +.+.++.||+++++|+++
T Consensus 88 sa~~~~---~~~~il~~~~~~~~G~~i 111 (112)
T 2cwp_A 88 LAETED---GKVYLIPVPEEVPVGARV 111 (112)
T ss_dssp CEECTT---SCEECCBCCTTSCTTCEE
T ss_pred EeecCC---CcEEEEECCCCCCCCCCC
Confidence 665432 457899999999999987
No 42
>1gd7_A CSAA protein; oligonucleotide-binding fold, functional dimer, hydrophobic cavity, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: b.40.4.4
Probab=99.96 E-value=1.7e-29 Score=219.42 Aligned_cols=103 Identities=27% Similarity=0.348 Sum_probs=94.6
Q ss_pred CCccccceeeeEEEEEecCCCCCce-EEEEEEcCCCCCEEEEeCCccccccccCCCCEEEEEEeeccceecceecceeee
Q psy5948 368 IAPHRLDIRVGKIVEVSRHPDAEAL-YVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCNLKPAKMRGIESAGMVL 446 (549)
Q Consensus 368 ~~~~~~~i~vG~I~~v~~hp~adkL-~v~~vd~G~~~~~~Ivsg~~~~~~~~~l~g~~v~v~~nlk~~k~~G~~SeGMll 446 (549)
.+|+++++|||+|++|++||+|||| |+|+||+|++++||||||++|+|.+++|+|++|++++||||+||||+.|+||+|
T Consensus 5 ~df~k~di~VG~I~~~e~hp~adkL~~~~~Vd~G~~~~rqIv~G~~n~~~~~~l~G~~v~~~~nlkp~klrGv~S~GMl~ 84 (109)
T 1gd7_A 5 EAFQILDLRVGRVLRAEPHEKARKPSYKLWVDLGPLGVKQSSAQITELYRPEDLVGRLVVCAVNLGAKRVAGFLSEVLVL 84 (109)
T ss_dssp HHHHHSCEEEEEEEEEEECTTCSSCCEEEEEECGGGCEEEEEECCTTTCCHHHHTTCEEEEECSSCCEEETTEEECSEEC
T ss_pred HHhhccCEEEEEEEEEEECCCCccccEEEEEEcCCCcEEEEEECCccccChhhcCCCEEEeeEecCceEeccEeecCEEE
Confidence 4689999999999999999999999 999999998668999999999999999999999999999999999999999996
Q ss_pred cccccccCCCeeEEEeCCCCCCCCceE
Q psy5948 447 CASVEEEGNKKVEPLFVPPSSKAGDKI 473 (549)
Q Consensus 447 c~~~~~~~~~~~~~l~~p~~~~~G~~i 473 (549)
|+.++. +.+.++.||+++++|+++
T Consensus 85 sa~~~~---~~i~~l~~~~~~~~G~~i 108 (109)
T 1gd7_A 85 GVPDEA---GRVVLLAPDREVPLGGKV 108 (109)
T ss_dssp EEECTT---SCEEEEEESSCCCTTCBC
T ss_pred EeecCC---CcEEEEeCCCCCCCCCCC
Confidence 665432 458889999999999986
No 43
>2nzh_A Protein CSAA; beta barrel, oligonucleotide/oligosaccharide binding fold, H chaperone; 1.90A {Bacillus subtilis} PDB: 2nzo_A
Probab=99.95 E-value=4.2e-29 Score=218.41 Aligned_cols=104 Identities=27% Similarity=0.364 Sum_probs=94.9
Q ss_pred CCCccccceeeeEEEEEecCCCCCce-EEEEEEcCCC-CCEEEEeCCccccccccCCCCEEEEEEeeccceecceeccee
Q psy5948 367 IIAPHRLDIRVGKIVEVSRHPDAEAL-YVEKIDLGEE-NPRTIVSGLVNYVKEGDMANRLVVVLCNLKPAKMRGIESAGM 444 (549)
Q Consensus 367 ~~~~~~~~i~vG~I~~v~~hp~adkL-~v~~vd~G~~-~~~~Ivsg~~~~~~~~~l~g~~v~v~~nlk~~k~~G~~SeGM 444 (549)
..+|++++||||+|++|++||+|||| |+|+||+|++ ++||||||++|+|.+++|.|++|++++||||+||||+.|+||
T Consensus 7 ~~df~k~~lrVG~I~~~e~hp~adkL~~~~~Vd~G~~~~~rqIv~G~~n~~~~~~l~G~~v~~~~nlkp~kirGv~S~GM 86 (113)
T 2nzh_A 7 IDDFEKLDIRTGTIVKAEEFPEARVPAIKLVIDFGTEIGIKQSSAQITKRYKPEGLINKQVIAVVNFPPRRIAGFKSEVL 86 (113)
T ss_dssp HHHHHHCCEEEEEEEEEEEETTSSSCEEEEEEECHHHHCEEEEEECCTTTCCHHHHTTCEEEEETTSCCEEETTEEECSE
T ss_pred HHHhhcCCEEEEEEEEEEECCCCCcccEEEEEEeCCCCcEEEEEECCCcccCHHHhCCCEEEeeEEEcceEECCEEeCCE
Confidence 35799999999999999999999999 9999999974 689999999999999999999999999999999999999999
Q ss_pred eecccccccCCCeeEEEeCCCCCCCCceE
Q psy5948 445 VLCASVEEEGNKKVEPLFVPPSSKAGDKI 473 (549)
Q Consensus 445 llc~~~~~~~~~~~~~l~~p~~~~~G~~i 473 (549)
|||+..+. +.+.++.||+++++|+++
T Consensus 87 l~sa~~~~---~~i~ll~~~~~~~~G~~i 112 (113)
T 2nzh_A 87 VLGGIPGQ---GDVVLLQPDQPVPNGTKI 112 (113)
T ss_dssp ECEEEEET---TEEEEEEESSCCCTTCEE
T ss_pred EEEeecCC---CCEEEEECCCCCCCCCCC
Confidence 96655432 457889999999999987
No 44
>2q2i_A AGR_C_4014P, secretion chaperone; beta barrel, OB fold, homodimer, protein secretio; 1.55A {Agrobacterium tumefaciens str}
Probab=99.95 E-value=8.2e-29 Score=217.55 Aligned_cols=104 Identities=23% Similarity=0.296 Sum_probs=94.9
Q ss_pred CCCccccceeeeEEEEEecCCCCCce-EEEEEEcCCC-CCEEEEeCCccccccccCCCCEEEEEEeeccceecceeccee
Q psy5948 367 IIAPHRLDIRVGKIVEVSRHPDAEAL-YVEKIDLGEE-NPRTIVSGLVNYVKEGDMANRLVVVLCNLKPAKMRGIESAGM 444 (549)
Q Consensus 367 ~~~~~~~~i~vG~I~~v~~hp~adkL-~v~~vd~G~~-~~~~Ivsg~~~~~~~~~l~g~~v~v~~nlk~~k~~G~~SeGM 444 (549)
-.+|+++++|||+|++|++||+|||| |+|+||+|++ ++||||||++|+|.+++|+|++|++++||||+||||+.|+||
T Consensus 10 ~~df~k~~lrVG~I~~~e~hp~adkL~~~~~VD~G~~~~~rqIv~G~~n~~~~~~l~G~~v~~~~nlkp~kirGv~S~GM 89 (116)
T 2q2i_A 10 YADFEKVDIRVGTIVEAVPFPEARKPAIKVKIDFGPEIGIKKSSAQITVHYTPESLVGRQVLGVVNFPPRQIGPFRSEVL 89 (116)
T ss_dssp HHHHHTSCEEEEEEEEEEECTTSSSCCEEEEEECHHHHCEEEEEESCTTTCCHHHHTTCEEEEECCSCCEEETTEEECCE
T ss_pred HHHhhcCCEEEEEEEEEEECCCCCCccEEEEEEeCCCCcEEEEEECCcCccChhhcCCCEEECceEEcceEECCEEeCCE
Confidence 45789999999999999999999999 9999999974 689999999999999999999999999999999999999999
Q ss_pred eecccccccCCCeeEEEeCCCCCCCCceE
Q psy5948 445 VLCASVEEEGNKKVEPLFVPPSSKAGDKI 473 (549)
Q Consensus 445 llc~~~~~~~~~~~~~l~~p~~~~~G~~i 473 (549)
|||+.++. +.+.++.||+++++|+++
T Consensus 90 l~sa~~~~---~~i~ll~p~~~~~~G~~i 115 (116)
T 2q2i_A 90 TLGFADAN---GDIVLAAVERPVPNGEKM 115 (116)
T ss_dssp ECEEECTT---SCEEEEEESSCCCTTCBC
T ss_pred EEEeecCC---CcEEEEeCCCCCCCCCCC
Confidence 96665432 457889999999999986
No 45
>1pyb_A Methionyl-tRNA synthetase beta subunit; oligonucleotide, oligosaccharide-binding fold, OB-fold, beta-barrel, RNA binding protein; 2.50A {Aquifex aeolicus} SCOP: b.40.4.4
Probab=99.95 E-value=1.7e-28 Score=214.10 Aligned_cols=102 Identities=32% Similarity=0.555 Sum_probs=94.4
Q ss_pred CCCccccceeeeEEEEEecCCCCCceEEEEEEcCCCCCEEEEeCCccccccccCCCCEEEEEEeeccceecceecceeee
Q psy5948 367 IIAPHRLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCNLKPAKMRGIESAGMVL 446 (549)
Q Consensus 367 ~~~~~~~~i~vG~I~~v~~hp~adkL~v~~vd~G~~~~~~Ivsg~~~~~~~~~l~g~~v~v~~nlk~~k~~G~~SeGMll 446 (549)
-.+|+++++|||+|++|++||+|||||+|+||+|+ ++||||||++|+|.+++|.|++|++++||+|+||||+.|+||||
T Consensus 9 ~~df~k~~lrVG~I~~~e~hp~adkL~~~~Vd~G~-~~rqIv~G~~n~~~~~al~G~~v~~~~nlkp~klrGv~S~GMl~ 87 (111)
T 1pyb_A 9 IEDFLKVDLRVAKVLSAERVEGSEKLLKLTLSLGD-EERTVVAGIAKYYTPEELVGKKIVIVANLKPRKIFGIESQGMIL 87 (111)
T ss_dssp HHHHHHSCEEEEEEEEEECCSSCSCCEEEEEEETT-EEEEEEECCTTTSCHHHHTTCEEEEETTSCSSCTTSCCBSSEEC
T ss_pred HHHhccCCEEEEEEEEEEECCCCCccEEEEEEeCC-cEEEEEECCccccCccccCCCEEECcEeecceEEccEeeccEEE
Confidence 45799999999999999999999999999999998 68999999999999999999999999999999999999999995
Q ss_pred cccccccCCCeeEEEeCCCCCCCCceE
Q psy5948 447 CASVEEEGNKKVEPLFVPPSSKAGDKI 473 (549)
Q Consensus 447 c~~~~~~~~~~~~~l~~p~~~~~G~~i 473 (549)
|+.. . +..+|++||+++++|+++
T Consensus 88 sa~e-~---~~~~il~~~~~~~~G~~v 110 (111)
T 1pyb_A 88 AASD-G---ENLSVIVPDRDVKEGAKL 110 (111)
T ss_dssp EEEC-S---SCEEEEEESSCCCTTEEC
T ss_pred Eecc-C---CceEEEECCCCCCCCCCC
Confidence 5544 3 467899999999999986
No 46
>1mkh_A Metrs;, C-terminal domain of methionyl-tRNA synthetase; beta barrel, dimerization domain, ligase; 2.01A {Pyrococcus abyssi} SCOP: b.40.4.4
Probab=99.95 E-value=2.3e-28 Score=211.87 Aligned_cols=102 Identities=47% Similarity=0.774 Sum_probs=92.7
Q ss_pred CCCccccceeeeEEEEEecCCCCCceEEEEEEcCCCCCEEEEeCCccccccccCCCCEEEEEEeeccceecceecceeee
Q psy5948 367 IIAPHRLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCNLKPAKMRGIESAGMVL 446 (549)
Q Consensus 367 ~~~~~~~~i~vG~I~~v~~hp~adkL~v~~vd~G~~~~~~Ivsg~~~~~~~~~l~g~~v~v~~nlk~~k~~G~~SeGMll 446 (549)
-.+|+++++|||+|++|++||+|||||+|+||+|+ ++||||||++|+|.+++|.|++|++++||+|+||||+.|+||+|
T Consensus 5 ~~df~k~dl~VG~I~~~e~hp~adkL~~~~Vd~G~-~~rqIv~G~~n~~~~~al~G~~v~~~~nlkp~klrGv~S~GMl~ 83 (107)
T 1mkh_A 5 FDDFAKLDLRVGKIIEVKDHPNADKLYVVKVDLGD-EVRTLVAGLKKYYKPEELLNRYVVVVANLEPKKLRGIGSQGMLL 83 (107)
T ss_dssp HHHHHTSCEEEEEEEEEEECTTCSSCEEEEEECSS-CEEEEEECCTTTCCHHHHTTCEEEEETTSCCEEC-CCEECCCBC
T ss_pred HHHhhccCEEEEEEEEEEECCCCCccEEEEEEeCC-eEEEEEeCCccccChhhcCCCEEECCeeEcceEEcCeeeccEEE
Confidence 35789999999999999999999999999999998 58999999999999999999999999999999999999999996
Q ss_pred cccccccCCCeeEEEeCCCCCCCCceE
Q psy5948 447 CASVEEEGNKKVEPLFVPPSSKAGDKI 473 (549)
Q Consensus 447 c~~~~~~~~~~~~~l~~p~~~~~G~~i 473 (549)
|+. + ++.+.++.||+++++|+++
T Consensus 84 s~~-~---~~gi~~l~p~~~~~~G~~i 106 (107)
T 1mkh_A 84 AAD-D---GERVALLMPDKEVKLGAKV 106 (107)
T ss_dssp EEE-C---SSCEEECCCSSCCCTTCEE
T ss_pred Ecc-C---CCcEEEEeCCCCCCCCCCC
Confidence 663 2 2567888999999999987
No 47
>2q2h_A AGR_C_4014P, secretion chaperone, phage-display derived peptid; beta barrel, OB fold, homodimer, protein secretio; HET: CIT; 1.65A {Agrobacterium tumefaciens str}
Probab=99.95 E-value=3.2e-28 Score=217.55 Aligned_cols=104 Identities=23% Similarity=0.296 Sum_probs=95.0
Q ss_pred CCCccccceeeeEEEEEecCCCCCce-EEEEEEcCCC-CCEEEEeCCccccccccCCCCEEEEEEeeccceecceeccee
Q psy5948 367 IIAPHRLDIRVGKIVEVSRHPDAEAL-YVEKIDLGEE-NPRTIVSGLVNYVKEGDMANRLVVVLCNLKPAKMRGIESAGM 444 (549)
Q Consensus 367 ~~~~~~~~i~vG~I~~v~~hp~adkL-~v~~vd~G~~-~~~~Ivsg~~~~~~~~~l~g~~v~v~~nlk~~k~~G~~SeGM 444 (549)
..+|++++||||+|++|++||+|||| |+|+||+|++ ++||||||++|+|.+++|.|++|++++||||+||||+.|+||
T Consensus 25 ~~df~k~~lrVG~I~~~e~hP~AdkL~~v~~VD~G~~~~~rqIV~G~~n~~~p~al~G~~v~~~~nlkp~kirGv~SeGM 104 (131)
T 2q2h_A 25 YADFEKVDIRVGTIVEAVPFPEARKPAIKVKIDFGPEIGIKKSSAQITVHYTPESLVGRQVLGVVNFPPRQIGPFRSEVL 104 (131)
T ss_dssp HHHHHTSCEEEEEEEEEEECTTCSSCCEEEEEECHHHHCEEEEEESCTTTCCHHHHTTCEEEEECCSCCEEETTEEECCE
T ss_pred HHHhhccCEEEEEEEEEEECCCCCcccEEEEEEECCCCcEEEEEECCCcccChhhcCCCEEECceEEcceEECCEEeCcE
Confidence 45789999999999999999999999 9999999974 689999999999999999999999999999999999999999
Q ss_pred eecccccccCCCeeEEEeCCCCCCCCceE
Q psy5948 445 VLCASVEEEGNKKVEPLFVPPSSKAGDKI 473 (549)
Q Consensus 445 llc~~~~~~~~~~~~~l~~p~~~~~G~~i 473 (549)
|||+.++. +.+.++.||+++++|+++
T Consensus 105 l~sa~~~~---~gi~lL~p~~~~~~G~~i 130 (131)
T 2q2h_A 105 TLGFADAN---GDIVLAAVERPVPNGEKM 130 (131)
T ss_dssp ECEEECTT---SCEEEEEESSCCCTTCBC
T ss_pred EEEeecCC---CcEEEEeCCCCCCCCCCC
Confidence 96665432 457889999999999986
No 48
>1pxf_A Hypothetical protein YGJH; oligonucleotide-oligosaccharide binding fold, OB fold, beta- barrel; 1.87A {Escherichia coli} PDB: 3ers_X
Probab=99.95 E-value=2.3e-28 Score=213.02 Aligned_cols=105 Identities=41% Similarity=0.648 Sum_probs=95.2
Q ss_pred CCCccccceeeeEEEEEecCCCCCceEEEEEEcCCCCCEEEEeCCccccccccCCCCEEEEEEeeccceecceecceeee
Q psy5948 367 IIAPHRLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCNLKPAKMRGIESAGMVL 446 (549)
Q Consensus 367 ~~~~~~~~i~vG~I~~v~~hp~adkL~v~~vd~G~~~~~~Ivsg~~~~~~~~~l~g~~v~v~~nlk~~k~~G~~SeGMll 446 (549)
-.+|++++||||+|++|++||+|||||+|+||+|+ +.+|||||+..++++++|.|++|++++||+|+||||+.|+||||
T Consensus 6 ~~df~k~dlrVG~I~~~e~hp~adkL~v~~Vd~G~-~~~qiv~g~a~~~~~~~l~G~~v~~~~nikp~klrGv~S~GMlL 84 (111)
T 1pxf_A 6 YADFARLEMRVGKIVEVKRHENADKLYIVQVDVGQ-KTLQTVTSLVPYYSEEELMGKTVVVLCNLQKAKMRGETSECMLL 84 (111)
T ss_dssp HHHHHHSCEEEEEEEEEECCTTCTTCCEEEEEETT-EEEEEECCCCTTSHHHHHTTCEEEEETTCSCCCBTTBCCCCCBC
T ss_pred HHHhhcccEEEEEEEEEEECCCCCeEEEEEEEeCC-CceEEEEeccCcccchhcCCCEEEEEEEEecccCCCEecceEEE
Confidence 45799999999999999999999999999999997 57999999877789999999999999999999999999999999
Q ss_pred cccccccCCCeeEEEeCCCCCCCCceEE
Q psy5948 447 CASVEEEGNKKVEPLFVPPSSKAGDKIV 474 (549)
Q Consensus 447 c~~~~~~~~~~~~~l~~p~~~~~G~~i~ 474 (549)
|+..+++ ..+.++.|+.++|+|++|.
T Consensus 85 ~a~~ed~--~~~~l~~p~~~~~~G~~vv 110 (111)
T 1pxf_A 85 CAETDDG--SESVLLTPERMMPAGVRVV 110 (111)
T ss_dssp EEECTTS--CCEEECCCSSCCCTTCBCC
T ss_pred EecccCC--CcEEEEcCCCCCCCCCEec
Confidence 9988753 3566788888899999974
No 49
>3bu2_A Putative tRNA-binding protein; structural genomics, PSI-2, protein structure initiative; 2.70A {Staphylococcus saprophyticus subsp}
Probab=99.90 E-value=3.4e-24 Score=203.68 Aligned_cols=95 Identities=28% Similarity=0.414 Sum_probs=87.2
Q ss_pred ccceeeeEEEEEecCCCCCceEEEEEEcCCCCCEEEEeCCccccccccCCCCEEEEE---------Eeeccceecceecc
Q psy5948 372 RLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVL---------CNLKPAKMRGIESA 442 (549)
Q Consensus 372 ~~~i~vG~I~~v~~hp~adkL~v~~vd~G~~~~~~Ivsg~~~~~~~~~l~g~~v~v~---------~nlk~~k~~G~~Se 442 (549)
..++|||+|++|++||+||||++|+||+|+ ++||||||++|+. .|++|+++ +||||+||||+.|+
T Consensus 90 ~~~vvVG~V~~~e~hP~ADkL~v~~VdvG~-~~~qIV~Ga~n~~-----~G~kVvva~~Ga~lp~g~nIk~~KlrGv~S~ 163 (199)
T 3bu2_A 90 TPKFVVGYVETKDKHPDADKLSVLSVDVAT-EKLQIVCGAPNVE-----AGQKVVVAKVGAVMPSGMVIKDAELRGVASS 163 (199)
T ss_dssp CCSEEEEEEEEEEECTTTSSCEEEEEECSS-CEEEEEECCTTCC-----TTCEEEEECTTCBCTTSCBCCEEEETTEEEE
T ss_pred CCCeEEEEEEEEEECCCCCEEEEEEEEeCC-EEEEEEeCCchhh-----CCCEEEEEecCCCccCCceEeeeEEcCceec
Confidence 368999999999999999999999999995 6899999999987 89999999 89999999999999
Q ss_pred eeeecccccccCCC---eeEEEeCCCCCCCCceE
Q psy5948 443 GMVLCASVEEEGNK---KVEPLFVPPSSKAGDKI 473 (549)
Q Consensus 443 GMllc~~~~~~~~~---~~~~l~~p~~~~~G~~i 473 (549)
||| ||..|+|+.+ +.+|+++|+++++|+++
T Consensus 164 GMl-cSa~ELGl~~~~~~~gI~~l~~~~~~G~~v 196 (199)
T 3bu2_A 164 GMI-CSMKELGLPNAPQEKGIMVLSDDYTVGQSF 196 (199)
T ss_dssp SEE-CCTTTTTCSSCBSCCSCCEECTTSCTTSBS
T ss_pred cEE-eehhhcCCCcccCCCeEEECCCCCCCCCcc
Confidence 999 8888887755 45689999999999987
No 50
>2e8g_A Hypothetical protein PH0536; oligonucleotide/oligosaccharide-binding fold, alpha-helices bundle, structural genomics, NPPSFA; 1.70A {Pyrococcus horikoshii}
Probab=99.89 E-value=1.3e-23 Score=204.34 Aligned_cols=111 Identities=30% Similarity=0.377 Sum_probs=90.4
Q ss_pred CCCccccceeeeEEEEEecCCCCCceEEEEEEcCCCCCEEEEeCCccccccccCCCCEEEEEEeeccceecceecceeee
Q psy5948 367 IIAPHRLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCNLKPAKMRGIESAGMVL 446 (549)
Q Consensus 367 ~~~~~~~~i~vG~I~~v~~hp~adkL~v~~vd~G~~~~~~Ivsg~~~~~~~~~l~g~~v~v~~nlk~~k~~G~~SeGMll 446 (549)
..+|.+++||||+|++|++||+|||||+|+||+|+ ++||||||++||. .| .+++++||+|++|||+.|+||+|
T Consensus 130 ~~~f~kldirVGkIl~ve~hP~AdKL~v~~VD~G~-~~rqIV~Ga~n~~-----~G-~vVvVAnLpp~klrGv~SeGMlc 202 (241)
T 2e8g_A 130 NDPVIAVDIVVGEVMSVGKHPSADRLLVTNVNIGE-RAVTVVTNDLTVK-----EG-NRVAVALLPPRNFFGIVSEGMFL 202 (241)
T ss_dssp CCGGGGSCEEEEEEEEEEECTTCTTCEEEEEECSS-CEEEEEESCTTCC-----TT-CEEEEECCCCEEETTEEECCEEC
T ss_pred cCcccccCEEEEEEEEEEECCCCCccEEEEEEeCC-ceEEEEECCcccc-----CC-CEEEEEECCCcccCCcccCcEEe
Confidence 45799999999999999999999999999999998 5899999999976 47 56678999999999999999995
Q ss_pred cccccccCCCeeEEEeCCCCCCCCceEEecCCCCCCCCcCCCCChhhHhhhcc
Q psy5948 447 CASVEEEGNKKVEPLFVPPSSKAGDKIVVEGYETGAPDEILNPKKKVWEKLQV 499 (549)
Q Consensus 447 c~~~~~~~~~~~~~l~~p~~~~~G~~i~~~~~~~~~~~~~l~~kk~~~~~~~~ 499 (549)
|+ .+ ++. .. +.|.. ..++.+.|..+++||||+||+++.
T Consensus 203 sa-~E-gl~------~~----~~G~I---~~Lp~~~p~~~lnpkkk~~e~~~~ 240 (241)
T 2e8g_A 203 GA-GE-GVL------KN----VKGEI---GGLPKGIPLEALNETRNAVEAFLK 240 (241)
T ss_dssp EE-TT-EEC------CB----CBSCT---TSCCBSCCGGGGHHHHHHHHHHHC
T ss_pred EC-cc-CCC------CC----CCCcE---EECCCCCchhhcCchhhHHHHHhc
Confidence 55 43 311 11 22422 234556888999999999999874
No 51
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=99.82 E-value=5.4e-21 Score=217.60 Aligned_cols=136 Identities=24% Similarity=0.333 Sum_probs=114.6
Q ss_pred cccceeeeEEEEEecCCCCCceEEEEEEcCCCCCEEEEeCCccccccccCCCCEEEEE---------Eeeccceecceec
Q psy5948 371 HRLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVL---------CNLKPAKMRGIES 441 (549)
Q Consensus 371 ~~~~i~vG~I~~v~~hp~adkL~v~~vd~G~~~~~~Ivsg~~~~~~~~~l~g~~v~v~---------~nlk~~k~~G~~S 441 (549)
...+++||+|++|++||+||||++|+||+|+++++|||||++|+. +|++|+|+ +|||++||||+.|
T Consensus 41 ~~~~~~vg~v~~~~~hp~adkL~~~~vd~G~~~~~~iv~ga~n~~-----~g~~v~va~~Ga~l~~~~~ik~~k~rG~~S 115 (795)
T 3pco_B 41 SFHGVVVGEVVECAQHPNADKLRVTKVNVGGDRLLDIVCGAPNCR-----QGLRVAVATIGAVLPGDFKIKAAKLRGEPS 115 (795)
T ss_dssp CCCCEEEEEEEEEECCTTCSSCCEEEEECSSSSCEEEECCCSSCC-----TTCEEEEECTTCBCTTSCBCCCEESSSSEE
T ss_pred CCCCeEEEEEEEEEecCCCCeEEEEEEEcCCCcEEEEEeCCcccc-----CCCEEEEEecCcCcCCCceEcccccCCeec
Confidence 446799999999999999999999999999988999999999997 89999998 7999999999999
Q ss_pred ceeeecccccccCCCee-EEEeCCCCCCCCceE-EecCCCCCCCCcCCCCChhhHhhhccceeeCCCeeEEecCcee
Q psy5948 442 AGMVLCASVEEEGNKKV-EPLFVPPSSKAGDKI-VVEGYETGAPDEILNPKKKVWEKLQVDLKTSSEGIAQWQGFNI 516 (549)
Q Consensus 442 eGMllc~~~~~~~~~~~-~~l~~p~~~~~G~~i-~~~~~~~~~~~~~l~~kk~~~~~~~~~l~~~~~~~~~~~~~~~ 516 (549)
+||| ||..|+|+.+.. +|+++|+++++|+++ .+.|+++...+-.++|+|.. +++.+.+. +.++.+-+.++
T Consensus 116 ~GMl-cs~~elgl~~~~~gi~~l~~~~~~G~~~~~~l~l~D~viei~iTpNR~D---~lS~~GiA-RElaa~~~~~~ 187 (795)
T 3pco_B 116 EGML-CSFSELGISDDHSGIIELPADAPIGTDIREYLKLDDNTIEISVTPNRAD---CLGIIGVA-RDVAVLNQLPL 187 (795)
T ss_dssp SSEE-CCSGGGTSCCCCSSCCEECSSCCTTSBHHHHTCCCCEEEEEECCTTCCS---CSSHHHHH-HHHHHHHTCCC
T ss_pred CcEe-cchhhcCCCCCCCeEEECCccccCCCCHHHHhCCCceeEEeecCCCcHH---HhHHHHHH-HHHHHHhCCCC
Confidence 9998 999999886544 589999999999999 67888876677788998864 44445553 44555555544
No 52
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=99.81 E-value=1.8e-21 Score=220.71 Aligned_cols=102 Identities=47% Similarity=0.752 Sum_probs=0.0
Q ss_pred CCCccccceeeeEEEEEecCCCCCceEEEEEEcCCCCCEEEEeCCccccccccCCCCEEEEEEeeccceecceecceeee
Q psy5948 367 IIAPHRLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVLCNLKPAKMRGIESAGMVL 446 (549)
Q Consensus 367 ~~~~~~~~i~vG~I~~v~~hp~adkL~v~~vd~G~~~~~~Ivsg~~~~~~~~~l~g~~v~v~~nlk~~k~~G~~SeGMll 446 (549)
-.+|.+++||||+|++|++||+||||++|+||+|+ ++||||||++|++.+++|+|++|++++||+|+||||+.|+||||
T Consensus 620 ~~~f~k~~~~vg~i~~~~~~p~adkl~~~~vd~G~-~~~~iv~g~~~~~~~~~l~G~~v~~~~nl~~~k~~g~~S~gM~~ 698 (722)
T 1rqg_A 620 FDDFAKLDLRVGKIIEVKDHPNADKLYVVKVDLGD-EVRTLVAGLKKYYKPEELLNRYVVVVANLEPKKLRGIGSQGMLL 698 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhHhhhcceEEEEEEEEEeCCCCCcceEEEEEcCC-ceEEEEECCcccCCHHHcCCCEEeCeeEEcceeeCCcccCeEEE
Confidence 35789999999999999999999999999999998 58999999999999999999999999999999999999999996
Q ss_pred cccccccCCCeeEEEeCCCCCCCCceE
Q psy5948 447 CASVEEEGNKKVEPLFVPPSSKAGDKI 473 (549)
Q Consensus 447 c~~~~~~~~~~~~~l~~p~~~~~G~~i 473 (549)
|+..+ +.+.++.||.++++|++|
T Consensus 699 ~~~~~----~~i~~l~~~~~~~~G~~~ 721 (722)
T 1rqg_A 699 AADDG----ERVALLMPDKEVKLGAKV 721 (722)
T ss_dssp ---------------------------
T ss_pred EeeCC----CcEEEeCCCCCCCCCCCC
Confidence 66332 357778888899999987
No 53
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=99.76 E-value=2.8e-20 Score=211.53 Aligned_cols=137 Identities=16% Similarity=0.124 Sum_probs=112.0
Q ss_pred cccceeeeEEEEEecCCCCCceEEEEEEcCCCCCEEEEeCCcccc----ccccCCCCEEEE-EEeeccceecceecceee
Q psy5948 371 HRLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYV----KEGDMANRLVVV-LCNLKPAKMRGIESAGMV 445 (549)
Q Consensus 371 ~~~~i~vG~I~~v~~hp~adkL~v~~vd~G~~~~~~Ivsg~~~~~----~~~~l~g~~v~v-~~nlk~~k~~G~~SeGMl 445 (549)
...+++||+|++|++||+| ||++|+||+| +++|||||++|++ .+..+.|.+++. .+||||+||||+.|+||+
T Consensus 41 ~~~~~~vg~V~~~~~hp~a-kL~v~~Vd~G--~~~qIv~Ga~n~~~g~~v~~a~~G~~l~~~~~~ik~~klrGv~S~GMl 117 (785)
T 1b7y_B 41 IPRGVVFARVLEAHPIPGT-RLKRLVLDAG--RTVEVVSGAENARKGIGVALALPGTELPGLGQKVGERVIQGVRSFGMA 117 (785)
T ss_dssp CCTTEEEEEEEEEEECTTS-SCEEEEEESS--SEEEEEECCTTCCTTCEEEEECTTCCCSSCSSCCCCEECSSSEECSEE
T ss_pred CCCCeEEEEEEEEEECCCC-eEEEEEEecC--CEEEEEeCCCccCCCCEeEEEcCCCEeecCceEEeeeEecccccccee
Confidence 4458999999999999999 9999999999 6899999999995 455556665554 579999999999999999
Q ss_pred ecccccccCCCe-eEEEeCCCCC-CCCceE-EecCCCCCCCCcCCCCChhhHhhhccceeeCCCeeEEecCceeE
Q psy5948 446 LCASVEEEGNKK-VEPLFVPPSS-KAGDKI-VVEGYETGAPDEILNPKKKVWEKLQVDLKTSSEGIAQWQGFNIY 517 (549)
Q Consensus 446 lc~~~~~~~~~~-~~~l~~p~~~-~~G~~i-~~~~~~~~~~~~~l~~kk~~~~~~~~~l~~~~~~~~~~~~~~~~ 517 (549)
||..|+|+.+. .+|+++|+++ ++|+++ .+.| ++...+-.++|++.. |++.+.+. +.+|.+ |.++.
T Consensus 118 -cs~~eLgl~~~~~gi~~l~~~~~~~G~~~~~~l~-~D~viei~iTpNR~D---~ls~~GiA-RE~aa~-~~~~~ 185 (785)
T 1b7y_B 118 -LSPRELGVGEYGGGLLEFPEDALPPGTPLSEAWP-EEVVLDLEVTPNRPD---ALGLLGLA-RDLHAL-GYALV 185 (785)
T ss_dssp -CCHHHHTSCSCCSSCCCBCTTSSCTTCBGGGTSC-CCEEEECCCCTTCGG---GGSHHHHH-HHHHHT-TCCCC
T ss_pred -eeHHHhCCCCCCCceEECccccccCCCcHHHccC-CceEEEecCCCChHH---HhHHHHHH-HHHHhc-CCCCC
Confidence 99998887543 4699999999 999999 4566 666678889999876 55666664 566777 76663
No 54
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=99.73 E-value=1.6e-18 Score=197.92 Aligned_cols=132 Identities=23% Similarity=0.281 Sum_probs=111.1
Q ss_pred cccceeeeEEEEEecCCCCCceEEEEEEcCCCCCEEEEeCCccccccccCCCCEEEEE---------Eeeccceecceec
Q psy5948 371 HRLDIRVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSGLVNYVKEGDMANRLVVVL---------CNLKPAKMRGIES 441 (549)
Q Consensus 371 ~~~~i~vG~I~~v~~hp~adkL~v~~vd~G~~~~~~Ivsg~~~~~~~~~l~g~~v~v~---------~nlk~~k~~G~~S 441 (549)
...+++||+|++|++| ||++|+||+|+++++|||||++|+. +|++|+|+ +|||++||||+.|
T Consensus 41 ~~~~~vvg~v~~~~~h----kL~~~~vd~g~~~~~~Iv~ga~n~~-----~g~~v~va~~Ga~lpg~~~ik~~klrG~~S 111 (795)
T 2rhq_B 41 DIKNLVVGYIQSKEKG----SGNICQVDIGEEEPVQIVCGAPNVD-----AGQHVIVAKVGGRLPGGIKIKRAKLRGERS 111 (795)
T ss_dssp TCEEEEEEEEEEEECS----SSCEEEEECSSSSCEEEECCCTTCC-----TTCEEEEEEEEEEETTTEECCCEEETTEEE
T ss_pred CCCCeEEEEEEEEEEE----eEEEEEEEcCCCeEEEEEeCCchhh-----CCCEEEEEecCcCcCCCceEcceeecCccc
Confidence 3458999999999999 9999999999877899999999997 89999999 8999999999999
Q ss_pred ceeeecccccccCCCe-------eEEEeCCCCCCCCceE-EecCCCCCCCCcCCCCChhhHhhhccceeeCCCeeEEecC
Q psy5948 442 AGMVLCASVEEEGNKK-------VEPLFVPPSSKAGDKI-VVEGYETGAPDEILNPKKKVWEKLQVDLKTSSEGIAQWQG 513 (549)
Q Consensus 442 eGMllc~~~~~~~~~~-------~~~l~~p~~~~~G~~i-~~~~~~~~~~~~~l~~kk~~~~~~~~~l~~~~~~~~~~~~ 513 (549)
+||| ||..|+|+.+. .+|+.+|+++++|+++ .+.|+++...+-.++|+|.. +++.+.+. +.++.+.|
T Consensus 112 ~GMl-cs~~elGl~~~~~~~~~~~gi~~l~~~~~~G~~~~~~l~l~D~viei~iTpNR~D---~lS~~GiA-Relaa~~~ 186 (795)
T 2rhq_B 112 EGMI-CSLQEIGISSNVVPKAYENGIFVFPTEVEPGTDALTALYLNDQVMEFDLTPNRAD---ALSMVGTA-YEVAALYQ 186 (795)
T ss_dssp CSEE-CCSGGGTCCGGGSCHHHHTSCCBCSSCCCTTSBHHHHTTCSCEEEEEECCGGGGG---GSSHHHHH-HHHHHHHT
T ss_pred ccee-eeHHHcCCCcccccccCCCeEEECCCCCcCCCchhhccCCCceEEEEeCCCChHH---HhHHHHHH-HHHHHHhC
Confidence 9999 99999988655 4689999999999999 56778776677788998865 44555553 55555555
Q ss_pred cee
Q psy5948 514 FNI 516 (549)
Q Consensus 514 ~~~ 516 (549)
.++
T Consensus 187 ~~~ 189 (795)
T 2rhq_B 187 TEM 189 (795)
T ss_dssp CCB
T ss_pred CCC
Confidence 554
No 55
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=99.12 E-value=1e-10 Score=119.03 Aligned_cols=184 Identities=13% Similarity=0.055 Sum_probs=101.5
Q ss_pred EeecCCCccchhhhHHHHHHHHH--HHcCCcEEEEEeCceeeecCCCChhHHHHHHHHHHHHHHHHHHHccCCCCCeeEE
Q psy5948 52 WGTATTGRPHIAYFVPMSKIADF--LRAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKF 129 (549)
Q Consensus 52 ~Gi~PTG~lHIGn~~~~~~l~~l--~~~G~~v~ilIaD~~a~~~~~~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~k~~i 129 (549)
.--.|||.+||||+++.+ .+++ +..|.++++.|.|. | +. +....+.+. +...|.++|++++.. +
T Consensus 10 FAPsPtG~LHiG~~rtal-~n~l~Ar~~~g~~ilRieDt-----D---~~---R~~~~~~~~-I~~dL~~LGl~~D~~-~ 75 (298)
T 1nzj_A 10 FAPSPSGELHFGSLIAAL-GSYLQARARQGRWLVRIEDI-----D---PP---REVPGAAET-ILRQLEHYGLHWDGD-V 75 (298)
T ss_dssp ECCCTTSCCCHHHHHHHH-HHHHHHHHTTCEEEEEECCS-----C---GG---GSCTTHHHH-HHHHHHHTTCCCSSC-C
T ss_pred ECcCCCCCccHHHHHHHH-HHHHHHHhcCCeEEEEEecC-----C---ch---hhHHHHHHH-HHHHHHHcCCCCCCC-C
Confidence 344788999999999864 2332 34688999999993 1 11 223344444 346889999999864 7
Q ss_pred EEcccccc-ccccHHHHHHHHc---c-cCHHHHHHhh----------------H--------------HH--------h-
Q psy5948 130 VKGTDYQL-SKEYTLDVYRLSS---V-ITEHDAKKAG----------------A--------------EV--------V- 165 (549)
Q Consensus 130 ~~qS~~~~-~~~~~~~~~~l~~---~-~t~~~~k~~~----------------~--------------~~--------~- 165 (549)
++||+... ..++...+...+. + -|..+++... . .. .
T Consensus 76 ~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~~l~~~~~~Y~g~cr~~~~~g~~~~~R~r~~~~~~~f~D~~~G~~~~~~~ 155 (298)
T 1nzj_A 76 LWQSQRHDAYREALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGIIHADEK 155 (298)
T ss_dssp EEGGGCHHHHHHHHHHHHHTTCEEEECCCHHHHHHTTSSCCCTTTTTCCCSTTCEEEECCSSCCCEEEETTTEEEECCHH
T ss_pred eeeeCCHHHHHHHHHHHHHcCCcccCcCCHHHHHHcCCCCCCccccCCcCCCCCcEEEecCCcccceehhhCcccccCcc
Confidence 89998620 1111111221111 1 1222222100 0 00 0
Q ss_pred hhccCC----CcccchhhHHhhcccccccCcEEEecccchhhHHHHHHhhhhcCCCceeEEecccccCCCCCCccCCCCC
Q psy5948 166 KQVEHP----LLSGLLYPGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGGKMSSSEED 241 (549)
Q Consensus 166 ~~~~~~----~~~~~~YP~LqAaDil~~~~d~~~gG~DQ~~~~~~~r~l~~~~~~~~~~~l~~plL~~l~G~KMSKS~~~ 241 (549)
...... +=|..+|-+--++|-...++++++.|.|+..+......+...+|..+|...+.|+|.+.+|+|||||.++
T Consensus 156 ~~~~D~VL~R~dG~PtY~la~vvdD~~~giThvIrG~D~l~~t~~q~~l~~alG~~~p~~~H~pll~~~~g~KLSKR~g~ 235 (298)
T 1nzj_A 156 LAREDFIIHRRDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFGWKVPDYIHLPLALNPQGAKLSKQNHA 235 (298)
T ss_dssp HHHSCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGHHHHHHHHHHHHHHTCCCCEEEEECBCCC------------
T ss_pred cCCCCEEEECCCCCEeeeeeeeeEHHhcCCCEEEeCccccccHHHHHHHHHHcCCCCCeEEEeeeeECCCCCcccccCCc
Confidence 000000 1123356666666777789999999999998887777777888988777789999999999999999986
Q ss_pred CeeeccCC
Q psy5948 242 SKIDLLDA 249 (549)
Q Consensus 242 s~I~L~Ds 249 (549)
..|.-.++
T Consensus 236 ~~v~~~~~ 243 (298)
T 1nzj_A 236 PALPKGDP 243 (298)
T ss_dssp -CCCSSCC
T ss_pred cChhcCCc
Confidence 44433333
No 56
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=99.06 E-value=4e-10 Score=121.91 Aligned_cols=192 Identities=15% Similarity=0.102 Sum_probs=122.2
Q ss_pred EeecCCCccchhhhHHHHHHHHH--HHcCCcEEEEEeCceeeecCCCChhHHHHHHHHHHHHHHHHHHHccCCCCCeeEE
Q psy5948 52 WGTATTGRPHIAYFVPMSKIADF--LRAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKF 129 (549)
Q Consensus 52 ~Gi~PTG~lHIGn~~~~~~l~~l--~~~G~~v~ilIaD~~a~~~~~~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~k~~i 129 (549)
..=.|||.+||||++..+. +++ ...|.++++.|.|.-. . +...++.+.+ ...|.++|++++. ..
T Consensus 6 FAPSPtG~lHiG~artal~-n~l~Ar~~~G~filRieDtD~-----~------R~~~~~~~~i-~~dL~wLGl~wde-~~ 71 (492)
T 2cfo_A 6 LAPSPTGNLHIGTARTAVF-NWLYARHRGGKFILRIEDTDR-----E------RSRPEYTENI-LEGLQWLGLTWDE-GP 71 (492)
T ss_dssp ECCCTTSCCBHHHHHHHHH-HHHHHHHTTCEEEEEECCCSS-----S------SCCHHHHHHH-HHHHHHTTCCCSE-EE
T ss_pred eCCCCCCCccHHHHHHHHH-HHHHHHhcCCeEEEEEeeCCc-----c------ccchHHHHHH-HHHHHHcCCCCCC-CC
Confidence 3457899999999998642 233 2568899999999421 1 1234454543 4678899999985 37
Q ss_pred EEccccc-cccccHHHHHHHH--------------------------------cccCHHHHHHhhHH------Hhhhcc-
Q psy5948 130 VKGTDYQ-LSKEYTLDVYRLS--------------------------------SVITEHDAKKAGAE------VVKQVE- 169 (549)
Q Consensus 130 ~~qS~~~-~~~~~~~~~~~l~--------------------------------~~~t~~~~k~~~~~------~~~~~~- 169 (549)
++||+.. ...++...+..-+ +..+..+....... +++...
T Consensus 72 ~~QS~r~~~y~~~~~~Li~~G~AY~c~ct~~el~~~r~~~~~~g~~~~y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~ 151 (492)
T 2cfo_A 72 YFQSDRLDLYRQAIQTLLDKGLAYYCYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQAAFEAAGRTPVIRFKIEDD 151 (492)
T ss_dssp EEGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHHHHHHTTCCCEEEECCCTT
T ss_pred ccccCCHHHHHHHHHHHHHCCCceEecCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHhCCCCceEEEEcCCC
Confidence 8999872 1111211111100 00111110000000 000000
Q ss_pred ----------------CCCc---------------ccchhhHHhhcccccccCcEEEecccchhhHHHHHHhhhhcCCCc
Q psy5948 170 ----------------HPLL---------------SGLLYPGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYAK 218 (549)
Q Consensus 170 ----------------~~~~---------------~~~~YP~LqAaDil~~~~d~~~gG~DQ~~~~~~~r~l~~~~~~~~ 218 (549)
...+ |..+|-+-.+.|....+++.++.|.|+..|......+.+.+|..+
T Consensus 152 ~~~~~~D~v~G~~~~~~~~~~~D~Vl~R~d~~p~~G~PtY~la~vvDD~~~gIthviRG~D~~~~t~~q~~l~~alg~~~ 231 (492)
T 2cfo_A 152 RQIEWQDLVRGRVSWQGADLGGDMVIARAAPRGEIGYPLYNLVVVVDDIAMGITDVIRGEDHIGNTPKQILLYEALGATP 231 (492)
T ss_dssp CEEEEEETTTEEEEEEGGGGCSSEEEECSCCTTSCCCBCHHHHHHHHHHHTTCSEEEEEGGGTTHHHHHHHHHHHTTCCC
T ss_pred CceEEEecceeeeeecccccCCCeEEEEecCCCCCCceeehhhhhhhhhcCCCCeEEEchhhhhCHHHHHHHHHHcCCCC
Confidence 0012 344777888888888999999999999999888888889999888
Q ss_pred eeEEecccccCCCCCCccCCCCCCeeeccC------CHHHHHHHHHh
Q psy5948 219 RIHFMNPMVPGLAGGKMSSSEEDSKIDLLD------APALVKKKLKK 259 (549)
Q Consensus 219 ~~~l~~plL~~l~G~KMSKS~~~s~I~L~D------sp~~i~kKI~~ 259 (549)
|...+.|+|.+.+|+|||||.++. .+.+ .|+.+...+..
T Consensus 232 P~~~H~plil~~~g~KLSKr~g~~--~l~~~r~~G~~peal~~~l~~ 276 (492)
T 2cfo_A 232 PNFAHTPLILNSTGQKLSKRDGVT--SISDFRAMGYLAPALANYMTL 276 (492)
T ss_dssp CEEEEECCEECSSSSBCCTTSSCC--BHHHHHHTTCCHHHHHHHHHH
T ss_pred ceEEEeeeEECCCCCEecccCCcc--cHHHHHHCCCCHHHHHHHHHH
Confidence 877899999999999999999863 3332 57777776665
No 57
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=98.98 E-value=5e-10 Score=121.11 Aligned_cols=193 Identities=15% Similarity=0.105 Sum_probs=116.9
Q ss_pred eecCCCccchhhhHHHHH-HHHHHHcCCcEEEEEeCceeeecCCCChhHHHHHHHHHHHHHHHHHHHccCCCCCee----
Q psy5948 53 GTATTGRPHIAYFVPMSK-IADFLRAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKL---- 127 (549)
Q Consensus 53 Gi~PTG~lHIGn~~~~~~-l~~l~~~G~~v~ilIaD~~a~~~~~~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~k~---- 127 (549)
-=.|||.|||||++..+. .....+.|.++++.|.|. | + .+...++.+.+ ...|.++|++++.-
T Consensus 12 APsPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRieDt-----D---~---~R~~~~~~~~I-~~~L~wlGl~wDegp~~g 79 (498)
T 2ja2_A 12 CPSPTGTPHVGLVRTALFNWAYARHTGGTFVFRIEDT-----D---A---QRDSEESYLAL-LDALRWLGLDWDEGPEVG 79 (498)
T ss_dssp CCCSSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCC-----C---T---TTCCHHHHHHH-HHHHHHHTCCCSBBTTTB
T ss_pred CcCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcC-----C---C---cccChHHHHHH-HHHHHHcCCCcCCCcCcC
Confidence 347889999999998542 222235688888889993 2 1 12334555544 36788999999863
Q ss_pred ---EEEEccccc-cccccHHHHHHHHc---cc-CHHHHH---------------------------HhhHH------Hhh
Q psy5948 128 ---KFVKGTDYQ-LSKEYTLDVYRLSS---VI-TEHDAK---------------------------KAGAE------VVK 166 (549)
Q Consensus 128 ---~i~~qS~~~-~~~~~~~~~~~l~~---~~-t~~~~k---------------------------~~~~~------~~~ 166 (549)
.+|+||+.. ...++...+...+. |+ |..++. ....+ +++
T Consensus 80 G~~~~~~QS~r~~~y~~~~~~L~~~g~aY~c~ct~eel~~~r~~~~~~~~~~Y~~~cr~l~~~e~~~~~~~g~~~~iR~k 159 (498)
T 2ja2_A 80 GPYGPYRQSQRAEIYRDVLARLLAAGEAYHAFSTPEEVEARHVAAGRNPKLGYDNFDRHLTDAQRAAYLAEGRQPVVRLR 159 (498)
T ss_dssp CTTCCCBGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHTTCCTTSCCCCGGGGCCHHHHHHHHHTTCCCEEEEC
T ss_pred CCCCCeeeecCHHHHHHHHHHHHHcCCeEEeCCCHHHHHHHHHHHhcCCCCCCCCccccCCHHHHHhhhccCCCceEEEE
Confidence 589999872 11122211111100 00 111110 00000 000
Q ss_pred hcc----------------CCCc---------ccchhhHHhhcccccccCcEEEecccchhhHHHHHHhhhhc-----CC
Q psy5948 167 QVE----------------HPLL---------SGLLYPGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQL-----GY 216 (549)
Q Consensus 167 ~~~----------------~~~~---------~~~~YP~LqAaDil~~~~d~~~gG~DQ~~~~~~~r~l~~~~-----~~ 216 (549)
..+ ...+ +..+|-+.-+.|-...+++.++.|.|+..+....+.+.+.+ |.
T Consensus 160 ~~~~~~~~~D~v~G~i~~~~~~~~D~Vi~R~Dg~ptY~lA~vVDD~~mgithviRG~D~~~~t~~q~~l~~aL~~~g~g~ 239 (498)
T 2ja2_A 160 MPDDDLAWNDLVRGPVTFAAGSVPDFALTRASGDPLYTLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQALIRIGVAE 239 (498)
T ss_dssp CCSSCEEEEETTTEEEEECTTCSCCCBSBCTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHHHTTSCC
T ss_pred CCCCceEEEecccceEeecccccCcceeEccCCCcchhhHHHHHhhhcCCCEEEEChhhhhccHHHHHHHHHHHhhcCCC
Confidence 000 0001 12345555566666689999999999999998878888888 88
Q ss_pred CceeEEecccccCCCCCCccCCCCCCeeeccC------CHHHHHHHHHh
Q psy5948 217 AKRIHFMNPMVPGLAGGKMSSSEEDSKIDLLD------APALVKKKLKK 259 (549)
Q Consensus 217 ~~~~~l~~plL~~l~G~KMSKS~~~s~I~L~D------sp~~i~kKI~~ 259 (549)
.+|...+.|++.+.+|+||||+.++. .|.+ .|+.+...+..
T Consensus 240 ~~P~~~h~plil~~~g~KLSKR~g~~--~l~~~r~~G~~peAl~~~l~~ 286 (498)
T 2ja2_A 240 RIPKFAHLPTVLGEGTKKLSKRDPQS--NLFAHRDRGFIPEGLLNYLAL 286 (498)
T ss_dssp CCCEEEEECCEECSSSSBCCTTSGGG--BHHHHHHHTCCHHHHHHHHHT
T ss_pred CCCeEEEeeeeECCCCCcccccCCcc--cHHHHHhCCCCHHHHHHHHHH
Confidence 77777799999999999999999853 3332 46666665554
No 58
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=98.98 E-value=7.9e-11 Score=127.25 Aligned_cols=199 Identities=13% Similarity=0.113 Sum_probs=125.1
Q ss_pred CceEEEeecCCCccchhhhHHHHH-HHHHHHcCCcEEEEEeCceeeecCCCChhHHHHHHHHHHHHHHHHHHHccCCCCC
Q psy5948 47 DLKIYWGTATTGRPHIAYFVPMSK-IADFLRAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPIS 125 (549)
Q Consensus 47 ~~~v~~Gi~PTG~lHIGn~~~~~~-l~~l~~~G~~v~ilIaD~~a~~~~~~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~ 125 (549)
+.+.=..=.|||.|||||++..+. .....+.|.++++.|.|. |+. +...++.+. +...|.++|++++
T Consensus 25 ~v~~RFAPsPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDt-----D~~------R~~~~~~~~-I~~dL~wlGl~wD 92 (488)
T 3afh_A 25 LVRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDT-----DTE------RSSREYEQQ-ILESLRWCGLDWD 92 (488)
T ss_dssp CCEEEECCCCSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCC-----CTT------TCCHHHHHH-HHHHHHHTTCCCS
T ss_pred CceEEECCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEEeeC-----Ccc------cccHHHHHH-HHHHHHHcCCCCC
Confidence 345556667899999999998642 222235688999999993 211 233445554 3468899999998
Q ss_pred eeE-------EEEcccccc-ccccHHHHHHHHc---cc-CHHH--------------HHHhhH---HHhhhc--------
Q psy5948 126 KLK-------FVKGTDYQL-SKEYTLDVYRLSS---VI-TEHD--------------AKKAGA---EVVKQV-------- 168 (549)
Q Consensus 126 k~~-------i~~qS~~~~-~~~~~~~~~~l~~---~~-t~~~--------------~k~~~~---~~~~~~-------- 168 (549)
..- .|+||+... ..++...+...+. |+ |..+ ...... .+++..
T Consensus 93 e~~~~gG~~gp~~QSer~~~y~~~~~~L~~~G~aY~c~ct~eel~~~~~~~Y~~~~~~~~~G~~~~iR~k~~~~~~~~~D 172 (488)
T 3afh_A 93 EGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFED 172 (488)
T ss_dssp BBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEEEEECSSSTTSEEEEESSCCHHHHHTTCCEEEEECCCSSEEEEEE
T ss_pred cCCCCCCCCCCeeeeCCHHHHHHHHHHHHHcCCeEecCCCHHHHHhhcCCCCCchhhHHhcCCCceEEEECCCCceeEEe
Confidence 542 689998721 1122222222111 10 0000 000000 000000
Q ss_pred ------------cCC-----CcccchhhHHhhcccccccCcEEEecccchhhHHHHHHhhhhcCCCceeEEecccccCCC
Q psy5948 169 ------------EHP-----LLSGLLYPGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLA 231 (549)
Q Consensus 169 ------------~~~-----~~~~~~YP~LqAaDil~~~~d~~~gG~DQ~~~~~~~r~l~~~~~~~~~~~l~~plL~~l~ 231 (549)
.+. +=+..+|-+.-+.|-...++++++.|.|+..+......+.+.+|..+|...+.|+|.+.+
T Consensus 173 ~v~G~~~~~~~~~~D~Vl~R~DG~PtY~lA~vVDD~~mgIThViRG~D~l~~tp~q~~l~~aLG~~~P~f~H~pli~~~~ 252 (488)
T 3afh_A 173 LLKGYMEFDNSTLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHIPLILGSD 252 (488)
T ss_dssp TTTEEEEEEGGGSCCEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEECCEECTT
T ss_pred ccceeEeecCCCCCCeEEEecCCCeehhhHHHHHHHhcCCCEEEEchhhhhCHHHHHHHHHHcCCCCCeEEEEeeeeCCC
Confidence 000 003346666667777778999999999999999888888999999888778999999999
Q ss_pred CCCccCCCCCCeeeccC------CHHHHHHHHHh
Q psy5948 232 GGKMSSSEEDSKIDLLD------APALVKKKLKK 259 (549)
Q Consensus 232 G~KMSKS~~~s~I~L~D------sp~~i~kKI~~ 259 (549)
|+||||+.++ +.|.+ .|+.+...+..
T Consensus 253 g~KLSKR~g~--~~l~~~r~~G~~peal~n~l~~ 284 (488)
T 3afh_A 253 RTPLSKRHGA--TSVEHFRREGILSRALMNYLAL 284 (488)
T ss_dssp SSBCCTTTSC--CBHHHHHHHTCCHHHHHHHHHH
T ss_pred CCcccCcCCc--ccHHHHHHCCCCHHHHHHHHHH
Confidence 9999999985 34443 57777777765
No 59
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=98.96 E-value=4.4e-10 Score=120.93 Aligned_cols=192 Identities=14% Similarity=0.111 Sum_probs=117.3
Q ss_pred ecCCCccchhhhHHHHH-HHHHHHcCCcEEEEEeCceeeecCCCChhHHHHHHHHHHHHHHHHHHHccCCCCCeeE----
Q psy5948 54 TATTGRPHIAYFVPMSK-IADFLRAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLK---- 128 (549)
Q Consensus 54 i~PTG~lHIGn~~~~~~-l~~l~~~G~~v~ilIaD~~a~~~~~~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~k~~---- 128 (549)
=.|||.|||||+...+. .....+.|.++++.|.|. |+. +...++.+.+ ...|.++|++++...
T Consensus 8 PsPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDt-----D~~------R~~~~~~~~I-~~dl~wlGl~wd~~~~~gG 75 (468)
T 1j09_A 8 PSPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDT-----DRA------RYVPGAEERI-LAALKWLGLSYDEGPDVGG 75 (468)
T ss_dssp CCCSSSCBHHHHHHHHHHHHHHHHTTCEEEECBCCC-----CTT------SCCTTHHHHH-HHHHHHTTCCCSBBTTTBC
T ss_pred CCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEeCcC-----CCc------ccChHHHHHH-HHHHHHcCCCCCCCCCCCC
Confidence 36899999999998642 222235688999999993 211 2233444443 367889999998542
Q ss_pred ---EEEccccc-cccccHHHHHHHHc---cc-CHHHHHHh---------------hH---HHhhhcc--------C----
Q psy5948 129 ---FVKGTDYQ-LSKEYTLDVYRLSS---VI-TEHDAKKA---------------GA---EVVKQVE--------H---- 170 (549)
Q Consensus 129 ---i~~qS~~~-~~~~~~~~~~~l~~---~~-t~~~~k~~---------------~~---~~~~~~~--------~---- 170 (549)
.|+||+.. ...++...+...+. |+ |..++... .. ..+..+. .
T Consensus 76 ~~gp~~QS~r~~~y~~~~~~L~~~G~aY~c~ct~~el~~~r~~~~~y~~~cr~l~~~e~~~~~~~g~~~~~R~k~~~~~~ 155 (468)
T 1j09_A 76 PHGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKGGYDGRARNIPPEEAEERARRGEPHVIRLKVPRPGT 155 (468)
T ss_dssp TTCCCBGGGCHHHHHHHHHHHHHHTSEEEECCCHHHHHHHHHHHSSCCCGGGGSCHHHHHHHHHTTCCCEEEECCCSSCE
T ss_pred CCCCeeccCCHHHHHHHHHHHHHcCCeEEcCCCHHHHHHHHHHcCCCCCcccCCCHHHHHHHHhcCCCceEEEecCCCCc
Confidence 48999872 11122222221111 11 11111000 00 0000000 0
Q ss_pred ---------------CCc---------ccchhhHHhhcccccccCcEEEecccchhhHHHHHHhhhhcCCCceeEEeccc
Q psy5948 171 ---------------PLL---------SGLLYPGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPM 226 (549)
Q Consensus 171 ---------------~~~---------~~~~YP~LqAaDil~~~~d~~~gG~DQ~~~~~~~r~l~~~~~~~~~~~l~~pl 226 (549)
..+ +..+|-+--+.|....++++++.|.|+..|......+.+.+|..+|...+.|+
T Consensus 156 ~~~~D~~~G~~~~~~~~~~D~Vl~R~dg~PtY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg~~~p~~~h~~l 235 (468)
T 1j09_A 156 TEVKDELRGVVVYDNQEIPDVVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRFYHMPL 235 (468)
T ss_dssp EEEEETTTEEEEEEGGGSCCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEECC
T ss_pred eEEEeccceeEeecccCCCCeEEEecCCCeeehhHHHHHHHHCCCCeEEEChhhhhhHHHHHHHHHHcCCCCCeEEEeee
Confidence 000 12245555556666678999999999999998888888999987776678999
Q ss_pred ccCCCCCCccCCCCCCeeeccC------CHHHHHHHHHh
Q psy5948 227 VPGLAGGKMSSSEEDSKIDLLD------APALVKKKLKK 259 (549)
Q Consensus 227 L~~l~G~KMSKS~~~s~I~L~D------sp~~i~kKI~~ 259 (549)
+.+.+|+||||+.++. .|.+ .|+.+...+..
T Consensus 236 i~~~~g~klSKR~g~~--~l~~~~~~G~~peal~~~l~~ 272 (468)
T 1j09_A 236 LRNPDKTKISKRKSHT--SLDWYKAEGFLPEALRNYLCL 272 (468)
T ss_dssp CBCTTSCBCCTTTSCC--BHHHHHHTTCCHHHHHHHHHH
T ss_pred eeCCCCCccccccchh--hHHHHHHCCCCHHHHHHHHHH
Confidence 9999999999999864 3332 57777766665
No 60
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=98.88 E-value=1.6e-08 Score=108.87 Aligned_cols=199 Identities=11% Similarity=0.022 Sum_probs=122.7
Q ss_pred CceEEEeecCCCccchhhhHHHHHHHHH--HHcCCcEEEEEeCceeeecCCCChhHHHHHHHHHHHHHHHHHHHccCCCC
Q psy5948 47 DLKIYWGTATTGRPHIAYFVPMSKIADF--LRAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPI 124 (549)
Q Consensus 47 ~~~v~~Gi~PTG~lHIGn~~~~~~l~~l--~~~G~~v~ilIaD~~a~~~~~~~~~~~~~~~~~~~~~~i~~~l~a~Gldp 124 (549)
+.+.=..=.|||.+||||+++.+. .++ ...|.+.++.|-|. | + .+...++.+. +...|.++|+++
T Consensus 25 ~v~~RFAPSPTG~lHiG~~rtal~-n~l~Ar~~~G~filRieDt-----D---~---~R~~~~~~~~-i~~dl~wlGl~~ 91 (490)
T 4g6z_A 25 PVRTRFAPSPTGFIHLGNIRSALY-PWAFARKMKGTFVLRIEDT-----D---V---ERSSQEAVDA-ILEGMAWLGLDY 91 (490)
T ss_dssp CCEEEECCCCCSCCBHHHHHHHHH-HHHHHHHTTCEEEEEECCC-----C---G---GGCCHHHHHH-HHHHHHHTTCCC
T ss_pred CceEEeCCCCCCCccHHHHHHHHH-HHHHHHhcCCeEEEEeCCC-----C---c---ccccHHHHHH-HHHHHHHcCCCC
Confidence 445555567889999999998642 222 24688888888872 1 1 1233455554 346889999999
Q ss_pred CeeEEEEccccc-cccccHHHHHHHHc---cc-CHHHHHH---h----------------hH--------------HHhh
Q psy5948 125 SKLKFVKGTDYQ-LSKEYTLDVYRLSS---VI-TEHDAKK---A----------------GA--------------EVVK 166 (549)
Q Consensus 125 ~k~~i~~qS~~~-~~~~~~~~~~~l~~---~~-t~~~~k~---~----------------~~--------------~~~~ 166 (549)
+. ..|+||+.- ...++...+..-+. |+ |..+... . .. .+++
T Consensus 92 d~-~~~~qS~r~~~y~~~~~~Li~~G~aY~C~ct~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~~~~~~g~~~~~R~k 170 (490)
T 4g6z_A 92 DE-GPYYQMQRMDRYREVLAQMQEKGLVYPCYMSTEELDALRERQRAAGEKPRYDGTWRPEPGKVLPEPPAGVAPVLRFR 170 (490)
T ss_dssp SE-EEEEGGGCHHHHHHHHHHHHHTTSEEEECC-------------------CCCCTTCCCTTCCCCCCCTTCCCEEEEC
T ss_pred CC-CCcccccCHHHHHHHHHHHHHCCCEEeCCCCHHHHHHHHHHHHhcCCCCCCCcccccCChhhhhhhhcCCCceEEEe
Confidence 85 368999851 11122222221110 10 1111000 0 00 0000
Q ss_pred hc-c----------------CCC---------cccchhhHHhhcccccccCcEEEecccchhhHHHHHHhhhhcCCCcee
Q psy5948 167 QV-E----------------HPL---------LSGLLYPGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYAKRI 220 (549)
Q Consensus 167 ~~-~----------------~~~---------~~~~~YP~LqAaDil~~~~d~~~gG~DQ~~~~~~~r~l~~~~~~~~~~ 220 (549)
.. + +.. -|..+|-+.-+.|-...+++.++.|.|+..+...-..+.+.+|..+|.
T Consensus 171 ~~~~~~~~~~D~i~G~~~~~~~~~~D~Vl~R~DG~ptY~lA~vVDD~~mgIThViRG~D~l~~tprq~~l~~aLG~~~P~ 250 (490)
T 4g6z_A 171 NPLTGTVAWDDAVKGRVEISNEELDDLVVARPDGTPMYNFCVVVDDLDMGITHVIRGDDHVNNTPRQINILRALGGEVPV 250 (490)
T ss_dssp CCCSSEEEEEETTTEEEEEEGGGCCCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHTTCCCCE
T ss_pred cCCCCcEEEEEeeeeeeeeccccCCCeEEEeeCCCccchhHHHHHHHhcCCCEEEeccccccChHHHHHHHHHcCCCCCe
Confidence 00 0 000 123467777777888899999999999998888778888999998888
Q ss_pred EEecccccCCCCCCccCCCCCCeee-cc---CCHHHHHHHHHh
Q psy5948 221 HFMNPMVPGLAGGKMSSSEEDSKID-LL---DAPALVKKKLKK 259 (549)
Q Consensus 221 ~l~~plL~~l~G~KMSKS~~~s~I~-L~---Dsp~~i~kKI~~ 259 (549)
..+.|+|.+.+|+||||+++..+|. +- -.|+.+...+..
T Consensus 251 f~HlpLi~~~~g~KLSKR~g~~sl~~~r~~G~~peal~n~l~~ 293 (490)
T 4g6z_A 251 YAHLPTVLNEQGEKMSKRHGAMSVMGYRDAGYLPEAVLNYLAR 293 (490)
T ss_dssp EEEECCEECTTSSBCCTTTTCCBHHHHHHTTCCHHHHHHHHHT
T ss_pred EEEecceeCCCCCcccCCCCCcCHHHHHHCCCCHHHHHHHHHH
Confidence 8899999999999999999853321 11 167888777765
No 61
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=98.83 E-value=2.6e-10 Score=125.90 Aligned_cols=198 Identities=13% Similarity=0.141 Sum_probs=121.4
Q ss_pred ceEEEeecCCCccchhhhHHHHH-HHHHHHcCCcEEEEEeCceeeecCCCChhHHHHHHHHHHHHHHHHHHHccCCCCCe
Q psy5948 48 LKIYWGTATTGRPHIAYFVPMSK-IADFLRAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISK 126 (549)
Q Consensus 48 ~~v~~Gi~PTG~lHIGn~~~~~~-l~~l~~~G~~v~ilIaD~~a~~~~~~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~k 126 (549)
.++=..=.|||.|||||+++... .......|.++++.|.|. |+. +...++.+. +...|.++|++++.
T Consensus 130 v~~RFaPsPTG~LHiG~artAl~n~l~Ar~~~G~~ilRieDt-----D~~------r~~~~~~~~-I~~dL~wlGl~~D~ 197 (592)
T 3al0_C 130 VRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDT-----DTE------RSSREYEQQ-ILESLRWCGLDWDE 197 (592)
T ss_dssp CEEEECCCSSSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCC-----CSS------SCCHHHHHH-HHHHHHHTTCCCSB
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHHHHHhcCCcEEEEecCc-----Chh------hccHHHHHH-HHHHHHHcCCCCCC
Confidence 44544578899999999998642 121224688999999882 211 123344444 34688899999985
Q ss_pred e-------EEEEccccc-cccccHHHHHHHHc---cc-C-----------HH---HHHHhh---HHHhhhcc--------
Q psy5948 127 L-------KFVKGTDYQ-LSKEYTLDVYRLSS---VI-T-----------EH---DAKKAG---AEVVKQVE-------- 169 (549)
Q Consensus 127 ~-------~i~~qS~~~-~~~~~~~~~~~l~~---~~-t-----------~~---~~k~~~---~~~~~~~~-------- 169 (549)
. -.|+||+.. ...++...+...+. |+ | +. +..... ..+++..+
T Consensus 198 ~~~~gG~~gp~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~el~~~~~~~Y~~~~~~~~~g~~~~iR~k~~~~~~~~~D~ 277 (592)
T 3al0_C 198 GPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDL 277 (592)
T ss_dssp BTTTBCTTCCCBSTTCHHHHHHHHHHHHHTTTEEEEEEETTEEEEECCCCSSCCHHHHHTTCCEEEEECCCSSCCEECCT
T ss_pred CCCcCCCCCCeeeeCCHHHHHHHHHHHHHcCCceEecCCHHHHHhhcCCCCCcHHHHhhcCCCceEEEECCCCCceeeec
Confidence 4 268899872 11112222222111 10 0 00 000000 00000000
Q ss_pred --------CCCc---------ccchhhHHhhcccccccCcEEEecccchhhHHHHHHhhhhcCCCceeEEecccccCCCC
Q psy5948 170 --------HPLL---------SGLLYPGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAG 232 (549)
Q Consensus 170 --------~~~~---------~~~~YP~LqAaDil~~~~d~~~gG~DQ~~~~~~~r~l~~~~~~~~~~~l~~plL~~l~G 232 (549)
...+ |..+|-+.-+.|....++++++.|.|+..+......+.+.+|..+|...+.|+|.+.+|
T Consensus 278 v~G~~~~~~~~~~D~Vl~R~dg~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg~~~P~~~hlpli~~~~g 357 (592)
T 3al0_C 278 LKGYMEFDNSTLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHIPLILGSDR 357 (592)
T ss_dssp TTCSEECCSSSSCCEEEECTTSCCCHHHHHHHHHHHTTCSBCCEEGGGGGGHHHHHHHHTTTTCCCCBCCEECCCBCTTS
T ss_pred ccceeeeccccCCCeEEEcCCCCeehhhHHHHHHHhcCCCeEEEchhhHhCHHHHHHHHHHhCCCCCeEEEeeeeeCCCC
Confidence 0000 12356556666777789999999999999999888899999988776678999999999
Q ss_pred CCccCCCCCCeeeccC------CHHHHHHHHHh
Q psy5948 233 GKMSSSEEDSKIDLLD------APALVKKKLKK 259 (549)
Q Consensus 233 ~KMSKS~~~s~I~L~D------sp~~i~kKI~~ 259 (549)
+||||+.++ +.|.+ .|+.+...+..
T Consensus 358 ~KLSKR~g~--~~l~~~~~~G~~peal~~~l~~ 388 (592)
T 3al0_C 358 TPLSKRHGA--TSVEHFRREGILSRALMNYLAL 388 (592)
T ss_dssp SBCCTTTCS--SBHHHHHHTTCCHHHHHHHHTT
T ss_pred CcccccCCc--ccHHHHHHCCCCHHHHHHHHHH
Confidence 999999985 33433 57777766655
No 62
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=98.82 E-value=2.4e-08 Score=108.89 Aligned_cols=66 Identities=18% Similarity=0.158 Sum_probs=59.1
Q ss_pred chhhHHhhcccccccCcEEEecccchhhHHHHHHhhhhcCCCceeEEecccccCCCCCCccCCCCC
Q psy5948 176 LLYPGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGGKMSSSEED 241 (549)
Q Consensus 176 ~~YP~LqAaDil~~~~d~~~gG~DQ~~~~~~~r~l~~~~~~~~~~~l~~plL~~l~G~KMSKS~~~ 241 (549)
.+|-+.-+.|....+++.++.|.|...+......+.+.+|..+|...|.|+|.+.+|+|+||+++.
T Consensus 215 PtY~fA~vVDD~~mgITHViRG~D~l~sTp~q~~l~~alg~~~P~y~H~pli~~~~g~kLSKR~~~ 280 (512)
T 4gri_A 215 PTYHLANVVDDYLMKITHVLRAQEWVSSGPLHVLLYKAFKWKPPIYCHLPMVMGNDGQKLSKRHGS 280 (512)
T ss_dssp BCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEECCCBCTTSSBCCTTTSC
T ss_pred ccccccceecccccCCceeccccccccccHHHHHHHHHcCCCCCeEEecchhccccccccCccccc
Confidence 367777777877899999999999999998888899999999998899999999999999999874
No 63
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=98.68 E-value=1.9e-08 Score=108.63 Aligned_cols=82 Identities=13% Similarity=0.093 Sum_probs=65.0
Q ss_pred chhhHHhhcccccccCcEEEecccchhhHHHHHHhhhhcCCCceeEEecccccCCCCCCccCCCCCCeeeccC------C
Q psy5948 176 LLYPGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGGKMSSSEEDSKIDLLD------A 249 (549)
Q Consensus 176 ~~YP~LqAaDil~~~~d~~~gG~DQ~~~~~~~r~l~~~~~~~~~~~l~~plL~~l~G~KMSKS~~~s~I~L~D------s 249 (549)
.+|-+--+.|....+++.++.|.||..|...-..+.+.+|..+|...+.|++.+.+|+||||+.++. .|.+ .
T Consensus 204 ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~aLG~~~p~~~H~plil~~~G~KLSKR~g~~--~l~~~~~~G~~ 281 (481)
T 2o5r_A 204 PTYNFACVVDDMLMEITHVIRGDDHLSNTLRQLALYEAFEKAPPVFAHVSTILGPDGKKLSKRHGAT--SVEAFRDMGYL 281 (481)
T ss_dssp BCHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHHHHTTCCCCEEEEECCEECTTSSBCCGGGSCC--BHHHHHHHTCC
T ss_pred cchhhHHHHHHHhCCCCeEEEChhHHHhHHHHHHHHHHcCCCCCeEEEEeeEECCCCCcccCcCCcc--cHHHHHHCCCC
Confidence 3666666667777899999999999999988888889999887777789999999999999999863 3432 4
Q ss_pred HHHHHHHHHh
Q psy5948 250 PALVKKKLKK 259 (549)
Q Consensus 250 p~~i~kKI~~ 259 (549)
|+.+...+..
T Consensus 282 peal~~~l~~ 291 (481)
T 2o5r_A 282 PEALVNYLAL 291 (481)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 6666665554
No 64
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=98.61 E-value=1.3e-07 Score=102.81 Aligned_cols=210 Identities=17% Similarity=0.132 Sum_probs=96.8
Q ss_pred CCCCHHHHHHHHHcccccccCHHHH-HHHH-h----cCCceEEEeecCCCccchhhhHHHHHHHHHH--HcCCcEEEEEe
Q psy5948 15 PSLSFDEKKQLITRNLQEFLGEDRL-NVIL-K----ERDLKIYWGTATTGRPHIAYFVPMSKIADFL--RAGCEVTILFA 86 (549)
Q Consensus 15 ~~~~~~~~~~li~R~~~ei~~~~~L-~~~l-~----~~~~~v~~Gi~PTG~lHIGn~~~~~~l~~l~--~~G~~v~ilIa 86 (549)
+.|+.+++.+.|....-|.+.++.- +..+ . +.+.+.=..=.|||.+||||+.+++. +++. ..|.++++-|-
T Consensus 58 n~~~~e~~~~~l~~~~pe~~~~~~~~~~~~~~L~~~~g~v~tRFaPsPtG~LHIGhaRtal~-n~l~Ar~~~G~~iLRie 136 (553)
T 3aii_A 58 NSLSPEEQQQEMERLGLEITERKQKKRKGLRELAGVKGEVVLRFAPNPSGPLHIGHARAAIL-NHEYARKYDGRLILRIE 136 (553)
T ss_dssp -----------------------------CCCCSSCCSCCEEEECCCSSSSCBHHHHHHHHH-HHHHHHHTTCEEEEEEC
T ss_pred HcCCHHHHHHHHHHhChhhhhhhhhhcccCCCCCCCCCceEEEeCCCCCCCccHHHHHHHHH-HHHHHHHcCCEEEEEEC
Confidence 4566677776666543333322210 0111 0 12233344446679999999998642 3333 45788898888
Q ss_pred CceeeecCCCChhHHHHHHHHHHHHHHHHHHHccCCCCCeeEEEEccccc-cccccHHHHHHHH----------------
Q psy5948 87 DLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPISKLKFVKGTDYQ-LSKEYTLDVYRLS---------------- 149 (549)
Q Consensus 87 D~~a~~~~~~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS~~~-~~~~~~~~~~~l~---------------- 149 (549)
|. ++. +...++.+. +...+.++|++++ ..++||+.- ...++...+..-+
T Consensus 137 Dt--------D~~---R~~~e~~~~-I~edL~wLGl~wd--~~~~qSdr~~~y~~~~~~Li~~G~AY~c~cs~eei~~~r 202 (553)
T 3aii_A 137 DT--------DPR---RVDPEAYDM-IPADLEWLGVEWD--ETVIQSDRMETYYEYTEKLIERGGAYVCTCRPEEFRELK 202 (553)
T ss_dssp CC--------CGG---GCCTTHHHH-HHHHHHHHTCCCS--EEEEGGGGHHHHHHHHHHHHHTTSEEEECSCHHHHHHHH
T ss_pred cC--------Ccc---cccHHHHHH-HHHHHHHcCCCCC--CCcccccCHHHHHHHHHHHHHcCCceeCCCCHHHHHHHh
Confidence 83 221 223455554 3468889999997 689999871 1111111111100
Q ss_pred --------cccCHHHHHHhhHHHhhhcc---------------CCC----------------cc-----cchhhHHhhcc
Q psy5948 150 --------SVITEHDAKKAGAEVVKQVE---------------HPL----------------LS-----GLLYPGLQALD 185 (549)
Q Consensus 150 --------~~~t~~~~k~~~~~~~~~~~---------------~~~----------------~~-----~~~YP~LqAaD 185 (549)
+..+..+... .++.+..+. +.. .| --+|-+-.+.|
T Consensus 203 ~~g~~~~cR~~s~ee~l~-~f~~m~~G~~g~~~lR~k~d~~~~n~~~~Dfvl~R~~~~~hp~~Gd~~~g~PtYhfa~~vD 281 (553)
T 3aii_A 203 NRGEACHCRSLGFRENLQ-RWREMFEMKEGSAVVRVKTDLNHPNPAIRDWVSMRIVEAEHPRTGTRYRVYPMMNFSVAVD 281 (553)
T ss_dssp HTTCCCGGGGCCHHHHHH-HHHHGGGSCTTSCEEEECCCTTCSSGGGTTCEEEEECCSCBTTTBTSCCEEECHHHHHHHH
T ss_pred hcCCCCccccCCHHHHHH-HHHHHhcCCcCceEEEEEcccccCCCCCCCcEEEEecCCCCCccCCCceeeeeeeeeeeee
Confidence 0111111000 000011110 000 11 12566777788
Q ss_pred cccccCcEEEecccchhhHHHHHHhhhhcCCCceeEEecccccCCCCCCccCCCCC
Q psy5948 186 EEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGGKMSSSEED 241 (549)
Q Consensus 186 il~~~~d~~~gG~DQ~~~~~~~r~l~~~~~~~~~~~l~~plL~~l~G~KMSKS~~~ 241 (549)
....++++++.|.|+..|......+...+|...|...+.|+| ..+|+|||||.++
T Consensus 282 D~~~GIThviRG~D~~~nt~~Q~~l~~alG~~~P~y~H~~~L-~~~g~KLSKR~~~ 336 (553)
T 3aii_A 282 DHLLGVTHVLRGKDHLANREKQEYLYRHLGWEPPEFIHYGRL-KMDDVALSTSGAR 336 (553)
T ss_dssp HHHTTCCEEEC-----CHHHHHHHHHHHHTCCCCEEECCCCB-C-------CHHHH
T ss_pred eccCCCceEeccHhhhhCHHHHHHHHHHcCCCCCeEEEeeEE-ecCCceechhhhh
Confidence 888999999999999888777666778888776766799988 5689999999763
No 65
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=98.44 E-value=4.2e-07 Score=99.45 Aligned_cols=69 Identities=26% Similarity=0.299 Sum_probs=36.4
Q ss_pred ccCcEEEecccchh---hHHHHHHhh-hhcCCCceeEEecccccCC-CCCCccCCCCCCeeeccC-----CHHHHHHHHH
Q psy5948 189 LKVDAQFGGVDQRK---IFTLAEKYL-PQLGYAKRIHFMNPMVPGL-AGGKMSSSEEDSKIDLLD-----APALVKKKLK 258 (549)
Q Consensus 189 ~~~d~~~gG~DQ~~---~~~~~r~l~-~~~~~~~~~~l~~plL~~l-~G~KMSKS~~~s~I~L~D-----sp~~i~kKI~ 258 (549)
+++++.++|.||.. +......++ ..+|..+|..+++++|..- +|+|||||.++ .|.+.| .|+.++-.+.
T Consensus 229 l~~~vd~~G~Dh~~~h~s~~~~~~i~~~alG~~~p~~~h~~~i~~~g~g~KmSKs~Gn-~i~~~~~~~~~~pdalR~~l~ 307 (523)
T 1irx_A 229 FGVDFEPAGKDHLVAGSSYDTGKEIIKEVYGKEAPLSLMYEFVGIKGQKGKMSGSKGN-VILLSDLYEVLEPGLVRFIYA 307 (523)
T ss_dssp SCCCBCCEEHHHHSTTSHHHHHHHHHHHHHCCCCCBCCEECCEEESCC---------C-CCCHHHHHTTSCHHHHHHHHH
T ss_pred cCCCCcCCCcCccCCCcchhhHHHHHHHHhCCCCCeEEEEEEEEeCCCCCCCCCcCCC-CCCHHHHHHHcCHHHHHHHHH
Confidence 45556688999866 222334444 5668767777788998887 68999999996 554432 4444444443
No 66
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=98.13 E-value=1.4e-05 Score=86.85 Aligned_cols=179 Identities=12% Similarity=0.090 Sum_probs=104.8
Q ss_pred CceEEEeecCCCccchhhhHHHHHHHHHH--HcCCcEEEEEeCceeeecCCCChhHHHHHHHHHHHHHHHHHHHccCCCC
Q psy5948 47 DLKIYWGTATTGRPHIAYFVPMSKIADFL--RAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPI 124 (549)
Q Consensus 47 ~~~v~~Gi~PTG~lHIGn~~~~~~l~~l~--~~G~~v~ilIaD~~a~~~~~~~~~~~~~~~~~~~~~~i~~~l~a~Gldp 124 (549)
+.+.=.+=.|||.+||||..+++. +++. ..|.++++-|-|. ++ .+...++.+.+ ...+.++|+++
T Consensus 26 ~v~tRFaPSPtG~LHIGhaRtal~-n~l~Ar~~gG~fiLRieDT--------D~---~R~~~e~~~~I-~edL~wLGl~w 92 (553)
T 1qtq_A 26 TVHTRFPPEPNGYLHIGHAKSICL-NFGIAQDYKGQCNLRFDDT--------NP---VKEDIEYVESI-KNDVEWLGFHW 92 (553)
T ss_dssp SCEEEECCCTTSCCBHHHHHHHHH-HHHHHHHTTCEEEEEECCC--------CG---GGCCHHHHHHH-HHHHHHTTCCC
T ss_pred ceEEEeCCCCCCCccHHHHHHHHH-HHHHHHHcCCEEEEEECCC--------Cc---hhcCHHHHHHH-HHHHHHcCCCC
Confidence 445556777889999999998642 3333 4688999999883 22 12344555553 46889999998
Q ss_pred CeeEEEEccccc-cccccHHHHHH-------------H--Hc-------------ccCHHHHHHhhHHHhhhcc------
Q psy5948 125 SKLKFVKGTDYQ-LSKEYTLDVYR-------------L--SS-------------VITEHDAKKAGAEVVKQVE------ 169 (549)
Q Consensus 125 ~k~~i~~qS~~~-~~~~~~~~~~~-------------l--~~-------------~~t~~~~k~~~~~~~~~~~------ 169 (549)
+. ..++||+.- ..-++...+.. + .+ ..+..+... .++.++.+.
T Consensus 93 de-~~~~qSer~~~~~~~a~~Li~~G~AY~c~ct~eel~~~r~~~~~~g~~~~~R~~s~ee~~~-~fe~m~~G~~~~g~~ 170 (553)
T 1qtq_A 93 SG-NVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLA-LFEKMRAGGFEEGKA 170 (553)
T ss_dssp SS-SCEEGGGGHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHCCSSSCCCCCTTTTCCHHHHHH-HHHHHHTTCSCTTSC
T ss_pred CC-CCeehcccHHHHHHHHHHHHHCCCceecCCCHHHHHHHhcccccCCCCCccccCchhhhHh-HHHHHhCCCccCCce
Confidence 43 468999872 11122211111 0 00 001110000 001111100
Q ss_pred -----------CCC----------------cc-----cchhhHHhhcccccccCcEEEecccchhhHHHHHHhhhhcCCC
Q psy5948 170 -----------HPL----------------LS-----GLLYPGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYA 217 (549)
Q Consensus 170 -----------~~~----------------~~-----~~~YP~LqAaDil~~~~d~~~gG~DQ~~~~~~~r~l~~~~~~~ 217 (549)
... .+ --+|-+--+.|....++++++.|.|+..|......+.+.++..
T Consensus 171 ~lR~kid~~~~~~~~~D~Vl~R~~~~~h~~~~d~w~g~PtY~la~vvDDh~~GITHviRg~e~~~n~~~q~~l~~alg~~ 250 (553)
T 1qtq_A 171 CLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNITIP 250 (553)
T ss_dssp EEEECSCTTCSSGGGSSCEEEEECCCCBTTTBTSCSEEECHHHHHHHHHHHTTCSEEEEEGGGTTTHHHHHHHHHTSCCS
T ss_pred EEEEecccccCCCCCCCcEEEEecCCCCCccCCCCccccccccccEEEeccCCcceEeeccchhhhHHHHHHHHHHcCCC
Confidence 000 01 1256677777888899999999999988887766677788875
Q ss_pred -ceeEEecccccCCCCCCccCCCCC
Q psy5948 218 -KRIHFMNPMVPGLAGGKMSSSEED 241 (549)
Q Consensus 218 -~~~~l~~plL~~l~G~KMSKS~~~ 241 (549)
.|...+...| +++|+|||||.++
T Consensus 251 ~~P~~~~f~hL-n~~g~KLSKR~~~ 274 (553)
T 1qtq_A 251 VHPRQYEFSRL-NLEYTVMSKRKLN 274 (553)
T ss_dssp CCCEEEEECCC-CBTTSCCCHHHHH
T ss_pred CCCCeEEEEee-cCCCccccccccc
Confidence 3533333333 7789999999863
No 67
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=97.98 E-value=3e-05 Score=88.06 Aligned_cols=177 Identities=14% Similarity=0.089 Sum_probs=102.9
Q ss_pred ceEEEeecCCCccchhhhHHHHHHHHHH--HcCCcEEEEEeCceeeecCCCChhHHHHHHHHHHHHHHHHHHHccCCCCC
Q psy5948 48 LKIYWGTATTGRPHIAYFVPMSKIADFL--RAGCEVTILFADLHAYLDNMKAPWELLALRTKYYEESIKAMLESIDVPIS 125 (549)
Q Consensus 48 ~~v~~Gi~PTG~lHIGn~~~~~~l~~l~--~~G~~v~ilIaD~~a~~~~~~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~ 125 (549)
.+.=.+=.|||.+||||...++. +++. ..|.++++.|-|. |+. +...+|.+.+ ...+.++|++++
T Consensus 67 v~tRFaPSPtG~LHIGhARtAL~-n~l~Ar~~gG~fiLRIEDT-----D~~------R~~~e~~~~I-ledL~wLGl~wd 133 (851)
T 2hz7_A 67 VVTRFPPDPSGYAHLGHVFASLL-DFNTARQYGGQFNLRMDDT-----NPE------LARQEYVDSI-ADDLKWLGLDWG 133 (851)
T ss_dssp CEEEECCCSSSCCBHHHHHHHHH-HHHHHHHTTCEEEEEECCC-----CTT------TCCHHHHHHH-HHHHHHHTCCCT
T ss_pred eEEEeCCCCCCCccHHHHHHHHH-HHHHHHHcCCEEEEEECcC-----Ccc------cccHHHHHHH-HHHHHHcCCCCC
Confidence 34444778889999999998642 3333 4688999999883 212 2344555553 468889999984
Q ss_pred eeEEEEccccc-cccccHHHHHH----------------HH------------cccCHHHHHHhhHHHhhhcc-------
Q psy5948 126 KLKFVKGTDYQ-LSKEYTLDVYR----------------LS------------SVITEHDAKKAGAEVVKQVE------- 169 (549)
Q Consensus 126 k~~i~~qS~~~-~~~~~~~~~~~----------------l~------------~~~t~~~~k~~~~~~~~~~~------- 169 (549)
. ..++||+.- ...++...+.. .- +..+..+.. ..++.++.+.
T Consensus 134 e-~~~~qSer~d~y~e~a~~LI~~G~AY~c~ct~eel~~~r~~~~~~G~~s~~R~ls~ee~l-~~fe~m~~G~~~~g~~v 211 (851)
T 2hz7_A 134 E-HFYYASDYFDRYYAYAEQLIRQGDAYVESVSPEELSRLRGNATTPGTPSPYRDRSVEENL-DLLRRMKAGEFADGEHV 211 (851)
T ss_dssp T-CEEEGGGGHHHHHHHHHHHHHTTSEEEECSCHHHHHHHHCBTTBCCCCCTTTTCCHHHHH-HHHHHHHTTCSCTTSCE
T ss_pred C-CcccHhhhHHHHHHHHHHHHHCCCcEeecCCHHHHHHHhcchhccCCCcccccCCHHHHh-hHHHHHhcCCcccCCee
Confidence 3 478999871 11122111111 10 000111000 0001111110
Q ss_pred ----------CCCc---------------------ccchhhHHhhcccccccCcEEEecccchhhHHHHHHhhhhcCCCc
Q psy5948 170 ----------HPLL---------------------SGLLYPGLQALDEEYLKVDAQFGGVDQRKIFTLAEKYLPQLGYAK 218 (549)
Q Consensus 170 ----------~~~~---------------------~~~~YP~LqAaDil~~~~d~~~gG~DQ~~~~~~~r~l~~~~~~~~ 218 (549)
...+ +--+|-+-.+.|....++++++.|.|+..|.....-+...+|...
T Consensus 212 lR~Kid~~~~~~~~~DfVl~R~~~~~h~~~gd~w~g~PtYhfA~vVDD~~~GITHViRG~D~~~n~~~q~~l~~alG~~~ 291 (851)
T 2hz7_A 212 LRAKIDLTAPNMKLRDPVLYRIVNKPHFRTSDEWHIYPAYDFEHPLQDAIEGVTHSMCSLEFVDNRAIYDWLMEKLNFDP 291 (851)
T ss_dssp EEECCCTTCSSGGGSSCEEEEECCCCBTTTBTSCSEEECHHHHHHHHHHHHTCSEEEEEGGGTTTHHHHHHHHHHTTCSS
T ss_pred EEEeccccccCCCCCCcEEEEecCCCCCccCCCCccccccceeeEeeeccCCcceeecchhhhhChHHHHHHHHHcCCCC
Confidence 0000 111566777888888999999999999888777666677788753
Q ss_pred -eeEEecccccCCCCCCccCCCC
Q psy5948 219 -RIHFMNPMVPGLAGGKMSSSEE 240 (549)
Q Consensus 219 -~~~l~~plL~~l~G~KMSKS~~ 240 (549)
|...+...| .++|.|||||.+
T Consensus 292 ~P~~~~fahL-n~~g~KLSKR~g 313 (851)
T 2hz7_A 292 RPHQYEFGRR-GLEYTITSKRKL 313 (851)
T ss_dssp CCEEEEECCE-EETTCCCCHHHH
T ss_pred CCCceEEEEe-cCCCcccccccc
Confidence 433333333 468999999975
No 68
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=97.83 E-value=0.00012 Score=79.29 Aligned_cols=69 Identities=22% Similarity=0.200 Sum_probs=43.2
Q ss_pred ccCcEEEecccchh-hHHHHHHhhhhcCCCcee-EEecccccCCCCCCccCCCCCCeeeccC-----CHHHHHHHHHh
Q psy5948 189 LKVDAQFGGVDQRK-IFTLAEKYLPQLGYAKRI-HFMNPMVPGLAGGKMSSSEEDSKIDLLD-----APALVKKKLKK 259 (549)
Q Consensus 189 ~~~d~~~gG~DQ~~-~~~~~r~l~~~~~~~~~~-~l~~plL~~l~G~KMSKS~~~s~I~L~D-----sp~~i~kKI~~ 259 (549)
+.+|+.++|.||.. |..+-......+|..++- .+++.++.. +|+|||||.|| .|.+.| .++.++=-+..
T Consensus 249 ~p~di~~~G~D~~~~H~~~~~a~l~~~g~~~~~~~~~~G~v~~-~G~KMSKS~GN-~i~~~dli~~~g~DalR~~ll~ 324 (497)
T 2csx_A 249 WPADLHLVGKDILRFHTVYWPAFLMSLGYELPKKVFAHGWWTV-EGKKMSKTLGN-VVDPYEVVQEYGLDEVRYFLLR 324 (497)
T ss_dssp CSCSCEEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEECCEES-SSSBCCTTTTC-CCCHHHHHHHHCHHHHHHHHHH
T ss_pred CCceEEEeecchhHhHHHHHHHHHHHcCCCCCcEEEECcEEEe-CCceeCCcCCC-CCCHHHHHHHCCcHHHHHHHHh
Confidence 36789999999976 332211122234544332 456677665 99999999996 777655 45555555554
No 69
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=97.81 E-value=9.8e-05 Score=80.02 Aligned_cols=70 Identities=17% Similarity=0.110 Sum_probs=45.2
Q ss_pred ccCcEEEecccchhhH-HHHHHhhhhcCCCce-eEEecccccCCCCCCccCCCCCCeeeccC-----CHHHHHHHHHh
Q psy5948 189 LKVDAQFGGVDQRKIF-TLAEKYLPQLGYAKR-IHFMNPMVPGLAGGKMSSSEEDSKIDLLD-----APALVKKKLKK 259 (549)
Q Consensus 189 ~~~d~~~gG~DQ~~~~-~~~r~l~~~~~~~~~-~~l~~plL~~l~G~KMSKS~~~s~I~L~D-----sp~~i~kKI~~ 259 (549)
+.+|+.++|.||...+ .+-..+...+|..++ ..+++.++..-+|+|||||.|| .|.+.| .++.++=.+..
T Consensus 250 ~p~di~~~G~D~~~fh~~~~~a~~~~~g~~~~~~v~~~G~v~~~~G~KMSKS~GN-~i~p~d~i~~~g~DalR~~ll~ 326 (500)
T 2d5b_A 250 WPHAWHLIGKDILKPHAVFWPTMLKAAGIPMYRHLNVGGFLLGPDGRKMSKTLGN-VVDPFALLEKYGRDALRYYLLR 326 (500)
T ss_dssp GGGEEEEEEGGGHHHHHTHHHHHHHHHTCCCCSEEEEECCEECTTSSCCCTTTTC-CCCHHHHHHHHCHHHHHHHHHH
T ss_pred CCCeEEEEeechhhhHHHHHHHHHHHcCCCCCcEEEECceEEeCCCCcccccCCC-CCCHHHHHHhcCcHHHHHHHHh
Confidence 4678999999997632 221112223455443 3456788887799999999996 777665 55556555554
No 70
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=97.68 E-value=0.00026 Score=77.51 Aligned_cols=55 Identities=22% Similarity=0.176 Sum_probs=23.9
Q ss_pred cCcEEEecccchhhHHH---HHHhhhhcCCCce-eEEecccccCCCCCCccCCCCCCeeeccC
Q psy5948 190 KVDAQFGGVDQRKIFTL---AEKYLPQLGYAKR-IHFMNPMVPGLAGGKMSSSEEDSKIDLLD 248 (549)
Q Consensus 190 ~~d~~~gG~DQ~~~~~~---~r~l~~~~~~~~~-~~l~~plL~~l~G~KMSKS~~~s~I~L~D 248 (549)
.+++.+.|.||...... ++-++ .+..++ -.+.+.++. .+|+|||||.|| .|++.|
T Consensus 276 p~dv~~~G~D~~~fh~~~~~a~l~a--~g~~~~~~v~~hg~v~-~~G~KMSKS~GN-vi~p~d 334 (536)
T 4dlp_A 276 PANAHIIGKDISRFHAVYWPAFLMS--AQLPLPKRVFAHGFLF-NRGEKMSKSVGN-VIDPFE 334 (536)
T ss_dssp SCSEEEEEGGGHHHHHTHHHHHHHH--TTCCCCSCEEEECCEE-C-------------CCHHH
T ss_pred CcceEEeechHHHHHHHHHHHHHHH--CCCCCCcEEEeeeeEe-eCCceecccCCC-CCCHHH
Confidence 46889999999763221 22222 344333 234456665 499999999996 777654
No 71
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=97.54 E-value=9.1e-05 Score=82.11 Aligned_cols=57 Identities=23% Similarity=0.254 Sum_probs=36.9
Q ss_pred cCcEE--EecccchhhHHHHHHhhhhcCCCc----eeEEecccccCCCCCCccCCCCCCeeeccC
Q psy5948 190 KVDAQ--FGGVDQRKIFTLAEKYLPQLGYAK----RIHFMNPMVPGLAGGKMSSSEEDSKIDLLD 248 (549)
Q Consensus 190 ~~d~~--~gG~DQ~~~~~~~r~l~~~~~~~~----~~~l~~plL~~l~G~KMSKS~~~s~I~L~D 248 (549)
+.+.+ +.|.||..|+.....+...+|+.. ..++.+-+|. ++|+|||||.|+ .|.+.|
T Consensus 345 ~~~~~iyV~g~~h~~~~~~~~~~~~alG~~~~~~~~~H~~~g~v~-~~g~KMSKr~Gn-~v~l~d 407 (592)
T 1iq0_A 345 KAEETINVVDVRQSHPQALVRAALALAGYPALAEKAHHLAYETVL-LEGRQMSGRKGL-AVSVDE 407 (592)
T ss_dssp CCSEEEEEEESSSCCCHHHHHHHHHHTTCHHHHTTEEEEEECCEE-ETTBCSCC-----CCBHHH
T ss_pred CCCEEEEEEeccHHHHHHHHHHHHHHcCCCCCCCcEEEEEeeEEE-cCCCcccCCCCC-ccCHHH
Confidence 44444 689999999988788888888743 1234444554 478999999996 776654
No 72
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=97.49 E-value=0.00016 Score=77.49 Aligned_cols=70 Identities=16% Similarity=0.144 Sum_probs=42.9
Q ss_pred EEEeecCCCccchhhhHHHHH---HHHHH-HcCCcEEEEEeCceeeecCCCCh---------hHHHHHHHHHHHHHHHHH
Q psy5948 50 IYWGTATTGRPHIAYFVPMSK---IADFL-RAGCEVTILFADLHAYLDNMKAP---------WELLALRTKYYEESIKAM 116 (549)
Q Consensus 50 v~~Gi~PTG~lHIGn~~~~~~---l~~l~-~~G~~v~ilIaD~~a~~~~~~~~---------~~~~~~~~~~~~~~i~~~ 116 (549)
.+||-.|.|.+||||.++.+. +.+++ ..|++|.+.. .++.. .++ .++.+....+.+ .+...
T Consensus 29 YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~-n~dD~----ddKIi~~A~~~g~~~~e~a~~~~~-~f~~d 102 (462)
T 3tqo_A 29 YVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVR-NITDI----DDKIIKRAGENKESPAALAERFIQ-ILHED 102 (462)
T ss_dssp EECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEE-CBBCC----CHHHHHHHHHTTSCHHHHHHHHHH-HHHHH
T ss_pred EeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEec-CcCCC----CcHHHHHHHHcCCCHHHHHHHHHH-HHHHH
Confidence 368999999999999987542 45554 4698886543 32222 111 112333344444 35678
Q ss_pred HHccCCCCC
Q psy5948 117 LESIDVPIS 125 (549)
Q Consensus 117 l~a~Gldp~ 125 (549)
+.++|+.++
T Consensus 103 ~~~LgI~~d 111 (462)
T 3tqo_A 103 EKALRVLSP 111 (462)
T ss_dssp HHHHTCCCC
T ss_pred HHHcCCCCC
Confidence 889999875
No 73
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=97.47 E-value=0.00091 Score=70.81 Aligned_cols=83 Identities=12% Similarity=0.061 Sum_probs=46.5
Q ss_pred eEEEeecCCCccchhhhHHHH---HHHHHH-HcCCcEEEEE-eCceeeecCCC---ChhHHHHHHHHHHHHHHHHHHHcc
Q psy5948 49 KIYWGTATTGRPHIAYFVPMS---KIADFL-RAGCEVTILF-ADLHAYLDNMK---APWELLALRTKYYEESIKAMLESI 120 (549)
Q Consensus 49 ~v~~Gi~PTG~lHIGn~~~~~---~l~~l~-~~G~~v~ilI-aD~~a~~~~~~---~~~~~~~~~~~~~~~~i~~~l~a~ 120 (549)
..+||.-|.|.+||||.+..+ .+.+++ ..|++|.+.. .|.|..-.-.. ......+....+. ..+...+.++
T Consensus 42 ~y~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A~~~g~~~~~~~~~~~-~~~~~~~~~L 120 (414)
T 3c8z_A 42 MYVCGITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRET-QLFREDMAAL 120 (414)
T ss_dssp EEECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHHHHHTCCHHHHHHHHH-HHHHHHHHHT
T ss_pred EEeCCCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHc
Confidence 447788888999999998653 244444 4699995543 34443100000 0001122333333 3456788999
Q ss_pred CCC-CCeeEEEEccc
Q psy5948 121 DVP-ISKLKFVKGTD 134 (549)
Q Consensus 121 Gld-p~k~~i~~qS~ 134 (549)
|+. ++ .+++.|+
T Consensus 121 gi~~~d--~~~r~t~ 133 (414)
T 3c8z_A 121 RVLPPH--DYVAATD 133 (414)
T ss_dssp TCCCCS--EEEEGGG
T ss_pred CCCCCc--ceecccc
Confidence 998 66 4455555
No 74
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=97.41 E-value=0.0011 Score=73.00 Aligned_cols=67 Identities=16% Similarity=0.042 Sum_probs=41.0
Q ss_pred ccCcEEEecccchhhHHH---HHHhhhhcCCCcee-EEecccccCCCCCCccCCCCCCeeeccC-----CHHHHHHHHHh
Q psy5948 189 LKVDAQFGGVDQRKIFTL---AEKYLPQLGYAKRI-HFMNPMVPGLAGGKMSSSEEDSKIDLLD-----APALVKKKLKK 259 (549)
Q Consensus 189 ~~~d~~~gG~DQ~~~~~~---~r~l~~~~~~~~~~-~l~~plL~~l~G~KMSKS~~~s~I~L~D-----sp~~i~kKI~~ 259 (549)
+.+|+.+.|.||...+.. ++-+ ..|..++- .+.+.++ ..+|+|||||.|| .|++.| .++.++=.+.+
T Consensus 293 wp~dv~~~GkDii~FH~~~wpa~L~--a~g~~~~~~v~~hg~v-~~~G~KMSKS~GN-vV~p~d~i~~~G~DalR~~ll~ 368 (564)
T 3kfl_A 293 WPADVHVVGKDILKFHAIYWPAFLM--SAELPLPERLVSHGWW-TKDHKKISKSLGN-AFDPVEKAKEFGIDALKYFLMR 368 (564)
T ss_dssp CSCSEEEEEGGGHHHHHTHHHHHHH--HTTCCCCSCEEEECCE-EETTEECCTTTTC-CCCHHHHHHHHCHHHHHHHHHH
T ss_pred CccceEEEeecccchHHHHHHHHHH--hCCCCCCcEEEEcccE-eeCCccccccCCC-CCCHHHHHHHcCcHHHHHHHHH
Confidence 356899999999764322 2212 23443332 3455666 7799999999996 777654 44444444444
No 75
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=97.36 E-value=0.00024 Score=76.63 Aligned_cols=76 Identities=13% Similarity=0.182 Sum_probs=43.1
Q ss_pred EEEeecCCCccchhhhHHHH---HHHHHHH-cCCcEEEEE--eCc---------ee--eecCC-CChhHHHHHHHHHHHH
Q psy5948 50 IYWGTATTGRPHIAYFVPMS---KIADFLR-AGCEVTILF--ADL---------HA--YLDNM-KAPWELLALRTKYYEE 111 (549)
Q Consensus 50 v~~Gi~PTG~lHIGn~~~~~---~l~~l~~-~G~~v~ilI--aD~---------~a--~~~~~-~~~~~~~~~~~~~~~~ 111 (549)
.+||-.|.|.+||||.++++ .+.++++ .|++|.+.. .|. |. ++... ....++.+....+..
T Consensus 46 YvcgPTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~~g~~~~e~a~~~~~- 124 (501)
T 3sp1_A 46 YACGPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVYEISEFFTE- 124 (501)
T ss_dssp EECCCBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC-------------------CCHHHHHHHHHH-
T ss_pred EeCCCcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCCCCCCcHHHHHHHHcCCCHHHHHHHHHH-
Confidence 36787777999999988653 2555554 599997763 343 21 11000 000122334444444
Q ss_pred HHHHHHHccCCCCCe
Q psy5948 112 SIKAMLESIDVPISK 126 (549)
Q Consensus 112 ~i~~~l~a~Gldp~k 126 (549)
.+...+.++|+.++.
T Consensus 125 ~f~~d~~~Lgi~~d~ 139 (501)
T 3sp1_A 125 AFFNDCRKLNIVYPD 139 (501)
T ss_dssp HHHHHHHHTTCCCCS
T ss_pred HHHHHHHHcCCCCCC
Confidence 356788899998774
No 76
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=97.36 E-value=0.00027 Score=75.89 Aligned_cols=59 Identities=20% Similarity=0.151 Sum_probs=39.2
Q ss_pred ccCcEE--EecccchhhHHHHHHhhhhcCCCce--eEEecccc-cCCCC--CCccCCCCCCeeeccC
Q psy5948 189 LKVDAQ--FGGVDQRKIFTLAEKYLPQLGYAKR--IHFMNPMV-PGLAG--GKMSSSEEDSKIDLLD 248 (549)
Q Consensus 189 ~~~d~~--~gG~DQ~~~~~~~r~l~~~~~~~~~--~~l~~plL-~~l~G--~KMSKS~~~s~I~L~D 248 (549)
.++|.+ +.|.||.+|+..-..+...+|+.++ .++++.++ .+-+| .|||||.|+ .|++.|
T Consensus 233 ~~~d~~Iyv~G~dq~~~f~~l~~~l~~lG~~~~~~~h~~~g~V~l~~dG~~~KMSKr~Gn-~v~l~d 298 (464)
T 3fnr_A 233 RGYGKCINIWGADHHGYIPRMKAAMEFLGFDSNNLEIILAQMVSLLKDGEPYKMSKRAGN-FILMSD 298 (464)
T ss_dssp SSCSEEEEEEEGGGGGGHHHHHHHHHTTTCCGGGEEEEEECCEEEEETTEECCC---CCS-SCBHHH
T ss_pred cCCCeEEEEecCcHHHHHHHHHHHHHHcCCCccceEEEEeeeEEecCCCcccCCcCcCCC-CCCHHH
Confidence 356644 5999999999877777788887543 23455566 34577 499999996 777765
No 77
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=97.36 E-value=0.00026 Score=76.03 Aligned_cols=67 Identities=21% Similarity=0.059 Sum_probs=40.8
Q ss_pred cCcEEEecccch-hhHHH--HHHhhhhcCCCce-eEEecccccCCCCCCccCCCCCCeeeccC-----CHHHHHHHHHh
Q psy5948 190 KVDAQFGGVDQR-KIFTL--AEKYLPQLGYAKR-IHFMNPMVPGLAGGKMSSSEEDSKIDLLD-----APALVKKKLKK 259 (549)
Q Consensus 190 ~~d~~~gG~DQ~-~~~~~--~r~l~~~~~~~~~-~~l~~plL~~l~G~KMSKS~~~s~I~L~D-----sp~~i~kKI~~ 259 (549)
..|+..+|.|+. .|++. +.-.+ ..|...+ +.+++.++.. +|+|||||.|| .|.+.| .++.++=-+.+
T Consensus 220 ~~dih~gG~Dl~fpH~~~~~aq~~a-~~g~~~~~~~~h~g~v~~-~G~KMSKS~GN-~v~~~dll~~~g~dalR~~ll~ 295 (461)
T 1li5_A 220 HFDIHGGGSDLMFPHHENEIAQSTC-AHDGQYVNYWMHSGMVMV-DREKMSKSLGN-FFTVRDVLKYYDAETVRYFLMS 295 (461)
T ss_dssp SEEEEECBGGGTTTHHHHHHHHHHH-HSSSCCEEEECCBCCEEE-TTBCCCGGGTC-CCBHHHHHTTSCHHHHHHHHHS
T ss_pred CceEEeccCccCchHHHHHHHHHHH-hcCCCCCcEEEEeeEEEE-CCeEccccCCC-ccChhHHhhhCCHHHHHHHHHc
Confidence 567888999975 34322 22222 1344323 3345566554 89999999996 777764 56666655554
No 78
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=97.30 E-value=0.0019 Score=70.97 Aligned_cols=65 Identities=20% Similarity=0.156 Sum_probs=38.0
Q ss_pred EEEecccchhhH-HHHHHhhhhcCCCcee-EEecccccCCCCCCccCCCCCCeeeccC-----CHHHHHHHHHh
Q psy5948 193 AQFGGVDQRKIF-TLAEKYLPQLGYAKRI-HFMNPMVPGLAGGKMSSSEEDSKIDLLD-----APALVKKKLKK 259 (549)
Q Consensus 193 ~~~gG~DQ~~~~-~~~r~l~~~~~~~~~~-~l~~plL~~l~G~KMSKS~~~s~I~L~D-----sp~~i~kKI~~ 259 (549)
+.+.|.||..++ .+--.+...++...|- .+.+-++.. +|+|||||.|| .|++.| .++.++=-+.+
T Consensus 303 ~~~~G~D~~~fh~~~~~a~l~~~g~~~p~~v~~hg~v~~-~G~KMSKS~GN-vv~p~d~i~~~GaDalR~~ll~ 374 (560)
T 3h99_A 303 YHFIGKDIVYFLSLFWPAMLEGSNFRKPSNLFVHGYVTV-NGAKMSKSRGT-FIKASTWLNHFDADSLRYYYTA 374 (560)
T ss_dssp EEEEEGGGHHHHHTHHHHHHHHTTBCCCSEEEEECCEEE-TTEECCTTTTC-CCBHHHHHHHSCHHHHHHHHHH
T ss_pred EEEeccccchhHHHHHHHHHHhCCCCCCcEEEEEeEEEe-CCeeccccCCC-cCCHHHHHHHcCcHHHHHHHHH
Confidence 677899997733 2211122234544442 334455554 89999999996 777655 44455544544
No 79
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=97.07 E-value=0.00082 Score=74.91 Aligned_cols=55 Identities=18% Similarity=0.181 Sum_probs=38.8
Q ss_pred cEEEecccchhhHHHHHHhhhhcCCCc-e---eEEecccccCCCCCCccCCCC--CCeeeccC
Q psy5948 192 DAQFGGVDQRKIFTLAEKYLPQLGYAK-R---IHFMNPMVPGLAGGKMSSSEE--DSKIDLLD 248 (549)
Q Consensus 192 d~~~gG~DQ~~~~~~~r~l~~~~~~~~-~---~~l~~plL~~l~G~KMSKS~~--~s~I~L~D 248 (549)
.+-+.|.||..|+..-..+...+|+.. + .++.+-++. +.|+|||||.| + .|.+.|
T Consensus 379 ~IyV~g~~q~~~~~~l~~~l~~lG~~~~~~~~~h~~~g~V~-~~~~KMSkr~G~~n-~v~l~d 439 (629)
T 2zue_A 379 VINVIGAEQKHPQLAIKYALQLLGFEDAAANLYHLAYEHVE-RPEGKFSGRKGTWV-GFTVDE 439 (629)
T ss_dssp EEEEEEGGGHHHHHHHHHHHHHTTCHHHHHTEEEEEECCEE-BTTBCCCTTTTTTT-TCBHHH
T ss_pred EEEEEeCcHhhHHHHHHHHHHHcCCCCCCCeEEEEEeeeEE-cCCCcccCCCCCCC-eeeHHH
Confidence 345589999999987777778888743 1 233344554 46889999998 7 677655
No 80
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=96.29 E-value=0.0077 Score=66.74 Aligned_cols=55 Identities=15% Similarity=-0.048 Sum_probs=37.9
Q ss_pred cCcEEE--ecccchhhHHHHHHhhhhcCCCce-eEEecccccCCCCCCccCCCCCCeeeccC
Q psy5948 190 KVDAQF--GGVDQRKIFTLAEKYLPQLGYAKR-IHFMNPMVPGLAGGKMSSSEEDSKIDLLD 248 (549)
Q Consensus 190 ~~d~~~--gG~DQ~~~~~~~r~l~~~~~~~~~-~~l~~plL~~l~G~KMSKS~~~s~I~L~D 248 (549)
+++-++ .|.||..|+.....+.+.+|+..+ ...|.++.+- .|||||.|+ .|.|.|
T Consensus 363 ~~d~~IyV~g~~q~~~f~q~~~~~~~lG~~~~~~~~Hv~fg~v---~kMSkR~G~-~v~L~d 420 (607)
T 1f7u_A 363 HFDKMIYVIASQQDLHAAQFFEILKQMGFEWAKDLQHVNFGMV---QGMSTRKGT-VVFLDN 420 (607)
T ss_dssp CCSEEEEECCGGGHHHHHHHHHHHHHTTCGGGGGEEEECCCCE---ESCCGGGTC-CCBHHH
T ss_pred CCCcEEEEEcChHhhHHHHHHHHHHHcCCCcCcEEEEeccccc---ccccCCCCC-cccHHH
Confidence 444444 999999999877777788887433 3445555111 279999996 787765
No 81
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=93.38 E-value=0.023 Score=61.77 Aligned_cols=69 Identities=20% Similarity=0.196 Sum_probs=40.7
Q ss_pred ccCcEEEecccchhhH-HHHHHhhhhcCCCce-eEEecccccCCCCCCccCCCCCCeeeccC-----CHHHHHHHHHh
Q psy5948 189 LKVDAQFGGVDQRKIF-TLAEKYLPQLGYAKR-IHFMNPMVPGLAGGKMSSSEEDSKIDLLD-----APALVKKKLKK 259 (549)
Q Consensus 189 ~~~d~~~gG~DQ~~~~-~~~r~l~~~~~~~~~-~~l~~plL~~l~G~KMSKS~~~s~I~L~D-----sp~~i~kKI~~ 259 (549)
+.+|+.++|.||...+ .+-..+....|..++ -.+++.++.. +|+|||||.|| .|.+.| .++.++=-+.+
T Consensus 264 ~p~di~~~G~D~~~fh~~~~~a~l~~~g~~~~~~v~~hG~v~~-~G~KMSKS~GN-~v~p~d~i~~~g~DalR~~ll~ 339 (524)
T 2x1l_A 264 WPADLHMIGKDIIRFHTVYWPAFLMSAGLPLPKRIFAHGWLLN-RGEKMSKSIGN-VVDPVNLVDTFGLDQVRYFLLR 339 (524)
T ss_dssp CSCSEEEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEECCEEE-CSCSEETTTEE-SSCHHHHHHHHCHHHHHHHHHH
T ss_pred CCCeEEEEeechhHhHHHHHHHHHHHCCCCCCcEEEECcEEEe-CCcccCCcCCC-CCCHHHHHHHcChHHHHHHHHh
Confidence 3579999999996432 211112222354433 2334466555 89999999995 777655 44555544444
No 82
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=92.35 E-value=0.055 Score=62.08 Aligned_cols=69 Identities=19% Similarity=0.178 Sum_probs=41.9
Q ss_pred cCcEEEecccchh-hHHHHHHhhhh-cCCCce-eEEecccccCCCCCCccCCCCCCeeeccC-----CHHHHHHHHHh
Q psy5948 190 KVDAQFGGVDQRK-IFTLAEKYLPQ-LGYAKR-IHFMNPMVPGLAGGKMSSSEEDSKIDLLD-----APALVKKKLKK 259 (549)
Q Consensus 190 ~~d~~~gG~DQ~~-~~~~~r~l~~~-~~~~~~-~~l~~plL~~l~G~KMSKS~~~s~I~L~D-----sp~~i~kKI~~ 259 (549)
-+|+.++|.||.. ++......... .+..|+ -.+.+.++...+|+|||||.|| .|.+.| .++.++=.+..
T Consensus 544 P~dl~~~G~D~~r~w~~~~~~~~~~~~~~~pf~~v~~hg~vl~~~G~KMSKS~GN-vV~p~dli~~yGaDalR~~ll~ 620 (821)
T 1ile_A 544 PADFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMSKSKGN-VVDPWDIIRKFGADALRWYIYV 620 (821)
T ss_dssp SBSBEEEEGGGGGTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTSSCCCTTTTC-CCCHHHHHTTTCHHHHHHHHHH
T ss_pred CcccccchhhhhccHHHHHHHHHHHhcCCCCcceEEEEeeEECCCCCCCCccCCC-CCCHHHHHHHhCHHHHHHHHHh
Confidence 4788899999953 33221111111 133232 2446778888899999999996 676654 45555555544
No 83
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=92.24 E-value=0.079 Score=61.47 Aligned_cols=69 Identities=19% Similarity=0.212 Sum_probs=42.9
Q ss_pred ccCcEEEecccchh-hH--HHHHHhhhhcCCCc-eeEEecccccCCCCCCccCCCCCCeeeccC-----CHHHHHHHHHh
Q psy5948 189 LKVDAQFGGVDQRK-IF--TLAEKYLPQLGYAK-RIHFMNPMVPGLAGGKMSSSEEDSKIDLLD-----APALVKKKLKK 259 (549)
Q Consensus 189 ~~~d~~~gG~DQ~~-~~--~~~r~l~~~~~~~~-~~~l~~plL~~l~G~KMSKS~~~s~I~L~D-----sp~~i~kKI~~ 259 (549)
+-+|+.+.|.||.. ++ .+...+. -.+..| .-.+++-++...+|+|||||.|| .|.+.| .++.++=.+..
T Consensus 547 ~P~Dl~~~G~D~~r~wf~~~l~~s~~-~~g~~Pfk~v~~hG~V~d~~G~KMSKSlGN-vV~P~dvi~~yGaDalR~~lls 624 (917)
T 1ffy_A 547 FPADMYLEGSDQYRGWFNSSITTSVA-TRGVSPYKFLLSHGFVMDGEGKKMSKSLGN-VIVPDQVVKQKGADIARLWVSS 624 (917)
T ss_dssp SSBSEEEEEGGGGTTHHHHHHHHHHH-HHSSCSBSEEEEECCEECTTSCCCCSSSSC-CCCHHHHHHHTCHHHHHHHHHT
T ss_pred CCceEEEEEecccccHHHHHHHHHHH-hhCCCcccceeEeeeEEcCCCcCcccccCC-cCChHHHHHhCCHHHHHHHHhc
Confidence 34789999999953 32 2222222 123333 22355678888899999999996 776654 45555555554
No 84
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=92.22 E-value=0.039 Score=60.06 Aligned_cols=79 Identities=15% Similarity=0.108 Sum_probs=45.7
Q ss_pred CCceEEEe-ecCCCccchhhhHHHH---HHHHHH-HcCCcEEEEEeCce-ee--ecCC-CChhHHHHHHHHHHHHHHHHH
Q psy5948 46 RDLKIYWG-TATTGRPHIAYFVPMS---KIADFL-RAGCEVTILFADLH-AY--LDNM-KAPWELLALRTKYYEESIKAM 116 (549)
Q Consensus 46 ~~~~v~~G-i~PTG~lHIGn~~~~~---~l~~l~-~~G~~v~ilIaD~~-a~--~~~~-~~~~~~~~~~~~~~~~~i~~~ 116 (549)
+++.|-|. --++|.+||||.++.. .+.+++ ..|++|.+.-|..| .+ .... +-..++.+....+.+ .+...
T Consensus 9 k~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~-~~~~~ 87 (542)
T 3u1f_A 9 KVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAG-EFKKC 87 (542)
T ss_dssp CCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHH-HHHHH
T ss_pred CCEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHH-HHHHH
Confidence 55666665 4689999999998653 244444 46999977665433 21 1000 000112333444443 35677
Q ss_pred HHccCCCCC
Q psy5948 117 LESIDVPIS 125 (549)
Q Consensus 117 l~a~Gldp~ 125 (549)
+.++|++.+
T Consensus 88 ~~~lgi~~D 96 (542)
T 3u1f_A 88 FEQMDYSID 96 (542)
T ss_dssp HHHHTCCCS
T ss_pred HHHhCCccC
Confidence 888999876
No 85
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=92.19 E-value=0.066 Score=61.67 Aligned_cols=69 Identities=20% Similarity=0.237 Sum_probs=42.4
Q ss_pred ccCcEEEecccchhhHHHHHHhhh---hcCCCc-eeEEecccccCCCCCCccCCCCCCeeeccC-----CHHHHHHHHHh
Q psy5948 189 LKVDAQFGGVDQRKIFTLAEKYLP---QLGYAK-RIHFMNPMVPGLAGGKMSSSEEDSKIDLLD-----APALVKKKLKK 259 (549)
Q Consensus 189 ~~~d~~~gG~DQ~~~~~~~r~l~~---~~~~~~-~~~l~~plL~~l~G~KMSKS~~~s~I~L~D-----sp~~i~kKI~~ 259 (549)
+-+|+.+.|.||.... .++.++. -.|..| .-.+.+.++.+.+|+|||||.|| .|.+.| .++.++=.+..
T Consensus 480 ~P~d~~v~G~Dii~~W-~a~~~~~~~~~~g~~Pfk~v~~hG~vld~~G~KMSKSlGN-vIdP~dli~~yGaDalR~~ll~ 557 (862)
T 1gax_A 480 YPGDVLVTGYDILFLW-VSRMEVSGYHFMGERPFKTVLLHGLVLDEKGQKMSKSKGN-VIDPLEMVERYGADALRFALIY 557 (862)
T ss_dssp CSBSCEEEEGGGTTTT-HHHHHHHHHHHSSSCSBSEEEEECCEECTTSCBCCTTTTC-CCCHHHHHHHHCHHHHHHHHHH
T ss_pred CCceEEecCccccccH-HHHHHHHHHHhcCCCcccEEEEeeeEEcCCCCCccccCCC-CCCHHHHHHHcChHHHHHHHHh
Confidence 3478899999985422 1222221 123322 12456788999999999999996 676654 44555544544
No 86
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=91.25 E-value=0.098 Score=61.08 Aligned_cols=68 Identities=18% Similarity=0.134 Sum_probs=41.9
Q ss_pred ccCcEEEecccchh-hHHHHHHhhhh-cCCC--ceeEEecccccCCCCCCccCCCCCCeeeccC-----CHHHHHHHHH
Q psy5948 189 LKVDAQFGGVDQRK-IFTLAEKYLPQ-LGYA--KRIHFMNPMVPGLAGGKMSSSEEDSKIDLLD-----APALVKKKLK 258 (549)
Q Consensus 189 ~~~d~~~gG~DQ~~-~~~~~r~l~~~-~~~~--~~~~l~~plL~~l~G~KMSKS~~~s~I~L~D-----sp~~i~kKI~ 258 (549)
+-+|+.++|.||.. |+...+-.... ++.. |...+++-++.. +|+|||||.|| .|.+.| .++.++=.+.
T Consensus 602 ~P~Di~~~G~D~i~~H~~~~~~~~~a~~~~~~~pk~v~~~G~v~~-~G~KMSKS~GN-vv~p~d~i~~yGaDalR~~ll 678 (967)
T 1wz2_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTL-EGQKMSKSKGN-VLNFIDAIEENGADVVRLYIM 678 (967)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHHHSCSTTSCCCEEEECCEEE-SSSCCCTTTCC-CCBHHHHHHTTCHHHHHHHHH
T ss_pred CCCeEEeeeeCcchhHHHHHHHHHHHHcCcccccceEEEeeEEee-CCEEccccccC-CCCHHHHHHHhChHHHHHHHH
Confidence 45789999999954 43332211111 1211 234556666665 89999999996 777764 5566665564
No 87
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=91.16 E-value=0.11 Score=59.50 Aligned_cols=68 Identities=18% Similarity=0.116 Sum_probs=41.0
Q ss_pred ccCcEEEecccchh-hHHHHHHhhhh-cCC--CceeEEecccccCCCCCCccCCCCCCeeeccC-----CHHHHHHHHH
Q psy5948 189 LKVDAQFGGVDQRK-IFTLAEKYLPQ-LGY--AKRIHFMNPMVPGLAGGKMSSSEEDSKIDLLD-----APALVKKKLK 258 (549)
Q Consensus 189 ~~~d~~~gG~DQ~~-~~~~~r~l~~~-~~~--~~~~~l~~plL~~l~G~KMSKS~~~s~I~L~D-----sp~~i~kKI~ 258 (549)
+-+|+.++|.||.. |+...+-.... ++. -+...+++-++.. +|+|||||.|| .|.+.| .++.++=.+.
T Consensus 602 ~p~Di~~~G~D~~~~H~~~~~~~~~~~~~~~~~pk~v~~~G~v~~-~G~KMSKS~GN-vv~p~dli~~yGaDalR~~ll 678 (810)
T 1wkb_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTL-EGQKMSKSKGN-VLNFIDAIEENGADVVRLYIM 678 (810)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHHHSCGGGSCCEEEEECCEEE-TTBCCCTTTTC-CCBHHHHHHHHCHHHHHHHHH
T ss_pred CCceEEeecccccccHHHHHHHHHHHHcCccccccEEEEEeEEEe-CCeehhhcCCC-cCCHHHHHHHcChHHHHHHHH
Confidence 45789999999954 44333221111 121 1234456666654 89999999996 777765 4555555554
No 88
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=89.90 E-value=0.57 Score=52.87 Aligned_cols=85 Identities=15% Similarity=0.173 Sum_probs=49.1
Q ss_pred CceEEEee-cCCCccchhhhHH-HH---HHHHHHH-cCCcEEEEEe-CceeeecCC---CChhHHHHHHHHHHHHHHHHH
Q psy5948 47 DLKIYWGT-ATTGRPHIAYFVP-MS---KIADFLR-AGCEVTILFA-DLHAYLDNM---KAPWELLALRTKYYEESIKAM 116 (549)
Q Consensus 47 ~~~v~~Gi-~PTG~lHIGn~~~-~~---~l~~l~~-~G~~v~ilIa-D~~a~~~~~---~~~~~~~~~~~~~~~~~i~~~ 116 (549)
++.|.+++ -|+|.+||||.+. .+ .+.++++ .|++|.+..| |-|..-.-. ....++.+....+.. .+...
T Consensus 3 ~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~-~~~~~ 81 (722)
T 1rqg_A 3 RYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHE-QIKIT 81 (722)
T ss_dssp EEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHH-HHHHH
T ss_pred CEEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHH-HHHHH
Confidence 34566665 7889999999996 32 2555554 6999977665 444321000 000112333334433 45678
Q ss_pred HHccCCCCCeeEEEEccc
Q psy5948 117 LESIDVPISKLKFVKGTD 134 (549)
Q Consensus 117 l~a~Gldp~k~~i~~qS~ 134 (549)
|.++|++++. +++-++
T Consensus 82 ~~~lgis~D~--~~rT~d 97 (722)
T 1rqg_A 82 FQRAKISFDF--FGRTEL 97 (722)
T ss_dssp HHHHTCCCSE--EEETTS
T ss_pred HHHhCCCCCC--CeeCCC
Confidence 8899999884 444443
No 89
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=86.96 E-value=1.2 Score=48.34 Aligned_cols=66 Identities=18% Similarity=0.043 Sum_probs=38.4
Q ss_pred cCcEEEecccchhhHH---HHHHhhhhcCCCce-eEEecccccCCCCCCccCCCCCCeeeccC-----CHHHHHHHHHh
Q psy5948 190 KVDAQFGGVDQRKIFT---LAEKYLPQLGYAKR-IHFMNPMVPGLAGGKMSSSEEDSKIDLLD-----APALVKKKLKK 259 (549)
Q Consensus 190 ~~d~~~gG~DQ~~~~~---~~r~l~~~~~~~~~-~~l~~plL~~l~G~KMSKS~~~s~I~L~D-----sp~~i~kKI~~ 259 (549)
-+|+.+.|.||..++. .++-+.. |..++ ..+++-+| ..+|+|||||.|| .|...| .++.++=.+.+
T Consensus 278 p~d~~~~G~D~~~fh~~~~~a~l~~~--g~~~~~~v~~hg~l-~~~G~KMSKSlGN-vi~p~~~i~~ygaD~lR~~l~~ 352 (542)
T 3u1f_A 278 PADVHVIGKDILKFHAIYWPAFLLSA--GLPLPKKIVAHGWW-TKDRKKISKSLGN-VFDPVEKAEEFGYDALKYFLLR 352 (542)
T ss_dssp SCSEEEEEGGGHHHHHTHHHHHHHHH--TCCCCSCEEEECCC-EETTBCCBTTTTB-CCCHHHHHHHHCHHHHHHHHHH
T ss_pred cceEEEecccccccccchhHHHHHhh--cccccceeccccce-ecCCceeccccCC-CCChhHHHhhcCchHHHHHHHh
Confidence 3588999999955332 1222222 33322 23344443 4589999999995 776554 44555544444
No 90
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=84.80 E-value=0.82 Score=52.65 Aligned_cols=71 Identities=25% Similarity=0.295 Sum_probs=43.8
Q ss_pred ccCcEEEecccc-hhhHHHHHHh---hhhcCC---Ccee--EEeccccc-------CCCCC-------------------
Q psy5948 189 LKVDAQFGGVDQ-RKIFTLAEKY---LPQLGY---AKRI--HFMNPMVP-------GLAGG------------------- 233 (549)
Q Consensus 189 ~~~d~~~gG~DQ-~~~~~~~r~l---~~~~~~---~~~~--~l~~plL~-------~l~G~------------------- 233 (549)
+-+|+-++|.|| .-|+-++|-+ ....+. ..|| .+++-|+. +.+|+
T Consensus 542 ~PvD~yigG~EHailHllyaRf~~~~L~~~g~~~~~ePFk~ll~qGmVl~~~~~~~d~~G~~~~~~~~~v~~~~~~~~~~ 621 (880)
T 4arc_A 542 LPVDIYIGGIEHAIMHLLYFRFFHKLMRDAGMVNSDEPAKQLLCQGMVLADAFYYVGENGERNWVSPVDAIVERDEKGRI 621 (880)
T ss_dssp CSEEEEECCGGGTTTHHHHHHHHHHHHHHTTSCCCSCSEEEEECCCCEEEEEEEEECTTSCEEEECSTTCEEEECTTCCE
T ss_pred CCceEeecchhhHHHHHHHHHHHHHHHHHhhcccCCCChHHeEEeceEeecceeccccCCcccccCHHHhcccccccccc
Confidence 457999999999 5566666643 222232 3444 33556664 55665
Q ss_pred -----------------CccCCCCCCeeeccC-----CHHHHHHHHHhc
Q psy5948 234 -----------------KMSSSEEDSKIDLLD-----APALVKKKLKKA 260 (549)
Q Consensus 234 -----------------KMSKS~~~s~I~L~D-----sp~~i~kKI~~A 260 (549)
|||||.+| .|.+.| .++.++=.++.+
T Consensus 622 ~~~~~~~G~~v~~~~~eKMSKSkGN-vVdP~diIekYGADalRl~ll~~ 669 (880)
T 4arc_A 622 VKAKDAAGHELVYTGMSKMSKSKNN-GIDPQVMVERYGADTVRLFMMFA 669 (880)
T ss_dssp EEEECTTCCBCEEEEEEECCTTTTC-CCCHHHHHHHHCHHHHHHHHHHS
T ss_pred ccccccCCccccccccccccCcCCC-CCCHHHHHHHcCchHHHHHHHhc
Confidence 99999996 666554 445555555543
No 91
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=83.92 E-value=0.33 Score=55.98 Aligned_cols=41 Identities=24% Similarity=0.378 Sum_probs=24.2
Q ss_pred ccCcEEEecccc-hhhHHHHHHhh---hhcC---CCcee--EEecccccC
Q psy5948 189 LKVDAQFGGVDQ-RKIFTLAEKYL---PQLG---YAKRI--HFMNPMVPG 229 (549)
Q Consensus 189 ~~~d~~~gG~DQ-~~~~~~~r~l~---~~~~---~~~~~--~l~~plL~~ 229 (549)
+-+|+-++|.|| ..|+-.+|-+. ...+ ...|| .+++-++.+
T Consensus 530 ~P~D~yi~G~d~~ilhl~y~r~~~~~l~~~g~~~~~~Pfk~l~~~G~vl~ 579 (878)
T 2v0c_A 530 MPVDQYIGGVEHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGLFTQGMVLA 579 (878)
T ss_dssp CSBSEEECCGGGTTTHHHHHHHHHHHHHHTTSCSCSCSBSBEECCCCEEE
T ss_pred CCCeEEEechHHHHHHHHHHHHHHHHHHHhhcccCCCchHhheecceEec
Confidence 458999999999 55655555432 2223 13343 445667765
No 92
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=80.44 E-value=2.9 Score=44.94 Aligned_cols=77 Identities=22% Similarity=0.336 Sum_probs=41.2
Q ss_pred cCCCccchhhhHHHH---HHHHHH-HcCCcEEEEEe-CceeeecCC---CChhHHHHHHHHHHHHHHHHHHHccCCCCCe
Q psy5948 55 ATTGRPHIAYFVPMS---KIADFL-RAGCEVTILFA-DLHAYLDNM---KAPWELLALRTKYYEESIKAMLESIDVPISK 126 (549)
Q Consensus 55 ~PTG~lHIGn~~~~~---~l~~l~-~~G~~v~ilIa-D~~a~~~~~---~~~~~~~~~~~~~~~~~i~~~l~a~Gldp~k 126 (549)
-|+|.+||||.+..+ .+.+++ ..|++|..+.+ |-|..-.-. ....+..+....+.. .+...+.++|++++
T Consensus 22 ~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~-~~~~~~~~lgi~~d- 99 (524)
T 2x1l_A 22 YPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSD-VFQRLQEKLNISFD- 99 (524)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHH-HHHHHHHHTTCCCS-
T ss_pred CCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHH-HHHHHHHHcCCcCC-
Confidence 457999999988643 244444 46998876443 222110000 000001222223333 35678889999887
Q ss_pred eEEEEccc
Q psy5948 127 LKFVKGTD 134 (549)
Q Consensus 127 ~~i~~qS~ 134 (549)
.+++.++
T Consensus 100 -~~~~t~~ 106 (524)
T 2x1l_A 100 -RFIRTSD 106 (524)
T ss_dssp -EEEETTS
T ss_pred -CCeecCC
Confidence 5556555
No 93
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=75.02 E-value=4.9 Score=46.15 Aligned_cols=46 Identities=22% Similarity=0.261 Sum_probs=31.0
Q ss_pred CCceEEEe-ecCCCccchhhhHHHH---HHHHHHH-cCCcEEEEEe-Cceee
Q psy5948 46 RDLKIYWG-TATTGRPHIAYFVPMS---KIADFLR-AGCEVTILFA-DLHAY 91 (549)
Q Consensus 46 ~~~~v~~G-i~PTG~lHIGn~~~~~---~l~~l~~-~G~~v~ilIa-D~~a~ 91 (549)
+++.+++| --|||.||+||.+... .+.++++ .|+++....| |-|++
T Consensus 34 ~~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~~Gl 85 (862)
T 1gax_A 34 PPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGI 85 (862)
T ss_dssp CEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTH
T ss_pred CcEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccCCCCc
Confidence 45566665 4568999999998542 2555555 5999966665 55554
No 94
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=66.30 E-value=3 Score=47.94 Aligned_cols=79 Identities=14% Similarity=0.064 Sum_probs=44.2
Q ss_pred CCceEEEee-cCCCccchhhhHHHH---HHHHHH-HcCCcEEEEEe-CceeeecC---CCChhHHHHHHHHHHHHHHHHH
Q psy5948 46 RDLKIYWGT-ATTGRPHIAYFVPMS---KIADFL-RAGCEVTILFA-DLHAYLDN---MKAPWELLALRTKYYEESIKAM 116 (549)
Q Consensus 46 ~~~~v~~Gi-~PTG~lHIGn~~~~~---~l~~l~-~~G~~v~ilIa-D~~a~~~~---~~~~~~~~~~~~~~~~~~i~~~ 116 (549)
+++.+++++ -|||.+||||.+... .+.+++ ..|++|....| |.|.+-.- .+......+....+.. .++..
T Consensus 53 ~~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~i~-~~~~~ 131 (880)
T 4arc_A 53 EKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIA-YMKNQ 131 (880)
T ss_dssp CEEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCSTHHHHHHHHTTSCHHHHHHHHHH-HHHHH
T ss_pred CCEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCcHHHHHHHHcCCCHHHHHHHHHH-HHHHH
Confidence 345677665 788999999998643 245555 46999866554 44433100 0000011222223333 35677
Q ss_pred HHccCCCCC
Q psy5948 117 LESIDVPIS 125 (549)
Q Consensus 117 l~a~Gldp~ 125 (549)
|.++|+..+
T Consensus 132 l~~LGis~D 140 (880)
T 4arc_A 132 LKMLGFGYD 140 (880)
T ss_dssp HHHTTCCCC
T ss_pred HHHhCCCcC
Confidence 888998776
No 95
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=57.03 E-value=3.5 Score=47.05 Aligned_cols=46 Identities=20% Similarity=0.270 Sum_probs=32.0
Q ss_pred CCceEEEee-cCCCccchhhhHHHH---HHHHHH-HcCCcEEEEEe-Cceee
Q psy5948 46 RDLKIYWGT-ATTGRPHIAYFVPMS---KIADFL-RAGCEVTILFA-DLHAY 91 (549)
Q Consensus 46 ~~~~v~~Gi-~PTG~lHIGn~~~~~---~l~~l~-~~G~~v~ilIa-D~~a~ 91 (549)
+++.++.|. -|||.+||||.+... .+.+++ ..|++|.+..| |-|.+
T Consensus 38 ~~f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D~~Gl 89 (821)
T 1ile_A 38 PRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGL 89 (821)
T ss_dssp CBCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCHH
T ss_pred CcEEEecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCcccccccccCCCc
Confidence 566777887 889999999998643 244454 46999965554 55544
No 96
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=54.99 E-value=5.5 Score=45.84 Aligned_cols=79 Identities=14% Similarity=0.080 Sum_probs=42.4
Q ss_pred CCceEEEe-ecCCCccchhhhHHHH---HHHHHH-HcCCcEEEEEe-CceeeecC---CCChhHHHHHHHHHHHHHHHHH
Q psy5948 46 RDLKIYWG-TATTGRPHIAYFVPMS---KIADFL-RAGCEVTILFA-DLHAYLDN---MKAPWELLALRTKYYEESIKAM 116 (549)
Q Consensus 46 ~~~~v~~G-i~PTG~lHIGn~~~~~---~l~~l~-~~G~~v~ilIa-D~~a~~~~---~~~~~~~~~~~~~~~~~~i~~~ 116 (549)
+++.+++| --|+|.+||||.+... .+.+++ ..|++|.+..| |.|..-.- .+...++.+....+.. .+...
T Consensus 33 ~k~~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~Glpie~~a~k~g~~~~~~~~~~~~-~~~~~ 111 (878)
T 2v0c_A 33 GKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIR-QAKES 111 (878)
T ss_dssp -EEEEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHH-HHHHH
T ss_pred CCEEEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcccHHHHHHHHHcCCCHHHHHHHHHH-HHHHH
Confidence 34567777 5567999999998643 244555 45998875444 33332100 0000011222233333 35567
Q ss_pred HHccCCCCC
Q psy5948 117 LESIDVPIS 125 (549)
Q Consensus 117 l~a~Gldp~ 125 (549)
+.++|+..+
T Consensus 112 ~~~LGi~~D 120 (878)
T 2v0c_A 112 LRLMGILYD 120 (878)
T ss_dssp HHHTTCCCC
T ss_pred HHHhCCccC
Confidence 888898765
No 97
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=50.55 E-value=7.9 Score=44.78 Aligned_cols=46 Identities=15% Similarity=0.163 Sum_probs=32.1
Q ss_pred CCceEEEee-cCCCccchhhhHHHH---HHHHHHH-cCCcEEEEEe-Cceee
Q psy5948 46 RDLKIYWGT-ATTGRPHIAYFVPMS---KIADFLR-AGCEVTILFA-DLHAY 91 (549)
Q Consensus 46 ~~~~v~~Gi-~PTG~lHIGn~~~~~---~l~~l~~-~G~~v~ilIa-D~~a~ 91 (549)
+++.+.+|. -|||.+||||.+... .+.++++ .|+++.+..| |-|.+
T Consensus 48 ~~f~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~GwD~hGl 99 (917)
T 1ffy_A 48 ETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGL 99 (917)
T ss_dssp CBCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSH
T ss_pred CceeeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhhH
Confidence 456777777 679999999998642 2555555 5999855444 66665
No 98
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=49.01 E-value=6.7 Score=44.61 Aligned_cols=44 Identities=20% Similarity=0.233 Sum_probs=26.9
Q ss_pred CceEEEe-ecCCCccchhhhHHHH---HHHHHH-HcCCcEEEEEe-Ccee
Q psy5948 47 DLKIYWG-TATTGRPHIAYFVPMS---KIADFL-RAGCEVTILFA-DLHA 90 (549)
Q Consensus 47 ~~~v~~G-i~PTG~lHIGn~~~~~---~l~~l~-~~G~~v~ilIa-D~~a 90 (549)
++.+..| --|||.+||||.+... .+.+++ ..|++|....| |.|.
T Consensus 35 ~~~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~D~~G 84 (810)
T 1wkb_A 35 KFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITG 84 (810)
T ss_dssp EEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBBCCB
T ss_pred cEEEEeCCCCCCCCCccccchhHHHHHHHHHHHHcCCCccCcCCccCCCC
Confidence 3444443 3467999999998643 244444 45999866443 4443
No 99
>1v8f_A Pantoate-beta-alanine ligase; rossmann fold, dimer, structural genomics, riken STR genomics/proteomics initiative, RSGI; HET: P6G; 1.90A {Thermus thermophilus} SCOP: c.26.1.4 PDB: 1ufv_A
Probab=37.29 E-value=81 Score=30.97 Aligned_cols=56 Identities=16% Similarity=0.183 Sum_probs=40.2
Q ss_pred cCcEEEecccchhhHHHHHHhhhhcCCCceeEEecccccCCCCCCccCCCCCCeeeccCCH
Q psy5948 190 KVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGGKMSSSEEDSKIDLLDAP 250 (549)
Q Consensus 190 ~~d~~~gG~DQ~~~~~~~r~l~~~~~~~~~~~l~~plL~~l~G~KMSKS~~~s~I~L~Dsp 250 (549)
+.|....|..-+|.+.+-+++.+.++. +...+..|.+...+|.+||++ .|+|++..
T Consensus 136 ~Pd~~~FG~kd~qq~~~l~~~~~dl~~-~v~iv~~p~vr~~dGlaiSSr----nirLs~~e 191 (276)
T 1v8f_A 136 QPQRAYFGEKDYQQLLVVRRMVRDLGF-PVEVVGVPTVREEDGLALSSR----NVYLSPET 191 (276)
T ss_dssp CCSEEEEEGGGHHHHHHHHHHHHHHTC-CCEEEEECCCBCTTSCBCCGG----GGGCCHHH
T ss_pred CCCEEEECCCCCcCHHHHHHHHHHcCC-eEEEEecCcEEcCCCCEeEEe----EEEeCHHH
Confidence 456455677778888888889988886 333345577777789999998 46776533
No 100
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=33.67 E-value=13 Score=43.23 Aligned_cols=46 Identities=22% Similarity=0.258 Sum_probs=30.1
Q ss_pred CCceEEEee-cCCCccchhhhHHHH---HHHHHHH-cCCcEEEEEe-Cceee
Q psy5948 46 RDLKIYWGT-ATTGRPHIAYFVPMS---KIADFLR-AGCEVTILFA-DLHAY 91 (549)
Q Consensus 46 ~~~~v~~Gi-~PTG~lHIGn~~~~~---~l~~l~~-~G~~v~ilIa-D~~a~ 91 (549)
+++.++.|+ -|||.||+||.+... .+.++++ .|++|....| |.|.+
T Consensus 34 ~kf~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~~GwD~~Gl 85 (967)
T 1wz2_A 34 KKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGS 85 (967)
T ss_dssp GCCBEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCCCCBBCCSS
T ss_pred CcEEEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCccCCCCcCCCCCc
Confidence 567777776 468999999998643 2445554 6988855432 44443
No 101
>3ag6_A Pantothenate synthetase; ATP-dependent enzyme, ATP-binding, nucleotide-binding, pantothenate biosynthesis; HET: PAJ PG4; 1.85A {Staphylococcus aureus} PDB: 3ag5_A* 2x3f_A*
Probab=32.07 E-value=1.5e+02 Score=29.23 Aligned_cols=56 Identities=14% Similarity=0.096 Sum_probs=39.1
Q ss_pred EEecccchhhHHHHHHhhhhcCCCceeEEecccccCCCCCCccCCCCCCeeeccCCHHHHH
Q psy5948 194 QFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGGKMSSSEEDSKIDLLDAPALVK 254 (549)
Q Consensus 194 ~~gG~DQ~~~~~~~r~l~~~~~~~~~~~l~~plL~~l~G~KMSKS~~~s~I~L~Dsp~~i~ 254 (549)
...|..-+|.+.+-+++.+.++.. .-.+..|.+...+|-.||++ .+||++......
T Consensus 145 ~~FG~Kd~qql~~l~~m~~dl~~~-V~iv~vp~vr~~dGlaiSSr----n~yLs~~eR~~A 200 (283)
T 3ag6_A 145 AYFGKKDAQQLAIVEQMVKDFNHA-VEIIGIDIVREADGLAKSSR----NVYLTEQERQEA 200 (283)
T ss_dssp EEEEGGGHHHHHHHHHHHHHTTCC-CEEEEECCCBCTTSCBCCGG----GGGCCHHHHHHT
T ss_pred EEECCCCccCHHHHHHHHHHcCCe-EEEEecCcEEeCCCCEecCC----ccccCHHHHHHH
Confidence 346676688888888899888863 22334567777789999998 467876444433
No 102
>2ejc_A Pantoate--beta-alanine ligase; X-RAY diffraction, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Thermotoga maritima}
Probab=31.76 E-value=1.3e+02 Score=29.64 Aligned_cols=60 Identities=18% Similarity=0.173 Sum_probs=40.6
Q ss_pred cCcEEEecccchhhHHHHHHhhhhcCCCceeEEecccccCCCCCCccCCCCCCeeeccCCHHHHH
Q psy5948 190 KVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGGKMSSSEEDSKIDLLDAPALVK 254 (549)
Q Consensus 190 ~~d~~~gG~DQ~~~~~~~r~l~~~~~~~~~~~l~~plL~~l~G~KMSKS~~~s~I~L~Dsp~~i~ 254 (549)
+.+-...|..-+|.+.+-+++.+.++.. ...+..|.+...+|..||++ .+||++......
T Consensus 140 ~p~~~~FG~kd~qq~~~l~~~~~dl~~~-v~iv~vp~vr~~dGlaiSSr----n~yLs~~er~~A 199 (280)
T 2ejc_A 140 KPHRAYFGQKDAQQFRVLRRMVRDLNMD-VEMIECPIVREPDGLAMSSR----NVYLSPEERQQA 199 (280)
T ss_dssp CCSEEEEEGGGHHHHHHHHHHHHHTTCC-CEEEEECCCBCTTSCBCCGG----GGGCCHHHHHHT
T ss_pred cCceEEeCCCCCcCHHHHHHHHHHcCCe-EEEEeeCcEEcCCCCEeccC----cccCCHHHHHHH
Confidence 3433456677788888888899888863 22234577777789999998 467876444433
No 103
>3uk2_A Pantothenate synthetase; AMP, structural genomics, seattle S genomics center for infectious disease, ssgcid, ligase; HET: AMP; 2.25A {Burkholderia thailandensis} SCOP: c.26.1.0
Probab=27.11 E-value=1.9e+02 Score=28.46 Aligned_cols=57 Identities=16% Similarity=0.097 Sum_probs=43.2
Q ss_pred ccCcEEEecccchhhHHHHHHhhhhcCCCceeEEecccccCCCCCCccCCCCCCeeeccCCH
Q psy5948 189 LKVDAQFGGVDQRKIFTLAEKYLPQLGYAKRIHFMNPMVPGLAGGKMSSSEEDSKIDLLDAP 250 (549)
Q Consensus 189 ~~~d~~~gG~DQ~~~~~~~r~l~~~~~~~~~~~l~~plL~~l~G~KMSKS~~~s~I~L~Dsp 250 (549)
.+.|....|..-+|.+.+-+.+.+.++.. .-.+.+|.+...+|-.||+. ..||++..
T Consensus 140 v~Pd~A~FG~Kd~qql~~ir~mv~dl~~~-v~iv~~ptvRe~dGla~SSR----N~yLs~~e 196 (283)
T 3uk2_A 140 VQPRVAVFGKKDYQQLMIVRRMCQQLALP-VEIVAAETVRDADGLALSSR----NRYLSEAE 196 (283)
T ss_dssp HCCSEEEEETTSHHHHHHHHHHHHHTTCC-CEEEEECCCBCTTSCBCCGG----GGGCCHHH
T ss_pred cCCCeeEeCCchhhhHHHHHHHHHHcCCc-eEEEecCCEECCCCCEEeec----cccCCHHH
Confidence 35677888999899999999999988863 23345678888899999988 24665533
No 104
>1jhd_A Sulfate adenylyltransferase; sulfurylase, APS, chemoautotroph, bromide; 1.70A {Sulfur-oxidizing endosymbiont ofriftia pachyptila} SCOP: b.122.1.3 c.26.1.5
Probab=26.59 E-value=1.8e+02 Score=29.96 Aligned_cols=56 Identities=11% Similarity=-0.051 Sum_probs=33.7
Q ss_pred ccCHHHHHHHHhcCCceEEEeecCCCccchhhhHHHHHHHHHHHcCCcE--EEEEeCcee
Q psy5948 33 FLGEDRLNVILKERDLKIYWGTATTGRPHIAYFVPMSKIADFLRAGCEV--TILFADLHA 90 (549)
Q Consensus 33 i~~~~~L~~~l~~~~~~v~~Gi~PTG~lHIGn~~~~~~l~~l~~~G~~v--~ilIaD~~a 90 (549)
..+..++|+.++++.-.-.+|++.--++|.||...+..+.. +.+.+. +..++..|.
T Consensus 177 ~~tP~e~R~~f~~~gw~~VvafqTrNPiHrgH~~l~~~Ale--~~~~D~vll~P~~g~~K 234 (396)
T 1jhd_A 177 FRTAVEIRNEIKEHGWSKVVAFQTRNPMHRAHEELCRMAME--SLDADGVVVHMLLGKLK 234 (396)
T ss_dssp BCCHHHHHHHHHHHTCSSEEEEEESSCCCHHHHHHHHHHHH--HHTCSEEEEEEEECCCC
T ss_pred cCCHHHHHHHHHhcCCceEEEeccCCCCchHHHHHHHHHHH--HcCCCeEEEEECCCCCC
Confidence 35677899888764333345588777799999876543332 334443 333455544
No 105
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=22.28 E-value=98 Score=27.72 Aligned_cols=32 Identities=19% Similarity=-0.008 Sum_probs=25.4
Q ss_pred eeeEEEEEecCCCCCceEEEEEEcCCCCCEEEEeC
Q psy5948 376 RVGKIVEVSRHPDAEALYVEKIDLGEENPRTIVSG 410 (549)
Q Consensus 376 ~vG~I~~v~~hp~adkL~v~~vd~G~~~~~~Ivsg 410 (549)
.||.|+.++..+ +-++.+||.|.|.+..+++-
T Consensus 52 IvGiVv~~~~~~---~~~~ytIDD~TG~~I~cv~w 83 (159)
T 3kf6_A 52 IVGYIAAIDIYE---GKHVLTVDDCSGMVLRVVFI 83 (159)
T ss_dssp EEEEEEEEEEET---TEEEEEEECSSSCEEEEEEE
T ss_pred EEEEEEEEEEeC---CEEEEEEecCCCCeEEEEEE
Confidence 689999999765 56899999999865666653
No 106
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B
Probab=21.12 E-value=1.6e+02 Score=28.98 Aligned_cols=34 Identities=15% Similarity=0.143 Sum_probs=21.0
Q ss_pred eEEEe-ecCCCccchhhhHHHHHHHHHHHcCCcEEEEEeCc
Q psy5948 49 KIYWG-TATTGRPHIAYFVPMSKIADFLRAGCEVTILFADL 88 (549)
Q Consensus 49 ~v~~G-i~PTG~lHIGn~~~~~~l~~l~~~G~~v~ilIaD~ 88 (549)
.+|-| |+| +|+||+..+..+ .+..-.++++++..
T Consensus 10 ~i~~GtFdP---~h~GHl~~~~~a---~~~~d~~~~~v~~~ 44 (352)
T 2qjt_B 10 SVFIGRFQP---FHKGHLHNIIIA---LQNSKKVIINIGSC 44 (352)
T ss_dssp EEEEECCTT---CCHHHHHHHHHH---HHSEEEEEEEEEEE
T ss_pred EEEEEecCC---CChHHHHHHHHH---HHhCCcEEEEECCC
Confidence 45555 666 899998775333 33333567777654
Done!